BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009675
(529 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444694|ref|XP_002277754.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis
vinifera]
Length = 730
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/529 (71%), Positives = 430/529 (81%), Gaps = 33/529 (6%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +QS S T+K + KEALVKLLRWHFGHA+FR +QL+AI+A+LSGRDCFCLM
Sbjct: 1 MKKSPLPVQSVSGTEKK--VCGKEALVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAKPGIVLVV PLIALMENQV+ LKEKGIA EFLSSTQT +V+ KI
Sbjct: 59 PTGGGKSMCYQIPALAKPGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPSLRLLYVTPEL ATPGFMS+L KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLQSGKPSLRLLYVTPELIATPGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVPILALTATA PKVQKDV+ESLCLQNPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRNHLPDVPILALTATAVPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD YADL +LK+ G+ C IVYCLERTTCDELSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 239 LLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ QVVVATVAFGMGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS+SLL
Sbjct: 299 LDDWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNR 417
YYG+DDR+RMEFILS +SK QS S+++ SKKS++DFS +++ + R ++L N
Sbjct: 359 YYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHMVEYCEGSSCRRKKILEN- 417
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSA-VL 476
+Q+ S+C+ SCDACKHPNL+AKYL E SA L
Sbjct: 418 ------------------------FGEQVAASICRKSCDACKHPNLVAKYLEEFASACAL 453
Query: 477 QKNHF--SQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINL 523
++N+ SS D+ D Q +EFWNRDDE SGSEEDISD D I +
Sbjct: 454 RQNNVFSRIFISSSSDLVDKEQLTEFWNRDDEVSGSEEDISDSDDGIEV 502
>gi|38230500|gb|AAR14271.1| predicted protein [Populus tremula x Populus alba]
Length = 772
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/534 (70%), Positives = 425/534 (79%), Gaps = 39/534 (7%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKS L M + + K++ KE LVKLLRWHFG+ FR KQL+AI+AVLSGRDCFCLM
Sbjct: 1 MKKSSLPMVQNTGS-KDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLM 59
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVVSPLI ENQVI LKEKGIA EFLSSTQ V+ KI
Sbjct: 60 PTGGGKSMCYQIPALAKHGIVLVVSPLI---ENQVIALKEKGIAAEFLSSTQHQVVRNKI 116
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL ATPGFMSKL KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 117 HEDLDSGKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPS 176
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVP+LALTATAAPKVQ DV+ESLCLQ+PLVLKSSFNRPN++YEVRYKD
Sbjct: 177 YRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLKSSFNRPNIYYEVRYKD 236
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDDAYADL SVLK+ GD CAIVYCLER TCD LSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 237 LLDDAYADLPSVLKSCGDVCAIVYCLERATCDGLSAHLSKNGISSAAYHAGLNNKLRSSV 296
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ QVVVATVAFGMGIDRKDVR+VCHFNIPKSME+FYQESGRAGRDQLPSKSLL
Sbjct: 297 LDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSKSLL 356
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNR 417
YYG+DDR++MEFIL ++K QS S+ SKKS++DF+ +++ AG R ++L
Sbjct: 357 YYGVDDRKKMEFILRNAENKKLQSSSSGGELSKKSLTDFNLMIEYCEGAGCRRKKILE-- 414
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVL- 476
SF +Q+ +LCK SCDACKHPNL+AKYL ELT+++
Sbjct: 415 ---------------------SFG--EQVSATLCKKSCDACKHPNLVAKYLEELTTSIAR 451
Query: 477 QKNHFSQIFIS-SQDMTD-----GGQYSEFWNRDDEASGSEEDISDCDGNINLV 524
Q+N FS++F+S S DM D Q SEFWNRDDEA SEEDISD D V
Sbjct: 452 QRNGFSRVFMSRSTDMIDEEFRIDEQISEFWNRDDEAKSSEEDISDFDDETEAV 505
>gi|255579791|ref|XP_002530733.1| DNA helicase, putative [Ricinus communis]
gi|223529697|gb|EEF31639.1| DNA helicase, putative [Ricinus communis]
Length = 718
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/530 (70%), Positives = 429/530 (80%), Gaps = 37/530 (6%)
Query: 1 MKKSPLAMQ--STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFC 58
M KSPL +Q S++ Q+ + + KE LVKLLRWHFGH+ FR KQL+AIQ+VLSGRDCFC
Sbjct: 1 MNKSPLPVQIISSNDKQRKQMITGKEGLVKLLRWHFGHSDFRGKQLEAIQSVLSGRDCFC 60
Query: 59 LMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118
LMPTGGGKSMCYQIPAL++PGIVLVVSPLIALMENQV+ LKEK IA EFLSSTQT Q+KT
Sbjct: 61 LMPTGGGKSMCYQIPALSRPGIVLVVSPLIALMENQVMALKEKEIAAEFLSSTQTSQLKT 120
Query: 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178
KI+EDLDSGKPS+RLLYVTPEL ATPGFMSKL +IH+RGLLNL+AIDEAHCIS+WGHDFR
Sbjct: 121 KIHEDLDSGKPSIRLLYVTPELIATPGFMSKLTRIHARGLLNLIAIDEAHCISTWGHDFR 180
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
SYRKLSSLRN PDVPILALTATA PKVQKDV+ESLCLQ+PL+LKSSFNR N++YEVRY
Sbjct: 181 ASYRKLSSLRNLFPDVPILALTATAVPKVQKDVIESLCLQDPLILKSSFNRSNIYYEVRY 240
Query: 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298
KDLLDDAYADL SVLK++GD CAI+YCL+RTTCD L+A+LS GISCAAYHAGLN+K RS
Sbjct: 241 KDLLDDAYADLSSVLKSSGDICAIIYCLQRTTCDGLAAHLSKNGISCAAYHAGLNNKLRS 300
Query: 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358
SVLDDWISS+ QVVVATVAFG KDV+LVCHFNIPKSMEAFYQESGRAGRDQLP +S
Sbjct: 301 SVLDDWISSKIQVVVATVAFG-----KDVKLVCHFNIPKSMEAFYQESGRAGRDQLPCRS 355
Query: 359 LLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLG 415
LLYYG+DD++RMEFILS SK QS S+++ SKKS+SDF Q+++ +G R ++L
Sbjct: 356 LLYYGVDDQKRMEFILSSAGSKKLQSSSSQDGLSKKSLSDFKQMVEYCEGSGCRRKKIL- 414
Query: 416 NRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL-TSA 474
SF +Q+PVSLCK +CDAC+HPNL+AKYL EL T+
Sbjct: 415 ----------------------ESFG--EQVPVSLCKKTCDACRHPNLVAKYLEELKTAC 450
Query: 475 VLQKNHFSQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINLV 524
++ SQIFISS D GQ+SEFWNRDDE S SEEDISD D +V
Sbjct: 451 TARRAGLSQIFISS-STEDRGQFSEFWNRDDEVSNSEEDISDSDDGTEVV 499
>gi|297738545|emb|CBI27790.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/546 (67%), Positives = 426/546 (78%), Gaps = 50/546 (9%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +QS S T+K + KEALVKLLRWHFGHA+FR +QL+AI+A+LSGRDCFCLM
Sbjct: 1 MKKSPLPVQSVSGTEKK--VCGKEALVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAKPGIVLVV PLIALMENQV+ LKEKGIA EFLSSTQT +V+ KI
Sbjct: 59 PTGGGKSMCYQIPALAKPGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPSLRLLYVTPEL ATPGFMS+L KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLQSGKPSLRLLYVTPELIATPGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVPILALTATA PKVQKDV+ESLCLQNPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRNHLPDVPILALTATAVPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD YADL +LK+ G+ C IVYCLERTTCDELSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 239 LLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSV 298
Query: 301 LDDWISSRKQVVVAT-----------------VAFGMGIDRKDVRLVCHFNIPKSMEAFY 343
LDDWISS+ QVV+ + + +GIDRKDVR+VCHFNIPKSMEAFY
Sbjct: 299 LDDWISSKIQVVINSWGFFFIFNFFLFFALFNIILSIGIDRKDVRIVCHFNIPKSMEAFY 358
Query: 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL 403
QESGRAGRDQLPS+SLLYYG+DDR+RMEFILS +SK QS S+++ SKKS++DFS ++
Sbjct: 359 QESGRAGRDQLPSRSLLYYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHMV 418
Query: 404 DV---AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKH 460
+ + R ++L N +Q+ S+C+ SCDACKH
Sbjct: 419 EYCEGSSCRRKKILEN-------------------------FGEQVAASICRKSCDACKH 453
Query: 461 PNLLAKYLGELTSA-VLQKNHF--SQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDC 517
PNL+AKYL E SA L++N+ SS D+ D Q +EFWNRDDE SGSEEDISD
Sbjct: 454 PNLVAKYLEEFASACALRQNNVFSRIFISSSSDLVDKEQLTEFWNRDDEVSGSEEDISDS 513
Query: 518 DGNINL 523
D I +
Sbjct: 514 DDGIEV 519
>gi|30690461|ref|NP_195299.2| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|75334307|sp|Q9FT72.1|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName:
Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3
gi|11121447|emb|CAC14867.1| DNA Helicase [Arabidopsis thaliana]
gi|332661156|gb|AEE86556.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 713
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/522 (67%), Positives = 422/522 (80%), Gaps = 38/522 (7%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALAKPGIVLVVSPLIALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 179 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 239 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL---DVAGKRFSRVLGNR 417
YYG+DDR++ME++L +NS++ + SSKK SDF Q++ + +G R ++L
Sbjct: 359 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKIL--- 408
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQ 477
SF ++ PV CK +CDACKHPN +A L EL + +
Sbjct: 409 --------------------ESFG--EEFPVQQCKKTCDACKHPNQVAHCLEELMTTASR 446
Query: 478 KNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSEEDISDCD 518
+++ S+IFI SS + T+ GQYSEFWNR+++ S S E+ISD D
Sbjct: 447 RHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNSNEEISDSD 488
>gi|356532786|ref|XP_003534951.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Glycine max]
Length = 732
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/530 (68%), Positives = 420/530 (79%), Gaps = 36/530 (6%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M+KS L + + +K + L KE LVKLLRWHFG+ FRD QLDAIQAVLSG+DCFCLM
Sbjct: 1 MQKSALPLSDANANKKREELRRKETLVKLLRWHFGYPDFRDMQLDAIQAVLSGKDCFCLM 60
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVV PLIALMENQV+ LKEKGIA EFLSST+T K KI
Sbjct: 61 PTGGGKSMCYQIPALAKAGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTTDAKVKI 120
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS RLLYVTPEL TPGFM+KL KI++RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 121 HEDLDSGKPSTRLLYVTPELITTPGFMTKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPS 180
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLR++LPDVPILALTATA PKVQKDV+ESL +QNPL+LKSSFNRPN++YEVRYKD
Sbjct: 181 YRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLMLKSSFNRPNIYYEVRYKD 240
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDDAYADL + LK+ GD CAIVYCLER+ CD+LS LS GISCAAYHAGLN+K R+SV
Sbjct: 241 LLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQNGISCAAYHAGLNNKMRTSV 300
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ +VVVATVAFG KDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS+SLL
Sbjct: 301 LDDWISSKIKVVVATVAFG-----KDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLL 355
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNR 417
YYG+DDR+RMEFIL K+ SK SQS S++E SSK S+ F+ +++ +G R RVL
Sbjct: 356 YYGVDDRKRMEFILRKSVSKKSQSSSSQEESSKMSLIAFNLMVEYCEGSGCRRKRVLE-- 413
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTS--AV 475
SF +Q+ SLC +CD C+HPNL+A+YL +LT+ A+
Sbjct: 414 ---------------------SFG--EQVTASLCGKTCDGCRHPNLVARYLEDLTTACAL 450
Query: 476 LQKNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINLV 524
QKN S++F+ SS D +G Q SEFWN+D+EASGSEEDISD D +V
Sbjct: 451 RQKNGSSRVFMTSSTDAINGEQLSEFWNQDEEASGSEEDISDSDDGNEVV 500
>gi|357450081|ref|XP_003595317.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
gi|355484365|gb|AES65568.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
Length = 776
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/575 (62%), Positives = 425/575 (73%), Gaps = 72/575 (12%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
+KKSPL + TS +K L KE+LVK+LRWHFG+ FR QL+AIQAVLSGRDCFCLM
Sbjct: 5 VKKSPLPLIETSGNKKKLELCSKESLVKVLRWHFGYPDFRGLQLEAIQAVLSGRDCFCLM 64
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVV PLIALMENQV+ LKEKGIA EFLSST+T + K KI
Sbjct: 65 PTGGGKSMCYQIPALAKEGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTAKAKDKI 124
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPS RLLYVTPEL ATPGFMSKL KIHSRGLL+L+AIDEAHCISSWGHDFRP+
Sbjct: 125 HEDLGSGKPSTRLLYVTPELIATPGFMSKLTKIHSRGLLSLIAIDEAHCISSWGHDFRPT 184
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLS+LR++LPDVPILALTATA PKVQKDV+ESL +QN L+LK+SFNRPN++YEVRYKD
Sbjct: 185 YRKLSTLRSHLPDVPILALTATAVPKVQKDVVESLHMQNALILKTSFNRPNIYYEVRYKD 244
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD+Y+DL LK+ GD CAI+YCLER+ CD+LSA+LS GISCAAYHAGLN+K R+SV
Sbjct: 245 LLDDSYSDLSDRLKSMGDVCAIIYCLERSMCDDLSAHLSQRGISCAAYHAGLNNKMRTSV 304
Query: 301 LDDWISSRKQVVVATVAFG----------------------------------------- 319
L DWISS+ +VVVATVAFG
Sbjct: 305 LHDWISSKTKVVVATVAFGRKCGIPHQMVQIACTTGTPLRNRNATGIAWTTTPAESIGLP 364
Query: 320 -------MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
MGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS SLLYYG+DDRRRMEF
Sbjct: 365 NLWCSFRMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRRRMEF 424
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLS 432
IL + +K SQS S++E S++ S++ F+Q+++ G
Sbjct: 425 ILRNSGNKKSQSSSSQEESTRMSLTAFNQMVEYCE--------------------GSGCR 464
Query: 433 LVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAV-LQKNHFSQIFI-SSQD 490
++ SF +Q+ SLC +CD+C+HPNL+A+ L +LT+A L++ S++FI SS D
Sbjct: 465 RKIILESFG--EQVTTSLCGKTCDSCRHPNLVARNLEDLTAACSLRQRGGSRVFITSSTD 522
Query: 491 MTDGGQYSEFWNRDDEASGSEEDISDCDGNINLVI 525
DGGQ SEFWNRD+EASGSEEDISD DG+ N +
Sbjct: 523 AIDGGQLSEFWNRDEEASGSEEDISDIDGDGNEAV 557
>gi|449446630|ref|XP_004141074.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
gi|449488107|ref|XP_004157941.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
Length = 729
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/529 (65%), Positives = 419/529 (79%), Gaps = 30/529 (5%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKS L + S ++ +K+K + KE+L KLLRWHFGH++FR KQL+ I+AVLSG+DCFCLM
Sbjct: 1 MKKSSLPLLSNNRPEKHK--YSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGKDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALA G+VLVV PLIALMENQV+ LKEKGI+ E+LSSTQ+ Q K KI
Sbjct: 59 PTGGGKSVCYQIPALASNGMVLVVCPLIALMENQVMALKEKGISAEYLSSTQSTQAKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL+S KP+LRLLYVTPEL AT GFM+KL KI+SRGLLNL+AIDEAHCIS+WGHDFRPS
Sbjct: 119 HEDLNSSKPTLRLLYVTPELIATSGFMAKLMKIYSRGLLNLIAIDEAHCISTWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLR+ LP++PILALTATA PKVQKDV+ SL L+NPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRSQLPNIPILALTATAVPKVQKDVIISLGLENPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD ADLC+ LK++GD CAI+YCLER CD+LS YL+ GISCAAYHAGL ++ R SV
Sbjct: 239 LLDDPLADLCNQLKSSGDVCAIIYCLERAMCDQLSVYLAKYGISCAAYHAGLKNELRKSV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
L+DWISSR QVVVATVAFGMGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPSKSLL
Sbjct: 299 LEDWISSRIQVVVATVAFGMGIDRKDVRVVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQ---SFSTRERSSKKSISDFSQVLD-VAGKRFSRVLGN 416
YYG++DRRRMEFIL S + + S S++E+ +KS++DF+Q+++ G R R
Sbjct: 359 YYGIEDRRRMEFILRNRSSADKKILPSSSSQEKQPEKSLTDFTQMVEYCEGSRCRR---- 414
Query: 417 RYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL-TSAV 475
+ SF +Q+P S+C SCDACKHPN++A YL EL TSAV
Sbjct: 415 -----------------KQILESFG--EQVPASICSRSCDACKHPNIIAAYLEELTTSAV 455
Query: 476 LQKNHFSQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINLV 524
+ N S+IF+S + D ++SEFWN DEAS S EDIS+ D + +V
Sbjct: 456 RRNNSSSRIFVSRSNTDDEDEFSEFWNLKDEASESGEDISNSDDDTEVV 504
>gi|297802358|ref|XP_002869063.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
gi|297314899|gb|EFH45322.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/553 (62%), Positives = 421/553 (76%), Gaps = 69/553 (12%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M KSPL +Q+ + +K + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MNKSPLPVQNVHSS--DKKVAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLI---------------------------ALMEN 93
PTGGGKS+CYQIPALAKPGIVLVVSPLI ALMEN
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIESLFLLVSLTMCFVSTLMLSCFFFNFSALMEN 118
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV+ LKEKGIA E+LSSTQ VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+
Sbjct: 119 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKL 178
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
HSRGLLNL+AIDEAHCISSWGHDFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++
Sbjct: 179 HSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVID 238
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL LQNPLVLKSSFNRPN+FYEVRYKDLLD+AY DL ++LK+ G+ CAI+YCLERTTCD+
Sbjct: 239 SLNLQNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDD 298
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329
LS +LS+ GIS +AYHAGLN K RS+VLDDW+SS+KQ++VATVAFG +GID+KDVR+
Sbjct: 299 LSVHLSSIGISSSAYHAGLNSKLRSTVLDDWLSSKKQIIVATVAFGSMGHVGIDKKDVRM 358
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
VCHFNIPKSME+FYQESGRAGRDQLPS+S+LYYG+DDR++ME++L +++K S
Sbjct: 359 VCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSP------ 412
Query: 390 RSSKKSISDFSQVL---DVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQI 446
SSKK SDF Q++ + +G R ++L SF ++
Sbjct: 413 -SSKKPTSDFEQIVTYCEGSGCRRKKILE-----------------------SFG--EEF 446
Query: 447 PVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGGQYSEFWNRDD 505
PV CK +CDACK+PN +A L EL + ++++ S+IFI SS + T+ GQYSEFWNR++
Sbjct: 447 PVQHCKKTCDACKYPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFWNRNE 506
Query: 506 EASGSEEDISDCD 518
+ S S+E+ISD D
Sbjct: 507 DGSNSDEEISDSD 519
>gi|357137820|ref|XP_003570497.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Brachypodium
distachyon]
Length = 777
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 318/522 (60%), Positives = 392/522 (75%), Gaps = 32/522 (6%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKK+ L ++ ++ + KE L +L+ +FG++ FR +QL+AI+AVLSGRDCFCLM
Sbjct: 1 MKKA-LPIKGALAGSRHGTISPKE-LENVLKQYFGYSGFRGRQLEAIEAVLSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPAL K GIVLV+SPLIALMENQV LK KG+ EFLSSTQT + K +I
Sbjct: 59 PTGGGKSMCYQIPALVKAGIVLVISPLIALMENQVTSLKSKGVPAEFLSSTQTAKNKNEI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
YEDLDSG PSL+LLYVTPEL AT GF +KL K++SRGLL LVAIDEAHCIS+WGHDFRPS
Sbjct: 119 YEDLDSGNPSLKLLYVTPELVATFGFKAKLTKLYSRGLLGLVAIDEAHCISTWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRK+SSLR PD+PILALTATA PKVQKDV+ SLCLQNP++L++SFNRPN+FYEVRYKD
Sbjct: 179 YRKISSLRKQFPDIPILALTATAVPKVQKDVISSLCLQNPVILRASFNRPNIFYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD Y+D+ ++LK++G+ C+I+YCLER CD+L+ +LS GIS A YHAGLN K RS+V
Sbjct: 239 LLDDVYSDISNLLKSSGNVCSIIYCLERAACDDLNMHLSQQGISSAVYHAGLNSKVRSAV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SSR QVVVATVAFGMGIDR+DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+L
Sbjct: 299 LDDWLSSRTQVVVATVAFGMGIDRQDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSVL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNR 417
YYG+DDRRRMEFIL SK SQ S+ S+K+++DFSQ++D + R +++ +
Sbjct: 359 YYGLDDRRRMEFILRNTNSKKSQPSSSSSELSEKALADFSQIVDYCESSSCRRKKIIESF 418
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAV-L 476
V P +LC+ SCDACKHPN ++ L EL
Sbjct: 419 GEKVQP-------------------------TLCQRSCDACKHPNQVSSRLEELRRVPNC 453
Query: 477 QKNHFSQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCD 518
+ N S +F SS + +EFWNR+D+AS S EDISD D
Sbjct: 454 RYNKISPVFKSSS-VNPENLDTEFWNREDDASISAEDISDSD 494
>gi|326514896|dbj|BAJ99809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 763
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/512 (59%), Positives = 381/512 (74%), Gaps = 36/512 (7%)
Query: 1 MKKS-PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
MKK+ PL S K E E++ L+ +FG+++FR +QL+AI+AVLSGRDCFCL
Sbjct: 1 MKKALPLKGGSAGSRHGTKSPKELESV---LKQYFGYSEFRGRQLEAIEAVLSGRDCFCL 57
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKSMCYQIPAL K G+VLV+SPLIALMENQV LK KGI EFLSSTQT K K
Sbjct: 58 MPTGGGKSMCYQIPALVKTGVVLVISPLIALMENQVSSLKSKGIPAEFLSSTQTTANKNK 117
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I+EDLDSG+PSL+LLYVTPEL AT GF +KL K+H+RGLL LVAIDEAHCIS+WGHDFRP
Sbjct: 118 IHEDLDSGRPSLKLLYVTPELVATSGFKAKLTKLHNRGLLGLVAIDEAHCISTWGHDFRP 177
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
SYRK+SSLR PD+PILALTATA PKVQKDV+ SL LQNP++LK+SFNRPN+FYEVRYK
Sbjct: 178 SYRKISSLRKQFPDIPILALTATAVPKVQKDVISSLSLQNPVILKASFNRPNIFYEVRYK 237
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
DLLDD ++D+ ++LK++G+ C+I+YCLER CD+L+ +LS GIS AAYHAGLN K R++
Sbjct: 238 DLLDDVFSDISNLLKSSGNVCSIIYCLERAACDDLTMHLSQQGISSAAYHAGLNSKVRTT 297
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
VLDDW+SSR QVVVATVAFGMGIDR DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+
Sbjct: 298 VLDDWLSSRTQVVVATVAFGMGIDRHDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSV 357
Query: 360 LYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLGN 416
LYYG++DRRRMEFIL + S+ Q S+ S+K+++DFSQ++D R +++ +
Sbjct: 358 LYYGLEDRRRMEFILRNSSSRKQQPPSSSTELSEKTLADFSQIVDYCESSTCRRKKIIES 417
Query: 417 RYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVL 476
V P +LC+ +CDACKHPN +A L +L
Sbjct: 418 FGEKVQP-------------------------TLCQRTCDACKHPNQVASRLEDLRRVPN 452
Query: 477 QK-NHFSQIFISSQDMTDGGQY-SEFWNRDDE 506
+ N S +F +S D + +EFWNR+D+
Sbjct: 453 SRFNKISPVFKTSS--VDPKHFDTEFWNREDD 482
>gi|242066738|ref|XP_002454658.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
gi|241934489|gb|EES07634.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
Length = 714
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 302/523 (57%), Positives = 367/523 (70%), Gaps = 67/523 (12%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
K L ++ S +K P + L +L +FG++ FR KQL+AI+AVLSGRDCFCLMPT
Sbjct: 2 KGVLQIKGASGREKKAP----KELESVLNQYFGYSGFRGKQLEAIEAVLSGRDCFCLMPT 57
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GGGKSMCYQ+PAL ENQV LK KGI EFLSSTQ K +I+E
Sbjct: 58 GGGKSMCYQVPAL----------------ENQVASLKNKGIPAEFLSSTQASHTKQRIHE 101
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DLD+G PSL+LLYVTPEL AT GFM+KLKK+++RGLL LVAIDEAHCIS+WGHDFRPSYR
Sbjct: 102 DLDTGNPSLKLLYVTPELVATSGFMAKLKKLYNRGLLGLVAIDEAHCISTWGHDFRPSYR 161
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242
KLSSLR PD+P+LALTATA PKVQKDV+ SLCLQNP++L++SFNRPN+FYEVRYKDLL
Sbjct: 162 KLSSLRKQFPDIPLLALTATAVPKVQKDVISSLCLQNPVILRASFNRPNIFYEVRYKDLL 221
Query: 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
DD Y+D+ ++LK++G+ C+I+YCLER CD+LS +LS G+S AAYHAGLN K RSSVLD
Sbjct: 222 DDVYSDISNLLKSSGNACSIIYCLERAACDDLSMHLSQQGVSSAAYHAGLNSKVRSSVLD 281
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
DW+SSR QVVVATVAFGMGIDR+DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+LYY
Sbjct: 282 DWLSSRTQVVVATVAFGMGIDRQDVRIVCHFNLPKSMESFYQESGRAGRDQRPSRSVLYY 341
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVW 422
G+DDRRRMEFIL + +Q S+ S+K+++DFSQV
Sbjct: 342 GLDDRRRMEFILRNPKINKAQPSSSSNELSEKALADFSQVQP------------------ 383
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAV-LQKNHF 481
+LC+ SCDACKHPNL++ L EL + N
Sbjct: 384 --------------------------TLCQRSCDACKHPNLVSSRLEELRRVPNCRFNKI 417
Query: 482 SQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINLV 524
S +F SS + +EFWNR+DEAS S EDISD D +V
Sbjct: 418 SPVFQSS--VKPAHLDTEFWNREDEASISAEDISDSDDGNEVV 458
>gi|30690466|ref|NP_849500.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|332661157|gb|AEE86557.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 620
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/427 (63%), Positives = 338/427 (79%), Gaps = 36/427 (8%)
Query: 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155
+ LKEKGIA E+LSSTQ VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HS
Sbjct: 1 MALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHS 60
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215
RGLLNL+AIDEAHCISSWGHDFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL
Sbjct: 61 RGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSL 120
Query: 216 CLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275
L+NPLVLKSSFNRPN+FYEVRYKDLLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS
Sbjct: 121 NLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLS 180
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
+LS+ GIS AAYHAGLN K RS+VLDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNI
Sbjct: 181 VHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNI 240
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395
PKSME+FYQESGRAGRDQLPS+S+LYYG+DDR++ME++L +NS++ + SSKK
Sbjct: 241 PKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL-----RNSENKKS--SSSKKP 293
Query: 396 ISDFSQVL---DVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCK 452
SDF Q++ + +G R ++L SF ++ PV CK
Sbjct: 294 TSDFEQIVTYCEGSGCRRKKILE-----------------------SFG--EEFPVQQCK 328
Query: 453 NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSE 511
+CDACKHPN +A L EL + ++++ S+IFI SS + T+ GQYSEFWNR+++ S S
Sbjct: 329 KTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNSN 388
Query: 512 EDISDCD 518
E+ISD D
Sbjct: 389 EEISDSD 395
>gi|224133974|ref|XP_002327725.1| predicted protein [Populus trichocarpa]
gi|222836810|gb|EEE75203.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/320 (83%), Positives = 288/320 (90%), Gaps = 3/320 (0%)
Query: 1 MKKSPLAM-QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
MKKSPL M Q+TS K++ KE LVKLLRWHFG+ FR KQL+AI+AVLSGRDCFCL
Sbjct: 1 MKKSPLPMVQNTSS--KDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCL 58
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKSMCYQIPALAK GIVLVVSPLIALMENQV+ LKEKGIA EFLSSTQT V+ K
Sbjct: 59 MPTGGGKSMCYQIPALAKRGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSSVRNK 118
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I+EDLDSGKPS+RLLYVTPEL ATPGFMSKL KIH+RGLLNL+AIDEAHCISSWGHDFRP
Sbjct: 119 IHEDLDSGKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRP 178
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
SYRKLSSLRN+LPDVP+LALTATAAPKVQ DV+ESLCLQ+PLVL SSFNRPN++YEVRYK
Sbjct: 179 SYRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLSSSFNRPNIYYEVRYK 238
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
DLLDDAYADL SVLK+ GD CAIVYCLERTTCD LSA+LS GIS AAYHAGLN+K RSS
Sbjct: 239 DLLDDAYADLSSVLKSCGDICAIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSS 298
Query: 300 VLDDWISSRKQVVVATVAFG 319
VLDDWISS+ QVVVATVAFG
Sbjct: 299 VLDDWISSKIQVVVATVAFG 318
>gi|302818699|ref|XP_002991022.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
gi|300141116|gb|EFJ07830.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
Length = 600
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/499 (52%), Positives = 342/499 (68%), Gaps = 33/499 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L LL+ +FGH+ FR QLDAI+AVL+G+DCFC+MPTG GKS+CYQIPALAKPGIVLVVS
Sbjct: 1 LEDLLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALME+QV LK + I E+LSS+Q ++++ KI+E+L SGKP+L+LLYVTPE AT
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNH 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M KL+K+H R LL+L+AIDEAHCISSWGHDFRPSYRKLS+LR LPD+PILALTATA+
Sbjct: 121 LMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATASK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+++SL LQ VL SSFNR N+FYEVR+KDL+ AY DL +++ C I+YC
Sbjct: 181 KVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKDLMTSAYEDLRNIITKAPTRCMIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R CDE+ + L + GISC YHAG+N KARS L DW+ ++VAT+AFG GIDRK
Sbjct: 241 HARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGIDRK 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+VCHFN+PKS+E+FYQESGRAGRD P+KS+LYY +DD+R ME+++ + +
Sbjct: 301 DVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSILYYSVDDKRTMEYVIRSSSQRQQGGI 360
Query: 386 STRERSS--KKSISDFSQVL---DVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSF 440
S + KK+I F +V+ + A R RVL + +V P+
Sbjct: 361 SENGENELLKKNIEAFEKVVAYCEEASCRRRRVLEHFGENVSPL---------------- 404
Query: 441 HLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEF 500
LC +CDACK P L++ L EL A + + +F +D + SEF
Sbjct: 405 ---------LCSKTCDACKWPEKLSRDLKELADASCFNSVWHLLFTCCRDCSSPNDKSEF 455
Query: 501 WNRDDE---ASGSEEDISD 516
WN D+E +E+DISD
Sbjct: 456 WNYDNEDVDEHDAEDDISD 474
>gi|302820099|ref|XP_002991718.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
gi|300140567|gb|EFJ07289.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
Length = 594
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/499 (52%), Positives = 341/499 (68%), Gaps = 39/499 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L +LL+ +FGH+ FR QLDAI+AVL+G+DCFC+MPTG GKS+CYQIPALAKPGIVLVVS
Sbjct: 1 LEELLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALME+QV LK + I E+LSS+Q ++++ KI+E+L SGKP+L+LLYVTPE AT
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNH 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M KL+K+H R LL+L+AIDEAHCISSWGHDFRPSYRKLS+LR LPD+PILALTATA+
Sbjct: 121 LMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATASK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+++SL LQ VL SSFNR N+FYEVR+KDL+ AY DL +++ C I+YC
Sbjct: 181 KVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKDLMKSAYEDLRNIITTAPTRCMIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R CDE+ + L + GISC YHAG+N KARS L DW+ ++VAT+AFG GIDRK
Sbjct: 241 HARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGIDRK 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+VCHFN+PKS+E+FYQESGRAGRD P+KS+LYY +DD+R ME+++ + +
Sbjct: 301 DVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSILYYSVDDKRTMEYVIRSSSQRQQAGI 360
Query: 386 STRERSS--KKSISDFSQVL---DVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSF 440
S + KK+I F +V+ + A R RVL + +V P+
Sbjct: 361 SENGENELLKKNIEAFEKVVAYCEEASCRRRRVLEHFGENVSPL---------------- 404
Query: 441 HLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEF 500
LC +CDACK P L++ L EL A +F +D + SEF
Sbjct: 405 ---------LCSKTCDACKWPEKLSRDLKELADASC------LLFTCCRDCSSPNDKSEF 449
Query: 501 WNRDDE---ASGSEEDISD 516
WN D+E +E+DISD
Sbjct: 450 WNYDNEDVDEHDAEDDISD 468
>gi|3367592|emb|CAA20044.1| putative protein [Arabidopsis thaliana]
gi|7270526|emb|CAB81483.1| putative protein [Arabidopsis thaliana]
Length = 926
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 277/522 (53%), Positives = 347/522 (66%), Gaps = 108/522 (20%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+S
Sbjct: 284 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVS-------- 333
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
ALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 334 ----------------------------ALMENQVMALKEKGIAAEYLSSTQATHVKNKI 365
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDE
Sbjct: 366 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDE-------------- 411
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
+ + + +VQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 412 ----------------IFFSTSILCRVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 455
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 456 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 515
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 516 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 575
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL---DVAGKRFSRVLGNR 417
YYG+DDR++ME++L +NS++ + SSKK SDF Q++ + +G R ++
Sbjct: 576 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKI---- 624
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQ 477
L+ CK +CDACKHPN +A L EL + +
Sbjct: 625 -------------------------LESFGEEQCKKTCDACKHPNQVAHCLEELMTTASR 659
Query: 478 KNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSEEDISDCD 518
+++ S+IFI SS + T+ GQYSEFWNR+++ S S E+ISD D
Sbjct: 660 RHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNSNEEISDSD 701
>gi|125541362|gb|EAY87757.1| hypothetical protein OsI_09175 [Oryza sativa Indica Group]
Length = 692
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/508 (52%), Positives = 331/508 (65%), Gaps = 88/508 (17%)
Query: 21 HEKEA---LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
H K+A L +L+ HFG++ FR KQL+AI+AVLS
Sbjct: 18 HGKKAPQELENVLKQHFGYSGFRGKQLEAIEAVLS------------------------- 52
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
ALMENQV LK KGI EFLSSTQT K KI+EDLDSG PSL+LLYVT
Sbjct: 53 -----------ALMENQVASLKSKGIPAEFLSSTQTSHNKQKIHEDLDSGNPSLKLLYVT 101
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PEL AT GF +KL K+++RGLL LVAIDEAHCIS+WGHDFRPSYRKLSSLRN PD+PIL
Sbjct: 102 PELVATSGFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRPSYRKLSSLRNQFPDIPIL 161
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQKDV+ SLCL+NPL+L++SFNRPN+FYEVRYKDLLDD Y+D+ ++LK++G
Sbjct: 162 ALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRYKDLLDDVYSDISNLLKSSG 221
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ C+IVYCLER CD+L+ +LS GIS AAYHAGLN K
Sbjct: 222 NVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNSK---------------------- 259
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
GIDR+DVR+VCH+N+PKSMEAFYQESGRAGRDQ PSKS+LYYG+DDR++MEFIL
Sbjct: 260 ---GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFILRNT 316
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
++K S+ S+ S+K+++DFSQ++D R ++
Sbjct: 317 KNKKSELSSSSTELSEKALADFSQIIDYCENSTCR--------------------RKMII 356
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSA-VLQKNHFSQIFISSQDMTDGGQ 496
SF +++ +LC+ SCDACKHPNL++ L EL + N S +F SS
Sbjct: 357 ESFG--EKVQPTLCQRSCDACKHPNLVSSRLEELRRVPTCRYNKISPVFKSSL-ANPKHM 413
Query: 497 YSEFWNRDDEASGSEEDISDCDGNINLV 524
+EFWNR+D+AS S EDISD D +V
Sbjct: 414 ETEFWNREDDASISVEDISDSDDGKEVV 441
>gi|47497399|dbj|BAD19436.1| DNA helicase RECQE-like [Oryza sativa Japonica Group]
gi|125583898|gb|EAZ24829.1| hypothetical protein OsJ_08609 [Oryza sativa Japonica Group]
Length = 692
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/508 (52%), Positives = 331/508 (65%), Gaps = 88/508 (17%)
Query: 21 HEKEA---LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
H K+A L +L+ HFG++ FR KQL+AI+AVLS
Sbjct: 18 HGKKAPQELENVLKQHFGYSGFRGKQLEAIEAVLS------------------------- 52
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
ALMENQV LK KGI EFLSSTQT K KI+EDLDSG PSL+LLYVT
Sbjct: 53 -----------ALMENQVASLKSKGIPAEFLSSTQTSHNKQKIHEDLDSGNPSLKLLYVT 101
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PEL AT GF +KL K+++RGLL LVAIDEAHCIS+WGHDFRPSYRKLSSLRN PD+PIL
Sbjct: 102 PELVATSGFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRPSYRKLSSLRNQFPDIPIL 161
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQKDV+ SLCL+NPL+L++SFNRPN+FYEVRYKDLLDD Y+D+ ++LK++G
Sbjct: 162 ALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRYKDLLDDVYSDISNLLKSSG 221
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ C+IVYCLER CD+L+ +LS GIS AAYHAGLN K
Sbjct: 222 NVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNSK---------------------- 259
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
GIDR+DVR+VCH+N+PKSMEAFYQESGRAGRDQ PSKS+LYYG+DDR++MEFIL
Sbjct: 260 ---GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFILRNT 316
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
++K S+ S+ S+K+++DFSQ++D R ++
Sbjct: 317 KNKKSELSSSSTELSEKALADFSQIIDYCENSTCR--------------------RKMII 356
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSA-VLQKNHFSQIFISSQDMTDGGQ 496
SF +++ +LC+ SCDACKHPNL++ L EL + N S +F SS
Sbjct: 357 ESFG--EKVQPTLCQRSCDACKHPNLVSSRLEELRRVPTCRYNKISPVFKSSL-ANPKHM 413
Query: 497 YSEFWNRDDEASGSEEDISDCDGNINLV 524
+EFWNR+D+AS S EDISD D +V
Sbjct: 414 ETEFWNREDDASISVEDISDSDDGKEVV 441
>gi|307106002|gb|EFN54249.1| hypothetical protein CHLNCDRAFT_16802, partial [Chlorella
variabilis]
Length = 351
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 178/353 (50%), Positives = 240/353 (67%), Gaps = 12/353 (3%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94
G FR +QL+AI A L+G+DCF LMPTGGGKS+CY + +PG VLVVSPLIALM++Q
Sbjct: 1 GFDSFRGRQLEAIMAALAGQDCFVLMPTGGGKSLCYALVPAIRPGTVLVVSPLIALMQDQ 60
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154
V L+ +G+ + LSST+T + ++ EDL +P +LLYVTPEL AT GFM L+ +
Sbjct: 61 VQALRARGLRADLLSSTRTEADRRRLLEDLQQHRPDTQLLYVTPELLATAGFMRCLRGAY 120
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214
+ G L LVA+DEAH IS+ GHDFRP+YR+L ++R LP +P++ALTATA+ +VQ+D++
Sbjct: 121 AAGALQLVAVDEAHSISAMGHDFRPAYRQLGAVRRELPRLPLMALTATASDRVQRDIVRQ 180
Query: 215 LCLQNPLVLKSSFNRPNLFYE----VRYKDLLDDAYADLCSVLKANGDT------CAIVY 264
L ++ P +L++SF+RPN+ YE + + LL A CS + C ++Y
Sbjct: 181 LGMREPRLLRTSFDRPNIRYEGGCPLASRRLL--ALHACCSRRQPGEQQGKVPVPCTVIY 238
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R D ++A L A GI+ AAYHAGL RS VL DW + R VV ATVAFGMGIDR
Sbjct: 239 CHRREDVDRVAAALRAHGIAAAAYHAGLPGATRSRVLQDWQAGRLAVVAATVAFGMGIDR 298
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
DVR V H ++P S+EA+YQE+GRAGRD PS+S++YY DR R EF+L +
Sbjct: 299 ADVRYVLHHSLPGSLEAYYQEAGRAGRDGAPSRSIVYYSRRDRERHEFVLRRQ 351
>gi|291001553|ref|XP_002683343.1| predicted protein [Naegleria gruberi]
gi|284096972|gb|EFC50599.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/358 (48%), Positives = 241/358 (67%), Gaps = 9/358 (2%)
Query: 30 LRWHFGHAQFRDKQLDAI-QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
L+ +F +FR Q + I V + +D ++PTGGGKS+CYQ+P+L PG+ LVVSPLI
Sbjct: 5 LKKYFKLEEFRPNQFEIIFNLVKNKQDTLVILPTGGGKSLCYQLPSLILPGVTLVVSPLI 64
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFM 147
+LM NQV L I + +S+Q KI DL+SG P+ +LLYVTPEL T+ F
Sbjct: 65 SLMHNQVQALDHLSIPSNYWNSSQKKSEIQKIQSDLESGNPNYKLLYVTPELLTSNQTFQ 124
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S ++ + SR L+L+AIDE+HCISSWGHDFR S+R+L+ L++ P VPI+ALTATA KV
Sbjct: 125 SIMRLLASRDQLSLIAIDESHCISSWGHDFRKSFRQLNFLKDTFPQVPIIALTATATEKV 184
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++ESL ++NP +SFNRPN+ YE+RYKD+L + Y DL + L + C I+YC
Sbjct: 185 RSDIVESLKMRNPKCFITSFNRPNISYEIRYKDILHNPYEDLRNFLNEHAQECGIIYCRT 244
Query: 268 RTTCDELSAYLS----AGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
R DEL LS GG SC +YHAGL R +V DW+ + +++V T+A+GM
Sbjct: 245 RNQVDELVLQLSMEKDKGGKDLFSCKSYHAGLKLSERKTVQTDWLEGKTKIIVGTIAYGM 304
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GID+KDVR V H+ +PKS+E FYQESGRAGRD +KSLLYY ++ ++F++S+ +
Sbjct: 305 GIDKKDVRFVVHYGMPKSLEGFYQESGRAGRDGKKAKSLLYYCSREKNSIQFLISREE 362
>gi|340377955|ref|XP_003387494.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Amphimedon
queenslandica]
Length = 906
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 270/448 (60%), Gaps = 34/448 (7%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPAL-AKPGIVL 82
L K L+ HFG+++F+ Q +A++ V G+ D F MPTG GKS+CYQ+PAL AK G+ L
Sbjct: 11 LRKSLKEHFGYSEFKTSLQREAVECVFEGKKDVFISMPTGSGKSLCYQLPALLAKKGLAL 70
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIAL+E+QV L+ KG+ L+S + ++KI L P ++LLYVTPE+ A
Sbjct: 71 VLSPLIALIEDQVSSLQSKGLPAVALNSKTSASDRSKIASQLKLKSPPIKLLYVTPEMVA 130
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F L ++H G + +AIDEAHC+S WGHDFRP Y KL LR +P VPI+ALTAT
Sbjct: 131 TSNFRETLTRLHRNGGVVFIAIDEAHCVSEWGHDFRPDYLKLGELRGVVPGVPIIALTAT 190
Query: 203 AAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC-----SVLKAN 256
A P+VQ+DV+ SL ++ P+ V KSS RPNLFY V +K+ L D DLC ++ +
Sbjct: 191 ATPRVQEDVVRSLKMREPVSVFKSSCFRPNLFYNVSFKETLKDPLKDLCDYITEALTSST 250
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C I+YC R C EL+ +++ GI YHAGL RS V + W+ ++VAT+
Sbjct: 251 TEGCGIIYCRTREGCGELAGRITSKGILAKPYHAGLKSNERSQVQEQWMKGVVPIIVATI 310
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
+FGMG+D+ +VR V H+ +PK +EA+YQESGRAGRD L + +YY DR ++ F+L K
Sbjct: 311 SFGMGVDKANVRFVVHWTLPKGIEAYYQESGRAGRDGLKAYCRIYYSRFDRDQLLFLLQK 370
Query: 377 NQSKNSQSFSTRERSSKKSISDF---SQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSL 433
S E+ +KK S F S+ + K F ++ +Y + ++
Sbjct: 371 EIS---------EKETKKGKSQFKSASRSKEATEKSFETLV--KYCE-----EANCRHTV 414
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACKHP 461
+ Y+ + P+ CK+ CD CK P
Sbjct: 415 IAQYF------KDPIPECKDLCDVCKMP 436
>gi|167535712|ref|XP_001749529.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771921|gb|EDQ85580.1| predicted protein [Monosiga brevicollis MX1]
Length = 2199
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 233/352 (66%), Gaps = 2/352 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+K + FG +FR QL+A+ A L G+DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 597 LLKAFKQRFGLHRFRPHQLEAVNAALLGQDCFVLMPTGGGKSLCYQLPAVTSRGVTVVIS 656
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+L+++QV GL+ GI FLSSTQ+ + +++ L + LLY+TPE +
Sbjct: 657 PLISLIQDQVAGLQALGIRVLFLSSTQSRAEQNEVHRQLCADAVQDDLLYITPERLKSSM 716
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ +H+RGLL IDEAHC+S WGHDFRP Y++L +R + P VP++ALTATA P
Sbjct: 717 MRQTFESLHARGLLARFVIDEAHCVSQWGHDFRPDYKELQIVRQWFPRVPLMALTATATP 776
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++DV+ L +Q + +SSFNR NLFYEVR K +AD+ +++ N + IVYC
Sbjct: 777 RVKEDVLNILGMQRAVTFQSSFNRTNLFYEVRPKK--KSLFADIAAIVAKNRGSSGIVYC 834
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ R + + L GI AYHAGL+ RS V D W SR ++ AT+AFGMGID+
Sbjct: 835 MSRRDAETTALDLQRRGIKALAYHAGLDPGLRSEVQDVWARSRADIICATIAFGMGIDKP 894
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
DVR V H +PKSME +YQE+GRAGRD P++ +L+Y D+ R EF+++K+
Sbjct: 895 DVRYVIHATLPKSMEGYYQEAGRAGRDGQPAQCILFYTFADKARHEFMINKS 946
>gi|260806927|ref|XP_002598335.1| hypothetical protein BRAFLDRAFT_119181 [Branchiostoma floridae]
gi|229283607|gb|EEN54347.1| hypothetical protein BRAFLDRAFT_119181 [Branchiostoma floridae]
Length = 425
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 178/371 (47%), Positives = 242/371 (65%), Gaps = 20/371 (5%)
Query: 34 FGHAQFR-DKQLDAIQAVLSGRDC------FCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
F H +FR + Q +A +AV+ R C + MPTG GKS+CYQ+PA+ PGI +VVSP
Sbjct: 15 FKHDEFRSEAQENATRAVVRARTCSGRKDVYISMPTGAGKSLCYQLPAVMAPGITMVVSP 74
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++Q+ L++ I E L+S + + + ++ DL S KP +LLY+TPEL ATPGF
Sbjct: 75 LIALMQDQLEHLRKLNICAESLNSKLSAKDRKRVLADLRSSKPKTKLLYITPELAATPGF 134
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L+ + SR LL +A+DEAHC+S WGHDFRP Y KL SLR L DVP +ALTATA
Sbjct: 135 QQLLETLKSRKLLAHLAVDEAHCVSQWGHDFRPDYLKLGSLREKLEDVPCIALTATATSA 194
Query: 207 VQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGDT----- 259
VQKD++ SL LQ P+ K+S RPNLFY+V+YK++LDD Y DL +KA G+
Sbjct: 195 VQKDIINSLHLQEPVQKFKTSVFRPNLFYDVKYKEVLDDPYEDLKDFAVKALGEEGVEPV 254
Query: 260 ------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
C IVYC R C E++A L+ G+ AYHAGL D R V DW+ + V+V
Sbjct: 255 KGPHKGCGIVYCRTRDGCTEVAARLTKKGLLSKAYHAGLKDSTREEVQMDWMEGKVPVIV 314
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT++FGMG+D+ VR V H+NIPKSM +YQESGRAGRD + LYY +R ++ F+
Sbjct: 315 ATISFGMGVDKATVRFVAHWNIPKSMAGYYQESGRAGRDGKQAFCRLYYSRHERDQVCFL 374
Query: 374 LSKNQSKNSQS 384
+ ++ S+ +++
Sbjct: 375 IKQDISRPNKA 385
>gi|428184941|gb|EKX53795.1| hypothetical protein GUITHDRAFT_52059, partial [Guillardia theta
CCMP2712]
Length = 340
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 170/340 (50%), Positives = 224/340 (65%), Gaps = 3/340 (0%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG + FR Q +AI VL G+D + TGGGKS+CYQ+PAL PG+ +V+SPLIA
Sbjct: 1 LKQAFGLSDFRPLQKEAIHNVLGGKDVIVCLATGGGKSLCYQLPALVLPGVTVVISPLIA 60
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-LRLLYVTPELTATPGFMS 148
LM++QV L+EKGI L+ST + I L + K S ++LLYVTPE +
Sbjct: 61 LMQDQVFSLREKGIDAVLLNSTLSPTETRNILHRLWAIKHSPIKLLYVTPEALSGSTLFP 120
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +++ + L+L AIDEAHCISSWGHDFRP++RKLS L+ + VP++ALTATA +V+
Sbjct: 121 YLNRLNEQNKLSLFAIDEAHCISSWGHDFRPAFRKLSILKRFYSKVPVIALTATATKRVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL--DDAYADLCSVLKANGDTCAIVYCL 266
D+ +L L NP L ++FNRPN+ YEVR+K+ + D D+ L C I+YC
Sbjct: 181 DDIASTLMLNNPEFLIATFNRPNITYEVRFKEQVPDSDVQGDIARFLSKMKGQCGIIYCF 240
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+RT C E++ YL G S AYHAGL + RS +L +W + +V ATVAFGMGID+ D
Sbjct: 241 KRTECSEIAMYLKGKGFSIEAYHAGLKNDERSEILQNWTEGKIHIVAATVAFGMGIDKAD 300
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H +PKSME+FYQESGRAGRD PS S+LYY DD
Sbjct: 301 VRFVIHQTMPKSMESFYQESGRAGRDGKPSVSVLYYSEDD 340
>gi|300868275|ref|ZP_07112904.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
gi|300333710|emb|CBN58088.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
Length = 726
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 254/386 (65%), Gaps = 16/386 (4%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+ +L + L+ FG+ FR Q + ++A LS RD +MPTGGGKS+C+Q+PAL KPG+
Sbjct: 11 QPRSLEQALKHFFGYDSFRPGQREIVEAALSKRDMLIVMPTGGGKSLCFQLPALLKPGLT 70
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L++ GI FL+ST + M+ +++ LD GK ++LLYV PE
Sbjct: 71 VVVSPLIALMQDQVESLRDNGIGATFLNSTLSLMETRSRETAILD-GK--IKLLYVAPER 127
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F+ L ++ + ++ AIDEAHC+S WGHDFRP YR++ +R+ P +PI+ALT
Sbjct: 128 LLSERFLPFLDQVAASLGISAFAIDEAHCVSEWGHDFRPDYRQILQVRDRYPHIPIMALT 187
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA +V+ D+M+ L L+ P + +SFNRPNL+YEVR K ++A+L ++ NG +
Sbjct: 188 ATATDRVRLDIMQQLALREPYIHVASFNRPNLYYEVRAKT--KHSFAELLQIIDKNGGS- 244
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R DEL+ L GIS YHAGLND R+S +I Q++VATVAFGM
Sbjct: 245 GIIYCLSRKNVDELAYKLQQVGISALPYHAGLNDSDRTSNQTRFIRDDVQIMVATVAFGM 304
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ DVR V H+N+P+++E +YQESGRAGRD P++ +L+ G DR+ +E+++ +
Sbjct: 305 GINKPDVRFVVHYNLPRNLEGYYQESGRAGRDGEPAQCILFLGYGDRKTIEYLIEQKPDP 364
Query: 381 NSQSFSTRERSSKKSISDFSQVLDVA 406
Q +T++ F +V+D A
Sbjct: 365 QEQRIATQQ---------FRRVIDYA 381
>gi|432870056|ref|XP_004071785.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Oryzias latipes]
Length = 989
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 246/389 (63%), Gaps = 10/389 (2%)
Query: 25 ALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+L + L+ HFG FR K Q D I+AVL G RD F MPTG GKS+CYQ+PA+ GI L
Sbjct: 3 SLKQALKTHFGFNNFRSKLQEDVIKAVLKGDRDVFVCMPTGAGKSLCYQLPAMLAEGITL 62
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIAL+++QV LKE I ++S + + I DL S P L+LLY+TPE+ A
Sbjct: 63 VISPLIALIQDQVNHLKELNIPACSINSKLNVGERRLILADLGSSSPKLKLLYITPEMVA 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+P F L + SR LL+ VA+DEAHC+S WGHDFRP Y KL LR +P VP LALTAT
Sbjct: 123 SPSFQPCLTDLCSRSLLSYVAVDEAHCVSQWGHDFRPDYLKLGELRARMPGVPCLALTAT 182
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-------- 254
A VQ+D+++SL L +PL + R NL+Y+V ++DLL + Y L + ++
Sbjct: 183 APKNVQEDIVKSLRLSSPLSFVTPVFRSNLYYDVIFRDLLPNPYVHLHAFIRKALEMENG 242
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+NG C IVYC R C+ ++ L+ G+ YHAGL R+ ++W+ + V+VA
Sbjct: 243 SNGQGCGIVYCRTREGCETVAYQLTKLGVLAKPYHAGLKAGDRTEAQNEWMQGKVLVIVA 302
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T++FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS YY D+ ++ F++
Sbjct: 303 TISFGMGVDKANVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRTYYSPKDKEQINFLI 362
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQVL 403
+ ++ + + + S K +I+DF ++
Sbjct: 363 RQEVNRRQEKRGSAKESDKSAITDFEAMV 391
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 254/399 (63%), Gaps = 25/399 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+N Q +K+ QVLD A R S VLG
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 254/399 (63%), Gaps = 25/399 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+N Q +K+ QVLD A R S VLG
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 254/399 (63%), Gaps = 25/399 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+N Q +K+ QVLD A R S VLG
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|390349584|ref|XP_795300.3| PREDICTED: ATP-dependent DNA helicase Q5-like [Strongylocentrotus
purpuratus]
Length = 1223
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/493 (37%), Positives = 277/493 (56%), Gaps = 53/493 (10%)
Query: 34 FGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG+A F+ + Q + V + D F LMPTG GKS+CYQ+PA K G+ LV+SPLIAL+
Sbjct: 67 FGYASFKSELQKKGTEEVFKAKKDVFILMPTGAGKSLCYQLPATCKKGVTLVISPLIALI 126
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
E+Q+ L E GI E L+S + + DL S KP +++LY+TPE AT FM+ LK
Sbjct: 127 EDQLTHLDELGIRAESLNSKIPAAKRKMVMSDLYSKKPKIKMLYITPETAATSTFMTILK 186
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+++RGL N + +DEAHC+S WGHDFRP Y KL +L P V +ALTATA V+KD+
Sbjct: 187 NLNNRGLFNGIVVDEAHCVSQWGHDFRPCYLKLGALHKEYPSVACVALTATATDNVRKDI 246
Query: 212 MESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK--------ANGDTCA 261
++ L ++ P+ ++ R NLFY+V YKD+L+D L LK N C
Sbjct: 247 IQQLHMRAPVTEFRAGCFRENLFYDVVYKDVLEDPLGHLKDFGLKLLQKDEALGNASGCG 306
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R C ++ LS G+ AYH G+ R+SV + W++ + +V+VAT++FGMG
Sbjct: 307 IVYCRTRDACVTVAGSLSRQGLISRAYHGGMKAADRTSVQEQWMNGQVKVIVATISFGMG 366
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK----- 376
+D+ VR V H+NIPKSM +YQESGRAGRD +PS+ LYY +R ++ F++++
Sbjct: 367 VDKATVRFVAHYNIPKSMAGYYQESGRAGRDGIPSRCRLYYSRQERNQVAFLITREMACA 426
Query: 377 NQSKNSQSFSTRE-RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
N K + FS+ + SK S+ F ++ +F R+ +
Sbjct: 427 NSKKRKRKFSSSPGKPSKASMQSFEALV-----KFCEEAKCRHESI-------------- 467
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVL----QKNHFSQIFISSQ-- 489
+ + ++P C + CD CK P ++ K + E+ ++ +KNH + +I
Sbjct: 468 ---AKYFDDKLPS--CGSMCDVCKTPEVVKKRIDEMQRGIMGGPAKKNHMGRTYIEKNPL 522
Query: 490 -----DMTDGGQY 497
D+ GG+Y
Sbjct: 523 NVHDDDLYGGGRY 535
>gi|334322907|ref|XP_001377617.2| PREDICTED: ATP-dependent DNA helicase Q5 [Monodelphis domestica]
Length = 996
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 203/508 (39%), Positives = 290/508 (57%), Gaps = 49/508 (9%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+S
Sbjct: 19 RTLKKIFGFDSFKTNLQENATMAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVIS 78
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L + L+S + Q + KI DL+ KP ++LY+TPE+ A+
Sbjct: 79 PLIALIQDQVDHLLALKVHVCSLNSKLSAQERKKILMDLEKEKPQTKILYITPEMAASAS 138
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LRN +PD P +ALTATA
Sbjct: 139 FQPILNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRNRIPDAPCVALTATATQ 198
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGD----- 258
KVQ+DV+ +L L+ P+ + K+S R NLFY+V++KDLL D Y +L LKA G
Sbjct: 199 KVQEDVVTALKLRQPVAIFKTSCFRANLFYDVQFKDLLGDPYGNLKDFCLKALGQKNDKG 258
Query: 259 ---TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+C I+YC R C++L+ LS+ G+ AYHAGL + R V ++W+ + V+VAT
Sbjct: 259 AFSSCGIIYCRTREACEQLATELSSRGVKAKAYHAGLKAEDRMLVQNEWMEEKVPVIVAT 318
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD LPS LYY DR ++ F++
Sbjct: 319 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGLPSWCRLYYSRKDRDQVSFLIK 378
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K SK + ++ S K S++ F V+D F LG R+ + +
Sbjct: 379 KEISKLQEKRGNKD-SDKASMAAFEAVVD-----FCEKLGCRH-------------AAIA 419
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF---------SQIF 485
Y+ P C CD CK P + K L L S+ K S+++
Sbjct: 420 KYFG-----DAPPP-CFKGCDHCKSPGAIKKQLDALECSSSWSKTQIRCSRGNDSDSELY 473
Query: 486 ISSQDMTDG-GQYSEFWNRDDEASGSEE 512
+ DG G+Y E ++ A GS+E
Sbjct: 474 EGGRRGNDGFGRYDEDTG-NNRAEGSDE 500
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 254/399 (63%), Gaps = 25/399 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+N Q +K+ QVLD A R S VLG
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 252/399 (63%), Gaps = 25/399 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L+ HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGQKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+N Q +K+ QVLD A R S VLG
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|167540323|ref|XP_001741831.1| ATP-dependent DNA helicase recQ [Entamoeba dispar SAW760]
gi|165893416|gb|EDR21673.1| ATP-dependent DNA helicase recQ, putative [Entamoeba dispar SAW760]
Length = 508
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 221/336 (65%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTVVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSLLNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA PKV++D+++
Sbjct: 152 YSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATPKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPKIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W + VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWENGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
NIPK++E F QE+GRAGRD P++S++ + DD R
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER 367
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 250/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R SRVLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGTECRRSRVLG 385
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 250/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R SRVLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGTECRRSRVLG 385
>gi|67475629|ref|XP_653505.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|56470462|gb|EAL48119.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|449702365|gb|EMD43019.1| ATP-dependent DNA helicase recQ, putative [Entamoeba histolytica
KU27]
Length = 509
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA KV++D+++
Sbjct: 152 YSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATSKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPQIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W S VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
NIPK++E F QE+GRAGRD P++S++ + DD R
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER 367
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 249/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E+L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 ESLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K + IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHTASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQKGS-GIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI YHAG++D+ RS +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R S VLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|407040860|gb|EKE40365.1| recQ family DNA helicase [Entamoeba nuttalli P19]
Length = 508
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 159/336 (47%), Positives = 220/336 (65%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA KV++D+++
Sbjct: 152 YSVKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATSKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPQIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W S VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
NIPK++E F QE+GRAGRD P++S++ + DD R
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER 367
>gi|194706042|gb|ACF87105.1| unknown [Zea mays]
Length = 406
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 162/233 (69%), Positives = 190/233 (81%), Gaps = 4/233 (1%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
K L ++ S +K P + L +L +FG++ FR KQL+AI+AVLSGRDCFCLMPT
Sbjct: 2 KGVLPIKGASGREKKAP----KELESVLNRYFGYSGFRGKQLEAIEAVLSGRDCFCLMPT 57
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GGGKSMCYQIPAL K GIVLV+ PLIALMENQV LK KG+ EFLSSTQ K +I+E
Sbjct: 58 GGGKSMCYQIPALVKTGIVLVIPPLIALMENQVASLKNKGVPAEFLSSTQASHTKQRIHE 117
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DLD+G PSL+LLYVTPEL AT FM+KLKK+++RGLL LVAIDEAHCISSWGHDFRPSYR
Sbjct: 118 DLDTGNPSLKLLYVTPELVATSSFMAKLKKLYNRGLLGLVAIDEAHCISSWGHDFRPSYR 177
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
KLSSLR PD+P+LALTATA PKVQKDV+ SLCLQNP++L++SFNRPN+FYE
Sbjct: 178 KLSSLRKQFPDIPLLALTATAVPKVQKDVVSSLCLQNPVILRASFNRPNIFYE 230
>gi|326431575|gb|EGD77145.1| RecQ5 [Salpingoeca sp. ATCC 50818]
Length = 1451
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 233/354 (65%), Gaps = 9/354 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K + G +FR QL+A A L+GRDCF LMPTGGGKS+CYQ+PAL K G+ V+S
Sbjct: 708 MLKAFKRQLGLRKFRPNQLEACNAALTGRDCFILMPTGGGKSLCYQLPALTKKGVTFVIS 767
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+L+++QV L++ I L STQ + +++I+ L +L+YVTPE + A+
Sbjct: 768 PLISLIQDQVSALRQNNIRALCLLSTQDQKTQSQIHRTLCMKDVLCKLIYVTPERIAASH 827
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ +++RGLL+ IDEAHC+S WGHDFRP Y++LS LR + P VP++ALTATA
Sbjct: 828 RLKQTMQNLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLSCLREWFPTVPMMALTATAT 887
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR----YKDLLDDAYADLCSVLKANGDTC 260
+V++D++ +L + N LV + SFNRPNLFYEVR YK +++ ++ + + + C
Sbjct: 888 KRVKRDILMNLKMTNALVFEQSFNRPNLFYEVRKKSSYKKCVEEIGKEIRTRFR---NKC 944
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R C+ +S L+ G YHAG++ R + D W S + ++ AT+AFGM
Sbjct: 945 GIVYCLSRKECETVSQALNQSGHKSLFYHAGMDPADREAYQDQWQSGKVNIMCATIAFGM 1004
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373
GID+ DVR V HF++PKSME +YQE+GRAGRD P+ +LYY D+ + M I
Sbjct: 1005 GIDKPDVRFVFHFSLPKSMEGYYQEAGRAGRDGKPAVCVLYYNYGDKAKHMRLI 1058
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 252/401 (62%), Gaps = 16/401 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K + IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQKGS-GIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI YHAG++D+ RS +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDF--------SQVLDVAGKRFSRVLGN 416
+ R + + D+ S VL G+ FS GN
Sbjct: 360 Q---KARQQLRQVLDYAEGTECRRSSVLGYFGESFSGNCGN 397
>gi|290490730|dbj|BAI79325.1| RecQ5 helicase [Gallus gallus]
Length = 1052
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 204/512 (39%), Positives = 283/512 (55%), Gaps = 50/512 (9%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L FG F+ Q A AV+ G RD F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGERDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 83 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS 142
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA
Sbjct: 143 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATK 202
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+VQ D++ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T
Sbjct: 203 QVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTG 262
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 263 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 322
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 323 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 382
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K SK + T + S K ++ F ++ F LG R+ I + V
Sbjct: 383 KELSKIQEKKGTLKESDKSVMTAFDAIVS-----FCEELGCRH------AAIAKYFGDV- 430
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI----SSQDM 491
C CD CK+P + + L L N++S+ I SS D
Sbjct: 431 ------------TPPCNKCCDYCKNPEAVKRQLEALERC---SNNWSKTCIGPTGSSWDS 475
Query: 492 TD-----GGQYS--EFWNRDDEASGSEEDISD 516
D GG+ F D+E+SG+ ++ ++
Sbjct: 476 YDPELYEGGRRGCRGFSRYDEESSGNGDEANE 507
>gi|410902085|ref|XP_003964525.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Takifugu rubripes]
Length = 954
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/506 (36%), Positives = 280/506 (55%), Gaps = 46/506 (9%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L ++L HFG FR K Q D ++AV+ G RD F MPTG GKS+CYQ+PA+ GI +V
Sbjct: 6 LKQVLHTHFGFENFRSKIQEDIVKAVVKGDRDVFVCMPTGAGKSLCYQLPAVLAQGITMV 65
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIAL+++QV LK I ++S + I DL S P L+LLY+TPE+ A+
Sbjct: 66 VSPLIALIQDQVDRLKSLNIPACSINSKLPAGERRLILADLGSSSPKLKLLYITPEMVAS 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F L + SRGLL+ +A+DEAHC+S WGHDFRP Y KL SLR +P VP LALTATA
Sbjct: 126 PSFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGSLRARMPGVPCLALTATA 185
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK--------A 255
VQ+D+++SL + +PL + R NL Y+V +++++ + Y L + +K +
Sbjct: 186 PKNVQEDIVKSLNMCSPLSFLTPVFRSNLHYDVIFREIVPNPYVHLYAFIKKALEQEKNS 245
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N C IVYC R C+ ++ L+ G+ AYHAGL R+ V ++W+ + V+VAT
Sbjct: 246 NPQGCGIVYCRTREACETVAYQLTKLGVLAKAYHAGLKAGDRTEVQNEWMQGKVLVIVAT 305
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ VR V H+N+ KS+ ++YQESGRAGRD LPS +YY D+ ++ F++
Sbjct: 306 ISFGMGVDKATVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRIYYSPRDKEQINFLIH 365
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSR--VLGNRYWDVWPVLPIGWFLSL 433
+ + + + + K +I+DF ++ + R + + D P
Sbjct: 366 QEVKRKQEKRGFEKDTDKAAITDFEAMVSFCVQEACRHGTISRFFGDKAPN--------- 416
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVL------QKNHFSQIFIS 487
C +CD C++P + L ++AVL Q N F
Sbjct: 417 -----------------CAGACDYCRNPKAVRAQLE--SAAVLSTKLQAQSNEPRGAFGF 457
Query: 488 SQDMTDGGQYSEFWNRDDEASGSEED 513
D+ +GG+ + R ++ S +D
Sbjct: 458 QSDLYEGGKKGYGFERQEDGGHSGDD 483
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 250/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R S VLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGNECRRSSVLG 385
>gi|326930778|ref|XP_003211518.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Meleagris gallopavo]
Length = 1055
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 202/512 (39%), Positives = 286/512 (55%), Gaps = 50/512 (9%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL + KP ++LLY+TPE+ A
Sbjct: 83 PLIALIQDQVDHLLALKIKACSLNSKVSAQEKKTILADLANEKPQIKLLYITPEMAAASS 142
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR+ +P+ P +ALTATA
Sbjct: 143 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRSRIPNTPCVALTATATK 202
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+VQ+D++ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T
Sbjct: 203 QVQEDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTG 262
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 263 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 322
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 323 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 382
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K SK + T + S K +++ F ++ F LG R+ I + V
Sbjct: 383 KELSKIQEKKGTLKESDKAAMTAFDAIVS-----FCEELGCRH------AAIAKYFGDV- 430
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI----SSQDM 491
C CD CK+P + + L L N++S+ I SS D
Sbjct: 431 ------------TPPCNKCCDYCKNPEAVKRQLEALERC---SNNWSKTCIGPTGSSWDS 475
Query: 492 TD-----GGQY--SEFWNRDDEASGSEEDISD 516
D GG+ F D+E+SG+ ++ ++
Sbjct: 476 YDPELYEGGRRGCGGFSRYDEESSGNGDEANE 507
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 249/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K + IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKT--SKSYQQLYQYIKGQKGS-GIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI+ YHAG+ D+ RS +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R S VLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|348533151|ref|XP_003454069.1| PREDICTED: ATP-dependent DNA helicase Q5 [Oreochromis niloticus]
Length = 1040
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 195/504 (38%), Positives = 278/504 (55%), Gaps = 41/504 (8%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L + L+ HFG FR K Q D ++AV G RD F MPTG GKS+CYQ+PA+ GI LV
Sbjct: 5 LKQALKTHFGFDSFRSKLQEDVVKAVHRGDRDVFVCMPTGAGKSLCYQLPAVLAEGITLV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIAL+++QV LKE I ++S + I DL S P L+LLY+TPE+ A+
Sbjct: 65 ISPLIALIQDQVDHLKELNIPACSINSKLLANERRLILADLGSSNPKLKLLYITPEMVAS 124
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F L + SRGLL+ +A+DEAHC+S WGHDFRP Y KL LR L VP LALTATA
Sbjct: 125 PSFHPCLMDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRARLQGVPCLALTATA 184
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK--------A 255
VQ+D+++SL L +PL + R NL Y+V +++LL + Y L + +K +
Sbjct: 185 PKNVQEDIIQSLKLSSPLSFLTPVFRSNLHYDVIFRELLPNPYVHLHAFIKKTLSLGAGS 244
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
NG C IVYC R C+ ++ L+ G+ YHAGL R+ V ++W+ + V+VAT
Sbjct: 245 NGQGCGIVYCRTREGCETVAHQLTKLGVVAKPYHAGLKPTDRTGVQNEWMQGKVLVIVAT 304
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS YY D+ ++ F++
Sbjct: 305 ISFGMGVDKANVRFVAHWNLAKSLASYYQESGRAGRDGLPSACRTYYSPRDKEQINFLIR 364
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
+ ++ + + S K +++DF ++ F G R+ I F
Sbjct: 365 QEVARKQEKRGFAKDSDKTAMTDFEAMVS-----FCEQEGCRHAT------ISKFFGNT- 412
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQ------IFISSQ 489
C +CD C++P L+ L E +A+ K +Q F
Sbjct: 413 ------------APNCAGACDYCRNPKLVRAQL-ERAAALSTKIGAAQSSEPKGAFGFQP 459
Query: 490 DMTDGGQYSEFWNRDDEASGSEED 513
D GG+ + R DE G ED
Sbjct: 460 DTYGGGKKGYGFERYDEGEGYSED 483
>gi|241999220|ref|XP_002434253.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215496012|gb|EEC05653.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 556
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 163/350 (46%), Positives = 221/350 (63%), Gaps = 5/350 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG QFR QL+AI A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +L+ +
Sbjct: 26 FGLKQFRLNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAVVSEGVTVVISPLKSLIYD 85
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
QV L + LS +Y DL S +P LRLLYVTPE + G + L +
Sbjct: 86 QVQKLGSLDVPANHLSGDSD---DFSVYSDLRSTQPRLRLLYVTPEKVSASGRLLDALSR 142
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+ G L+ IDEAHC+S WGHDFRP Y+KLS LR VP++ALTATA P+V+ D++
Sbjct: 143 LHANGRLSRFVIDEAHCVSQWGHDFRPDYKKLSVLREKFSGVPMMALTATATPRVRTDIL 202
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
L +++P SFNRPNL YE+R K ++ V++ I+YC R C
Sbjct: 203 HQLGMRDPKWFLQSFNRPNLRYEIRLKSGKVGTAREVLEVVEGKFARQSGIIYCFSRKEC 262
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
D+L+ LS G+ AYHAGL+D R++V WI + +VV AT+AFGMG+D+ DVR V
Sbjct: 263 DDLAEELSKNGVPAVAYHAGLDDPKRNAVQQRWIDDKVRVVCATIAFGMGVDKPDVRFVV 322
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
H+ +PKSME FYQESGRAGRD P+ LL+Y D +R+ ++ +++ N
Sbjct: 323 HYTLPKSMEGFYQESGRAGRDGRPASCLLFYSFADVQRIRRMVEMDKASN 372
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 249/395 (63%), Gaps = 17/395 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L + GI FL+ST + + + GK ++LLYV PE +
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGK--IKLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K IV
Sbjct: 183 TQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMGI+
Sbjct: 240 YCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGK---RFSRVLG 415
+K+ QVLD A R S VLG
Sbjct: 360 ---------QKARQQLRQVLDYAEGTECRRSSVLG 385
>gi|345494123|ref|XP_001606008.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1223
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 170/360 (47%), Positives = 225/360 (62%), Gaps = 7/360 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL PGI +VVS
Sbjct: 472 MMSFFRQKFGLFNFRPNQLQAINAALLGFDCFILMPTGGGKSLCYQLPALLTPGITIVVS 531
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q L I +S QT IY ++ P L+LLYVTPE L+A+
Sbjct: 532 PLKSLILDQTQKLISLDIPAAHMSGDQTDSQTDAIYREMSKKDPVLKLLYVTPEKLSASQ 591
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++ RGLL IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 592 KLCNALTALYERGLLGRFVIDEAHCVSQWGHDFRPDYKKLQVLRVKYPNVPTMALTATAT 651
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L +Q+P SSFNRPNL Y V K +A ++ ++KA D C IV
Sbjct: 652 PRVRTDILHQLGMQSPKWFMSSFNRPNLRYSVISKKG-KNASDEVIGLIKAKFKDDCGIV 710
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CD + + GI YHAGL+DK RS + WIS + +VV AT+AFGMGID
Sbjct: 711 YCLSRNDCDTYAEQMKINGIKAMGYHAGLSDKQRSDIQGRWISEQIKVVCATIAFGMGID 770
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEFILSKNQS 379
+ +VR V H ++PKS+E +YQESGRAGRD ++ +L+Y D R+ +E ++ N++
Sbjct: 771 KPNVRFVIHASLPKSIEGYYQESGRAGRDSENAECILFYNYADMYRHRKMIEMDVASNKT 830
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 235/361 (65%), Gaps = 9/361 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG +FR Q + I+ VL+ RD F LMPTGGGKS+CYQ+PAL PGI LV+SPLI
Sbjct: 4 ILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKSLCYQLPALKFPGITLVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV LK G+A EFL+S+ + +I +++ GK +++LY+ PE A+ GF +
Sbjct: 64 ALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGK--VKILYIAPERMASNGFEN 121
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+ + +L+A+DEAHCIS WGHDFRP YR L L++ P VPI+ALTATA KV+
Sbjct: 122 FLQNLKP----SLIAVDEAHCISEWGHDFRPDYRNLRRLKDIFPGVPIMALTATATEKVR 177
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L +NP + SSFNR NLF+ V K +++ L +L+ I+YC R
Sbjct: 178 QDILNQLNFENPNIFISSFNRDNLFFRVIEKK---NSFEKLLKLLENRRKESVIIYCFSR 234
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ L+ L + G S AYHAGL+ R +D+I + ++VAT+AFGMGID+ DVR
Sbjct: 235 KDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIAFGMGIDKPDVR 294
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
+V H+ PKS+E +YQE GRAGRD LP++ +++Y D R+ + ++ +N + + R
Sbjct: 295 MVVHYTFPKSLEGYYQEVGRAGRDGLPAECVMFYTFADARKHRYFINVMDDENLKRQTER 354
Query: 389 E 389
+
Sbjct: 355 K 355
>gi|363740670|ref|XP_001233565.2| PREDICTED: ATP-dependent DNA helicase Q5 [Gallus gallus]
Length = 1052
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 203/512 (39%), Positives = 283/512 (55%), Gaps = 50/512 (9%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 83 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS 142
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA
Sbjct: 143 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATK 202
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+VQ D++ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T
Sbjct: 203 QVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTG 262
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 263 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 322
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 323 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 382
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K SK + T + S K ++ F ++ F LG R+ I + V
Sbjct: 383 KELSKIQEKKGTLKESDKSVMTAFDAIVS-----FCEELGCRH------AAIAKYFGDV- 430
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI----SSQDM 491
C CD CK+P + + L L N++S+ I SS D
Sbjct: 431 ------------TPPCNKCCDYCKNPEAVKRQLEALERC---SNNWSKTCIGPTGSSWDS 475
Query: 492 TD-----GGQYS--EFWNRDDEASGSEEDISD 516
D GG+ F D+E+SG+ ++ ++
Sbjct: 476 YDPELYEGGRRGCRGFSRYDEESSGNGDEANE 507
>gi|299743122|ref|XP_001835556.2| hypothetical protein CC1G_03338 [Coprinopsis cinerea okayama7#130]
gi|298405510|gb|EAU86127.2| hypothetical protein CC1G_03338 [Coprinopsis cinerea okayama7#130]
Length = 787
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 234/356 (65%), Gaps = 12/356 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIV 81
+E + L+ FG++ ++ KQ + ++A +SG+D + PTG GKS+C+QIPA+A KPG+
Sbjct: 17 EERCLNALKRTFGYSSYKGKQKEIVEAAVSGQDVLVVAPTGMGKSLCFQIPAIADKPGVS 76
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPL+ALM+NQV L+ +G+ SS + + + +I EDL+S P LRLLYVTPE
Sbjct: 77 LVVSPLLALMKNQVETLRGRGVPTASFSSETSKEERQEITEDLESDTPQLRLLYVTPEKL 136
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+T F+ + +H G LN + +DEAHCIS WGHDFR YR++ S RN PDVPI+ALTA
Sbjct: 137 STQEFLRLMDHLHDVGQLNRLVVDEAHCISEWGHDFRAEYRRIGSFRNRYPDVPIMALTA 196
Query: 202 TAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRY------KDLLDDAYADLCSVL 253
TA P VQ D++ +L L + + ++ FNR NL+YEVRY K ++D + + ++
Sbjct: 197 TATPDVQSDIIHNLKLSSDNLFRALHPFNRANLYYEVRYLSDRNPKTRMEDIHKYIKTLY 256
Query: 254 KANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQ 310
G +C I+YC + C+EL+ +L GI+ +Y+ G+ + L W+ S
Sbjct: 257 TRRGKVSCGIIYCRTKAACEELTQFLRKNGINAGSYYRGIPPTKLDATLRRWLDGSGEID 316
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VVVAT+AFGMGID+ DVR + HF++PKS E FYQE+GRAGRD LP+K +LY+ +D
Sbjct: 317 VVVATIAFGMGIDKGDVRYIIHFDLPKSFEGFYQETGRAGRDGLPAKCVLYFSRED 372
>gi|332023927|gb|EGI64145.1| Bloom syndrome protein-like protein [Acromyrmex echinatior]
Length = 1254
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/371 (46%), Positives = 232/371 (62%), Gaps = 9/371 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 513 HSQEML-KIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLNVGL 571
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LS + T IY +L +P+L++LYVTPE
Sbjct: 572 TIVISPLKSLILDQVQKLISLDIPAAHLSGSITDNQAEAIYRELSKKEPALKILYVTPEK 631
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ R LL IDEAHC+S WGHDFRP Y+KL LRN P VP +AL
Sbjct: 632 ISASQKFCNTLTILYERELLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRNNYPKVPTMAL 691
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + NP SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 692 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIISKKGKNCSDEIVAMIMTKFK-- 749
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+TC IVYCL R C++ +A++ GI +YHAGL+D RS+ WIS V+ AT+
Sbjct: 750 -NTCGIVYCLSRKDCEDYAAHMKKNGIKVLSYHAGLSDTQRSNCQGKWISDEVHVICATI 808
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E++YQESGRAGRD + +L+Y D R+ + +
Sbjct: 809 AFGMGIDKPNVRFVIHAALPKSIESYYQESGRAGRDGEIADCILFYHYADMHRIRKMFEQ 868
Query: 377 NQSKNSQSFST 387
+ + N Q ST
Sbjct: 869 D-NPNPQVIST 878
>gi|384253210|gb|EIE26685.1| ATP-dependent DNA helicase, partial [Coccomyxa subellipsoidea
C-169]
Length = 513
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 228/356 (64%), Gaps = 8/356 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+A FR QL+AI A + G DCF LMPTGGGKS+CYQ+PAL G+ +V+SPL++L+++
Sbjct: 9 FGNASFRPNQLEAINATIKGNDCFVLMPTGGGKSLCYQLPALLTNGVTVVISPLVSLIQD 68
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKK 152
QV L++ GIA +LS TQ + I + L P +R+L+VTPE A + M L
Sbjct: 69 QVFHLQQAGIACGYLSGTQDYEDSRSIMQRLQQTPPDIRVLFVTPEKVARSDYLMRTLDV 128
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+HSR LL+ VA+DEAHC+S WGHDFRP Y+ LS + P VP+LALTATA P+VQ DV+
Sbjct: 129 LHSRRLLDRVAVDEAHCVSQWGHDFRPDYKGLSVFKRRYPMVPLLALTATATPRVQHDVV 188
Query: 213 ESLCLQNPLVLKSSFNRPNLFY---EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+ L L++ +V +SSFNR NL Y + K++ D + C + C IVYCL R
Sbjct: 189 QQLSLKHCVVFRSSFNRQNLRYGKFDDAIKEMEDRIARNFCHHGRVQ---CGIVYCLSRN 245
Query: 270 TCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++A L C YHA L + R V +W R Q++VAT+AFGMGI++ DVR
Sbjct: 246 DCEKVAAELQEYSRGCVFHYHAALTQQEREEVQANWTHDRMQIIVATIAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
V HF++PKS+E ++QE+GR GRD + +LYY D RM +L ++ + + S
Sbjct: 306 FVMHFSVPKSLEGYHQETGRGGRDGKVATCILYYSYADAVRMRHMLKQSAEEQNTS 361
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 246/382 (64%), Gaps = 8/382 (2%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M ++Q++ N+P +L + L+ +FG+ FR Q IQ L +D +MPTGGGKS
Sbjct: 1 MSVSNQSEFNQP-----SLEQHLKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKS 55
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+C+Q+PAL KPG+ +VVSPLI+LM++QV LK+ GIA FL+ST + + D+ G
Sbjct: 56 LCFQMPALLKPGLTIVVSPLISLMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILG 115
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
K ++LLYV PE + F+ L+ I S+ ++ AIDEAHC+S WGHDFRP YR+L L
Sbjct: 116 K--IKLLYVAPERLLSEKFLEFLELISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLKLL 173
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA 247
R PDVPI+ALTATA +V++D+ L LQ P + +SF R NL+YEVR K + +A
Sbjct: 174 RETYPDVPIMALTATATKRVREDITTQLNLQKPYIHIASFFRSNLYYEVRQKTSAKNTFA 233
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
++ +++ G + IVYC R DE++ L +S AYHAG+ D+ R++ +I
Sbjct: 234 EILQIIRTIGGS-GIVYCNSRKRVDEIAYKLRQNNVSALAYHAGMTDEERTTNQTKFIRD 292
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
V+VATVAFGMGID+ DVR V H+++ K++E +YQE+GR+GRD P++ +L++ D+
Sbjct: 293 DVDVIVATVAFGMGIDKPDVRFVIHYDLSKNIEGYYQETGRSGRDGEPAQCILFFSYGDK 352
Query: 368 RRMEFILSKNQSKNSQSFSTRE 389
R +E+++ + + Q + ++
Sbjct: 353 RSIEYLIGQKVDEQEQRIAEQQ 374
>gi|449283029|gb|EMC89732.1| ATP-dependent DNA helicase Q5 [Columba livia]
Length = 1016
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 200/512 (39%), Positives = 284/512 (55%), Gaps = 50/512 (9%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K LR FG F+ Q A V G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 15 KTLRRVFGFETFKTSLQESATMTVARGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 74
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 75 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQVKLLYITPEMAAASS 134
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA
Sbjct: 135 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATK 194
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC----SVLKANG 257
+VQ+D++ +L L+ PL K+ R NLFY+V++K+LL D Y D C V ++G
Sbjct: 195 QVQEDIVAALKLKQPLSTFKTPCFRSNLFYDVQFKELLTDPYTNLKDFCLKALEVKNSSG 254
Query: 258 --DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 255 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 314
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 315 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 374
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K + + T + S K ++ F +++ F LG R+ I + V
Sbjct: 375 KELANIQEKKGTLKESDKAVMTAFDAIVN-----FCEELGCRH------AAIAKYFGDV- 422
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI----SSQDM 491
C CD CK+P + + L L N +S+ I SS+D
Sbjct: 423 ------------TPPCNKCCDYCKNPGAVKRQLESLERCT---NSWSKTCIGPTGSSRDN 467
Query: 492 TD-----GGQYS--EFWNRDDEASGSEEDISD 516
D GG+ F + D+E+SG+ ++ ++
Sbjct: 468 YDPELYEGGRRGCRGFSSYDEESSGNGDEANE 499
>gi|292612098|ref|XP_694922.4| PREDICTED: ATP-dependent DNA helicase Q5-like [Danio rerio]
Length = 936
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 194/505 (38%), Positives = 286/505 (56%), Gaps = 40/505 (7%)
Query: 28 KLLRWHFGHAQFRDKQLD-AIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ HFG +FR +Q + A+ A+L G RD F MPTG GKS+CYQ+PAL G+ LV+S
Sbjct: 6 RALKTHFGFEKFRSRQQEEAVNALLQGDRDVFVCMPTGAGKSLCYQLPALMASGVTLVIS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV LK + ++S + + +I DL+S P L+LLY+TPE+ A+P
Sbjct: 66 PLIALIQDQVEHLKALNVPARSINSKLPLAERRQILADLESETPRLKLLYITPEMVASPS 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SRGLL +A+DEAHC+S WGHDFRP Y KL LR+ L + +ALTATA
Sbjct: 126 FQPVLSSLSSRGLLGYLAVDEAHCVSQWGHDFRPDYLKLGDLRSRLQGIRCIALTATAPK 185
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDT---- 259
+V++D+ SL L++PLV + R NL Y+V ++DLL + Y L + K G+T
Sbjct: 186 RVKEDIERSLRLRSPLVFSTPVFRKNLKYDVIFRDLLPEPYVHLLAFAKEALGGNTAEKG 245
Query: 260 ---CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
C IVYC R +C+E++ L+ GI+ YHAGL RS DW++ + ++VAT+
Sbjct: 246 FAGCGIVYCRTRESCEEVAHKLTKLGIAAKPYHAGLKSGDRSENQADWMADKVPIIVATI 305
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
+FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS +YY DR ++ F++ K
Sbjct: 306 SFGMGVDKANVRFVVHWNLAKSLASYYQESGRAGRDGLPSSCRIYYSPKDRDQLNFLIRK 365
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLL 436
S+ + + + K I DF ++ F G R+ +
Sbjct: 366 EISRKQEKRGSEKEQDKAPILDFEAMV-----AFCEQEGCRHATI--------------- 405
Query: 437 YYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKN--HFSQ---IFISSQDM 491
S + P C +CD C+ P L+ L + + N H ++ F ++
Sbjct: 406 --STFFGNEKPN--CAGACDFCRDPKLVRAQLARAAALSTRTNPTHSAEPRGPFGFDPEL 461
Query: 492 TDGGQYSEFWNRDDEASGSEEDISD 516
GG+ + R DE GSEED S+
Sbjct: 462 YAGGRKGYGFERHDEEYGSEEDDSE 486
>gi|224075156|ref|XP_002190226.1| PREDICTED: ATP-dependent DNA helicase Q5 [Taeniopygia guttata]
Length = 1087
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 189/451 (41%), Positives = 258/451 (57%), Gaps = 36/451 (7%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 61 KTLQKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 120
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 121 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQVKLLYITPEMAAASS 180
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L SLR+ +P P +ALTATA
Sbjct: 181 FQPTLNSLVSRNLLSYLVIDEAHCVSQWGHDFRPDYLRLGSLRSRIPHTPCVALTATATK 240
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+VQ+DV+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ G T
Sbjct: 241 QVQEDVVAALKLKQPLSTFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKGATG 300
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 301 VYSGCGIVYCRMRDVCDQLAIELSYRGLKAKAYHAGLKAAERTSVQNEWMEEKIPVIVAT 360
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 361 ISFGMGVDKGNVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 420
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K S + T + S K ++ F ++ F LG R+ I + V
Sbjct: 421 KELSNIQEKKGTLKESDKAVMTAFDAIVS-----FCEELGCRH------AAIAKYFGDV- 468
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAK 466
C CD CK+P + +
Sbjct: 469 ------------TPPCNKCCDFCKNPEAVKR 487
>gi|345495259|ref|XP_001605753.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1426
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 163/362 (45%), Positives = 225/362 (62%), Gaps = 2/362 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++ + R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 662 HSRE-MMNVFRQKFGLYSFRPNQLQAINAAICGYDCFILMPTGGGKSLCYQLPALLTPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+VVSPL +L+ +QV L I+ LSS+ T + +Y +L +PSL+LLY+TPE
Sbjct: 721 TIVVSPLKSLIIDQVQKLISLDISAAHLSSSVTDEQAQSVYRELAKKEPSLKLLYLTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ L+ ++ RG+L IDEAHC+S WGHDFRP Y+KL LR P VP +AL
Sbjct: 781 ISASQKIGDALRALYERGMLARFVIDEAHCVSQWGHDFRPDYKKLQLLRKNYPKVPTMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+ D++ L + NP SSFNRPNL Y V K + + + + +
Sbjct: 841 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLHYVVTSKKGKNSTEEIIEMIKRDFRND 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C IVYCL R CD + + + GI +YHAGL+D R + WIS + +VV AT+AFG
Sbjct: 901 CGIVYCLSRKDCDSFADTMKSNGIKALSYHAGLSDHQRLEIQGRWISEQIKVVCATIAFG 960
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H +PKS+E +YQESGRAGRD ++ +L+Y D R ++ + +
Sbjct: 961 MGIDKPNVRFVIHATLPKSIEGYYQESGRAGRDGENAECILFYHYGDMMRHRKMIEGDST 1020
Query: 380 KN 381
N
Sbjct: 1021 SN 1022
>gi|443725010|gb|ELU12752.1| hypothetical protein CAPTEDRAFT_102278, partial [Capitella teleta]
Length = 622
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/390 (44%), Positives = 239/390 (61%), Gaps = 18/390 (4%)
Query: 28 KLLRWHFGHAQFR-DKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+LL+ FGH +FR D Q +A++A V G D F MPTG GKS+CYQ+PA+AK GI V+S
Sbjct: 11 ELLKSVFGHDEFRSDLQRNAVEAAVRGGVDIFVSMPTGAGKSLCYQLPAVAKRGITFVIS 70
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++Q+ L+ I L+S + + + + DL+ +P +LLY+TPE AT G
Sbjct: 71 PLIALMQDQLEHLQALNIPANTLNSKMSAEERKAVMYDLNRERPHTKLLYITPEQAATSG 130
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+S + + + L+ +DEAHC+S WGHDFRP Y KL + R L VP +ALTATA P
Sbjct: 131 FISITEMLMKKKLVEFFVVDEAHCVSQWGHDFRPDYLKLGTYRKKLLGVPCIALTATATP 190
Query: 206 KVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV--------LKA- 255
V D+ SL L+ P+ K++ RPNLFY+V +KDLL+D Y DL LKA
Sbjct: 191 HVVGDIKNSLKLKAPVASFKATCFRPNLFYDVVFKDLLNDPYEDLRRFSLKSLDVDLKAD 250
Query: 256 ------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
N C IVYC R +C E+++ L++ G+ YHAGLN R+ DW+ R
Sbjct: 251 LKEVDWNTKGCGIVYCRTRESCGEVASRLTSKGVPAKPYHAGLNASLRTETQTDWMEGRV 310
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V+ AT++FGMG+D+ +VR V H+ +PKSM +YQESGRAGRD S LYY DDR
Sbjct: 311 AVIAATISFGMGVDKANVRFVAHWTLPKSMAGYYQESGRAGRDGRRSFCRLYYTKDDRNT 370
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDF 399
+ F+L K + S+ ++ E +K ++ F
Sbjct: 371 VAFLLRKENIRPSKEGASAEARTKAALQSF 400
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/417 (40%), Positives = 254/417 (60%), Gaps = 6/417 (1%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
+P+ + + Q+ + ++L + L+ +FG+ FR Q + I A L+GRD +MPTG
Sbjct: 12 TPIHLSPPKEEQEKTVMSNSDSLQQALKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTG 71
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GGKS+C+Q+PAL K G+ +VVSPLIALM++QV LKE GI FL+ST + + + +
Sbjct: 72 GGKSICFQLPALLKTGVTIVVSPLIALMQDQVTALKENGIGATFLNSTLSGRETNQRSQA 131
Query: 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183
+ +G +++L+YV PE F+ L + ++ + AIDEAHC+S WGHDFRP YR+
Sbjct: 132 ILNG--AIKLIYVAPERLFAEQFIEFLNIVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQ 189
Query: 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243
LS LR + PDVP++ LTATA +V++D+++ L LQ P V +SFNR NL+YEV K +
Sbjct: 190 LSRLRQFYPDVPVIGLTATATERVREDIIQQLDLQQPYVHVASFNRDNLYYEVVPKQGTE 249
Query: 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
+Y +L +K IVYCL R +E++ L GI+ YHAGL+ K R
Sbjct: 250 QSYVNLLQQIK-RMQGSGIVYCLSRKRVNEIAERLREDGIAAIPYHAGLSAKEREENQTR 308
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
WI QV+VAT+AFGMGI++ DVR V H+++PK++E +YQESGRAGRD S L+ G
Sbjct: 309 WIRDDVQVMVATIAFGMGINKPDVRFVIHYDLPKNIEGYYQESGRAGRDGEDSHCTLFLG 368
Query: 364 MDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVA-GKRFSRVLGNRYW 419
D ++++++ Q + + E + + QV+D A G R + RY+
Sbjct: 369 YQDLETIKYLIA--QKVDPHTNEPLEAEQRIAQQQLRQVVDYAEGLACRRTILLRYF 423
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 245/377 (64%), Gaps = 10/377 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ +FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV GL+ I FL SS +V+++ E + SGK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEGLRNNNINATFLNSSLNPYKVRSR-EEAILSGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + + AIDEAHC+S WGHDFRP YR++ SLR PDVP LALTATA
Sbjct: 124 RFLPFLDLVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + AI+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRSKT--KSAYAELLELIREN-EGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L IS +YHAGL+D+ RSS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF++P+++E++YQESGRAGRD PS+ L++ D + +E+ + + Q
Sbjct: 301 PDVRLVIHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFSDIKTIEWSIDQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQ 401
+ + + + D++Q
Sbjct: 361 IA---KQQLRQVIDYAQ 374
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/364 (43%), Positives = 231/364 (63%), Gaps = 9/364 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+++FR Q D IQ VL G+D F LMPTGGGKS+CYQ+PAL G+ +V+S
Sbjct: 1 MYQTLQKYFGYSEFRPLQKDIIQDVLDGKDTFVLMPTGGGKSLCYQLPALLMDGLTVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV L+ G+ FL+STQ KI +D+ + +++LY+ PE A G
Sbjct: 61 PLISLMKDQVDSLRANGVNAAFLNSTQNYTESRKICDDIATN--DIKILYMAPERLAMSG 118
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S + K ++L AIDE+HCIS WGHDFRP YRKLS L+ P VPI+ALTATA P
Sbjct: 119 TLSMITKAK----VSLFAIDESHCISEWGHDFRPEYRKLSMLKKKFPKVPIIALTATATP 174
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KV++D + L L NP +SFNR NL YE+R K + Y + L+ N I+YC
Sbjct: 175 KVREDTLNQLGLTNPKTYIASFNRSNLLYEIRPKK---ETYDQILQYLRRNKGKGGIIYC 231
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D ++A L G + YHAGL+D R + +I + ++VAT+AFGMGID+
Sbjct: 232 QSRKNVDTVTAKLRKAGFNALPYHAGLSDTQRGRNQEAFIKDKADIIVATIAFGMGIDKP 291
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+++PK++E +YQE+GR GRD L + +L++ DR R+E+ + + K +
Sbjct: 292 NVRFVIHYDLPKNLEGYYQETGRGGRDGLECECILFFSHGDRYRIEYFVKQKGRKEERDI 351
Query: 386 STRE 389
+ ++
Sbjct: 352 ALKQ 355
>gi|157104176|ref|XP_001648286.1| blooms syndrome DNA helicase [Aedes aegypti]
gi|108880401|gb|EAT44626.1| AAEL004039-PA [Aedes aegypti]
Length = 1406
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/358 (47%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E + +L R FG FR QL I A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 657 HSQE-MAELFRTKFGLQSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPALLTNGV 715
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL +L+ +QV L I LS + + +IY DL S +P ++LLYVTPE
Sbjct: 716 TIVVSPLKSLILDQVNKLSSLDIEAAHLSGNISYAEEQRIYYDLQSPRPKMKLLYVTPEK 775
Query: 141 TATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ G F + L +H+ L IDEAHC+S+WGHDFRP Y+KLS LR P +PI+AL
Sbjct: 776 ISSSGRFQNVLSGLHAMKQLARFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPSIPIMAL 835
Query: 200 TATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA P+V+ DV++ L L++ SFNRPNL Y VR K + + + K
Sbjct: 836 TATANPRVRVDVIKQLRLKSDTKWFLCSFNRPNLKYIVRPKQGVATKQEIIDLIKKKYPR 895
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL + CD+L+A + + GIS +YHAGL+D R S DWI+ + +VV AT+AF
Sbjct: 896 ASGIVYCLAKKDCDQLAAEMKSAGISAKSYHAGLSDSQRESTQKDWIADKTKVVCATIAF 955
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEF 372
GMGID+ DVR V H +IPKS+E +YQE+GRAGRD S +LYY D R+ M+F
Sbjct: 956 GMGIDKPDVRYVIHHSIPKSIEGYYQEAGRAGRDGDFSTCILYYNYSDMLRFRKMMDF 1013
>gi|290991859|ref|XP_002678552.1| predicted protein [Naegleria gruberi]
gi|284092165|gb|EFC45808.1| predicted protein [Naegleria gruberi]
Length = 424
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 158/355 (44%), Positives = 235/355 (66%), Gaps = 7/355 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG FR QL+AI A LSGRD F +MPTGGGKS+CYQ+PA+ + G+ +V+SPL++
Sbjct: 17 FGIPSFRTLQLEAINATLSGRDVFIIMPTGGGKSLCYQLPAIIDVGSSGGVTIVISPLLS 76
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
L+++QV+ L I FL+S Q + IY +L S PS RLLYVTPE ++ + F++
Sbjct: 77 LIQDQVMSLINLDIPAVFLTSEQDSETTKDIYRELGSRNPSFRLLYVTPEKISRSETFLN 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+++H RGL V +DEAHC+S+WGHDFRP YRKL ++ PDVP++ALTATA VQ
Sbjct: 137 ILRRLHERGLFKRVVVDEAHCVSNWGHDFRPDYRKLGIFKDEFPDVPLIALTATATGIVQ 196
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-KANGDTCAIVYCLE 267
+D++ L ++N + LK SFNR NL+YEVR K L+ ++ + K + I+YCL
Sbjct: 197 EDIIHQLKIKNCVSLKGSFNRTNLYYEVRKKQTLEKTAKEISEFINKKYPNQSGIIYCLS 256
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C++++ L+ G Y++ + + V + W +++VAT+AFGMGI++ DV
Sbjct: 257 KKDCEKMAEELTTLGHDVGVYNSDIKAADKQEVHEKWSRDELKIIVATIAFGMGINKPDV 316
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILSKNQSKN 381
R V H ++PKS+E +YQESGRAGRD LPS +L+Y D+ R+ +F+ ++N +K+
Sbjct: 317 RFVIHHSLPKSIEDYYQESGRAGRDGLPSHCILFYSYADKARQQKFLENENTNKS 371
>gi|428213965|ref|YP_007087109.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
gi|428002346|gb|AFY83189.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
Length = 836
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/446 (38%), Positives = 267/446 (59%), Gaps = 40/446 (8%)
Query: 19 PLHEK--EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
PLH L + L+ FGH FR Q + ++A L RD +MPTGGGKS+C+Q+PAL
Sbjct: 6 PLHATAPNQLERSLKHFFGHDSFRPGQREIVEAALQNRDLLIVMPTGGGKSLCFQLPALL 65
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ GI +VVSPLIALM++QV LK GIA FL+ST + + + G+ ++LLYV
Sbjct: 66 RKGITVVVSPLIALMQDQVESLKNNGIACTFLNSTLSWEESRSRETAILQGE--IKLLYV 123
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE + F+ + + ++ ++ AIDEAHC+S WGHDFRP YR++ LR P++P+
Sbjct: 124 APERLLSERFLPFMDLVRAQVGISGFAIDEAHCVSEWGHDFRPEYRQMQLLRQRYPEIPM 183
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA +V++D+ + L L++P + +SFNRPNL+YEVR K+ +Y +L +++ +
Sbjct: 184 MALTATATDRVRQDITQQLALRDPKIHIASFNRPNLYYEVRQKN--KQSYRELVKLIRES 241
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R DE++ L GI YHAG+ND+ RSS +I QV+VAT+
Sbjct: 242 KGS-GIIYCLSRRRVDEVAYKLQREGIDAIPYHAGMNDQERSSNQTRFIRDDAQVIVATI 300
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ DVR V H+++P+++E +YQESGRAGRD P+ +++G D + +E+I+ +
Sbjct: 301 AFGMGINKPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPANCTMFFGYGDIKTIEYIIDQ 360
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLL 436
+ Q + R + I ++S+ +R + +G+F
Sbjct: 361 KTDVDEQRIA---RQQLRQIINYSE--STVCRR--------------TIQLGYF------ 395
Query: 437 YYSFHLLKQIPVSLCKNSCDACKHPN 462
++ P + C+N CD C+HPN
Sbjct: 396 ------GERFPGN-CEN-CDNCRHPN 413
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/360 (46%), Positives = 241/360 (66%), Gaps = 9/360 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRKIIEDALQNRDLLVVMPTGGGKSLCFQLPALVKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNPYQVRSR-EEAILNGK--VRLLYVAPERLMSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L +H + ++ AIDEAHC+S WGHDFRP YR+L SLR+ P VP++ALTATA
Sbjct: 124 RFLPFLDLVHHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRSLRSRYPHVPMIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ + L+ P + +SFNR NL+YEVR K AYA+L +++ D AI+Y
Sbjct: 184 ERVRSDIIQQIGLKQPSIHIASFNRQNLYYEVRPKT--KYAYAELLELIR-EIDGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L +S AYHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKVSVLAYHAGLSDEERSKNQTRFIRDDARVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ S NQ ++Q
Sbjct: 301 PDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFGDIKTIEW--SINQKTDAQE 358
>gi|428320783|ref|YP_007118665.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
gi|428244463|gb|AFZ10249.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
Length = 731
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 246/380 (64%), Gaps = 8/380 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 14 SLEQALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVV 73
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GI FL+ST + Q + GK ++LLYV PE
Sbjct: 74 SPLIALMQDQVEALQDNGIGATFLNSTLSTQETRSRETAILEGK--IKLLYVAPERLLGE 131
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + ++ ++ AIDEAHC+S WGHDFRP YR++ +R+ PD+PI+ALTATA
Sbjct: 132 RFLPFLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMALTATAT 191
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D+++ L L+NP + +SFNRPNL+YEVR K ++A++ +++ G + I+Y
Sbjct: 192 ERVRQDIIQQLTLRNPYIHVASFNRPNLYYEVRPK--TKHSFAEVLQIIQKKGGS-GIIY 248
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L GI+ YHAG+ND R++ +I QV+VAT+AFGMGI++
Sbjct: 249 CLSRKKVEEVAYKLQQSGIAALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINK 308
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++PK++E +YQESGRAGRD P+ L++G D + +++I+ + Q
Sbjct: 309 PDVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQR 368
Query: 385 FSTRERSSKKSISDFSQVLD 404
+ R + + ++++ D
Sbjct: 369 IA---RQQLRRVINYAESTD 385
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 243/379 (64%), Gaps = 8/379 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 15 LEQALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVS 74
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L++ GI FL+ST + Q + GK ++LLYV PE
Sbjct: 75 PLIALMQDQVEALQDNGIGATFLNSTLSSQETRSRETAILEGK--IKLLYVAPERLLGER 132
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L + ++ ++ AIDEAHC+S WGHDFRP YR++ +R+ PD+PI+ LTATA
Sbjct: 133 FLPFLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMGLTATATE 192
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++D+++ L L+NP + +SFNRPNL+YEVR K ++A++ ++K G + I+YC
Sbjct: 193 RVRQDIIQQLTLRNPYIHVASFNRPNLYYEVRPKT--KHSFAEVLQIIKKKGGS-GIIYC 249
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R DE++ L GI YHAG+ND R++ +I QV+VAT+AFGMGI++
Sbjct: 250 LSRKKVDEVAYKLQQSGIQALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINKP 309
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PK++E +YQESGRAGRD P+ L++G D + +++I+ + Q
Sbjct: 310 DVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQRI 369
Query: 386 STRERSSKKSISDFSQVLD 404
+ R + + ++++ D
Sbjct: 370 A---RQQLRRVINYAESTD 385
>gi|322801995|gb|EFZ22532.1| hypothetical protein SINV_04660 [Solenopsis invicta]
Length = 1148
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 166/358 (46%), Positives = 223/358 (62%), Gaps = 8/358 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L ++ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 504 HSREML-QIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLSIGL 562
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+VVSPL +L+ +QV L I LS + T IY +L +P+L++LYVTPE
Sbjct: 563 TVVVSPLKSLISDQVQKLISLDIPAAHLSGSITENQAEAIYRELSKKEPALKILYVTPEK 622
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P S L ++ R LL IDE HC+S WGHDFRP Y++L LR+ P VP +AL
Sbjct: 623 ISASPKLCSTLTNLYERELLARFVIDEVHCVSQWGHDFRPDYKRLRCLRDNYPKVPTMAL 682
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + NP SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 683 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIIAKKGKNCSDEIVAMIMTKFK-- 740
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ +A + GI +YHAGL+D RS+ WIS +V+ AT+
Sbjct: 741 -NACGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLSDVQRSNCQGKWISDEIRVICATI 799
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ +L
Sbjct: 800 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGETADCILFYNYSDMHRIRKML 857
>gi|255535742|ref|YP_003096113.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
gi|255341938|gb|ACU08051.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
Length = 732
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 228/355 (64%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L KLL+ +FG + F+ Q + IQ +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LPKLLKKYFGFSTFKGHQQEIIQNLLEGQDIFVLMPTGGGKSLCYQLPALMSEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + ++G+A SS Q+K ++++D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSDQGVAHVLNSSLNKTQIK-QVFDDIRAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK++ ++ VAIDEAHCIS WGHDFRP YR L + + + DVP++ALTA
Sbjct: 125 IKEDYLEFLKEVK----ISFVAIDEAHCISEWGHDFRPEYRNLKLIIDKIADVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + A
Sbjct: 181 TATPKVQDDIQKTLGMSNALVFKESFNRPNLYYEVRPKVNID---REIVKFINARKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRRKVEEFAQLLQVNGINALPYHAGLDQKTRVMNQDKFLMEEADVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
ID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGYCLAFYDPKDIEKLEKFLAQ 352
>gi|428310069|ref|YP_007121046.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
gi|428251681|gb|AFZ17640.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
Length = 757
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/408 (41%), Positives = 257/408 (62%), Gaps = 10/408 (2%)
Query: 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
S Q +++ ++L + L+ FG+ FR Q ++ L+ RD +MPTGGGKS+C+Q
Sbjct: 41 SSAQNQSIMYQLQSLEEALKHFFGYDAFRPGQRQIVEEALAQRDLLVIMPTGGGKSLCFQ 100
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ-VKTKIYEDLDSGKPS 130
+PAL KPG+ +VVSPLIALM++QV L + GI FL+ST + V+++ L+ GK
Sbjct: 101 LPALLKPGLTVVVSPLIALMQDQVDALVDNGIGATFLNSTLSWDDVRSRELAILN-GK-- 157
Query: 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
++LLYV PE F+ L+K+ ++ ++ AIDEAHC+S WGHDFRP YR++ LR
Sbjct: 158 IKLLYVAPERLLGEKFLPFLEKVRAQIGISAFAIDEAHCVSEWGHDFRPEYRQMKQLRQR 217
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
PD+PILALTATA +VQ+D++E L L+ P + +SFNRPNL+YEV+ K+ +Y L
Sbjct: 218 YPDIPILALTATATKRVQQDILEQLTLRQPGIHIASFNRPNLYYEVQPKE--RHSYNQLL 275
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
+K++ + IVYCL R DE++ L GI YHAG++D+AR++ +I Q
Sbjct: 276 KKIKSHKGS-GIVYCLSRRAVDEVAFRLQKDGIDALPYHAGMSDEARATNQTRFIRDDVQ 334
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V+VAT+AFGMGI++ DVR V H+++P ++E +YQESGRAGRD P+ L++G + R +
Sbjct: 335 VMVATIAFGMGINKPDVRFVIHYDLPHNLERYYQESGRAGRDGEPAHCTLFFGAGNIRTI 394
Query: 371 EFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
++++ + Q + R + + D+++ D R G R+
Sbjct: 395 DYLIEQKPDPKEQRVA---RQQLRQVIDYAEGTDCRRTIQLRYFGERF 439
>gi|350417151|ref|XP_003491281.1| PREDICTED: Bloom syndrome protein homolog [Bombus impatiens]
Length = 1344
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 166/358 (46%), Positives = 224/358 (62%), Gaps = 8/358 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 624 HSRE-MLKVFRQKFGLYSFRPNQLQAINAAILGFDCFVLMPTGGGKSLCYQLPALLLPGV 682
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T + IY +L +PSL+LLYVTPE
Sbjct: 683 TIVISPLKSLILDQVQKLTSLDIPAAHMSGGITDSQASGIYRELSKKEPSLKLLYVTPEK 742
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ RGLL IDEAHC+S WGHDFRP Y+KL+ LR P VP++AL
Sbjct: 743 ISASQKFCNLLTTLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLNRLRENYPKVPVIAL 802
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L L P SSFNRPNL Y + + K+ D+ A L K
Sbjct: 803 TATATPRVRTDILHQLGLSVPKWFMSSFNRPNLRYSIIAKKGKNCSDEVIAMLKMKYK-- 860
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + + GI +YHAG D +R+ + WIS +VV AT+
Sbjct: 861 -NECGIVYCLSRKDCDDYAMQMRKNGIKALSYHAGHTDSSRTDIQGRWISEEIKVVCATI 919
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 920 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYADMHRIRKMI 977
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 249/400 (62%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRQIIEDALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E L GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRTNNISATFLNSSLNAFKVRSR-EEALLQGK--IKLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR++ SLR PDVP LALTATA
Sbjct: 124 RFLPLLDLVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRTKT--KTAYAELLGIIRENQGS-GIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTLKLQHDKISVLSYHAGLTDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD PS+ L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVIHYDLPRNLESYYQESGRAGRDDEPSRCTLFFSFSDIKTIEWSINQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
S + + + D+++ D G+RF GN
Sbjct: 361 IS---KQQLRQVIDYAEGTDCRRTIQLGYFGERFPGNCGN 397
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 236/359 (65%), Gaps = 9/359 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG+ FR Q I+ L +D +MPTGGGKS+CYQ+PAL KPG+ +VV
Sbjct: 13 SLESALKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVVV 72
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L++ GI FL+S+ + +++ + LD ++L+Y+ PE
Sbjct: 73 SPLIALMQDQVQALQDNGIPATFLNSSLSGTELRERERAILDG---EMKLVYIAPERLLN 129
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
G +L S+ + +AIDEAHC+S WGHDFRP YR+LS LR + +VPI+ALTATA
Sbjct: 130 EG---RLAGWLSQVYVAAIAIDEAHCVSEWGHDFRPEYRQLSQLRQWFANVPIMALTATA 186
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D++E L LQ+P++ S+FNRPNL+YEVR K +Y +L +++ I+
Sbjct: 187 TERVRYDIIEQLNLQDPVLHVSTFNRPNLYYEVRPKH--KQSYRELLQLIRQQAGASGII 244
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L GIS YHAG++++ RS +I QV+VAT+AFGMGI+
Sbjct: 245 YCLSRKRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMGIN 304
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
+ DVR V H+++P+++E +YQESGRAGRD P++ L++ M D + +EF++S+ N+
Sbjct: 305 KPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPARCTLFFSMGDVKTVEFLISQKVDPNT 363
>gi|302689945|ref|XP_003034652.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
gi|300108347|gb|EFI99749.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
Length = 702
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 183/470 (38%), Positives = 269/470 (57%), Gaps = 39/470 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALME 92
FG+ FR KQ +A++A + G+D F L PTG GKS+C+Q+PA+A G+ LVVSPL+ALM+
Sbjct: 72 FGYPSFRGKQKEAVEAAVQGQDVFVLAPTGMGKSLCFQVPAVAAAHGVTLVVSPLLALMK 131
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
NQV L KG+ L+S VK + DL S +P RLLYV+PE T F + L+
Sbjct: 132 NQVEALDAKGVHVASLTSETLKSVKNAVINDLRSARPKTRLLYVSPERFCTADFQAILEG 191
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H G+LN + +DEAHCIS WGHDFR YRKL R+ P+VPI+ALTATA P VQ D++
Sbjct: 192 LHDNGMLNRLVVDEAHCISQWGHDFRAEYRKLGMFRDNFPEVPIMALTATATPAVQSDIL 251
Query: 213 ESLCLQNPLVLKS--SFNRPNLFYEVRYK----DLLDDAYADLCSVL--KANGDTCAIVY 264
SL + + + K+ FNR NL+YEVRY + D Y DL S L + + IVY
Sbjct: 252 RSLNMTDDRLFKALHPFNRANLYYEVRYSCSATGQMKDIY-DLISRLHERRGRPSSGIVY 310
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-----QVVVATVAFG 319
C R TCDEL+ +L G++ YH G+ L +W + + VVVAT+AFG
Sbjct: 311 CRRRDTCDELAEFLRKRGMNARPYHRGIKGPTLDKTLAEWTAGGQVEGDLHVVVATIAFG 370
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN-Q 378
+GID+ DVR + H+++P S E +YQE+GRAGRD PS+ +LYY +D + ++ +
Sbjct: 371 LGIDKPDVRYIIHYDLPTSFEGYYQETGRAGRDGAPSRCILYYSREDAYNAKKLVQMSLA 430
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYY 438
++ S + S++S+ F +++ A K D + I Y+
Sbjct: 431 NRASHVGANGPAPSQRSVDSFDELVTFAHK----------ADTCRHVAI-------CRYF 473
Query: 439 SFHLLKQIPVSL---CKNSCDACKHPN---LLAKYLGELTSAVLQKNHFS 482
H+ + P + C CD CK+P+ LL + L + ++A+ + + ++
Sbjct: 474 GEHIDARDPAVVKQYCDKMCDVCKNPDKTRLLQQRLSDDSTALTRTSSWA 523
>gi|395533035|ref|XP_003768569.1| PREDICTED: ATP-dependent DNA helicase Q5 [Sarcophilus harrisii]
Length = 995
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 199/503 (39%), Positives = 288/503 (57%), Gaps = 44/503 (8%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+S
Sbjct: 19 RTLKKIFGFDSFKTNLQESATLAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVIS 78
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L + L+S + Q K KI DL++ KP +LLY+TPE+ A+
Sbjct: 79 PLIALIQDQVDHLLALKVCVCSLNSKLSAQEKKKILMDLENEKPQTKLLYITPEMAASAS 138
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR +P P +ALTATA
Sbjct: 139 FQPILNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRKRIPHAPCVALTATATQ 198
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT---- 259
+VQ+DV+ +L L+ P+ + K+ R NLFY+V++KDLL D Y +L LKA G
Sbjct: 199 QVQEDVVTALKLRQPIAIFKTPCFRANLFYDVQFKDLLGDPYGNLKDFCLKALGQKNDKG 258
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R C++++ LS+ GI AYHAGL + R V ++W+ + V+VAT
Sbjct: 259 AFPGCGIVYCRMREACEQVAKELSSRGIKAKAYHAGLKTEDRMLVQNEWMEEKVPVIVAT 318
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 319 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGQPSWCRLYYSRNDRDQVCFLIK 378
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
K SK + ++ K S++ F ++D F +G R+ + +
Sbjct: 379 KEISKLQEKRGNKD-CDKASMAAFESLVD-----FCEKVGCRH-------------AAIA 419
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQIFISSQDMT 492
Y+ P S C CD CK P + K L L S+ K S+ S ++
Sbjct: 420 KYFG-----DAPPS-CSKGCDHCKSPGAVRKQLDALERSSSWSKTQIRSSRGNDSDSELY 473
Query: 493 DGGQ--YSEF--WNRDDEASGSE 511
+GG+ Y F ++ D E++G+E
Sbjct: 474 EGGRRGYDGFGRYDEDSESNGAE 496
>gi|434399695|ref|YP_007133699.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
gi|428270792|gb|AFZ36733.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
Length = 708
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 243/393 (61%), Gaps = 8/393 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+ FR Q + I+ L+ +D +MPTGGGKS+C+Q+PAL KPG+ LVVS
Sbjct: 4 LEKALKHYFGYDSFRPGQKEIIEETLNNQDLLIIMPTGGGKSLCFQLPALLKPGLTLVVS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK++GI FL+ST + Y + GK ++LLYV PE
Sbjct: 64 PLIALMQDQVDALKDRGIDATFLNSTLDYEEMRSRYGAILQGK--IKLLYVAPERLLAEK 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F + L KI + ++ +AIDEAHCIS WGHDFRP YR+L R P VP+LALTATA
Sbjct: 122 FRTFLDKIANNIGISTIAIDEAHCISEWGHDFRPEYRQLKQFRQRYPQVPLLALTATATK 181
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ+D++E L LQNP V +SFNR N+ Y+V+ K +Y L +++ IVYC
Sbjct: 182 RVQQDIIEQLGLQNPSVHLNSFNRFNIHYQVQPKQ--QRSYHQLLQEIRSQSG-AGIVYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GI YHAG+ D+ R+ ++ QV+VAT+AFGMGI++
Sbjct: 239 LSRRNVEEVAYKLQKDGIKALPYHAGMTDEKRTINQTRFLRDDVQVMVATIAFGMGINKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++P+S+E FYQESGRAGRD + S+L++ M D +++++++ + Q
Sbjct: 299 DVRFVFHYDLPRSLENFYQESGRAGRDGESATSILFFSMGDWKKIDYLIEQKPDPQEQRI 358
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ R + D+++ +D R G R+
Sbjct: 359 A---RQQLNQVIDYAEGVDCRRTILLRYFGERF 388
>gi|380011350|ref|XP_003689771.1| PREDICTED: Bloom syndrome protein homolog [Apis florea]
Length = 1167
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 165/363 (45%), Positives = 224/363 (61%), Gaps = 8/363 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 469 HSREML-KIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGV 527
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T IY +L P+L+LLYVTPE
Sbjct: 528 TIVISPLKSLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEK 587
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P F + L +++R LL IDEAHC+S WGHDFRP Y+KL+ LR P VP++ L
Sbjct: 588 ISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKKLNCLRENYPKVPVIVL 647
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 648 TATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKSKNCSDEVIAMIKTKYK-- 705
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + ++ I +YHAGL D RS + WIS +VV AT+
Sbjct: 706 -NDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIKVVCATI 764
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 765 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTDMHRIRKMIEL 824
Query: 377 NQS 379
+ S
Sbjct: 825 DNS 827
>gi|330795187|ref|XP_003285656.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
gi|325084382|gb|EGC37811.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
Length = 529
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 167/359 (46%), Positives = 225/359 (62%), Gaps = 5/359 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG QFR+ Q + I +VL +D F LMPTGGGKS+CYQIP L + G+ +VVSPLI+L+E+
Sbjct: 5 FGFNQFRENQREIINSVLDSKDTFVLMPTGGGKSLCYQIPGLYQQGVTIVVSPLISLIED 64
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKK 152
QV L L S T K++ DL S P RLLYVTPE A+ FM L
Sbjct: 65 QVKFLLALDYPAAALCSGITSDDAKKVFRDLRSNSPKTRLLYVTPERVASNETFMDILGD 124
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ +G + IDEAHC+S WGHDFRP Y++LS LR P VPILALTATA KV+ D++
Sbjct: 125 LYQKGKFMRIVIDEAHCVSQWGHDFRPDYKELSILRKNFPSVPILALTATATEKVRNDII 184
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
+L ++ P+ K SFNRPNL+Y V K D + +K D I+YCL + C
Sbjct: 185 LNLNMKKPVCFKQSFNRPNLYYHVMKKP--KDVSKQMAEFIKKQYPDKSGIIYCLSKYDC 242
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+++S L+ GI A YHAG+ +R+ V D W R +V+VAT+AFGMGI++ DVR V
Sbjct: 243 EKISGDLNTEYGIKSAYYHAGMEIHSRNQVQDRWQKGRIKVIVATIAFGMGINKPDVRFV 302
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
H +IPKS+E +YQESGRAGRD L S +LYY D+ R+E ++ + +N ++ +E
Sbjct: 303 FHHSIPKSLEGYYQESGRAGRDGLKSHCILYYKWADKLRIETLIMLSSKENGTHYNLKE 361
>gi|426248114|ref|XP_004017810.1| PREDICTED: Bloom syndrome protein [Ovis aries]
Length = 1429
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 227/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ RGLL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYERGLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYAYHDVTRLKRLILMEK 1021
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1022 DGNRHTRET 1030
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 253/400 (63%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNAYQVRSR-EEAILNGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L ++ + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 124 RFLPFLDLVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + AI+Y
Sbjct: 184 DRVRSDIIQQLGLKQPSIHLASFNRQNLYYEVRPKS--KQAYAELLELIRDN-EGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFGDIKTIEWSIEQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
+ + + + D+++ D G+RF+ GN
Sbjct: 361 IA---KQQLRQMIDYAEGTDCRRTIQLGYFGERFAGNCGN 397
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 247/398 (62%), Gaps = 17/398 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LYKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA L+S+ T ++ ED+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSTEHGIA-HVLNSSLTKSEINQVKEDIKSG--VTKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++S LK++ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+P++ LTA
Sbjct: 125 TKEEYVSFLKEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPMIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V K+SFNRPNLFYE+R K + +D+ +K N
Sbjct: 181 TATPKVQEDILKNLEIPDANVFKASFNRPNLFYEIRPK--TKNIESDIIRFIKQNAGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPIAE 358
Query: 381 NSQSFSTRERS---SKKSISDFSQVLDVAGKRFSRVLG 415
F+ + ++ S+S +L G+ F V G
Sbjct: 359 QEIGFALLQEVVGYAETSMSRRKFLLHYFGEEFDEVNG 396
>gi|371777407|ref|ZP_09483729.1| ATP-dependent DNA helicase [Anaerophaga sp. HS1]
Length = 726
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 227/350 (64%), Gaps = 14/350 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ HFG F+ Q + I+ VL+G D F LMPTGGGKS+CYQ+PAL G +V+S
Sbjct: 7 LKRYLKKHFGFDTFKGNQEEIIKNVLAGNDTFVLMPTGGGKSLCYQLPALILEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ + GIA FL+S+ T K+ ED+ +G+ RLLYV PE
Sbjct: 67 PLIALMKNQVDAMRSFSEDDGIA-HFLNSSLTKSAIQKVKEDVIAGRT--RLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + N + + P++ALTA
Sbjct: 124 TKEENIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGEAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + N V KSSFNRPNL+YEVR K +A ++ +LK N A
Sbjct: 180 TATPKVQHDIQKNLGMLNARVFKSSFNRPNLYYEVRPKV---NATREIIKILKDNPGKSA 236
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L GI AYHAG++ RS D ++ V+VAT+AFGMG
Sbjct: 237 IIYCLSRKKVEELAETLVVNGIKALAYHAGMDAATRSKNQDKFLMEEIDVIVATIAFGMG 296
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR+V H++IPKS+E +YQE+GRAGRD K + +Y D +++E
Sbjct: 297 IDKPDVRMVIHYDIPKSLEGYYQETGRAGRDGGEGKCIAFYSYKDIQKLE 346
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 253/401 (63%), Gaps = 20/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRQIIEDALQNRDLLVVMPTGGGKSLCFQLPALMKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYED-LDSGKPSLRLLYVTPELTAT 143
PLIALM++QV L+ I+ FL SS QV+++ ED + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNPYQVRSR--EDAILNGK--VRLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L +H + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 123 ERFLPFLDLVHEKIGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPMLALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ + + I+
Sbjct: 183 TDRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRAKS--KQAYAELLELIR-DTEGSVII 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L I+ YHAGL D RS +I +V+VAT+AFGMGI+
Sbjct: 240 YCLTRKKVEELTFKLQNDKIAVLPYHAGLPDAERSQNQTRFIRDDVRVMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 300 KPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFADIKTIEWSIEQKTEPQEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
+ R + + D+++ D G+RF+ GN
Sbjct: 360 LIA---RQQLRQMIDYAEGTDCRRTIQLGYFGERFAGNCGN 397
>gi|344201636|ref|YP_004786779.1| RecQ familyATP-dependent DNA helicase [Muricauda ruestringensis DSM
13258]
gi|343953558|gb|AEM69357.1| ATP-dependent DNA helicase, RecQ family [Muricauda ruestringensis
DSM 13258]
Length = 733
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 223/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ Q D IQ +LSG D F +MPTGGGKS+CYQ+PA+ + G +VVSPLIA
Sbjct: 12 LKKYFGFSKFKGLQEDVIQNILSGNDTFVIMPTGGGKSLCYQLPAIMEEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ + GIA SS +V+ ++ ED+ G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISEQHGIAHVLNSSLTKTEVR-QVKEDITKG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ LK + L+ VA+DEAHCIS WGHDFRP YR L + N L D +PI+ LTATA
Sbjct: 129 NVDFLKNVK----LSFVAVDEAHCISEWGHDFRPEYRNLRGIINRLGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNRPNLFYEVR K D AD+ +K N I+Y
Sbjct: 185 PKVQEDIIKNLGMTDAKVFKASFNRPNLFYEVRPK--TKDVDADIIRFVKQNQGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDVEKLEKFMS 353
>gi|56461647|ref|YP_156928.1| superfamily II DNA helicase [Idiomarina loihiensis L2TR]
gi|56180657|gb|AAV83379.1| Superfamily II DNA helicase, RecQ [Idiomarina loihiensis L2TR]
Length = 614
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 244/392 (62%), Gaps = 21/392 (5%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
ST++ + PL ++ L FG+ QFRD Q D +QA + GRD LMPTGGGKS+C
Sbjct: 4 STAEKAQFDPLKQQ------LESTFGYHQFRDGQEDIMQAAMQGRDSLVLMPTGGGKSLC 57
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQ+PA+ G+ LV+SPL++LM++QV LK I+ L S + Q + L SG
Sbjct: 58 YQLPAICGDGLTLVISPLLSLMQDQVEALKALDISAATLHSGVSSQESMATMQGLQSG-- 115
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
++LLYV+PE P F+ +L+ + LN +A+DEAHCIS WGHDFRP Y KL LRN
Sbjct: 116 DIKLLYVSPERVLQPTFIERLQTLK----LNFIAVDEAHCISQWGHDFRPEYGKLGVLRN 171
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 249
YLP+VP +ALTATA Q D++E LCL+ PLV +SSF+RPN+ Y V+ K Y L
Sbjct: 172 YLPNVPFMALTATADSATQHDIIERLCLREPLVHRSSFDRPNIRYVVQEK------YKPL 225
Query: 250 CSV---LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
V +K I+YC R +ELS L G+ A YHAG+ + + S L ++
Sbjct: 226 KQVRDYVKKQKGAAGIIYCGSRKKTEELSESLQQAGVRAAPYHAGIEHQIKESTLRQFLR 285
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VVVATVAFGMGI++ ++R V HF+IP+S+E++YQE+GRAGRD LP+++++ Y D
Sbjct: 286 DDIDVVVATVAFGMGINKPNIRFVIHFDIPRSVESYYQETGRAGRDGLPAEAVMLYDPRD 345
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISD 398
+ + ++ +++ + ++ S+ +++++
Sbjct: 346 AQWIRRMIEDQENEQRRLVEAQKFSAMQAMAE 377
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/357 (44%), Positives = 227/357 (63%), Gaps = 4/357 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG+ F Q + I+ LSGRD F LMPTG GKS+ YQ+ L G+ +++S
Sbjct: 4 LEQHLKHYFGYEAFLPGQREVIEQALSGRDAFALMPTGAGKSLIYQLSGLLLNGVSIIIS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK GI FL+S + +++ ++ GK L+L+YV PE T
Sbjct: 64 PLIALMQDQVDRLKTNGIPATFLNSALSASERSQREREILQGK--LKLVYVAPERLLTQT 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F++ L ++ R L L+A+DEAHC+S WGHDFRP YR+L LR P VP +ALTATA
Sbjct: 122 FLTFLDEVQERVGLGLIAVDEAHCVSEWGHDFRPEYRQLGRLRVRYPQVPAMALTATATE 181
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ+D++ L L +P V +S+NRPNL+YEVR K + Y++L L+ D I+YC
Sbjct: 182 RVQEDILTQLKLNDPYVEVASYNRPNLYYEVRQKH--QNTYSELVQFLREQSDAPVIIYC 239
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D ++ L GI YHAGL+ R+ D +I V+VAT+AFGMGI +
Sbjct: 240 QSRKNVDTIADSLQHHGIRALPYHAGLSTDERTRNQDSFIHDDVPVLVATIAFGMGIAKP 299
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
DVR V H+++PKS+E +YQESGRAGRD L ++ +L+Y DR + EFIL++ + ++
Sbjct: 300 DVRAVIHYDMPKSLEGYYQESGRAGRDGLEARCILFYQHGDRMKYEFILAQKEDEHE 356
>gi|336476813|ref|YP_004615954.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
gi|335930194|gb|AEH60735.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Length = 611
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 233/355 (65%), Gaps = 9/355 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG+ FR Q + I +L G+D F LMPTGGGKS+CYQ+PAL G+ +V+SPLI
Sbjct: 4 ILQKYFGYNDFRPLQKEIISDILEGKDTFALMPTGGGKSLCYQLPALMMDGVTVVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK GIA E+L+ST +++E L + +++LYV PE S
Sbjct: 64 SLMKDQVDNLKSNGIAAEYLNSTLGYSQIKQVHEKLIDNR--IKILYVAPERLIMSDTFS 121
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LKK G +++ A+DEAHCIS WGHDFRP YR+L+ L+ +VPI+ALTATA+PKV+
Sbjct: 122 YLKK----GKVSMFAVDEAHCISEWGHDFRPEYRRLNILKKRFRNVPIVALTATASPKVE 177
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
KD+++ L L++ ++SFNR NLFY V+ K D Y L + LK + I+YC R
Sbjct: 178 KDIVKQLSLEDCRTYRASFNRKNLFYHVKTKK---DTYRQLKAYLKKHRGESGIIYCQSR 234
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ + LS L+ G AYHAGL+D R + +I ++VATVAFGMGID+ DVR
Sbjct: 235 SMVETLSKRLNKDGFKTLAYHAGLSDFKREYNQNSFIQDNTDIIVATVAFGMGIDKPDVR 294
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
V H+++PK++E++YQE+GR GRD LP + +L++ D+ ++E+ + + ++K +
Sbjct: 295 FVIHYDLPKNLESYYQETGRGGRDGLPCECVLFFSYADKYKIEYFIEQKKTKEER 349
>gi|336317637|ref|ZP_08572488.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
gi|335877984|gb|EGM75932.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
Length = 599
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 235/358 (65%), Gaps = 9/358 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ FG++QFR QL+ IQA LSG+D F LMPTGGGKS+CYQ+PAL P + +V
Sbjct: 3 QLLFDTLKQAFGYSQFRHGQLEVIQACLSGQDTFVLMPTGGGKSLCYQLPALMLPYVTVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA EF++S+Q+ + + L + + L+LLY+ PE
Sbjct: 63 VSPLMSLMKDQVDALQANGIAAEFINSSQSREEIQDVIRRLRNQQ--LKLLYLAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
FMS+L ++ ++L AIDEAHCIS WGHDFRP Y +L+ L++Y P VP++ALTATA
Sbjct: 121 ADFMSRLAEVG----VSLFAIDEAHCISQWGHDFRPHYTELAQLKHYFPHVPMMALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P QKD+ L LQ P + SF+RPN+ Y V+ K + + LK I+
Sbjct: 177 DPATQKDISRQLNLQQPYISVGSFDRPNIRYTVQEKF---RPLEQVVNYLKLQEQQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+ L+ G AAYHAGL ++ R+SV + + + Q+++ATVAFGMG++
Sbjct: 234 YCASRRKVDELTEQLAGKGFQVAAYHAGLTNEQRNSVQEAFKKDQIQLIIATVAFGMGVN 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+ ++R V HF +P+++EA+YQE+GRAGRD +P+++L+ D RM + K+++ +
Sbjct: 294 KSNIRFVIHFELPRTIEAYYQETGRAGRDGVPAEALMLVDPADIARMRSWIEKDENNS 351
>gi|391333104|ref|XP_003740962.1| PREDICTED: Bloom syndrome protein-like [Metaseiulus occidentalis]
Length = 1216
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+K +HEK FG +FR Q AI A L DCF LMPTGGGKS+CYQ+PA+
Sbjct: 555 SKDMHEK------FHNFFGLTEFRHNQKQAINAALLNNDCFVLMPTGGGKSLCYQLPAIC 608
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ +VVSPL +L+ +QV LK GI + S + + ++YEDL +P L+LLYV
Sbjct: 609 SKGVTVVVSPLKSLIYDQVTKLKSMGIPATAMMSEVSDR---EVYEDLRRAEPLLKLLYV 665
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE L A+ + +K+H R L IDEAHC+S WGHDFR Y KL LR P VP
Sbjct: 666 TPEKLAASNLLKNTFEKLHRRNQLARFVIDEAHCVSQWGHDFRVDYHKLGQLRQTFPGVP 725
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
I+ALTATA+P V+KD+++ L ++ P SFNRPNL Y++ K + ++
Sbjct: 726 IMALTATASPSVRKDILKQLLMKEPKWFLQSFNRPNLRYQI-VKYFSGSPVTHIIKLISN 784
Query: 256 N-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ IVYCL R CD+ +A L + GIS +YHAG+ND RSS+ D WI+ RK VV A
Sbjct: 785 KYFEKSGIVYCLSRKDCDQTAAKLESAGISAVSYHAGMNDAERSSIQDMWINGRKHVVCA 844
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ +VR V H +PKS+E +YQE+GRAGRD LPS +L+Y D R + ++
Sbjct: 845 TIAFGMGIDKANVRFVFHTGLPKSVEGYYQETGRAGRDGLPSDCVLFYRFADYIRWQKLI 904
Query: 375 S 375
+
Sbjct: 905 T 905
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/375 (42%), Positives = 240/375 (64%), Gaps = 8/375 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q I+AV RD +MPTGGGKS+CYQ+PAL KPG+ +VVSPLIA
Sbjct: 8 LKQYFGYETFRPGQKAIIEAVYQQRDVLAVMPTGGGKSLCYQLPALLKPGLAVVVSPLIA 67
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GIA FL+S+ T + + +G+ ++LLY+ PE +P +
Sbjct: 68 LMQDQVETLQKNGIAATFLNSSLTAEEARSRRLSILNGE--MKLLYLAPEKLVSPASKTF 125
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + L+L AIDEAHCIS WGHDFRP YR+L +LR+ P +P++ALTATA +V+
Sbjct: 126 LQAVQEKHGLSLFAIDEAHCISEWGHDFRPEYRQLKTLRSLFPKIPMIALTATATERVRS 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++ L L P V +SF+RPNL+YEV+ K Y L ++ + IVYCL R
Sbjct: 186 DIIHQLTLDQPKVQITSFDRPNLYYEVQPKQ--RQHYNQLFKFIRHQTGS-GIVYCLSRR 242
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GIS YHAG++D RS ++ QV+VAT+AFGMGID+ D+R
Sbjct: 243 RVEEVAFRLKKDGISALPYHAGMSDGNRSDYQTRFLRDDVQVMVATIAFGMGIDKPDIRF 302
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++P+++E +YQE+GRAGRD P++ LL +G D +E+ +S+ + + SQ +
Sbjct: 303 VVHYDLPRNLENYYQEAGRAGRDSEPAQCLLLFGAKDIHTIEYFISQKEDEKSQRLA--- 359
Query: 390 RSSKKSISDFSQVLD 404
R + + D+++ D
Sbjct: 360 RQQLRKVIDYAEGTD 374
>gi|291237646|ref|XP_002738744.1| PREDICTED: Bloom syndrome protein-like [Saccoglossus kowalevskii]
Length = 1050
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 229/358 (63%), Gaps = 4/358 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG +FR QL+AI A L +DCF LMPTGGGKS+CYQ+P G+
Sbjct: 450 HSKE-MLKVFRQIFGLHKFRTNQLEAINAALLSKDCFILMPTGGGKSLCYQLPGSISKGL 508
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
LVVSPL +L+++QV L + + LS + IY +L P L+LLYVTPE
Sbjct: 509 TLVVSPLKSLIQDQVQKLCLRDVPSAHLSGDASPNEVELIYRELSRRDPQLKLLYVTPEK 568
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++++ +S L+ ++SRG+L+ IDEAHC+S WGHDFRP Y++L+ LR P VPI+AL
Sbjct: 569 ISSSSKLVSTLENLYSRGMLSRFVIDEAHCVSQWGHDFRPDYKRLNKLRELFPTVPIMAL 628
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA P+V+ D+++ L +++P+ SFNR NL Y + Y D ++++A
Sbjct: 629 TATATPRVRADIVKQLKIRSPIWFIQSFNRSNLKYSI-YPKKPSKVTQDCINLIQARFAG 687
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R C++++A LS+ GIS AYHAGL +R+ W+ +VV AT+AF
Sbjct: 688 ESGIIYCLSRNECEKVAAELSSAGISAKAYHAGLESNSRTYTQQAWVRDEYKVVCATIAF 747
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
GMGID+ DVR V H ++PKS+E FYQESGRAGRD + +L+Y D R+ ++ +
Sbjct: 748 GMGIDKPDVRFVIHHSLPKSIEGFYQESGRAGRDGNIAHCILFYSYQDMTRLRKVMER 805
>gi|25145561|ref|NP_502390.2| Protein HIM-6 [Caenorhabditis elegans]
gi|28201770|sp|O18017.2|BLM_CAEEL RecName: Full=Bloom syndrome protein homolog; AltName: Full=High
incidence of males protein 6; AltName: Full=RecQ
helicase homolog
gi|20853750|gb|AAM26298.1| RecQ helicase [Caenorhabditis elegans]
gi|22859109|emb|CAB05609.2| Protein HIM-6 [Caenorhabditis elegans]
Length = 988
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE ++A+
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASG 354
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
S +H RGLL IDEAHC+S WGHDFRP Y KLSSLR P VPI+ALTAT
Sbjct: 355 RLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTAT 414
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---- 258
A PK+ D + L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 415 ATPKIVTDARDHLKMQNSKLFISSFVRDNLKY-----DLIPKAARSLINVVEKMKQLYPG 469
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R C+ + L+ G+S YHAGLND R SV WI+++ V+ AT+AF
Sbjct: 470 KSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGN 589
Query: 379 S 379
+
Sbjct: 590 T 590
>gi|328778036|ref|XP_396209.4| PREDICTED: Bloom syndrome protein homolog, partial [Apis mellifera]
Length = 1179
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 163/363 (44%), Positives = 223/363 (61%), Gaps = 8/363 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 598 HSREML-KIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGV 656
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T IY +L P+L+LLYVTPE
Sbjct: 657 TIVISPLKSLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEK 716
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P F + L +++R LL IDEAHC+S WGHDFRP Y++L+ LR P VP++ L
Sbjct: 717 ISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKRLNCLRENYPKVPVIVL 776
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ + + K
Sbjct: 777 TATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKGKNCSDEVIGMIKTKYK-- 834
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + ++ I +YHAGL D RS + WIS +VV AT+
Sbjct: 835 -NDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIKVVCATI 893
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 894 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTDMHRIRKMIEL 953
Query: 377 NQS 379
+ S
Sbjct: 954 DNS 956
>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
Length = 731
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 249/399 (62%), Gaps = 8/399 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ ++L L+ FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 23 MYQLQSLGDALKQFFGYTTFRPGQQQIVEEALQNRDLLIIMPTGGGKSLCFQLPALLKPG 82
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLIALM++QV L + GI FL+ST + + +GK ++LLYV PE
Sbjct: 83 LTVVVSPLIALMQDQVDALVDNGIGATFLNSTLSWDAVRSREMAILNGK--IKLLYVAPE 140
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F L+++ S+ ++ A+DEAHC+S+WGHDFRP YR++ LR PD+PILAL
Sbjct: 141 RLLAERFAPFLEQVRSQVGISAFAVDEAHCVSAWGHDFRPEYRQIKQLRQRYPDIPILAL 200
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +VQ+D+++ L L+ P + +SFNRPNL+YE++ K +Y L ++++ +
Sbjct: 201 TATATKRVQQDIVQQLTLRQPSIHIASFNRPNLYYEIQPKQ--RQSYNQLFKKVQSHKGS 258
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + DE++ L GIS YHAG++D RSS + +I QV+VAT+AFG
Sbjct: 259 -GIIYCLSRRSVDEVAFRLQKDGISALPYHAGMSDIDRSSNQNRFIRDDVQVIVATIAFG 317
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+ ++Y D R+++++ +
Sbjct: 318 MGINKLDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAYCTIFYRPGDVPRLDYLIDQKPD 377
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
Q + R + I D+++ D R G R+
Sbjct: 378 PREQRVA---RQQLQQIRDYAEGTDCRRTILLRYFGERF 413
>gi|119913638|ref|XP_613809.3| PREDICTED: Bloom syndrome protein [Bos taurus]
Length = 1430
Score = 324 bits (830), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 226/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1023 DGNRHTRET 1031
>gi|297487976|ref|XP_002696629.1| PREDICTED: Bloom syndrome protein [Bos taurus]
gi|296475516|tpg|DAA17631.1| TPA: Bloom syndrome, RecQ helicase-like [Bos taurus]
Length = 1430
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 226/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1023 DGNRHTRET 1031
>gi|375149593|ref|YP_005012034.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
gi|361063639|gb|AEW02631.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
Length = 763
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ FG F+ Q I+ +L+G+D F + PTGGGKS+CYQ+PA+ G+ +++
Sbjct: 37 SLHQALQEQFGFDHFKGNQEAIIKTLLAGKDTFVIKPTGGGKSLCYQLPAIMSEGVAIII 96
Query: 85 SPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ K FL+ST T + ++++DL SG+ ++LYV PE L
Sbjct: 97 SPLIALMKNQVDLVRSYSSKDDVAHFLNSTLTKKEIREVHDDLLSGRT--KMLYVAPETL 154
Query: 141 TATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPIL 197
T F S LK L+ A+DEAHCIS WGHDFRP YR+L + + PD+P++
Sbjct: 155 TKQENLEFFSDLK-------LSFFAVDEAHCISEWGHDFRPEYRRLREMMTQINPDIPVI 207
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQ D++++L L++P + SSFNRPNL+YE++ K D ++ + +
Sbjct: 208 ALTATATPKVQSDIIKNLALKDPEIYISSFNRPNLYYEIQPKIKKDQTIKNIVRFIVSMK 267
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+Y L R T +EL+ L A GI AYHAGL+ K R+ D +++ QV+VAT+A
Sbjct: 268 GKSGIIYTLNRKTTEELADMLMANGIKAVAYHAGLDSKLRAERQDLFLNEDVQVIVATIA 327
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
FGMGID+ D+R V HFNIPKS+E +YQE+GRAGRD L K +LYY D ++E ++
Sbjct: 328 FGMGIDKPDIRFVIHFNIPKSIENYYQETGRAGRDGLEGKCILYYSHKDVSKLEHLM 384
>gi|440913178|gb|ELR62661.1| Bloom syndrome protein [Bos grunniens mutus]
Length = 1430
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 226/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1023 DGNRHTRET 1031
>gi|383859981|ref|XP_003705470.1| PREDICTED: Bloom syndrome protein homolog [Megachile rotundata]
Length = 1362
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/363 (45%), Positives = 223/363 (61%), Gaps = 8/363 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 625 HSRE-MLKIFRQKFGLYSFRPNQLQAINAAMLGFDCFVLMPTGGGKSLCYQLPALLLPGV 683
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LS T T IY +L P+L+LLYVTPE
Sbjct: 684 TIVISPLKSLILDQVQKLTSLDIPAAHLSGTITDAQADAIYRELSKKDPALKLLYVTPEK 743
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ RGLL IDEAHC+S WGHDFRP Y++L LR V ++AL
Sbjct: 744 ISASQKFCNLLSSLYERGLLAKFVIDEAHCVSQWGHDFRPDYKRLKMLRENYTKVGMIAL 803
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L L P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 804 TATATPRVRTDILHQLGLTRPKWFMSSFNRPNLRYSIITKKGKNCSDEVIAMIKTKYK-- 861
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + + GI YHAGL D RS++ WIS +VV AT+
Sbjct: 862 -NDCGIVYCLSRKECDDYAVQMRKNGIKALGYHAGLTDNNRSNIQGRWISEEIKVVCATI 920
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 921 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYADMHRIRKMIEM 980
Query: 377 NQS 379
+ S
Sbjct: 981 DNS 983
>gi|395502424|ref|XP_003755581.1| PREDICTED: Bloom syndrome protein [Sarcophilus harrisii]
Length = 1445
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/369 (45%), Positives = 227/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI AVL G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 685 HSKE-MMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGV 743
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 744 TIVISPLRSLIIDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 803
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++L+ LR+ P V ++AL
Sbjct: 804 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRHKFPSVSMMAL 863
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + NP V SFNR NL Y V K A+ L + K +
Sbjct: 864 TATANPRVQKDILTQLKILNPQVFSMSFNRHNLKYSVLPKKPKKVAFDCLEWIRKHHPHD 923
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 924 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 983
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 984 GMGIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEK 1043
Query: 379 SKNSQSFST 387
NS + T
Sbjct: 1044 DGNSHTRQT 1052
>gi|308452165|ref|XP_003088938.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
gi|308244257|gb|EFO88209.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
Length = 1020
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/363 (45%), Positives = 227/363 (62%), Gaps = 12/363 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 267 EELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTVV 326
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
VSPL +L+E+Q + +KE GI E L++ + + IY DL S P+++LLYVTPE ++A
Sbjct: 327 VSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKISA 386
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALT 200
+ +S +H RGLL IDEAHC+S WGHDFRP Y KLS+LR + P VPI+ALT
Sbjct: 387 SGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIALT 446
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D +L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 447 ATATPKIVTDARYNLKMQNSKLFISSFVRDNLKY-----DLIPKAAKSLINVVEKMKQLY 501
Query: 259 --TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C+ + L+ G+S YHAGLND R SV W++++ V+ AT+
Sbjct: 502 PGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDGLRVSVQKGWLANKFDVICATI 561
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 562 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 621
Query: 377 NQS 379
+
Sbjct: 622 GNT 624
>gi|359474777|ref|XP_002267000.2| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis
vinifera]
Length = 711
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 222/334 (66%), Gaps = 6/334 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G+ LVVSPL++L+++
Sbjct: 85 FGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G L++LYVTPE ++ + F+SKL+K
Sbjct: 145 QVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ L L+ PDVP++ALTATA KVQ D+M
Sbjct: 205 CHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ IVYC R
Sbjct: 265 EMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ LLY+
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYF 417
>gi|428781470|ref|YP_007173256.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
gi|428695749|gb|AFZ51899.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Length = 713
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/375 (42%), Positives = 240/375 (64%), Gaps = 8/375 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q D IQAV + +D +MPTGGGKS+CYQ+PAL KPG+ +VVSPLIA
Sbjct: 10 LKQYFGYDQFRPGQKDVIQAVCNQQDVLVVMPTGGGKSLCYQLPALLKPGLAVVVSPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GIA FL+S+ + L + +++LLY+ PE + G
Sbjct: 70 LMQDQVESLQKNGIAATFLNSS--LNPNEARSRRLSILQGNIKLLYLAPEKLVSSGAKKF 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + L+L A+DEAHCIS WGHDFRP YR+L +LR P+VP +ALTATA +V+
Sbjct: 128 LQAVSEKQGLSLFAVDEAHCISEWGHDFRPEYRQLETLRQQFPEVPTIALTATATEQVRG 187
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++ L L+ P + +SF+RPNL+YEV+ K Y L ++ + + IVYCL R
Sbjct: 188 DIIRQLKLKPPKIQITSFDRPNLYYEVQPKQ--RQHYNQLFKFIR-HQNGSGIVYCLSRR 244
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GIS YHAG+ D R ++ QV+VAT+AFGMGID+ D+R
Sbjct: 245 RVEEVAFRLEKDGISALPYHAGMTDGNRRDYQTRFLRDDVQVMVATIAFGMGIDKPDIRF 304
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++P+++E +YQE+GRAGRD P++ LL +G D +E+++S+ + + SQ +
Sbjct: 305 VAHYDLPRNLENYYQEAGRAGRDNEPAQCLLLFGAKDIHTIEYLISQKEEEKSQRLA--- 361
Query: 390 RSSKKSISDFSQVLD 404
R + + D+++ D
Sbjct: 362 RQQLRKMIDYAEGTD 376
>gi|449453437|ref|XP_004144464.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 738
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 225/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + AV+SGRD +M GGGKS+CYQ+PAL GI LVVSPL++L+++
Sbjct: 86 FGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIALVVSPLLSLIQD 145
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+S + + + IY++L+ G+ S+++LYVTPE ++ + FMSKL+K
Sbjct: 146 QVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKVSKSKRFMSKLEK 205
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y+ L L+ P+ P++ALTATA +VQ D++
Sbjct: 206 CYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNAPVIALTATATQRVQNDLV 265
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ I+YC R
Sbjct: 266 EMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFIQESYPNNES-GIIYCFSR 324
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +SR QV+V TVAFGMGI++ DVR
Sbjct: 325 KECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMGINKPDVR 384
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ LLYY D R
Sbjct: 385 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPR 425
>gi|441498157|ref|ZP_20980358.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441438064|gb|ELR71407.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 728
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 223/352 (63%), Gaps = 9/352 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK+ L L+ FG+ QFR Q I +L+GR+ F +MPTG GKS+CYQ+PAL G
Sbjct: 3 IEEKDLLKSKLKEVFGYNQFRGNQEAIINNILNGRNTFVIMPTGAGKSLCYQLPALVTDG 62
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPLIALM+NQV L G+ +FL+ST T ++ ++ G S++LLYV PE
Sbjct: 63 LAIVISPLIALMKNQVDQLNAFGVNAQFLNSTLTKAEMNRVKKETLDG--SIKLLYVAPE 120
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ LKK + ++ VA+DEAHCIS WGHDFRP YR++ + L ++PI+AL
Sbjct: 121 SLTKEENIDFLKKAN----VSFVAVDEAHCISEWGHDFRPEYRRIKEIIGLLGNLPIIAL 176
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ D+ ++L ++ V KSSFNR NLFYEVR K A L L+ +
Sbjct: 177 TATATPKVQLDIQKNLHMEGADVFKSSFNRTNLFYEVRQKK---HAKKQLIQFLRDHKGK 233
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R E++ L+ G A YHAGL R DD+++ +VVAT+AFG
Sbjct: 234 SGIVYCLSRKKVVEIAELLNVNGFKAAPYHAGLEPAVREKNQDDFLNEDVDIVVATIAFG 293
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
MGID+ DVR V H+++PKS+E +YQE+GR+GRD L K L++Y +D ++E
Sbjct: 294 MGIDKPDVRFVVHYDVPKSLEGYYQETGRSGRDGLEGKCLMFYSHNDINKLE 345
>gi|341891934|gb|EGT47869.1| hypothetical protein CAEBREN_30811 [Caenorhabditis brenneri]
Length = 978
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/363 (45%), Positives = 225/363 (61%), Gaps = 12/363 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 224 EELYSTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVV 283
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL +L+E+Q + +KE GI E L++ T +IY DL S P+++LLYVTPE +
Sbjct: 284 VSPLRSLIEDQKMKMKELGIGCEALTADLTASAHEEIYSDLSSENPTIKLLYVTPEKISA 343
Query: 144 PGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALT 200
G +S + +H RGLL IDEAHC+S WGHDFRP Y KL++LR P VPI+ALT
Sbjct: 344 SGRLSSVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLNTLREKYNNPPVPIIALT 403
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D + L +Q+ + SSF R NL Y DL+ A L +V++
Sbjct: 404 ATATPKIVTDARDHLKMQDSKLFISSFVRDNLKY-----DLIPKAAKSLVNVVEKMKQLY 458
Query: 259 --TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C+ + L+ G+S YHAGLND R SV W++++ V+ AT+
Sbjct: 459 PGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQKSWLANKFDVICATI 518
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 519 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 578
Query: 377 NQS 379
+
Sbjct: 579 GNT 581
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 241/379 (63%), Gaps = 10/379 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ +FG+ FR+ Q + IQ L+ RD +MPTGGGKS+C+Q+PAL K G+ +V+
Sbjct: 3 SLRQSLKKYFGYDSFREGQEEIIQNALNNRDLLIIMPTGGGKSLCFQLPALLKKGVTIVI 62
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLI+LM++QV+ L + GI F++ST Q + + SGK ++LLY+ PE +
Sbjct: 63 SPLISLMQDQVMSLHDNGIGATFINSTLDFQEIKHREQLILSGK--IKLLYLAPERLISE 120
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F S L + + AIDEAHCIS WGHDFR YR+L LR P +PI ALTATA
Sbjct: 121 KFQSFLNTVAKTNAIASFAIDEAHCISEWGHDFRLEYRQLRQLRQRFPQIPITALTATAT 180
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-DAYADLCSVLKANGDTCAIV 263
P+VQ+D+++ L L+NP++ + SFNRPNL+YEVR ++ + L + L+ +G I+
Sbjct: 181 PRVQQDIIQQLRLRNPIIRRFSFNRPNLYYEVRPREKRNYHQILQLINSLEGSG----II 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T ++L+ L IS YH GL D+ RS D +I +++VATVAFGMGI+
Sbjct: 237 YCLARKTTEDLAYRLRQDNISALPYHGGLTDEMRSHHQDCFIRDDARIMVATVAFGMGIN 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD P+K +L Y D ++ + + + ++ N Q
Sbjct: 297 KPDVRFVIHHDLPRNIESYYQESGRAGRDGEPAKCILLYNPSDEYKINYFIKQKENINEQ 356
Query: 384 SFSTRERSSKKSISDFSQV 402
+ R K + ++++
Sbjct: 357 K---QAREQLKKVQEYAET 372
>gi|440296127|gb|ELP88968.1| ATP-dependent DNA helicase recQ, putative [Entamoeba invadens IP1]
Length = 517
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 224/358 (62%), Gaps = 4/358 (1%)
Query: 16 KNKPLHE----KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
K KP++ + L +L F A FR +Q D I + L+ D +MPTGGGKS+C+Q
Sbjct: 9 KTKPINAAVRYDKKLDDVLHNTFHIADFRPQQRDIILSTLNNTDTVVIMPTGGGKSLCFQ 68
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+ ++ I +V+SPLI+LM+N V L +G+ +S+ T +++ L+S P L
Sbjct: 69 LQSVLTNKITIVISPLISLMQNHVDALNARGVVSYIFNSSLTKSEASRVLAILNSTSPEL 128
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
LLYVTPE T F + + K++ G + L AIDEAHCIS WGHDFRPSY +LS L+
Sbjct: 129 YLLYVTPEQIKTQRFQNIMNKLNDNGKIGLFAIDEAHCISQWGHDFRPSYLELSYLKQTF 188
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251
P +P++ALTATA KV+ D++++L L++P + S+F+RPN+++ V YKDL ++ +L
Sbjct: 189 PQIPVIALTATATEKVKDDIIKALGLKDPNIFTSTFDRPNIYFRVLYKDLYENPQEELLK 248
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
L + IVYC R C+ L YL + G YHAG++ R SV W +
Sbjct: 249 YLTQHQQEGGIVYCSTRNECELLEKYLKSKGFRVGKYHAGMSASDRESVQKMWERKETGI 308
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V+ATVAFGMGIDR DVR V H+NIPK++E F QE+GRAGRD P++S++++G DD R
Sbjct: 309 VIATVAFGMGIDRSDVRFVVHWNIPKNIEGFIQEAGRAGRDGKPAESVIFFGNDDFSR 366
>gi|440680362|ref|YP_007155157.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
gi|428677481|gb|AFZ56247.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
Length = 724
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 249/400 (62%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEKKLKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS + +V+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNSYKVRSR-EEAIMNGK--VRLLYVAPERLVSD 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR+L LR PDVP +ALTATA
Sbjct: 124 RFLPLLDVVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYPDVPTIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L L+ P + +SFNR NL+YEVR K AYA++ +++ N + I+Y
Sbjct: 184 DRVRADIIEQLGLKQPSIHIASFNRQNLYYEVRAKS--KRAYAEILEIVREN-EGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L ++ YHAGL+D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQKDKVAALPYHAGLSDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++P+++E +YQESGRAGRD PS+ L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVIHSDLPRNIEGYYQESGRAGRDDEPSRCTLFFSFADVKTIEWSINQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
+ + + + D+++ D G+RF+ GN
Sbjct: 361 IA---KQQLRQVIDYAEGTDCRRTIQLGYFGERFAGNCGN 397
>gi|296085510|emb|CBI29242.3| unnamed protein product [Vitis vinifera]
Length = 710
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 222/334 (66%), Gaps = 6/334 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G+ LVVSPL++L+++
Sbjct: 85 FGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G L++LYVTPE ++ + F+SKL+K
Sbjct: 145 QVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ L L+ PDVP++ALTATA KVQ D+M
Sbjct: 205 CHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ IVYC R
Sbjct: 265 EMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ LLY+
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYF 417
>gi|114658901|ref|XP_510594.2| PREDICTED: Bloom syndrome protein isoform 2 [Pan troglodytes]
gi|332844655|ref|XP_003314898.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan troglodytes]
Length = 1417
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|410261436|gb|JAA18684.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|390357198|ref|XP_781064.3| PREDICTED: uncharacterized protein LOC575579 [Strongylocentrotus
purpuratus]
Length = 1391
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 231/361 (63%), Gaps = 8/361 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG QFR+ QL+AI A L G DCF LMPTGGGKS+ YQ+P + G+
Sbjct: 765 HSRE-LHKVFRKTFGLHQFRENQLEAINAALLGEDCFILMPTGGGKSLTYQLPGVLTKGV 823
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+++QV L I LS IY L P +++LYVTPE
Sbjct: 824 TIVISPLKSLIQDQVQRLVSLEIQETHLSGEMAGAAADGIYRQLCMRDPVVKMLYVTPEK 883
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ +S ++ +++RGLL+ IDEAHC+S WGHDFRP Y++L LR P VP++AL
Sbjct: 884 ISASQKLLSTMEHLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLCKLREKFPGVPMMAL 943
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCSVLKAN 256
TATA P+V+ D++ +L ++ P VL SSF+R NL + V K ++++ + S K
Sbjct: 944 TATATPRVKTDILHALKMKKPQVLTSSFDRSNLMFRVEKKQPSKMIENITKLINSQFKGK 1003
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C++++ LS GI + YHAG +DK RS+V WI+ + +VV AT+
Sbjct: 1004 ---SGIVYCLSRNECEKVADDLSNAGIKASPYHAGQSDKERSTVQTRWINGQYKVVCATI 1060
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD + +LY+ D R+ ++ K
Sbjct: 1061 AFGMGIDKADVRFVIHYSMPKSIEGYYQEAGRAGRDGGLAHCVLYFSYQDVTRLRRMIEK 1120
Query: 377 N 377
N
Sbjct: 1121 N 1121
>gi|410346341|gb|JAA40688.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|218438410|ref|YP_002376739.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
gi|218171138|gb|ACK69871.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
Length = 709
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/444 (39%), Positives = 262/444 (59%), Gaps = 42/444 (9%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ L L+ +FG+ FR Q + I+ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 2 MYQLNTLETALKQYFGYDNFRPGQREIIEEALENRDLLVIMPTGGGKSLCFQLPALLKPG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLI+LM++QV L + GI FL+S+ +++++ L + ++LLYV P
Sbjct: 62 VTVVVSPLISLMQDQVDALLDNGIGATFLNSSLDFSEIRSRETAIL---RNKIKLLYVAP 118
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + F L I + ++ AIDEAHC+S WGHDFRP YR+L LR P+VP+ A
Sbjct: 119 ERLLSEKFTPFLDTIAQQVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRKRYPNVPMFA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +VQ+D++ L L+NP + +SFNR NL+Y+++ K+ +Y L ++A+
Sbjct: 179 LTATATKRVQQDIILQLDLKNPGIHIASFNRTNLYYDIKPKE--KRSYNQLLKYIRAHQG 236
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYC+ R DE++ L GIS YHAGL D+AR+ +I +V+VATVAF
Sbjct: 237 S-GIVYCMSRRNVDEIAFRLQNDGISALPYHAGLTDEARTLNQTRFIRDDVRVMVATVAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V HF++P+++E++YQESGRAGRD P+K LL Y + D +++E+I+ +
Sbjct: 296 GMGINKPDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCLLLYSLGDLKKIEYIIEQKT 355
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
+ Q + ++ QV+D A G R ++VL Y
Sbjct: 356 NPQEQKIARQQ---------LRQVIDYAEGTECRR-------------------TIVLRY 387
Query: 438 YSFHLLKQIPVSLCKNSCDACKHP 461
+ C N+CD C+HP
Sbjct: 388 FGERFKGN-----C-NNCDNCRHP 405
>gi|407452782|ref|YP_006724507.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
gi|403313766|gb|AFR36607.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
Length = 734
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 225/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFSDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|397472473|ref|XP_003807768.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan paniscus]
gi|397472475|ref|XP_003807769.1| PREDICTED: Bloom syndrome protein isoform 2 [Pan paniscus]
Length = 1417
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|66802111|ref|XP_629849.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|60463228|gb|EAL61421.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1259
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/377 (43%), Positives = 236/377 (62%), Gaps = 7/377 (1%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ ++ + R FG FR+ Q + I + L G D F LMPTGGGKS+CYQIPAL + G+ +V
Sbjct: 512 QKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPALYQKGLTIV 571
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPLI+L+ +QV L+ G LSS + +Y+D+ S P +RLLY+TPE +
Sbjct: 572 ISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKIRLLYLTPERVVK 631
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ + L + +GL + + IDEAHC+S WGHDFRP Y++LS LR P VPILALTAT
Sbjct: 632 SDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFPKVPILALTAT 691
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTC 260
A +V+ DV+ +L ++NP+ K SFNRPNL Y+V + K ++DD + S D
Sbjct: 692 ATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKTKQVVDDMSKFIHSTYP---DKS 748
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC+ + C+ ++ L IS A YHAGL + R+ V +W R +V+VAT+AFGM
Sbjct: 749 GIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKVIVATIAFGM 808
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ DVR V H ++PKS+E +YQESGRAGRD S LLY+ D+ R + ++ +N
Sbjct: 809 GINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRNDLLI-QNSFT 867
Query: 381 NSQSFSTRERSSKKSIS 397
+ Q S R ++ S++
Sbjct: 868 SGQGSSHNTRETRDSLN 884
>gi|195054415|ref|XP_001994120.1| GH17364 [Drosophila grimshawi]
gi|193895990|gb|EDV94856.1| GH17364 [Drosophila grimshawi]
Length = 1404
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/359 (44%), Positives = 231/359 (64%), Gaps = 9/359 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 631 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 690
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q+M+ IY DL+ P ++LLYVTPE ++++
Sbjct: 691 PLKSLIFDQVSKLASLDICAKSMSGEQSMEDTMAIYRDLEGHSPLVKLLYVTPEKISSSA 750
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L + + ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 751 RFQDTLDHLSANNFISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 810
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V++D+++ L L + SSFNR NL ++V K LD+ + S ++ T +
Sbjct: 811 PRVRQDILQQLNLTHCKWFLSSFNRSNLRFQVLPKKGASTLDE----MRSFIQTRPITAS 866
Query: 262 -IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE++ +SA GI AYHAGL D AR S DWI+++ +V+ AT+AFGM
Sbjct: 867 GIIYCLSRKECDEVAHKMSAAGIRAVAYHAGLTDTARESRQKDWITNKVRVICATIAFGM 926
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ +++
Sbjct: 927 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMMRLKKMMDADRA 985
>gi|196013025|ref|XP_002116374.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
gi|190580965|gb|EDV21044.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
Length = 752
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 243/388 (62%), Gaps = 27/388 (6%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H + ++ R FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA+ G+
Sbjct: 65 HFSNKMKEIFRSKFGLHKFRTNQLEAINAALLGYDCFILMPTGGGKSLCYQLPAIVNDGV 124
Query: 81 VLVVSPLIALMENQVIGLKEKGI-AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPL +L+++QV GL G+F + TM+ ++Y++L PS+ LLY+TPE
Sbjct: 125 TVVISPLRSLIQDQVQGLLNLDFPVGQF-TGEMTMKENNEMYQELYKRIPSISLLYLTPE 183
Query: 140 -LTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS--------------------SWGHDFR 178
L+A+ +S L+ +H R +L+ IDEAHCIS WGHDFR
Sbjct: 184 KLSASSKLLSVLRSLHLRKMLSRFVIDEAHCISQVTTYASCSLCIYNISCTYLQWGHDFR 243
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
P Y+KLS++R P VP++ALTATA P+V+KD++ L + NP+ SFNRPNL Y V
Sbjct: 244 PDYKKLSAIRENFPGVPVMALTATATPRVRKDILNQLKVPNPIWFVQSFNRPNLQYSVLP 303
Query: 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
K+ ++ ++ + + IVYCL R CD +S+ L GI+ +YHAGL+ K R
Sbjct: 304 KNKC--TAQEIIKIVNSQFRNESGIVYCLSRNECDRVSSTLREAGIAALSYHAGLDAKER 361
Query: 298 SSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
++V WI+ +R ++V AT+AFGMGID+ DVR V H+++PKS E +YQESGRAGRD + +
Sbjct: 362 TNVQKRWITENRCKIVCATIAFGMGIDKADVRFVIHYSLPKSTEGYYQESGRAGRDGMLA 421
Query: 357 KSLLYYGMDDRRRMEFILSKNQSKNSQS 384
K +L+Y D R+ +++ + +N ++
Sbjct: 422 KCILFYTYGDACRIRRMINSERDQNQET 449
>gi|313677434|ref|YP_004055430.1| ATP-dependent DNA helicase recQ [Marivirga tractuosa DSM 4126]
gi|312944132|gb|ADR23322.1| ATP-dependent DNA helicase RecQ [Marivirga tractuosa DSM 4126]
Length = 725
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 229/353 (64%), Gaps = 10/353 (2%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
+ E+EA +K L+ FG+ QFR Q +Q +++G++ F +MPTG GKS+CYQ+PA+++
Sbjct: 2 IEEQEATLKEKLKEVFGYNQFRGNQELIMQNLINGKNTFVIMPTGAGKSLCYQLPAISRE 61
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G LVVSPLIALM+NQV L G+ FL+ST T ++ +++ SG +L+LLYV P
Sbjct: 62 GTALVVSPLIALMKNQVDTLVALGVNAAFLNSTLTKTETKRVKKEVMSG--NLKLLYVAP 119
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK+ + ++ AIDEAHCIS WGHDFRP YR++ S+ + ++PI+A
Sbjct: 120 ESLTKEENVEFLKQAN----ISFAAIDEAHCISEWGHDFRPEYRRIKSILQQISNIPIIA 175
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L ++ V KSSFNR NL+YEVR K+ A L L
Sbjct: 176 LTATATPKVQLDIQKNLNMEEANVFKSSFNRENLYYEVRPKN---QAKKQLIRFLNERKG 232
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C ++YCL R +E++ +L+ G + A YHAGL R DD+++ ++VAT+AF
Sbjct: 233 KCGVIYCLSRKKVEEIAEFLNVNGFNAAPYHAGLEGATRMKNQDDFLNEDVDIIVATIAF 292
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H++ PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 293 GMGIDKPDVRFVIHYDTPKSVEGYYQETGRAGRDGLVGDCLMFYSYNDILKLE 345
>gi|313205605|ref|YP_004044782.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484930|ref|YP_005393842.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312444921|gb|ADQ81276.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380459615|gb|AFD55299.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 734
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 225/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFNDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 260/447 (58%), Gaps = 31/447 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG+ +FR Q + I L+ RD +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 9 ETLEHALKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPALLKNGVTIV 68
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L GI FL+S+ T + K + +G+ ++LLYV PE
Sbjct: 69 VSPLIALMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGE--IKLLYVAPERLNQ 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L +H + AIDEAHC+S WGHDFRP YRKL+ LR+Y P VP L LTATA
Sbjct: 127 EFISNFLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFPKVPWLGLTATA 186
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D++ L L+ P V +SFNRPNL+YEVR K Y +L + +K + + I+
Sbjct: 187 TDRVRSDIINQLELREPHVHIASFNRPNLYYEVRRKTTA--PYKELLAQVKQS-EGSGII 243
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L GI YHAGL+ + R+ + +I +V+VATVAFGMGI+
Sbjct: 244 YCLSRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIVATVAFGMGIN 303
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+ LY+GM D + +E++++ Q + +
Sbjct: 304 KPDVRFVIHYDLPRNIEGYYQESGRAGRDGEPAHCTLYFGMGDIKTIEYLIA--QKVDPE 361
Query: 384 SFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLL 443
+ E + + +V++ A R ++ +G+F
Sbjct: 362 TGMALEDEQRIATQQLRRVINYAEATECR----------RIIQLGYF------------G 399
Query: 444 KQIPVSLCKNSCDACKHPNLLAKYLGE 470
+ P + C N CD CK+P ++ + E
Sbjct: 400 ESFPGN-CDN-CDNCKYPRPISDWTIE 424
>gi|224074554|ref|XP_002304389.1| predicted protein [Populus trichocarpa]
gi|222841821|gb|EEE79368.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 224/334 (67%), Gaps = 6/334 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +R Q + I A++SGRD +M GGGKS+CYQ+PA+ + G+ LV+SPL++L+++
Sbjct: 89 FGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVISPLLSLIQD 148
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 149 QVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEK 208
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ +VP++ALTATA KVQ DVM
Sbjct: 209 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNVPVVALTATATQKVQYDVM 268
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ +N ++ IVYC R
Sbjct: 269 EMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGKVVVDEIAEFIQESYSNSES-GIVYCFSR 327
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++A L GI+ YHA ++ AR V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 328 KECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMGINKPDVR 387
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ +L+Y
Sbjct: 388 FVIHHSLSKSMETYYQESGRAGRDGLPSECVLFY 421
>gi|126273765|ref|XP_001368666.1| PREDICTED: Bloom syndrome protein [Monodelphis domestica]
Length = 1401
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 226/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI AVL G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 635 HTKE-MMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGV 693
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 694 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 753
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 754 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPMMAL 813
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 814 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYSVLPKKPKKVAFDCLEWIRKHHPHD 873
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ +YHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 874 SGIIYCLSRRECDTMADTLQKDGLAALSYHAGLSDSARDEVQHKWINQDGCQVICATIAF 933
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 934 GMGIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEK 993
Query: 379 SKNSQSFST 387
NS + T
Sbjct: 994 DGNSHTRQT 1002
>gi|156363725|ref|XP_001626191.1| predicted protein [Nematostella vectensis]
gi|156213059|gb|EDO34091.1| predicted protein [Nematostella vectensis]
Length = 424
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/390 (42%), Positives = 241/390 (61%), Gaps = 12/390 (3%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L K LR F +F+ + Q A + V G +D F MPTG GKS+CYQ+PA+ PGI +V
Sbjct: 5 LKKTLRNVFKFREFKSELQQRACETVSKGLQDVFVSMPTGSGKSLCYQLPAVVAPGITIV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIAL+++QV L+ I E L+S + ++ +DL KP+++LLY+TPEL AT
Sbjct: 65 FSPLIALIQDQVTYLRTLKITVETLNSKLPESERKRVMKDLYFVKPTVKLLYITPELAAT 124
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
PGF L ++ R LL+L A+DEAHC+S WGHDFRP Y +L LRN DV +ALTATA
Sbjct: 125 PGFQKVLDSLYKRKLLSLFAVDEAHCVSQWGHDFRPDYLRLGKLRNKYKDVAWVALTATA 184
Query: 204 APKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------- 255
+V++D++ +L +Q N V KS RPNL+Y++ +K+LL+D YADL A
Sbjct: 185 TSRVKEDILTALHMQSNVAVFKSQCYRPNLYYDISFKELLEDPYADLKQFADAALEDEDS 244
Query: 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
I+YC R C E+++ LS G+S YHAGL R V +W+ + V+ A
Sbjct: 245 GEAKGSGIIYCRTRDACQEVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWMEGKVAVICA 304
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T++FGMG+D+ DVR V H+++P+SME +YQESGRAGRD PS LYY +R ++ F++
Sbjct: 305 TISFGMGVDKGDVRFVAHWSLPQSMEGYYQESGRAGRDGQPSYCRLYYSRAERDQVLFLI 364
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQVLD 404
+ K + + +++ +S F V++
Sbjct: 365 KNDMKKRLKKANAAQKNKAVQVS-FQAVVE 393
>gi|426346798|ref|XP_004041058.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Gorilla gorilla
gorilla]
Length = 1006
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/517 (37%), Positives = 286/517 (55%), Gaps = 50/517 (9%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+ I
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH------AAI 416
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFIS 487
+ VL C CD C++P + + L A+ + + +S+ I
Sbjct: 417 AKYFGDVL-------------PACAKGCDHCQNPTAVRRQL----EALERSSSWSKTCIG 459
Query: 488 SQ-------DMTDGGQ--YSEFWNRDDEASGSEEDIS 515
++ +GG+ Y F +R DE SG D S
Sbjct: 460 PSQGNGFDPELYEGGRKGYGGF-SRYDEGSGGSGDES 495
>gi|386320424|ref|YP_006016586.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|416111385|ref|ZP_11592598.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|442315223|ref|YP_007356526.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
gi|315022665|gb|EFT35690.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|325334967|gb|ADZ11241.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|441484146|gb|AGC40832.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
Length = 734
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 225/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFSDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|168029873|ref|XP_001767449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681345|gb|EDQ67773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/333 (48%), Positives = 220/333 (66%), Gaps = 4/333 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G LV+SPL++L+++
Sbjct: 80 FGIKSYRQNQHEIINAVMSGRDVIVIMAAGGGKSLCYQLPAMLRTGTALVISPLLSLIQD 139
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL GI+ L+ST T + IY+ L+ G+ L++LYVTPE A + F+SKL+K
Sbjct: 140 QVMGLTALGISASMLTSTTTKDEEKSIYKSLEKGEGDLKILYVTPEKVAKSKRFVSKLEK 199
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y++L L+ P VP++ALTATA +VQ D+
Sbjct: 200 CNHGGRLSLIAIDEAHCCSQWGHDFRPDYKQLGILKKQFPRVPMIALTATATERVQTDLR 259
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYAD-LCSVL--KANGDTCAIVYCLERT 269
E L + S+ NRPNLFYEVR K A D + S + K + IVYC R
Sbjct: 260 EMLQITRCEKFVSTVNRPNLFYEVREKKANGSAAIDDIASFILDKYSKKESGIVYCFSRK 319
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++A L GIS A YHA + + RSSV W +++ QV+V TVAFGMGI++ DVR
Sbjct: 320 ECEQVAAELRKRGISAAHYHADMKPETRSSVHMRWSTNKLQVIVGTVAFGMGINKPDVRF 379
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KS+E +YQESGRAGRD LP+ LLY+
Sbjct: 380 VIHHSLSKSLETYYQESGRAGRDGLPAHCLLYF 412
>gi|255557667|ref|XP_002519863.1| DNA helicase recq1, putative [Ricinus communis]
gi|223540909|gb|EEF42467.1| DNA helicase recq1, putative [Ricinus communis]
Length = 714
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/338 (47%), Positives = 226/338 (66%), Gaps = 7/338 (2%)
Query: 31 RWH-FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
++H FG +R Q + + AV+SGRD +M GGGKS+CYQ+PA+ + G+ LV+SPLI+
Sbjct: 88 KFHVFGITSYRPNQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVSLVISPLIS 147
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
L+++QV+GLK GI L+ST + + + IY+ L+ G+ L++LYVTPE ++ + FMS
Sbjct: 148 LIQDQVMGLKALGIPAYKLTSTTSKEDEKFIYKALEKGEEMLKILYVTPEKVSKSKRFMS 207
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
KL+K H RG L+++AIDEAHC S WGHDFRP Y+ L L+ P+VP+LALTATA KVQ
Sbjct: 208 KLEKCHHRGHLSIIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPNVPVLALTATATQKVQ 267
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVY 264
D+ME L + + S+ NRPNLFY VR K ++ D A+ N ++ IVY
Sbjct: 268 YDLMEMLHIPKCVRFVSTVNRPNLFYMVREKSSVGKVVIDEIAEFIRESYPNNES-GIVY 326
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R C++++A L GIS YHA ++ AR V W ++ QV+V TVAFGMGI++
Sbjct: 327 CFSRKECEQVAADLRERGISADYYHADMDVNAREKVHMRWSQNKLQVIVGTVAFGMGINK 386
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
DVR V H ++ KSME +YQESGRAGRD PS+ +L++
Sbjct: 387 PDVRFVIHHSLSKSMETYYQESGRAGRDGAPSECVLFF 424
>gi|307183296|gb|EFN70165.1| Bloom syndrome protein-like protein [Camponotus floridanus]
Length = 1313
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/361 (45%), Positives = 221/361 (61%), Gaps = 3/361 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 618 HSQEML-KIFRQRFGLYTFRPNQLQAINATLLGFDCFVLMPTGGGKSLCYQLPALLSVGL 676
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LSS+ T +Y +L +P L++LYVTPE
Sbjct: 677 TIVISPLKSLILDQVQKLTSLDIPAAHLSSSITDNQAEAVYRELAKKEPILKILYVTPEK 736
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ + L ++ R LL IDEAHC+S WGHDFRP Y++L LR+ P VP +AL
Sbjct: 737 ISASTKLCNTLTILYERELLARFVIDEAHCVSQWGHDFRPDYKRLKCLRDNYPKVPTMAL 796
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+ D++ L + NP S FNRPNL Y + K + + + ++ +T
Sbjct: 797 TATATPRVRTDILHQLGMTNPKWFMSGFNRPNLRYSIITKKGKNCSDEVIAMIMTKYRNT 856
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C IVYCL R CD+ +A + GI +YHAGL D RS+ WI+ V+ AT+AFG
Sbjct: 857 CGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLTDNQRSNCQGRWIADEIHVICATIAFG 916
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS-KNQ 378
MGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++ NQ
Sbjct: 917 MGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGEIADCILFYHYADMHRIRKMIELDNQ 976
Query: 379 S 379
S
Sbjct: 977 S 977
>gi|261289349|ref|XP_002603118.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
gi|229288434|gb|EEN59129.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
Length = 666
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 221/352 (62%), Gaps = 2/352 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +FR QL+A A L G+DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +L+++
Sbjct: 20 FGLHRFRTNQLEACNAALLGKDCFILMPTGGGKSLCYQLPAIVSGGVTIVISPLKSLIQD 79
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV L + LS + QV + +Y DL P +LLYVTPE ++++ +S LK
Sbjct: 80 QVSKLNGLEVPAAHLSGELSQQVASGVYMDLARRTPQTKLLYVTPEKVSSSEKLLSTLKS 139
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ RGLL+ IDEAHC+S WGHDFRP Y+KL LR P VP++ALTATA P+V++D++
Sbjct: 140 LYQRGLLDRFVIDEAHCVSQWGHDFRPDYKKLCVLRKSFPGVPMMALTATATPRVRRDIL 199
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
L + +P SFNR NL Y V K + L + IVYCL R C+
Sbjct: 200 HQLGMTDPRWFVQSFNRTNLHYSVMPKKVKSATKEVLELINSRFRSKTGIVYCLSRKECE 259
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+S L G S AYHAG++DK R+ + D W K V+ AT+AFGMGID+ DVR V H
Sbjct: 260 TVSDELCRNGTSACAYHAGMSDKERARIQDLWPEHYK-VICATIAFGMGIDKPDVRFVIH 318
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+++PKS+E +YQESGRAGRD S +L+Y D+ RM+ ++ ++ +S
Sbjct: 319 YSLPKSVEGYYQESGRAGRDGEASDCILFYNYHDKMRMQKLIHMDKEATYES 370
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/400 (42%), Positives = 248/400 (62%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEKALKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E + +GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRTNNISATFLNSSLNAYKVRSR-EEAIMNGK--IKLLYVAPERLVSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR+L LR PDVP +ALTATA
Sbjct: 124 RFLPLLDVVKEKVGISTFAIDEAHCVSEWGHDFRPEYRQLRLLRKRYPDVPTIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L L+ P + +SFNR NL YEVR K + AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIEQLGLKQPSIHIASFNRQNLHYEVRSKS--NRAYAELLEIVREN-EGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DE++ L +S YHAGL+D+ RS +I +V+VATVAFGMGI++
Sbjct: 241 CLTRKKVDEITLKLQNDKVSVLPYHAGLSDEERSKNQTRFIRDDVRVMVATVAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++P+++E++YQESGRAGRD PSK L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLFFNYGDIKTIEWSINQKPDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
+ + + + D+++ D G+RF GN
Sbjct: 361 IA---KQQLRQVIDYAEGTDCRRTIQLSYFGERFPGNCGN 397
>gi|189502511|ref|YP_001958228.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497952|gb|ACE06499.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
Length = 724
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 227/347 (65%), Gaps = 9/347 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG+ FR+ Q I+ +L G++ F +MPTGGGKS+CYQ+PA+ + G+ +++S
Sbjct: 9 LYKELKEIFGYDNFREDQEAIIKNILQGKNTFVIMPTGGGKSLCYQLPAIMQEGLAIIIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ +GI L+ST + +V + +++ SG + ++LYV PE
Sbjct: 69 PLIALMKDQVDQLQSRGIKAALLNSTLSQKVINETKQEVLSG--NTKMLYVAPETLNKED 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAA 204
++ LK + L+ +A+DEAHCIS WGHDFRP YR + + N L VPI+ALTATA
Sbjct: 127 NLAFLK----QAKLSFIAVDEAHCISDWGHDFRPEYRNIRYVANQQLGRVPIIALTATAT 182
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQ D++ +L + + +SSFNRPNL+YE+RYK+ + A L ++K IVY
Sbjct: 183 PRVQLDILNNLDINDATTFQSSFNRPNLYYEIRYKE--EQANKQLIKLIKEQPQIMGIVY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R DEL+A L+ I A YHAGL+ R + ++ + V+VAT+AFGMGID
Sbjct: 241 CQSRKQVDELAALLNLNDIKAAPYHAGLDANVRVKNQEAFLQKQYNVIVATIAFGMGIDT 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H+++PKS+EA+YQE+GRAGRD LPS L+ Y +D R+E
Sbjct: 301 PDVRFVIHYDMPKSLEAYYQETGRAGRDSLPSTCLMLYNPEDFIRLE 347
>gi|23503567|dbj|BAC20378.1| RECQL5 protein [Gallus gallus]
Length = 446
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 241/403 (59%), Gaps = 17/403 (4%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++Q L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 83 PLIALIQDQGTHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS 142
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA
Sbjct: 143 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATK 202
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+ Q D++ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T
Sbjct: 203 QDQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYAHLKDFCLKALEVKNTTG 262
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 263 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 322
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD P LYY +DR ++ F++
Sbjct: 323 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPPCCRLYYSRNDRDQVSFLIK 382
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
K SK + T + S K ++ F ++ F LG R+
Sbjct: 383 KELSKIQEKKGTLKESDKSVMTAFDAIVS-----FCEELGCRH 420
>gi|158338684|ref|YP_001519861.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
gi|158308925|gb|ABW30542.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
Length = 736
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/388 (43%), Positives = 247/388 (63%), Gaps = 6/388 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + ++L + L+ +FG+ QFR Q I+A L +D +MPTGGGKS+C+Q+P L P
Sbjct: 8 PGSDFKSLEEALKHYFGYDQFRVGQRPVIEAALQRQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L+ I FL+S+ + ++ SGK ++LLYV P
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGK--IKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F++ L ++ ++ L A+DEAHC+S WGHDFRP YR+L+ +R VP+ A
Sbjct: 126 ERLLNESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYTQVPVYA 185
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D+++ L L+ P V +SFNRPNL+YEVR K YADL ++ +G
Sbjct: 186 LTATATERVRQDIIQQLQLRQPFVHVASFNRPNLYYEVRPKS--RQVYADLYREIRQHGQ 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E+SA L A GIS YHAG++D AR+ + +I QV+VATVAF
Sbjct: 244 DSGIVYCLSRREVNEISARLQADGISALPYHAGMSDSARTLNQERFIRDDVQVMVATVAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+N+P+++E +YQESGRAGRD PSK LL++ D +E+++ +
Sbjct: 304 GMGIDKPDVRFVIHYNLPRNIEGYYQESGRAGRDGEPSKCLLFFSTKDIHTIEWLIERK- 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVA 406
+ ++ + E + + QV+D A
Sbjct: 363 -ADPETGNPLENEQRIARQQLRQVIDYA 389
>gi|345486372|ref|XP_001605988.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1211
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/369 (43%), Positives = 225/369 (60%), Gaps = 4/369 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L + + FG QFR QL AI AV+ G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 511 HSQEML-HVFKTRFGLHQFRPNQLPAINAVILGHDCFVLMPTGGGKSLCYQLPALLAPGV 569
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +Q L I+ +L+ + + +Y L + + +L+LLYVTPE
Sbjct: 570 TIVISPLRSLIVDQTQKLLSLDISALYLTGDLSNEQMNGVYRKLYNTESNLKLLYVTPEK 629
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ + F L +++ G L IDE HC+S WGHDFRP Y+KLS LR P VPI+AL
Sbjct: 630 ISKSTKFCDSLLRLYRDGKLARFVIDEVHCVSQWGHDFRPDYKKLSMLRERFPGVPIIAL 689
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA +V+ D++ L LQ+P SSFNRPNL Y V + Y + ++K +
Sbjct: 690 TATATQRVRSDILHQLHLQSPKWFISSFNRPNLRYTVTLRKS-KYPYQLVLDLIKTKFPN 748
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C I+YC R CD L+ L GI +YHAGL+DK R+ W+S + +V+ AT+AF
Sbjct: 749 DCGIIYCFSRNDCDNLAEALKKEGIQALSYHAGLDDKVRTDRQIQWVSEKVKVICATIAF 808
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H +PKS+E +YQESGRAGRD P+ +L Y D R ++ N+
Sbjct: 809 GMGIDKPNVRYVIHATMPKSIEGYYQESGRAGRDGEPADCILLYNYSDMHRYRTMMESNE 868
Query: 379 SKNSQSFST 387
N ++ T
Sbjct: 869 YANKEALKT 877
>gi|119510429|ref|ZP_01629563.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
gi|119464958|gb|EAW45861.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
Length = 721
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 233/359 (64%), Gaps = 7/359 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+++FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYNFGYDQFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ I+ FL+S+ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGK--VRLLYVAPERLLSER 124
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L +H + ++ AIDEAHC+S WGHDFRP YR+L SLR PDVP +ALTATA
Sbjct: 125 FLPFLDLVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDVPTIALTATATD 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA++ +++ D I+YC
Sbjct: 185 RVRGDIIQQLGLKQPSIHLASFNRQNLYYEVRPKT--KSAYAEILELIRET-DGSTIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R DEL+ L + +YHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 242 LTRKKVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFIRDDVRVIVATIAFGMGINKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF++P+++E++YQESGRAGRD PS+ +++ D + +E+ S NQ + Q
Sbjct: 302 DVRLVVHFDLPRNLESYYQESGRAGRDSEPSRCTMFFSFSDIKTIEW--SINQKADPQE 358
>gi|195112008|ref|XP_002000568.1| GI22449 [Drosophila mojavensis]
gi|193917162|gb|EDW16029.1| GI22449 [Drosophila mojavensis]
Length = 1409
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 233/356 (65%), Gaps = 3/356 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 638 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 697
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q++ IY DL+S P ++LLYVTPE ++++P
Sbjct: 698 PLKSLIFDQVSKLSSLDICAKSISGDQSLDEVMTIYRDLESHPPLVKLLYVTPEKISSSP 757
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++++ ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 758 RFQDTLDQLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 817
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA-IV 263
P+V++D+++ L L + SSFNR NL Y+V K + D+ + +++ T + I+
Sbjct: 818 PRVRQDILQQLNLTHCKWFLSSFNRRNLRYQVLPKKGVS-TLDDMRNFIQSRPATASGII 876
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE++ + A GI +YHAGL D R S DWI+++ +V+ AT+AFGMGID
Sbjct: 877 YCLSRKECDEVAKKMCAVGIRALSYHAGLTDVVRESRQKDWITNKVRVICATIAFGMGID 936
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D +R++ ++ +++
Sbjct: 937 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMQRLKKMMDADRA 992
>gi|178056740|ref|NP_001116556.1| Bloom syndrome protein [Sus scrofa]
gi|168084100|dbj|BAG09489.1| Bloom syndrome protein [Sus scrofa]
Length = 1426
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 223/356 (62%), Gaps = 3/356 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA G+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ +++R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S+ LL+Y D R++ ++
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLI 1017
>gi|346225175|ref|ZP_08846317.1| putative ATP-dependent DNA helicase [Anaerophaga thermohalophila
DSM 12881]
Length = 726
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/346 (47%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q D I+ VL G D F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 11 LKKHFGFDTFKGNQEDIIKNVLDGNDTFVLMPTGGGKSLCYQLPALILDGTAIVISPLIA 70
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ + GIA FL+S+ T ++ ED+ SGK RLLYV PE
Sbjct: 71 LMKNQVDAMRNFSEDDGIA-HFLNSSLTKSAIQQVKEDVISGKT--RLLYVAPESLTKDE 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + N + + P++ALTATA P
Sbjct: 128 NIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGEAPLIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNLFYE+R K +A D+ VLK N I+YC
Sbjct: 184 KVQHDIQKNLGMLDANVFKSSFNRPNLFYEIRPKV---NATRDIIKVLKENPGKSVIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ L GI YHAG++ RS D ++ V+VAT+AFGMGID+
Sbjct: 241 LSRKKVEELAETLVVNGIKALPYHAGMDAATRSGNQDKFLMEDIDVIVATIAFGMGIDKP 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR+V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 301 DVRMVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSYKDIQKLE 346
>gi|449516333|ref|XP_004165201.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 586
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 225/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + AV+SGRD +M GGGKS+CYQ+PAL GI LVVSPL++L+++
Sbjct: 86 FGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIALVVSPLLSLIQD 145
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+S + + + IY++L+ G+ S+++LYVTPE ++ + FMSKL+K
Sbjct: 146 QVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKVSKSKRFMSKLEK 205
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y+ L L+ P+ P++ALTATA +VQ D++
Sbjct: 206 CYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNAPVIALTATATQRVQNDLV 265
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ I+YC R
Sbjct: 266 EMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFIQESYPNNES-GIIYCFSR 324
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +SR QV+V TVAFGMGI++ DVR
Sbjct: 325 KECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMGINKPDVR 384
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ LLYY D R
Sbjct: 385 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPR 425
>gi|403258502|ref|XP_003921799.1| PREDICTED: Bloom syndrome protein [Saimiri boliviensis boliviensis]
Length = 1499
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1008
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1009 DGNHHTRET 1017
>gi|293332763|ref|NP_001168975.1| uncharacterized protein LOC100382802 [Zea mays]
gi|223974195|gb|ACN31285.1| unknown [Zea mays]
Length = 710
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 158/333 (47%), Positives = 216/333 (64%), Gaps = 4/333 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 85 FGISSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ IY+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLSALGIPAYMLTSTTNKEVEKFIYKTLDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D+M
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERT 269
E L + + S+ NRPNLFY+V K + D + + + I+YC R
Sbjct: 265 EMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVIDEITKFISESYPNNESGIIYCFSRK 324
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L GIS YHA ++ R + W + QV+V TVAFGMGI++ DVR
Sbjct: 325 ECEQVAKELRERGISADYYHADMDIVNREKIHMRWSKGKSQVIVGTVAFGMGINKPDVRF 384
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ +LYY
Sbjct: 385 VIHHSLSKSMETYYQESGRAGRDGLPSECILYY 417
>gi|328697674|ref|XP_001952385.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 164/366 (44%), Positives = 223/366 (60%), Gaps = 4/366 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L + R FG FR QL+ I A L G DCF LMPTGGGKS+CYQ+PA+ G+
Sbjct: 438 HSRE-LFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVISKGV 496
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
LV+SPL +L+ +Q LK I L + + I+ L +P L++LYVTPE
Sbjct: 497 TLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLKMLYVTPEK 556
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ L +H RG L + IDEAHC+S WGHDFRP Y++L R PDVPI+AL
Sbjct: 557 IAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYPDVPIMAL 616
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA +V++DV+ L + + SSFNRPNL Y+V K A A++ +++K +
Sbjct: 617 TATATTRVREDVLHQLQISGTKLFLSSFNRPNLLYKVVPKKG-KSAMAEIANLIKEKYKN 675
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R CD + Y+ GI +YHAGL+D R+ V WI+++ +V AT+AF
Sbjct: 676 QSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNLVCATIAF 735
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD S LYY D R+ ++ +
Sbjct: 736 GMGIDKPDVRYVFHYSLPKSIEGYYQESGRAGRDGKTSHCFLYYSYQDMHRIRKLIELDD 795
Query: 379 SKNSQS 384
S N +S
Sbjct: 796 SGNHES 801
>gi|440748399|ref|ZP_20927652.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
gi|436483223|gb|ELP39291.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
Length = 725
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 223/350 (63%), Gaps = 12/350 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG FR Q + VL GR+ F +MPTG GKS+CYQ PA+ G +
Sbjct: 6 KEKLKKI----FGFNNFRGNQEPIVGNVLIGRNTFVIMPTGAGKSLCYQFPAVVSEGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L G+ FL+ST TK+ +++ SGK +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLNAFGVNAYFLNSTLNKSEITKVKKEVLSGKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LK+ L+ VAIDEAHCIS WGHDFRP YRK+ S+ + P++PI+ALTA
Sbjct: 120 KDENIAFLKE----AKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIGQIGPELPIVALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNRPNLFYEVR K + ++ + +K+
Sbjct: 176 TATPKVQQDIQRNLQMEEADIFKSSFNRPNLFYEVRPK-VKNETKKAIIKYIKSQKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L GIS A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAELLKVNGISAAPYHAGLDQAVRIKNQDDFLNEEIDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y DD ++E
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYDDIIKLE 344
>gi|198433869|ref|XP_002126337.1| PREDICTED: similar to RecQ protein-like 5 [Ciona intestinalis]
Length = 1114
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 180/448 (40%), Positives = 254/448 (56%), Gaps = 33/448 (7%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ +L F H QF+ + Q +AI + +D F MPTG GKS+CYQ+PA+ G+ LV
Sbjct: 13 ITHILHNTFKHKQFKSQVQKEAILKICQRKKDAFVSMPTGAGKSLCYQLPAVFFGGVSLV 72
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM +Q+ LK I L+S QT+ + ++ DL S S RLLY+TPE TAT
Sbjct: 73 ISPLIALMCDQLNHLKRFNIVARTLNSKQTVSERNEVLADLFSPDSSCRLLYITPEQTAT 132
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
FM + K+H+R ++++ IDEAHC+S WGHDFRP Y KL SLR L +V +ALTATA
Sbjct: 133 AAFMELVMKLHARSKISMLIIDEAHCVSQWGHDFRPDYMKLGSLRQKLVNVQCIALTATA 192
Query: 204 APKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL---------CSVL 253
+VQKD+ L L + + + RPNL+Y+V+ K+L+ D Y DL S+
Sbjct: 193 TAEVQKDIFNLLHLPTSTAIFNTGVFRPNLYYDVKVKELVGDCYLDLQKFCQKALKISIA 252
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K+ + IVYC +R C +SA L G+ YHAGL++K R SV DW S + ++V
Sbjct: 253 KSKPEGAGIVYCHKREDCMTISAELLKRGLLAKPYHAGLSNKERESVQTDWTSGKVPIIV 312
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATV+FGMG+D+ +VR V H+ IPKSM +YQESGRAGRD S LYY DR + F+
Sbjct: 313 ATVSFGMGVDKSNVRFVAHWTIPKSMAGYYQESGRAGRDGEQSLCRLYYSRTDRNNINFL 372
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSL 433
+ K+ R+R+ KS + F + + + FS ++ I F +
Sbjct: 373 IRKD--------FDRKRAKSKSETQFKKHVQAITENFSSLVNYCEGSKCRHAAIAAFFND 424
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACKHP 461
+ C + CD+CK+P
Sbjct: 425 AM-------------PDCNDQCDSCKNP 439
>gi|355692996|gb|EHH27599.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1009 DGNHHTRET 1017
>gi|296204062|ref|XP_002749167.1| PREDICTED: Bloom syndrome protein isoform 2 [Callithrix jacchus]
Length = 1415
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERRLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G+S AYHAGL+D AR + WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLSALAYHAGLSDSARDEIQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1008
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1009 DGNHHTRET 1017
>gi|195451292|ref|XP_002072850.1| GK13825 [Drosophila willistoni]
gi|194168935|gb|EDW83836.1| GK13825 [Drosophila willistoni]
Length = 1457
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 226/358 (63%), Gaps = 3/358 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 685 MTQALSYSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q+M IY DL+S P ++LLYVTPE ++++
Sbjct: 745 PLKSLIFDQVNKLASLDICAKSMSGEQSMSDAMTIYRDLESHPPLVKLLYVTPEKISSSA 804
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 805 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 864
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L L SSFNR NL Y+V K D+ + +K+ ++ I+
Sbjct: 865 PRVRLDILSQLNLTQCKWFLSSFNRSNLRYKVLPKKGAS-TLEDISAFIKSRPANSSGII 923
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CD++S + GI AYHAGL+D R S DWI S+ +V+ AT+AFGMGID
Sbjct: 924 YCLSRKECDDVSQKMCKAGIRSVAYHAGLSDTERESRQKDWILSKVRVICATIAFGMGID 983
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+ DVR V H+++PKS+E +YQE+GRAGRD ++ +LYY D R++ +L +++ N
Sbjct: 984 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDIAECILYYNYSDMLRLKKMLDGDRALN 1041
>gi|109082375|ref|XP_001097543.1| PREDICTED: Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1009 DGNHHTRET 1017
>gi|402875293|ref|XP_003901445.1| PREDICTED: Bloom syndrome protein-like [Papio anubis]
Length = 1042
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 276 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 334
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 335 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 394
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 395 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 454
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 455 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 515 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 574
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 575 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 634
Query: 379 SKNSQSFST 387
N + T
Sbjct: 635 DGNHHTRET 643
>gi|4557365|ref|NP_000048.1| Bloom syndrome protein [Homo sapiens]
gi|1705486|sp|P54132.1|BLM_HUMAN RecName: Full=Bloom syndrome protein; AltName: Full=DNA helicase,
RecQ-like type 2; Short=RecQ2; AltName: Full=RecQ
protein-like 3
gi|1072122|gb|AAA87850.1| Bloom's syndrome protein [Homo sapiens]
gi|58003498|gb|AAW62255.1| Bloom syndrome [Homo sapiens]
gi|62739395|gb|AAH93622.1| Bloom syndrome [Homo sapiens]
gi|75517719|gb|AAI01568.1| Bloom syndrome [Homo sapiens]
gi|92096020|gb|AAI15033.1| Bloom syndrome [Homo sapiens]
gi|92097932|gb|AAI15031.1| Bloom syndrome [Homo sapiens]
gi|119622513|gb|EAX02108.1| Bloom syndrome, isoform CRA_b [Homo sapiens]
Length = 1417
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|383420697|gb|AFH33562.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1009 DGNHHTRET 1017
>gi|328725542|ref|XP_001947924.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 164/366 (44%), Positives = 223/366 (60%), Gaps = 4/366 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L + R FG FR QL+ I A L G DCF LMPTGGGKS+CYQ+PA+ G+
Sbjct: 438 HSRE-LFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVISKGV 496
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
LV+SPL +L+ +Q LK I L + + I+ L +P L++LYVTPE
Sbjct: 497 TLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLKMLYVTPEK 556
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ L +H RG L + IDEAHC+S WGHDFRP Y++L R PDVPI+AL
Sbjct: 557 IAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYPDVPIMAL 616
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA +V++DV+ L + + SSFNRPNL Y+V K A A++ +++K +
Sbjct: 617 TATATTRVREDVLHQLQISGTKLFLSSFNRPNLLYKVVPKKG-KSAMAEIANLIKEKYKN 675
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R CD + Y+ GI +YHAGL+D R+ V WI+++ +V AT+AF
Sbjct: 676 QSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNLVCATIAF 735
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD S LYY D R+ ++ +
Sbjct: 736 GMGIDKPDVRYVFHYSLPKSIEGYYQESGRAGRDGKTSHCFLYYSYQDMHRIRKLIELDD 795
Query: 379 SKNSQS 384
S N +S
Sbjct: 796 SGNHES 801
>gi|354566185|ref|ZP_08985358.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
gi|353546693|gb|EHC16141.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
Length = 719
Score = 321 bits (822), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/365 (44%), Positives = 238/365 (65%), Gaps = 7/365 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ FR Q + ++ LS RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEKALKYHFGYDNFRPGQREIVEDALSNRDLLIIMPTGGGKSLCFQLPALIKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L++ G+A FL SS + Q +++ + + GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRKNGVAATFLNSSLNSYQTRSR-EQYILQGK--VKLLYVAPERLVSD 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L IH + ++ AIDEAHC+S WGHDFRP YR+L LR DVP A TATA
Sbjct: 124 RFLPFLDLIHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRKRYADVPTWAFTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L LQNP + +SFNR NL+YEVR K +AYA+L +++ + + I+Y
Sbjct: 184 DRVRNDIIQQLGLQNPSIHIASFNRQNLYYEVRPKK--KNAYAELLELIR-DSEGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DE++ L +S YHAGL D+ R+ +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDEITFKLQHDQVSALPYHAGLTDEERTQNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF+IP+++E++YQESGRAGRD S+ L++ D + +EF++++ Q
Sbjct: 301 PDVRFVIHFDIPRNLESYYQESGRAGRDGEASRCTLFFSYADVKIIEFLINQKSEPQEQL 360
Query: 385 FSTRE 389
+ ++
Sbjct: 361 IAKQQ 365
>gi|402846704|ref|ZP_10895013.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267396|gb|EJU16791.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 539
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/390 (42%), Positives = 244/390 (62%), Gaps = 17/390 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG QF+ Q + I+++L+G+D F LMPTGGGKS+CYQ+PAL PG +++SPLIA
Sbjct: 10 LKKHFGFDQFKGNQQEIIESILAGQDTFVLMPTGGGKSLCYQLPALLMPGTAVIISPLIA 69
Query: 90 LMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV ++ E+ FL+S+ + ++ ED+ G+ +LLYV PE
Sbjct: 70 LMKNQVDAVRGFCEEDTVAHFLNSSLSRTRLEEVKEDVRQGRT--KLLYVAPESLHKKEN 127
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L++I ++ A+DEAHCIS WGHDFRP YR++ ++ + D PI+ALTATA PK
Sbjct: 128 IKLLQEIP----ISFYAVDEAHCISEWGHDFRPEYRRIRAIVTEIADRPIMALTATATPK 183
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
VQ D+M++L +++ V +SSFNRPNL Y + K ++ D+ + +N IVYC+
Sbjct: 184 VQHDIMKNLGMESAAVFQSSFNRPNLLYRIHPKTA--ESERDIVRYILSNPKKSGIVYCM 241
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
RT L+ L A GI YHAGL+ K R+ D +I R +V+VAT+AFGMGID+ D
Sbjct: 242 RRTQVMNLTEVLQANGIKALPYHAGLDAKERAENQDAFIEERAEVIVATIAFGMGIDKPD 301
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF++PKS+E +YQE+GRAGRD + YY DD ++E +K +S Q +
Sbjct: 302 VRYVIHFDMPKSLEGYYQETGRAGRDGGEGVCIAYYDHDDLEKLER-FTKGKSVADQEIA 360
Query: 387 T---RERS--SKKSISDFSQVLDVAGKRFS 411
RE + ++ SI S +L+ G+R+
Sbjct: 361 RALLRETADYAETSICRRSFLLNYFGERYE 390
>gi|189054874|dbj|BAG36927.1| unnamed protein product [Homo sapiens]
Length = 1417
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQGGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|443316688|ref|ZP_21046123.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
gi|442783715|gb|ELR93620.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
Length = 720
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/379 (44%), Positives = 243/379 (64%), Gaps = 12/379 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ QFR +Q AI+AVL+ +D +MPTGGGKS+CYQ+PAL + G+ +VV
Sbjct: 11 SLEAALKHFFGYDQFRLQQRAAIEAVLNQQDALVVMPTGGGKSLCYQLPALLRLGVTIVV 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L GIA FL SS M+ +++ Y DL G+ +LLYV PE +
Sbjct: 71 SPLIALMQDQVEALNNNGIAATFLNSSLDLMEARSREY-DLLQGR--TKLLYVAPERLLS 127
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F L ++ + L AIDEAHC+S WGHDFRP YR+L LR+ +P+LALTATA
Sbjct: 128 ENFWPFLTRLQQQVGLAGFAIDEAHCVSEWGHDFRPEYRQLHRLRSAFAGIPMLALTATA 187
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAI 262
+V++D+++ L LQ P VL +SFNRPNL+YEVR KD Y L +++ NG I
Sbjct: 188 TERVRQDIVQQLQLQKPEVLVASFNRPNLYYEVRPKD--RQTYGHLLQQVQSING--AGI 243
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R DE++ L GI+ YHAGL D R+ +I +V+VAT+AFGMGI
Sbjct: 244 IYCLSRKRVDEIALRLQNDGIAALPYHAGLPDLTRAENQRRFIRDDVRVMVATIAFGMGI 303
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++P+++E++YQESGRAGRD P+ +Y+G D + +++ + +
Sbjct: 304 NKPDVRFVVHYDLPRTLESYYQESGRAGRDGEPAHCTVYFGYADVSTVNYLIDQKPDERE 363
Query: 383 QSFSTRERSSKKSISDFSQ 401
Q+ + R + + D+++
Sbjct: 364 QNIA---RQQLRQVIDYAE 379
>gi|410981698|ref|XP_003997203.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Felis catus]
Length = 987
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 183/454 (40%), Positives = 262/454 (57%), Gaps = 37/454 (8%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPL
Sbjct: 17 LKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVISPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F
Sbjct: 77 IALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEQEKPQTKLLYITPEMAASASFQ 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+V
Sbjct: 137 PTLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQV 196
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGDT------ 259
Q+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G
Sbjct: 197 QEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLKDFCLKALGQKTAKGSL 256
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++
Sbjct: 257 SGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKPSERTLVQNDWMEEKVPVIVATIS 316
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K
Sbjct: 317 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 376
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
+K + ++ S K ++ F ++ F LG R+ + + Y
Sbjct: 377 VAKLQEKRGSKA-SDKAAVLAFDALVA-----FCEELGCRH-------------AAIAKY 417
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ P + C CD C++P L K L L
Sbjct: 418 FG-----DAPPA-CTKGCDHCRNPVALRKQLEAL 445
>gi|345798304|ref|XP_003434427.1| PREDICTED: Bloom syndrome protein [Canis lupus familiaris]
Length = 1420
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 653 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 711
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 712 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 771
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 772 VCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 831
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 832 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 892 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 951
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 952 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1011
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1012 DGNRHTRET 1020
>gi|327265015|ref|XP_003217304.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Anolis carolinensis]
Length = 1026
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 247/410 (60%), Gaps = 14/410 (3%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ FG F+ Q +A V+ G +D F MPTG GKS+CYQ+PA+ GI +VVS
Sbjct: 14 QTLKNVFGFDSFKTPLQKNATLTVVKGDKDVFICMPTGAGKSLCYQLPAVLAAGITIVVS 73
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L + L+S ++Q + I DL S P +LLY+TPE+ ++
Sbjct: 74 PLIALIQDQVDHLLSLKVRVSSLNSKISVQERKAIITDLMSDTPKTKLLYITPEMASSSS 133
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L+ + SR LL+ + +DEAHC+S WGHDFRP Y +L SLR +P+ P +ALTATA
Sbjct: 134 FQPTLEVLVSRSLLSYLIVDEAHCVSQWGHDFRPDYLRLGSLRCRIPNTPCIALTATATK 193
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSVLKANGDT-- 259
+VQ D++ SL L+ P+ K+ R NLFY+V+YK+LL D Y D C D
Sbjct: 194 RVQDDIIASLKLKLPVTTFKTPCFRSNLFYDVQYKELLTDPYENLKDFCLNSLGKHDISG 253
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C I+YC R C++++ L+ G+ AYHAGL R+SV +W+ + Q++VAT
Sbjct: 254 AYSGCGIIYCRMREVCEQVAIELNYRGLRAKAYHAGLKAAERTSVQSEWMEEKVQIIVAT 313
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NIPKSM +YQESGRAGRD PS LYY DR ++ F++
Sbjct: 314 ISFGMGVDKANVRFVAHWNIPKSMAGYYQESGRAGRDGKPSSCRLYYSRADRDQVSFLIK 373
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSR--VLGNRYWDVWP 423
K +K + T + S K ++DF V+ + + R + N + D P
Sbjct: 374 KEIAKLQEKRGTLKESDKAMMTDFDAVVAFSEELSCRHAAIANFFGDAIP 423
>gi|307152715|ref|YP_003888099.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7822]
gi|306982943|gb|ADN14824.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7822]
Length = 717
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 177/444 (39%), Positives = 257/444 (57%), Gaps = 42/444 (9%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ +L L+ +FG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 10 MYQLNSLETALKQYFGYDNFRPGQRQIIEEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 69
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLI+LM++QV L + GI FL+S+ + +++++ ++ K ++LLYV P
Sbjct: 70 LTVVVSPLISLMQDQVDALLDNGIGATFLNSSLGLSEIRSR---EMAILKNKIKLLYVAP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + F L KI ++ AIDEAHC+S WGHDFRP YR+L LR P VP+
Sbjct: 127 ERLLSEKFTPFLDKIALDVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRQRYPSVPMFG 186
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +VQ+D++ L L+NP V +SFNRPNL+Y+VR K +Y L ++
Sbjct: 187 LTATATKRVQEDIIVQLGLKNPGVHIASFNRPNLYYDVRPKQ--QRSYDQLLKYIRTQKG 244
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R DE++ L GIS YHAG+ D+AR+ +I QV+VAT+AF
Sbjct: 245 S-GIVYCLSRRNVDEIAFRLQKDGISALPYHAGMTDEARTLNQTRFIRDDAQVMVATIAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V HF++P+++E++YQESGRAGRD P+K ++ G D +++E+I+ Q
Sbjct: 304 GMGINKLDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCTIFLGFGDLKKIEYIIE--Q 361
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
N Q K + QV++ A G R ++VL Y
Sbjct: 362 KSNPQ-------EKKIAQQQLRQVINYAEGTECRR-------------------TIVLRY 395
Query: 438 YSFHLLKQIPVSLCKNSCDACKHP 461
+ C N CD C+HP
Sbjct: 396 FGERFQGN-----CDN-CDNCRHP 413
>gi|380797039|gb|AFE70395.1| Bloom syndrome protein, partial [Macaca mulatta]
Length = 786
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 20 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 78
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 79 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 138
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 139 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 198
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 199 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 258
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 259 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 318
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 319 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 378
Query: 379 SKNSQSFST 387
N + T
Sbjct: 379 DGNHHTRET 387
>gi|403418217|emb|CCM04917.1| predicted protein [Fibroporia radiculosa]
Length = 842
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 185/506 (36%), Positives = 271/506 (53%), Gaps = 50/506 (9%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVL 82
+A K+L FGH +++ KQ + ++A + G D F L PTG GKS+C+Q+PALA + G+ +
Sbjct: 39 KACWKILTTTFGHTEYKGKQKEVVEAAVQGLDVFVLAPTGMGKSLCFQVPALAARHGVTV 98
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL+ALM+NQV L+ ++ ++S + + + I EDL+SG P +RLLYV+PE
Sbjct: 99 VVSPLLALMKNQVAKLRSVYVSVAAITSETSHEDRIYILEDLNSGHPEIRLLYVSPEKFC 158
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F L ++ R LN + +DEAHCIS WGHDFR YR+L S R+ P +PI+ALTAT
Sbjct: 159 TPEFNKLLGRLDERAQLNRLVVDEAHCISEWGHDFREEYRRLGSFRDRFPYIPIMALTAT 218
Query: 203 AAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYA-----DLCSVL-- 253
A P VQ+D++ SL + + K FNR NLFYEVRY D A D S L
Sbjct: 219 ATPVVQEDIVRSLHMPRERLFKVVHPFNRANLFYEVRYLSSADPAAHMVDIFDYISNLHH 278
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK---- 309
+ + I+YC R TCD L+ YL G++ YH G+ L +W
Sbjct: 279 RRGRPSSGIIYCRTRATCDNLAHYLRGKGLNARPYHRGIGSIVLDRTLAEWERGGSGQGG 338
Query: 310 -QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
VV AT+AFGMGID+ DVR + H+++PKS E +YQE+GR GRD LPSK +L+Y +D
Sbjct: 339 IDVVCATIAFGMGIDKADVRYILHYDLPKSFEGYYQETGRGGRDGLPSKCILFYSREDVI 398
Query: 369 RMEFILSKNQSKNSQSFSTRE--RSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVL 425
R+ +S + +K + + E S++++ + +++ A G R +
Sbjct: 399 RVRNWVSGSHAKRLERAESLEGPMPSQRAVDSLTALINFAEGVNVCRHI----------- 447
Query: 426 PIGWFLSLVLLYYSFHLLKQIPV---SLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFS 482
+ Y+ H+ P C CD CK P+ + +L+ L + +
Sbjct: 448 -------TICRYFGEHIDTNSPEVAKGYCDGMCDVCKSPDKTKRRKSDLSPEALVSSQIA 500
Query: 483 QIFISSQDMTDGGQYSEFWNRDDEAS 508
+ Q N+DDE S
Sbjct: 501 VL-----------QRQAGSNKDDEGS 515
>gi|301768981|ref|XP_002919891.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Ailuropoda
melanoleuca]
Length = 985
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 184/454 (40%), Positives = 260/454 (57%), Gaps = 37/454 (8%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+SPL
Sbjct: 17 LKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F
Sbjct: 77 IALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAASASFQ 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+V
Sbjct: 137 PTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQV 196
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGDT------ 259
Q+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G
Sbjct: 197 QEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLL 256
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYC R C++L+ LS G+S AYHAGL R+ V ++W+ + V+VAT++
Sbjct: 257 SGCGIVYCRTREACEQLATELSHRGVSAKAYHAGLKAPERTLVQNEWMEEKVPVIVATIS 316
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K
Sbjct: 317 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 376
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
+K + + S K ++ F ++ F LG R+ + + Y
Sbjct: 377 VAKLQEKRGNKA-SDKAAVLAFDALVT-----FCEGLGCRH-------------AAIAKY 417
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ P + C CD C+ P L K L L
Sbjct: 418 FG-----DAPPA-CTKGCDHCRDPGALRKQLDAL 445
>gi|221044892|dbj|BAH14123.1| unnamed protein product [Homo sapiens]
Length = 1018
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRRLEAL 447
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 237/365 (64%), Gaps = 7/365 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNAYQVRSR-EEAILNGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 124 RFLPFLDLVKEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHLASFNRQNLYYEVRPKS--KQAYAELLELIRDN-EGSTIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD S+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVVHFDIPRNLESYYQESGRAGRDGEASRCTIFFSFGDIKTIEWSIEQKTDPQEQL 360
Query: 385 FSTRE 389
+ ++
Sbjct: 361 IAKQQ 365
>gi|427713763|ref|YP_007062387.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427377892|gb|AFY61844.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 730
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 247/390 (63%), Gaps = 4/390 (1%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR Q D I A L+ +D ++PTGGGKS+C+Q+PAL K GI LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM +QV+ L++ GIA FL+ST + + +G+ ++LLYV PE + F
Sbjct: 64 LIALMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGE--VKLLYVAPERLVSDSF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L+ IH ++ + +DEAHC+S WGHDFRP YR+LS LR P +P++ALTATA +
Sbjct: 122 TALLETIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPTIPVIALTATATHR 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+ E L L+ P V +SFNRPNL+YEV K + ++L +K + I+YC+
Sbjct: 182 VRTDITEQLSLKKPFVHVASFNRPNLYYEVIEKSRGKVSLSELTGYIKET-EGSGIIYCM 240
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++L++ L+ GIS YHAGL+++ R+ +I Q++VATVAFGMGI++ D
Sbjct: 241 SRKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVAFGMGINKPD 300
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQSF 385
VR V H+++P+++E +YQESGRAGRD P++ L++ D ++ + FI +K + ++
Sbjct: 301 VRFVIHYDLPQTIEGYYQESGRAGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNEPL 360
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSRVLG 415
+R +++ + + D R + +LG
Sbjct: 361 EDEQRIARQQLRQIAAYADSTLCRRTTLLG 390
>gi|365875470|ref|ZP_09414998.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442588734|ref|ZP_21007544.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
gi|365756729|gb|EHM98640.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442561492|gb|ELR78717.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
Length = 735
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG F+ Q I ++L G D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFTTFKGYQEQIISSLLEGSDVFVLMPTGGGKSLCYQLPALMSEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + E+G+A SS Q KT + +D+ +G+ +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSEEGVAHVLNSSLNKTQTKT-VMDDIRNGRT--KLLYVAPESLIKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ K++ ++ AIDEAHCIS WGHDFRP YR L S+ + + DVP++ALTATA P
Sbjct: 129 YIDFFKEVP----ISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNLFYEVR K +D ++ +KA IVYC
Sbjct: 185 KVQDDIQKTLGMTNALVYKESFNRPNLFYEVRPKVNID---KEIVKFIKAQNGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L G++ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
DVR V H++IPKS+E++YQE+GRAGRD + +Y D ++E L++
Sbjct: 302 DVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQ 352
>gi|281350039|gb|EFB25623.1| hypothetical protein PANDA_008576 [Ailuropoda melanoleuca]
Length = 979
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/454 (40%), Positives = 260/454 (57%), Gaps = 37/454 (8%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+SPL
Sbjct: 11 LKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPL 70
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F
Sbjct: 71 IALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAASASFQ 130
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+V
Sbjct: 131 PTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQV 190
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGDT------ 259
Q+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G
Sbjct: 191 QEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLL 250
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYC R C++L+ LS G+S AYHAGL R+ V ++W+ + V+VAT++
Sbjct: 251 SGCGIVYCRTREACEQLATELSHRGVSAKAYHAGLKAPERTLVQNEWMEEKVPVIVATIS 310
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K
Sbjct: 311 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 370
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
+K + + S K ++ F ++ F LG R+ + + Y
Sbjct: 371 VAKLQEKRGNKA-SDKAAVLAFDALVT-----FCEGLGCRH-------------AAIAKY 411
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ P + C CD C+ P L K L L
Sbjct: 412 FG-----DAPPA-CTKGCDHCRDPGALRKQLDAL 439
>gi|219518767|gb|AAI43281.1| BLM protein [Homo sapiens]
Length = 1042
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 276 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 334
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 335 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 394
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 395 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 454
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 455 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 515 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 574
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 575 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 634
Query: 379 SKNSQSFST 387
N + T
Sbjct: 635 DGNHHTRET 643
>gi|30692489|ref|NP_174421.2| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|75334308|sp|Q9FT73.1|MED34_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
34; AltName: Full=ATP-dependent DNA helicase Q-like 2;
AltName: Full=RecQ-like protein 2; Short=AtRecQ2;
Short=AtRecQl2
gi|11121445|emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana]
gi|332193225|gb|AEE31346.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 705
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 223/334 (66%), Gaps = 6/334 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + SS NRPNLFY VR K L+ D A+ +N ++ IVYC R
Sbjct: 265 EMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ +L++
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFF 417
>gi|301768849|ref|XP_002919837.1| PREDICTED: Bloom syndrome protein-like [Ailuropoda melanoleuca]
gi|281350343|gb|EFB25927.1| hypothetical protein PANDA_008500 [Ailuropoda melanoleuca]
Length = 1423
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 658 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 716
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 717 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 776
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 777 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 836
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 837 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 896
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 897 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 956
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 957 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1016
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1017 EGNHHTRET 1025
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 221/342 (64%), Gaps = 9/342 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG++QFR Q IQ +L G++ F +MPTG GKS+CYQ+PAL G+ +V+SPLIA
Sbjct: 17 LKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLPALVSDGLTIVISPLIA 76
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST T T++ D G +L+LLY+ PE +
Sbjct: 77 LMKNQVDQLTAFGINAQFLNSTLTKAEMTRVKTDALDG--TLKLLYIAPESLTKEDNLDF 134
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK++ ++ VAIDEAHCIS WGHDFRP YR++ + + ++PI+ALTATA PKVQ+
Sbjct: 135 LKRVK----ISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIGNLPIIALTATATPKVQQ 190
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ ++L ++ KSSFNR NL+YE+R K D L ++ N IVYCL R
Sbjct: 191 DIRKNLQMEEAETFKSSFNRKNLYYEIRPKK---DVKKQLIRYIRNNKGKSGIVYCLSRK 247
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T +E++ L+ + YHAGL+ R + D +++ V+VAT+AFGMGID+ DVR
Sbjct: 248 TVEEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVIVATIAFGMGIDKPDVRF 307
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V H+++PKS+E +YQE+GRAGRD L L++Y DD +++E
Sbjct: 308 VIHYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLE 349
>gi|428170384|gb|EKX39309.1| hypothetical protein GUITHDRAFT_76434 [Guillardia theta CCMP2712]
Length = 434
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 235/380 (61%), Gaps = 31/380 (8%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSP 86
++L FG R Q I VL G+D F +MPTG GKS+CYQ+PA+ A+ + LVV+P
Sbjct: 35 RILHQVFGFTSLRGHQKRVISEVLDGKDAFAVMPTGAGKSLCYQLPAVYAESKVTLVVTP 94
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-----------LRLLY 135
L+ALM QV L+ KG+ + S+Q+ + + ++ DL GKPS +RLLY
Sbjct: 95 LLALMLGQVKSLQSKGVLASAIYSSQSKRDRERVINDL-LGKPSPDSEPLTFPPMMRLLY 153
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
VTPEL T F L ++ G +NL+AIDEAHC+S WGH+FRP +RKL S+ P VP
Sbjct: 154 VTPELLCTSNFQQDLSILYDGGYINLIAIDEAHCVSEWGHEFRPCFRKLGSIHQRFPSVP 213
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL---DDAYADLCSV 252
LALTATA +V++DV+ L ++ + SF+RPN+ Y+VRYKDL+ + + D+ S
Sbjct: 214 WLALTATATEQVRRDVVNILKIKVDKIFMQSFDRPNIRYQVRYKDLIGEDEQVFEDIASF 273
Query: 253 LKAN------GDTCA---------IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+ + G+ A I+YC + +CD L+ LSA G+ AYHAGL + R
Sbjct: 274 VGESLNSLPRGEPVAAGLQYACSGIIYCHTKASCDALAQQLSAIGVKAKAYHAGLRPRER 333
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V D+W+ +VV AT+AFGMGID+KDVR V H ++PKS+EA+YQE+GRAGRD S+
Sbjct: 334 MQVQDEWMEGVTKVVCATIAFGMGIDKKDVRFVIHQSMPKSLEAYYQETGRAGRDGGESE 393
Query: 358 SLLYYGMDDRRRMEFILSKN 377
+L+Y+ DD F+L K+
Sbjct: 394 ALMYFSEDDANLHRFLLRKS 413
>gi|383450034|ref|YP_005356755.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
gi|380501656|emb|CCG52698.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
Length = 731
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 244/398 (61%), Gaps = 17/398 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG QF+ Q + +++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LYKELKKYFGFNQFKGLQEQVVTSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A L+S+ T ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLGSEMGVA-HVLNSSLTKTEINQVKADIVSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L ++ L+ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LTA
Sbjct: 125 TKEEYIQFLNEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDVPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V K+SFNRPNL+YEVR K + AD+ +K +
Sbjct: 181 TATPKVQEDILKNLDMPDANVFKASFNRPNLYYEVRPK--TKNVEADIIRFIKQHKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAE 358
Query: 381 NSQSFSTRERS---SKKSISDFSQVLDVAGKRFSRVLG 415
++ + ++ S+S +L G+ F V G
Sbjct: 359 QEIGYALLQEVVAYAETSMSRRKYLLHYFGEEFDEVNG 396
>gi|410960520|ref|XP_003986837.1| PREDICTED: Bloom syndrome protein [Felis catus]
Length = 1428
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 662 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 721 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 781 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 841 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 901 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 960
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 961 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1020
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1021 DGNRHTRET 1029
>gi|148342513|gb|ABQ59039.1| RECQL5 protein [Homo sapiens]
Length = 991
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRRLEAL 447
>gi|148612816|ref|NP_004250.4| ATP-dependent DNA helicase Q5 isoform 1 [Homo sapiens]
gi|22654276|sp|O94762.2|RECQ5_HUMAN RecName: Full=ATP-dependent DNA helicase Q5; AltName: Full=DNA
helicase, RecQ-like type 5; Short=RecQ5; AltName:
Full=RecQ protein-like 5
gi|7959113|dbj|BAA95953.1| DNA helicase recQ5 beta [Homo sapiens]
gi|119609695|gb|EAW89289.1| RecQ protein-like 5, isoform CRA_a [Homo sapiens]
gi|119609697|gb|EAW89291.1| RecQ protein-like 5, isoform CRA_a [Homo sapiens]
Length = 991
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRRLEAL 447
>gi|428201759|ref|YP_007080348.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
gi|427979191|gb|AFY76791.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
Length = 708
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 244/390 (62%), Gaps = 10/390 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVSPLIA
Sbjct: 11 LKHFFGYEHFRPGQRKIVEEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM+++V L++ GI FL+S+ T +V+++ LD GK ++LLYV PE + F +
Sbjct: 71 LMQDRVDALQDNGIGATFLNSSLTFPEVRSRETAILD-GK--IKLLYVAPERLLSERFRN 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L ++ + AIDEAHC+S WGHDFRP YR+L LR P VP+ ALTATA +VQ
Sbjct: 128 FLDLAATKISITAFAIDEAHCVSEWGHDFRPEYRQLIQLRQRYPHVPMFALTATATKRVQ 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+++ L L+ P + +SFNRPN++YEV+ K+ +Y L +++ + IVYCL R
Sbjct: 188 EDIIQQLGLRQPGIHLASFNRPNIYYEVQPKE--RRSYNQLLKLIRTQQGS-GIVYCLSR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE++ L GIS YHAG+ D+AR+ +I +V+VAT+AFGMGID+ DVR
Sbjct: 245 RNVDEIAFRLQKDGISTVPYHAGITDEARTLNQTRFIRDDVKVIVATIAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++P+++E++YQESGRAGRD P+ L+ + D +R+E+I+ + Q +
Sbjct: 305 FVIHYDLPRNLESYYQESGRAGRDGEPANCTLFLSLGDFKRIEYIIDQKSDPQEQRIA-- 362
Query: 389 ERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
R + + ++++ + R G R+
Sbjct: 363 -RQQLRQVINYAEGTECRRTIILRYFGERF 391
>gi|195396248|ref|XP_002056744.1| GJ10048 [Drosophila virilis]
gi|194143453|gb|EDW59856.1| GJ10048 [Drosophila virilis]
Length = 1324
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 230/359 (64%), Gaps = 9/359 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 556 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 615
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S QT+ IY DL+ P ++LLYVTPE ++++
Sbjct: 616 PLKSLIFDQVNKLASLDICAKSMSGEQTLDEVMTIYRDLECHPPLVKLLYVTPEKISSSA 675
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++ + ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 676 RFQDTLDQLSANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPSMALTATAT 735
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V++D+++ L L + SSFNR NL Y+V K LDD + S ++ T +
Sbjct: 736 PRVRQDILQQLNLTHCKWFLSSFNRSNLRYQVLPKKGASTLDD----IRSFIQTRAVTAS 791
Query: 262 -IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE++ + A GI AYHAGL D AR S DWI+++ +V+ AT+AFGM
Sbjct: 792 GIIYCLSRKECDEVAQKMCAVGIRAVAYHAGLTDAARESRQKDWITNKVRVICATIAFGM 851
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ +++
Sbjct: 852 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMLRLKKMMDADRA 910
>gi|357155794|ref|XP_003577240.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Brachypodium
distachyon]
Length = 599
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 226/365 (61%), Gaps = 6/365 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A A L+ RDCF LMPTGGGKS+CYQ+PA PG+ +VV PL++L+++
Sbjct: 193 FGNKSFRPLQYEACSAALNNRDCFILMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIQD 252
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
QV+ L K GI FL+S QT + + ++L +G PS +LLYVTPE + FM L+
Sbjct: 253 QVVALTFKFGIQASFLNSQQTSSQASVVMQELRNGTPSFKLLYVTPERMVGNYSFMEILR 312
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KD+
Sbjct: 313 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRALGCLKQNFPRVPIMALTATATEAVRKDI 372
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ +L + N LVLK SF+R NL Y V K L +LK + IVYCL +
Sbjct: 373 LSTLRVPNALVLKRSFDRLNLNYMVIGK--TKTPQMQLGELLKERFMNMSGIVYCLSKNE 430
Query: 271 CDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C + + +L I CA YHAGL + R+SV + W +V+ AT+AFGMGID+ DVR
Sbjct: 431 CADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHRGEVKVICATIAFGMGIDKPDVRF 490
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L + S++F
Sbjct: 491 VIHNTLSKSIESYYQESGRAGRDDLPAHCVVLYQKKDFSRIVCMLRNGDNFKSETFKVAM 550
Query: 390 RSSKK 394
+KK
Sbjct: 551 DQAKK 555
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/448 (39%), Positives = 263/448 (58%), Gaps = 33/448 (7%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL G+ +V
Sbjct: 13 DTLEDALKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQLPALLNSGVSVV 72
Query: 84 VSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L++ G+ FL SS +V+++ E LD ++LLYV PE
Sbjct: 73 VSPLIALMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEILDG---RIKLLYVAPERLL 129
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L + + L+ IDEAHC+S WGHDFRP YR+L +R P+VP++ALTAT
Sbjct: 130 NEQFLLWLNDVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFPEVPVMALTAT 189
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V++D+ E L L+ P V +SFNRPNL+YEVR K ++Y +L ++ +C I
Sbjct: 190 ATDRVRQDMGEQLALRQPYVHIASFNRPNLYYEVRPKG--KNSYDELLQKIRHVEGSC-I 246
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +EL+ L GI YHAGL+D R+ +I +V+VAT+AFGMGI
Sbjct: 247 VYCLSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATIAFGMGI 306
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVRLV H+++P+++EA+YQESGRAGRD ++ LL+YG D + +++I+ +Q +
Sbjct: 307 NKPDVRLVMHYDLPRNIEAYYQESGRAGRDGETAQCLLFYGPGDIKSLDWII--DQKVHP 364
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHL 442
+ E+ + + QV+D A R ++ L Y+
Sbjct: 365 VTGEPLEQEQRIARQQLRQVIDYAESTVCR------------------RTIQLSYFG--- 403
Query: 443 LKQIPVSLCKNSCDACKHPNLLAKYLGE 470
++ P + C+N CD C HP L + E
Sbjct: 404 -EEFPGN-CQN-CDNCLHPKPLEDWTIE 428
>gi|73965025|ref|XP_540436.2| PREDICTED: ATP-dependent DNA helicase Q5 [Canis lupus familiaris]
Length = 989
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/465 (40%), Positives = 263/465 (56%), Gaps = 37/465 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+P F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LK
Sbjct: 185 IALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 255 ANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 245 ALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWME 304
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 305 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 364
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLP 426
R ++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 365 RDQVSFLIRKEVAKLQEKRGNKA-SDKAAILAFDALVT-----FCEELGCRH-------- 410
Query: 427 IGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C+ P L K L L
Sbjct: 411 -----AAIAKYFG-----DAPPA-CTKGCDHCRDPAALRKRLDAL 444
>gi|302811147|ref|XP_002987263.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
gi|300144898|gb|EFJ11578.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
Length = 711
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/349 (46%), Positives = 227/349 (65%), Gaps = 5/349 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + FR Q + + A++S ++ +M GGGKS+CYQ+PAL +PGI LVVSPL++L+++
Sbjct: 73 FGISTFRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQD 132
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL G++ L+ST + + + +IY L+ G +LR+LYVTPE A + FMSKL+K
Sbjct: 133 QVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEK 192
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA +VQ+D+
Sbjct: 193 CNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQ 252
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERT 269
E L + SS NRPNLFYEVR K + D D+ +K + IVYC R
Sbjct: 253 EMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRK 312
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L IS A YHA ++ R++V W S++ QV+V TVAFGMGI++ DVR
Sbjct: 313 ECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRF 372
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKN 377
V H + KS+E +YQESGRAGRD LPS+ +LY+ D R + S+N
Sbjct: 373 VIHHTLSKSLETYYQESGRAGRDGLPSRCVLYFRPADVPRQSCMVFSEN 421
>gi|444727835|gb|ELW68313.1| ATP-dependent DNA helicase Q5 [Tupaia chinensis]
Length = 973
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/464 (39%), Positives = 263/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERQVRSTLKKVFGFDSFKTPLQERATMAVVRGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVPVSSLNSKLSAQERKELLCDLEQDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGVLRSRLGHTPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLRDFCLK 248
Query: 255 A-------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G+S AYHAGL R+ V +W+
Sbjct: 249 ALGQKADEGGSGCGIVYCRTREACEQLAIELSCRGVSAKAYHAGLKAAERTLVQSEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
R V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 RVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K ++ F ++ F LG R+
Sbjct: 369 DQVSFLIKKEIAKLQEKRGNKA-SDKATLLAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + LG L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPAAVRRQLGAL 447
>gi|396081744|gb|AFN83359.1| ATP-dependent DNA helicase [Encephalitozoon romaleae SJ-2008]
Length = 765
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 177/450 (39%), Positives = 258/450 (57%), Gaps = 35/450 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 228 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 287
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +K I ++S + ++ ++E L S + ++ YVTPEL A G F
Sbjct: 288 LVQDQIRNLLQKDILALPINSNLSRNERSLVFEALRSDELICKIFYVTPELIAKSGHFHD 347
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ ++ RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 348 VVSELVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRIRYPSVPIIALTATATKKVE 407
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 408 LDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 465
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 466 KKECEMISDKLKKY-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 524
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 525 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQ--KQ 582
Query: 388 RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447
R+R +++ F + + R +VLG H ++
Sbjct: 583 RQREDLEAVIQFCE--NKTDCRRMQVLG-------------------------HFGEKFD 615
Query: 448 VSLCKNSCDACKHPNLLAK-YLGELTSAVL 476
+C+ +CD C+ ++ K Y E +L
Sbjct: 616 PQMCRKTCDNCRREAMVKKDYTKEARDLIL 645
>gi|149690733|ref|XP_001502766.1| PREDICTED: Bloom syndrome protein [Equus caballus]
Length = 1421
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 227/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 657 HTKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 715
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 716 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 775
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ ++ L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 776 VCASNRLITTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 835
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + +P V SFNR NL Y V K A+ L + K +
Sbjct: 836 TATANPRVQKDILTQLKILSPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 895
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR +V WI+ QV+ AT+AF
Sbjct: 896 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDAVQHKWINQDGCQVICATIAF 955
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 956 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1015
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1016 DGNHHTKET 1024
>gi|108864717|gb|ABA95535.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 766
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 223/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR 424
>gi|242071927|ref|XP_002451240.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
gi|241937083|gb|EES10228.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
Length = 624
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/373 (44%), Positives = 229/373 (61%), Gaps = 22/373 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A ++ +DCF LMPTGGGKS+CYQ+PA PG+ +VVSPL++L+++
Sbjct: 220 FGNKSFRPLQYEACRAAMNNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 279
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K I FL+S QT + + ++L G PS +LLYVTPE + A FM L+
Sbjct: 280 QIVALTYKFAIPAAFLNSQQTPAQASAVIQELRYGTPSFKLLYVTPERIAANYSFMEMLR 339
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KDV
Sbjct: 340 GLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATESVRKDV 399
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N ++LK SF+R NL YEV K DLL + + + I
Sbjct: 400 LSALRIPNAVILKRSFDRLNLNYEVIGKTKTPQKQLGDLLKERFM----------NKSGI 449
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHAGL + R+SV + W S +V+ AT+AFGMG
Sbjct: 450 VYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHSGEVKVICATIAFGMG 509
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L +
Sbjct: 510 IDKPDVRFVIHNTMSKSIESYYQESGRAGRDDLPAHCIVLYQKKDFSRIVCMLRNADNFK 569
Query: 382 SQSFSTRERSSKK 394
S+SF +KK
Sbjct: 570 SESFKVAMEQAKK 582
>gi|326479495|gb|EGE03505.1| RecQ family helicase MusN [Trichophyton equinum CBS 127.97]
Length = 1531
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/409 (41%), Positives = 247/409 (60%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 666 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 725
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 726 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 785
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R P VP++ALTAT
Sbjct: 786 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYPGVPVMALTAT 845
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 846 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 905
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 906 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 965
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+
Sbjct: 966 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNKET 1025
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+ R+R + ++ F +Q+L ++F R NR D
Sbjct: 1026 TYEQ-KQRQRQMLRHVTQFCENITDCRRAQILAYFDEKFKREDCNRTCD 1073
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/396 (43%), Positives = 255/396 (64%), Gaps = 21/396 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+++FG+ FR Q + I+ L +D +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 11 LKYYFGYDNFRLGQREIIEEALQNKDLMVVMPTGGGKSLCFQLPALMKKGVTIVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L++ GIA FL SS + QV+++ L+ GK ++L+YV PE + F+
Sbjct: 71 LMQDQVETLRKNGIAATFLNSSLNSYQVRSREQAILE-GK--VKLVYVAPERLVSERFLP 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L ++ + + AIDEAHC+S WGHDFRP YR+L +LR +P+ ALTATA +V+
Sbjct: 128 FLDLVNHQVGIAGFAIDEAHCVSEWGHDFRPEYRQLITLRQRYSGIPLFALTATATDRVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++E L LQ P + +SFNR NL+YEVR K YA++ +++ + + I+YCL R
Sbjct: 188 ADIIEQLGLQEPSIHIASFNRQNLYYEVRPKT--KTVYAEVLELIRES-EASTIIYCLTR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DEL+ L IS AYHAGL+D+ R++ +I +V+VATVAFGMGID+ DVR
Sbjct: 245 KQVDELTFKLQHDKISALAYHAGLSDEERTNNQTRFIRDDVRVMVATVAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
LV H+N+P+++E +YQESGRAGRD PS+ +++G+ D + +E+ S NQ +SQ
Sbjct: 305 LVIHYNLPRNIEGYYQESGRAGRDGEPSRCTMFFGVGDIKTIEW--SINQKTDSQEQLIA 362
Query: 389 ERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
++ ++ I DF++ D G+RF LGN
Sbjct: 363 KQQLRQVI-DFAEGTDCRRTIQLGYFGERF---LGN 394
>gi|77552739|gb|ABA95536.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 707
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 223/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR 424
>gi|410907219|ref|XP_003967089.1| PREDICTED: Bloom syndrome protein homolog [Takifugu rubripes]
Length = 1392
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 228/373 (61%), Gaps = 8/373 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H + ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA PG
Sbjct: 625 FHYSQEMMKIFHKRFGLHQFRYNQLEAINATLQGEDTFVLMPTGGGKSLCYQLPACVSPG 684
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPL +L+ +Q+ L I LS + +IY L +P ++LLYVTPE
Sbjct: 685 VTVVISPLKSLIVDQIQKLTTLDIPATSLSGDLGEREAGRIYMQLSRKEPIVKLLYVTPE 744
Query: 140 -LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
++A+ +S L+ ++ RGLL IDEAHC+S WGHDFRP Y+KL LR P VP++A
Sbjct: 745 KVSASNKLISALQNLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLHELRKKFPQVPMMA 804
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA 255
LTATA P+VQKD+ L + P V SFNR NL Y V + K + +D + + K
Sbjct: 805 LTATATPRVQKDIHNQLNMNRPQVFTMSFNRTNLKYAVLPKKPKKVDEDC---ISWIKKH 861
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
I+YCL R CD ++ L G+ +YHAGL+D R V WI+ QV+ A
Sbjct: 862 YPRDSGIIYCLSRNDCDAMAESLQRAGLLALSYHAGLSDGNREYVQTKWINQDGCQVICA 921
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ I+
Sbjct: 922 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCILFYSYADVHRIKRII 981
Query: 375 SKNQSKNSQSFST 387
S ++ +SQ+ +T
Sbjct: 982 SMDREGDSQTKAT 994
>gi|50307299|ref|XP_453628.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642762|emb|CAH00724.1| KLLA0D12694p [Kluyveromyces lactis]
Length = 1367
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 229/356 (64%), Gaps = 10/356 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR FG FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +VVS
Sbjct: 587 LRHVFGLDSFRPNQLEAVNATLQGKDAFVLMPTGGGKSLCYQLPAIVKSGRTSGTTIVVS 646
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L K I SS T + + + +G L L+Y++PE+ A+
Sbjct: 647 PLISLMQDQVEHLLAKDIKASMFSSKGTAEQRRMTFNLFMNGL--LELVYISPEMIKASV 704
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ K++ G L + +DEAHC+S+WGHDFRP Y++LS + PD+P++ALTATA+
Sbjct: 705 QCKKAISKLYEHGKLARIVVDEAHCVSNWGHDFRPDYKELSFFKQEYPDIPMIALTATAS 764
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ D++ +L L NP+ LK SFNR NLFY+V K+ ++ +C +++ + I+
Sbjct: 765 EQVRMDIIHNLQLNNPVFLKQSFNRTNLFYQVLKKE--KNSIFQMCDMIRTKFKNQTGII 822
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ SA + G+ CA YHAG++ R V DW + R QV+ ATVAFGMGID
Sbjct: 823 YCHSKNSCEQTSALMQKNGVKCAFYHAGMDPDERFQVQQDWQADRVQVICATVAFGMGID 882
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V HF +P+++E +YQE+GRAGRD S+ ++YY D R ++ ++ K+++
Sbjct: 883 KPDVRFVFHFTVPRTLEGYYQETGRAGRDGNFSQCIMYYSFRDVRTIQTMIQKDKN 938
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 253/401 (63%), Gaps = 18/401 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L + L++ FG+ FR Q IQ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 1 MFQSNSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV L + GI FL SS ++ +V+++ + + GK ++LLYV P
Sbjct: 61 LTVVVSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSR-EQAIIKGK--IKLLYVAP 117
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F L I + ++ AIDEAHC+S WGHDFRP YR+L LR P VP+LA
Sbjct: 118 ERLLNDKFTPFLDFIAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D++ L L+ P + +SFNRPNL Y+V++K+ +Y L S ++
Sbjct: 178 LTATATKRVREDIIHQLELKQPGIHITSFNRPNLDYDVQFKE--RRSYNKLLSYIRQQKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R + D+++ L GI YHAG+ D+AR+ + +I QV+VAT+AF
Sbjct: 236 S-GIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H+++P+++E +YQESGRAGRD P++ L++ + D +++E+++ +
Sbjct: 295 GMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKS 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQ--------VLDVAGKRFS 411
+ Q + R + + D+++ VL G+RF+
Sbjct: 355 TPQEQKIA---RQQLRQVVDYAEGTECRRTIVLRYFGERFA 392
>gi|338711535|ref|XP_001492159.3| PREDICTED: ATP-dependent DNA helicase Q5, partial [Equus caballus]
Length = 955
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 266/471 (56%), Gaps = 40/471 (8%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THLSSPFDPGRRVRNTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA--- 247
P +ALTATA P+V++DV +L L+ P+ + K+ R NLFY+V++K+LL D Y
Sbjct: 183 AHAPCVALTATATPQVREDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELLSDPYGNLR 242
Query: 248 DLCSVLKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
D C LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V
Sbjct: 243 DFC--LKALGQKADKGLSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKASERTLV 300
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
++W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS L
Sbjct: 301 QNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRL 360
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWD 420
YY +DR ++ F++ K +K + + S K ++ F ++ F LG R+
Sbjct: 361 YYSRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVVAFDALVS-----FCEELGCRH-- 412
Query: 421 VWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + K L L
Sbjct: 413 -----------AAIAKYFG-----DAPPA-CTKGCDHCQNPAAVRKQLSAL 446
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 253/401 (63%), Gaps = 18/401 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L + L++ FG+ FR Q IQ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 1 MFQSNSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV L + GI FL SS ++ +V+++ + + GK ++LLYV P
Sbjct: 61 LTVVVSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSR-EQAIIKGK--IKLLYVAP 117
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F L + + ++ AIDEAHC+S WGHDFRP YR+L LR P VP+LA
Sbjct: 118 ERLLNDKFTPFLDFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D++ L L+ P + +SFNRPNL Y+V++K+ +Y L S ++
Sbjct: 178 LTATATKRVREDIIHQLALKQPGIHITSFNRPNLDYDVQFKE--RRSYNKLLSYIRQQKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R + D+++ L GI YHAG+ D+AR+ + +I QV+VAT+AF
Sbjct: 236 S-GIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H+++P+++E +YQESGRAGRD P++ L++ + D +++E+++ +
Sbjct: 295 GMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKS 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQ--------VLDVAGKRFS 411
+ Q + R + + D+++ VL G+RF+
Sbjct: 355 TPQEQKIA---RQQLRQVVDYAEGTECRRTIVLRYFGERFA 392
>gi|18485510|ref|NP_569721.1| ATP-dependent DNA helicase Q5 [Mus musculus]
gi|17511226|dbj|BAB79232.1| RecQ helicase protein-like 5 beta [Mus musculus]
gi|148702584|gb|EDL34531.1| RecQ protein-like 5, isoform CRA_b [Mus musculus]
gi|162317946|gb|AAI56759.1| RecQ protein-like 5 [synthetic construct]
Length = 982
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/465 (39%), Positives = 267/465 (57%), Gaps = 37/465 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVKGAEDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 ASGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLVSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLK 248
Query: 255 A------NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A NG + C IVYC R C++L+ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKAENGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASDRTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 368
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLP 426
R ++ F++ K +K + + S K ++ F ++ F +G R+
Sbjct: 369 RDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALVT-----FCEEVGCRH-------- 414
Query: 427 IGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + K L L
Sbjct: 415 -----AAIAKYFG-----DAPPA-CAKGCDYCQNPAAITKKLDAL 448
>gi|410637731|ref|ZP_11348302.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142699|dbj|GAC15507.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 609
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 239/391 (61%), Gaps = 14/391 (3%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
S+ +K P+ ++L+ FG++ FRD Q I+ VLS RD LMPTGGGKS+C
Sbjct: 2 SSPTLEKPLPIENSTKPAEVLKEVFGYSHFRDGQQQVIEQVLSQRDALVLMPTGGGKSLC 61
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQIPAL PGI +VVSPLI+LM++QV L G+A F++S+ + IY L GK
Sbjct: 62 YQIPALILPGITIVVSPLISLMKDQVDALTASGVAATFINSSIPREQLLNIYRQLQDGK- 120
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
+LLYV PE F+ +L ++ L+L+A+DEAHC+S WGHDFR YR L L+
Sbjct: 121 -FKLLYVAPERLMQLEFIDRLHTLN----LSLIAVDEAHCVSHWGHDFRQDYRLLGQLKT 175
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 247
+ P++P++ LTATA + D+ + L LQ P V +SSF+RPN+ Y + +YK A
Sbjct: 176 HFPNIPVMGLTATADIATRADITQQLNLQTPYVFRSSFDRPNIRYNLLSKYK-----AVD 230
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
L +K + IVYC R DELS L+ GI+ A YHAGL + R + D+I
Sbjct: 231 QLIHYVKGQ-EGSGIVYCNSRAKVDELSFKLAKQGINSAGYHAGLEPEIREKIQRDFIQD 289
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
V+VATVAFGMGI++ +VR V HF++P+S+E++YQE+GRAGRD +P+++LL Y D
Sbjct: 290 NVDVIVATVAFGMGINKSNVRYVVHFDLPRSIESYYQETGRAGRDGMPAEALLLYDEKDA 349
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISD 398
R+ ++ ++ ++ ++ ++ +D
Sbjct: 350 ARIRQWIAMGENTERHDVELQKFAAMEAFAD 380
>gi|291514588|emb|CBK63798.1| ATP-dependent DNA helicase RecQ [Alistipes shahii WAL 8301]
Length = 730
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 228/356 (64%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G+D F LMPTGGGKS+CYQ+PA+ G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGKDTFVLMPTGGGKSLCYQLPAMLMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ E GIA FL+S+ ++ +D+ GK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSAESGIA-HFLNSSLNKTAVAQVRQDVLDGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L+KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLRKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGSAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVDH---DIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ DD++ R +V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDASTRAANQDDFLMERVEVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE 348
>gi|261854926|ref|YP_003262209.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
gi|261835395|gb|ACX95162.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
Length = 609
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/366 (44%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PLH +L FG+ FR Q + I V+SGRD LMPTGGGKS+CYQ+PALA
Sbjct: 7 SSPLH-------ILNTVFGYPAFRGPQAEVIDTVMSGRDALVLMPTGGGKSLCYQVPALA 59
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G +VVSPLIALM++QV L++ G+A FL+STQT + + + L +G +L LLYV
Sbjct: 60 LSGTAIVVSPLIALMQDQVAALRQAGVAAAFLNSTQTGEEAQLVRKQLRAG--TLDLLYV 117
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE +S L+ +NL+AIDEAHC+S WGHDFRP Y +L L Y PD+P
Sbjct: 118 APERLLNADTLSLLRDAS----INLIAIDEAHCVSQWGHDFRPEYIRLGELGQYFPDIPR 173
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA Q++++ L L N V SSF+RPN+ Y + A L + +
Sbjct: 174 IALTATADGTTQQEILYRLGLNNARVFISSFDRPNIRYHIAQNHAGSARDALLRFIRDNH 233
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ IVYCL R +E++A+LS G++ AYHAGL R L ++ +VVAT+
Sbjct: 234 ANEAGIVYCLSRKRVEEIAAWLSDQGLTALAYHAGLPATQREQTLRRFLDEDGVIVVATI 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H N+PKS+EA+YQE+GRAGRD LP+++ + YG+ D + ++S+
Sbjct: 294 AFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMRYGLQDVITLRQMMSE 353
Query: 377 NQSKNS 382
+ + +
Sbjct: 354 SNADEA 359
>gi|430812018|emb|CCJ30545.1| unnamed protein product [Pneumocystis jirovecii]
Length = 704
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 255/464 (54%), Gaps = 52/464 (11%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLI 88
LR FG FR Q +AI+ L G D F + PTG GKS+CYQ+PA+ G+ +VVSPL+
Sbjct: 17 LRKVFGKPDFRGCQKEAIECALRGEDIFIIAPTGMGKSLCYQLPAIVVDHGVTIVVSPLL 76
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM NQV L K + L+ST +++ + +I EDL G P +RLLYVTPEL +T F +
Sbjct: 77 ALMNNQVDILCAKNLPAATLNSTTSIENRKRILEDLACGHPQVRLLYVTPELLSTENFRN 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
KL ++ G L+ IDEAHC+S WGHDFR Y+ LS LR P +PI+ALTATA KV+
Sbjct: 137 KLLNVYQHGELHRFVIDEAHCVSEWGHDFRKDYKLLSFLRKKYPKIPIMALTATATEKVR 196
Query: 209 KDVMESLCLQNPLVLK---SSFNRPNLFYEVRYKDLLDDAYADL---------------- 249
D+ + L L P LK F+R NL +EVR+K D Y D
Sbjct: 197 LDIAKILGLPAPPTLKVFIEPFSRKNLHFEVRFKSDGKDHYEDFRKFILSVYARKKKRLF 256
Query: 250 ---CSVLKANG-------DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
+ + NG C I+Y +R TC+E++ L GI+ +YHAGL+ R
Sbjct: 257 LENKNFIDQNGGNYDIPVSICGIIYAKKRGTCEEVAERLKNDGINAQSYHAGLSSTMRDK 316
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
+ W + ++VAT+AFGMG+D++DVR V H+++ KSMEA+YQE+GRAGRD S+ +
Sbjct: 317 TMKLWYEGKIDIIVATIAFGMGVDKEDVRFVVHWDMSKSMEAYYQEAGRAGRDNKTSRCI 376
Query: 360 LYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQV--LDVAGKRFSRVLGNR 417
LYY +DR + +IL + + + ++R + +D S + ++ K V R
Sbjct: 377 LYYSREDRDKTRYILHQEKEQ-------KKRKRESEGNDLSNINSFEMLVKYCENVTKCR 429
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHP 461
+ ++ Y+S + + C SCD CK+P
Sbjct: 430 HL-------------FLVEYFSETISENSNNQYCIKSCDICKNP 460
>gi|395861752|ref|XP_003803142.1| PREDICTED: Bloom syndrome protein [Otolemur garnettii]
Length = 1389
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 641 HTKE-MLKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 699
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 700 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 759
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 760 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 819
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 820 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPYD 879
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D R V WI+ QV+ ATVAF
Sbjct: 880 SGIIYCLSRRECDTMAGTLRKDGLAALAYHAGLSDSERDEVQHKWINQDGCQVICATVAF 939
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 940 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEMSHCLLFYTYHDVTRLKRLIMMEK 999
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1000 DGNHHTKET 1008
>gi|357113938|ref|XP_003558758.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Brachypodium
distachyon]
Length = 704
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/341 (46%), Positives = 224/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I +++SG+D +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 85 FGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLTALGIPAYMLTSTTNKEVEKLIYKALEKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNL+Y+V K ++ D A+ + N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTVNRPNLYYKVYEKSSVGKVVIDEIANFITESYPNKES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GI+ YHA ++ AR V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGIAADYYHADMDSVAREKVHMRWSKSKSQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R
Sbjct: 384 FVVHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVPR 424
>gi|77552741|gb|ABA95538.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 556
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 223/341 (65%), Gaps = 6/341 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR 424
>gi|332260119|ref|XP_003279133.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Nomascus
leucogenys]
gi|332260121|ref|XP_003279134.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 2 [Nomascus
leucogenys]
Length = 435
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/417 (41%), Positives = 248/417 (59%), Gaps = 14/417 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 ARGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRTRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKSSERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGK--RFSRVLGNRYWDVW 422
++ F++ K +K + + S K +I F ++ + R+ R G W
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGRWGRGHGKSLRAAW 424
>gi|154253433|ref|YP_001414257.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
gi|154157383|gb|ABS64600.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
Length = 633
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 227/357 (63%), Gaps = 15/357 (4%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+KPL E ++K + FG FR +Q + I+ V+ G D L+PTG GKS+CYQIPAL
Sbjct: 32 DKPLPHPEEVLKSI---FGLPSFRGEQAEIIRHVVDGGDAVVLLPTGAGKSLCYQIPALC 88
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G+ +VVSPLIALM +QV L++ G+ L+ST T + I E L +G+ L LLYV
Sbjct: 89 REGVAVVVSPLIALMRDQVEALRQSGVRAAALNSTLTQEEARDIREALTAGE--LDLLYV 146
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE A+ GF+S L ++ L L AIDEAHCIS WGHDFRP Y +L L+ PDVP
Sbjct: 147 TPERLASDGFISFLARVP----LALFAIDEAHCISQWGHDFRPEYLQLGRLKERFPDVPR 202
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
LALTATA P+ + D++ L L + + +SF+RPN+ Y + KD +A + L LKA+
Sbjct: 203 LALTATADPQTRDDLVHRLQLDDARIFSASFDRPNIRYTIVRKD---NAKSQLRDFLKAH 259
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R +E + +L+A GI YHAGL+ R D ++ V+VAT+
Sbjct: 260 EGASGIVYCLSRKKVEETADWLTAQGILALPYHAGLDRSIRDKHQDAFLKDEGPVLVATI 319
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
AFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD LPS + + +GM D RRRM
Sbjct: 320 AFGMGIDKPDVRFVAHLDLPSSIEAYYQETGRAGRDGLPSDAWMAWGMSDVSLRRRM 376
>gi|297851930|ref|XP_002893846.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
gi|297339688|gb|EFH70105.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
Length = 704
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 224/338 (66%), Gaps = 6/338 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 84 FGISKYRANQKEIINAIMAGRDVLVIMAAGGGKSLCYQLPAILRGGTTLVVSPLLSLIQD 143
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 144 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEHDLKILYVTPEKVSKSKRFMSKLEK 203
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++ALTATA KVQ D++
Sbjct: 204 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLI 263
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + SS NRPNLFY VR K ++ D A+ +N ++ IVYC R
Sbjct: 264 EMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKVVVDEIAEFIRESYSNNES-GIVYCFSR 322
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 323 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 382
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V H ++ KSME +YQESGRAGRD LPS+ +L++ D
Sbjct: 383 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSAD 420
>gi|440895196|gb|ELR47457.1| ATP-dependent DNA helicase Q5 [Bos grunniens mutus]
Length = 987
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/380 (44%), Positives = 236/380 (62%), Gaps = 15/380 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPDRRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA--- 247
D P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 248 DLCSVLKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
D C LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V
Sbjct: 243 DFC--LKALGQKADKGLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLV 300
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
++W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS L
Sbjct: 301 QNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRL 360
Query: 361 YYGMDDRRRMEFILSKNQSK 380
YY DR ++ F++ K +K
Sbjct: 361 YYSRSDRDQVSFLIRKEVAK 380
>gi|296813367|ref|XP_002847021.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
gi|238842277|gb|EEQ31939.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
Length = 1550
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/409 (42%), Positives = 245/409 (59%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL++I + LSGRD F LMPTGGGKS+CYQ+P++ K G + +V+S
Sbjct: 693 MREIFHLRGFRPNQLESINSTLSGRDTFVLMPTGGGKSLCYQLPSIIKTGQTKGVTIVIS 752
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS--GKPSLRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + +T I +L S ++LLYVTPE+ A
Sbjct: 753 PLLSLMQDQVAHLQKLHVKAFLINGDVSKDERTSIMSNLRSLRADSHIQLLYVTPEMLAK 812
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L +R VP++ALTAT
Sbjct: 813 SRAMESALLQLHSNKKLARIVIDEAHCVSQWGHDFRPDYTALGKMRERYTGVPVMALTAT 872
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + C
Sbjct: 873 ATPNVQVDVIHNLHMKGCDVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITTDYSGKCG 932
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S R V+VAT+AFGM
Sbjct: 933 IIYCLSRKTCERVAMQLSSKFGVKTAHYHAGLSSKERFAVQRDWQSGRHTVIVATIAFGM 992
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + ++++KN+
Sbjct: 993 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYHDSVSINYMINKNKD- 1051
Query: 381 NSQSFSTRERSSKKSISDFS---------QVLDVAGKRFSRVLGNRYWD 420
+Q R+R + ++ F Q+L ++F R NR D
Sbjct: 1052 TTQEQKHRQRQMLRHVTQFCENITDCRRVQILAYFDEKFKREDCNRTCD 1100
>gi|300796980|ref|NP_001179255.1| ATP-dependent DNA helicase Q5 [Bos taurus]
gi|296476023|tpg|DAA18138.1| TPA: RecQ protein-like 5-like [Bos taurus]
Length = 987
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 265/469 (56%), Gaps = 36/469 (7%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
D P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 S-VLKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G C I+YC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVW 422
DR ++ F++ K +K + + S K ++ F ++ F G R+
Sbjct: 363 SRSDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVLAFDALVA-----FCEESGCRH---- 412
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ C CD C++P + K L L
Sbjct: 413 ---------AAIAKYFGDS------PPACTKGCDCCQNPTGVRKQLDAL 446
>gi|344284334|ref|XP_003413923.1| PREDICTED: Bloom syndrome protein [Loxodonta africana]
Length = 1429
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACIAPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYQRTLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPLVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ ATVAF
Sbjct: 902 SGIIYCLSRRECDTMAETLKKNGLAALAYHAGLSDCARDEVQHKWINQDGCQVICATVAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILTEK 1021
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1022 DGNQHTKET 1030
>gi|51242947|ref|NP_001003715.1| ATP-dependent DNA helicase Q5 isoform 2 [Homo sapiens]
gi|5410448|gb|AAD43061.1|AF135183_1 Recq helicase 5 [Homo sapiens]
gi|7959115|dbj|BAA95954.1| DNA helicase recQ5 gamma [Homo sapiens]
gi|16877308|gb|AAH16911.1| RECQL5 protein [Homo sapiens]
gi|119609699|gb|EAW89293.1| RecQ protein-like 5, isoform CRA_d [Homo sapiens]
Length = 435
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 173/417 (41%), Positives = 249/417 (59%), Gaps = 14/417 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGK--RFSRVLGNRYWDVW 422
++ F++ K +K + + S K +I F ++ + R+ R G W
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGRWGRGHGKSLRAAW 424
>gi|373111502|ref|ZP_09525757.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|423131855|ref|ZP_17119530.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|423135590|ref|ZP_17123236.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|423330145|ref|ZP_17307945.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
gi|371640169|gb|EHO05774.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|371640694|gb|EHO06290.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|371640856|gb|EHO06450.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|404602617|gb|EKB02313.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
Length = 731
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 243/398 (61%), Gaps = 17/398 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A L+S+ T ++ ED+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSSEHGVA-HVLNSSLTKTEIAQVKEDIKSG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++S L+ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+PI+ LTA
Sbjct: 125 TKEEYVSFLQGEK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRSLGDIPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + N K+SFNRPNLFYE+R K + D+ +K +
Sbjct: 181 TATPKVQEDILKNLEIPNANTFKASFNRPNLFYEIRPK--TKNVETDIIRFIKQHQGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAE 358
Query: 381 NSQSFSTRERS---SKKSISDFSQVLDVAGKRFSRVLG 415
++ + ++ S+S +L G+ F V G
Sbjct: 359 QEIGYALLQEVVAYAETSMSRRKFILHYFGEEFDEVNG 396
>gi|345315332|ref|XP_001515695.2| PREDICTED: Bloom syndrome protein [Ornithorhynchus anatinus]
Length = 865
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 226/369 (61%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 71 HSKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGV 129
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 130 SIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEK 189
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 190 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNVLRQKFPSVPVMAL 249
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y+V K A+ L + K +
Sbjct: 250 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYDVLPKKPKKVAFDCLSWIRKHHPYD 309
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 310 SGIIYCLSRRECDTMALTLRKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 369
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 370 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYSYHDVIRLKRLILMEK 429
Query: 379 SKNSQSFST 387
NS + T
Sbjct: 430 DGNSHTRQT 438
>gi|260062261|ref|YP_003195341.1| ATP-dependent DNA helicase [Robiginitalea biformata HTCC2501]
gi|88783823|gb|EAR14994.1| putative ATP-dependent DNA helicase [Robiginitalea biformata
HTCC2501]
Length = 733
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 223/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q D I+ ++ GRD F +MPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +VK + ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGVSDNDGVAHVLNSSLTKGEVKA-VKEDITSG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ L+ + L+ VAIDEAHCIS WGHDFRP YR L S+ + L D+PI+ALTATA
Sbjct: 129 YVDFLQGV----TLSFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + V K+SFNRPNL+YEV+ K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGIPEAEVFKASFNRPNLYYEVQPK--TKNVDADIIRFVKKNAGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E ++
Sbjct: 303 PDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMA 353
>gi|302653064|ref|XP_003018365.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
gi|291182004|gb|EFE37720.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
Length = 1341
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/409 (41%), Positives = 247/409 (60%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 997 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1055
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+ R+R + ++ F +Q+L ++F R NR D
Sbjct: 1056 TTHEQKQRQRQMLRHVTQFCENITDCRRAQILAYFDEKFKREDCNRTCD 1104
>gi|432093931|gb|ELK25783.1| Bloom syndrome protein [Myotis davidii]
Length = 1296
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 532 HTKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 590
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 591 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 650
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 651 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 710
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 711 TATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 770
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G+ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 771 SGIIYCLSRRECDTMADTLQKNGLPALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 830
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 831 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYYDVTRLKRLILMEK 890
Query: 379 SKNSQSFST 387
N + T
Sbjct: 891 DGNHHTRET 899
>gi|355568922|gb|EHH25203.1| hypothetical protein EGK_08985 [Macaca mulatta]
Length = 991
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 266/464 (57%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPMAVRRQLEAL 447
>gi|426346802|ref|XP_004041060.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 3 [Gorilla gorilla
gorilla]
gi|426346804|ref|XP_004041061.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Gorilla gorilla
gorilla]
Length = 435
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 243/396 (61%), Gaps = 12/396 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL 403
++ F++ K +K + + S K +I F ++
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALV 403
>gi|380790165|gb|AFE66958.1| ATP-dependent DNA helicase Q5 isoform 1 [Macaca mulatta]
gi|383412321|gb|AFH29374.1| ATP-dependent DNA helicase Q5 isoform 1 [Macaca mulatta]
Length = 991
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 266/464 (57%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPMAVRRQLEAL 447
>gi|435850506|ref|YP_007312092.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
gi|433661136|gb|AGB48562.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
Length = 692
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 236/365 (64%), Gaps = 12/365 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ LR +FG+ FR Q D I+ V++G+D F LMPTGGGKS+CYQ+PAL G+ +VVSPL
Sbjct: 3 RTLRKYFGYDTFRPLQEDIIKDVIAGKDVFVLMPTGGGKSICYQLPALLMNGVTVVVSPL 62
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ +L+ST + + +I ++L++ ++LLYV PE +
Sbjct: 63 ISLMKDQVDTLRANGVEAAYLNSTLSYKESNQIKQELENN--IIKLLYVAPERLTLSSTL 120
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L +I +NL AIDE+HCIS WGHDFRP YRKLS L+ P +PI+ALTATA PKV
Sbjct: 121 TLLDRIK----VNLFAIDESHCISEWGHDFRPEYRKLSILKRKYPHIPIIALTATATPKV 176
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+KD + L +++ +SFNR NL Y+VR K + Y + L+ D I+YC
Sbjct: 177 RKDTISQLHIEDCNTYVASFNRKNLLYQVRPKK---ETYEQIVEFLRKRKDKSGIIYCQS 233
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R T DEL+ L G + YHAGL+D ARS D +I +++VAT+AFGMGID+ +V
Sbjct: 234 RKTVDELTGKLRKSGFNALPYHAGLSDAARSRNQDIFIKDDAEIIVATIAFGMGIDKPNV 293
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI---LSKNQSKNSQS 384
R V H+++P+++E++YQE+GR GRD L + +L++ D+ ++++ ++K++ + +
Sbjct: 294 RFVIHYDLPRNLESYYQETGRGGRDGLECECILFFSRGDKYKIDYFIDQIAKSEEREAAR 353
Query: 385 FSTRE 389
+E
Sbjct: 354 LKLKE 358
>gi|326471382|gb|EGD95391.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1556
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 170/409 (41%), Positives = 247/409 (60%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R P VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYPGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+
Sbjct: 997 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNKET 1056
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+ R+R + ++ F +Q+L ++F R NR D
Sbjct: 1057 TYEQ-KQRQRQMLRHVTQFCENITDCRRAQILAYFDEKFKREDCNRTCD 1104
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 226/347 (65%), Gaps = 9/347 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ FG++QFR Q I ++L+GR+ F +MPTG GKS+CYQ+PA+ G +V+
Sbjct: 11 TLKERLKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPAIVSDGTAIVI 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM+NQV L GI +FL+ST + K+ +D SG SL+LLY+ PE
Sbjct: 71 SPLIALMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLSG--SLKLLYIAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ LKK + ++ VAIDEAHCIS WGHDFRP YRK+ + + + ++P++ALTATA
Sbjct: 129 ENLDFLKKAN----ISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D+ ++L +++ + KSSFNR NL+YE++ K DA L +K N IVY
Sbjct: 185 PKVQQDIQKNLQMEDANLYKSSFNRKNLYYEIKPKI---DAKKQLIKYVKQNKGKSGIVY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R T ++++ L+ I YHAGL+ R + D +++ V+VAT+AFGMGID+
Sbjct: 242 CLSRKTVEDIAELLNVNDIKALPYHAGLDPLTRMNNQDAFLNEEVDVIVATIAFGMGIDK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H++ PKS+E +YQE+GRAGRD L +++Y DD ++E
Sbjct: 302 PDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYSYDDIVKLE 348
>gi|51242943|ref|NP_001003716.1| ATP-dependent DNA helicase Q5 isoform 3 [Homo sapiens]
gi|5410449|gb|AAD43062.1|AF135183_2 Recq helicase 5 [Homo sapiens]
gi|4191812|dbj|BAA74454.1| DNA helicase [Homo sapiens]
gi|7959111|dbj|BAA95952.1| DNA helicase recQ5 alpha [Homo sapiens]
gi|119609700|gb|EAW89294.1| RecQ protein-like 5, isoform CRA_e [Homo sapiens]
gi|119609701|gb|EAW89295.1| RecQ protein-like 5, isoform CRA_e [Homo sapiens]
Length = 410
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 243/396 (61%), Gaps = 12/396 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL 403
++ F++ K +K + + S K +I F ++
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALV 403
>gi|401827051|ref|XP_003887618.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
gi|392998624|gb|AFM98637.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
Length = 766
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 175/439 (39%), Positives = 252/439 (57%), Gaps = 34/439 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L EK I ++S + ++ ++E L S + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLEKDILALPINSNLSRTERSLVFEVLGSEELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRARYPSVPIIALTATATKKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 LDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISDRLKKY-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQ--KQ 583
Query: 388 RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447
R+R +++ F + + R +VL H ++
Sbjct: 584 RQREDLEAVIQFCE--NKTDCRRMQVLA-------------------------HFGEKFD 616
Query: 448 VSLCKNSCDACKHPNLLAK 466
+CK +CD C+ ++ K
Sbjct: 617 PQMCKKTCDNCRREAIVKK 635
>gi|392337763|ref|XP_003753349.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 168/371 (45%), Positives = 226/371 (60%), Gaps = 6/371 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1000
Query: 379 SKNSQSFSTRE 389
N + TRE
Sbjct: 1001 DGN---YHTRE 1008
>gi|355754382|gb|EHH58347.1| hypothetical protein EGM_08175 [Macaca fascicularis]
Length = 991
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 266/464 (57%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + ++ S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGSKA-SDKATILAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPMAVRRQLEAL 447
>gi|197102262|ref|NP_001126651.1| ATP-dependent DNA helicase Q5 [Pongo abelii]
gi|55732243|emb|CAH92825.1| hypothetical protein [Pongo abelii]
Length = 990
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 180/464 (38%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNTLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQETDKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNNWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K ++ F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKP-SDKATVMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRQLEAL 447
>gi|110225360|ref|NP_001035992.1| Bloom syndrome protein homolog isoform 2 [Mus musculus]
gi|5921178|sp|O88700.1|BLM_MOUSE RecName: Full=Bloom syndrome protein homolog; Short=mBLM; AltName:
Full=RecQ helicase homolog
gi|3452495|emb|CAB10933.1| BLM protein [Mus musculus]
gi|162318414|gb|AAI57096.1| Bloom syndrome homolog (human) [synthetic construct]
Length = 1416
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1018 DGNYHTKET 1026
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 228/356 (64%), Gaps = 9/356 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ +L+ FG++ +R+ Q + I AVL GRDCF L+PTGGGKS+CYQ+PAL PG+ LV
Sbjct: 3 EQLLAVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + + L G+ L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHCIS WGHDFRP Y LS L+ P VP +ALTATA
Sbjct: 121 PSFLERLQEVG----VSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L L NP + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEK---FRPLEQLLAYLKQQENQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ ++R V HF +P+++EA+YQE+GRAGRD + ++++L + D RM+ L ++
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEEN 349
>gi|189527306|ref|XP_701357.3| PREDICTED: Bloom syndrome protein homolog, partial [Danio rerio]
Length = 1261
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/364 (45%), Positives = 221/364 (60%), Gaps = 2/364 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA G+ +V+S
Sbjct: 666 MMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVIS 725
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL +L+ +QV L I LS + +IY L P+++LLY TPE G
Sbjct: 726 PLRSLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASG 785
Query: 146 FM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
M S L+ ++ RGLL + IDEAHC+S WGHDFRP Y++L LR P+VPI+ALTATA
Sbjct: 786 RMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATAT 845
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQKD++ L + P V SFNR NL Y V K + + K IVY
Sbjct: 846 PRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKYYPRDSGIVY 905
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGID 323
CL R CD L+ L GI+ AYHAGL+D R V + WI+ QV+ AT+AFGMGID
Sbjct: 906 CLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGID 965
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ +++ ++ N Q
Sbjct: 966 KPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGNQQ 1025
Query: 384 SFST 387
S +T
Sbjct: 1026 SKAT 1029
>gi|302509478|ref|XP_003016699.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
gi|291180269|gb|EFE36054.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
Length = 1441
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 170/409 (41%), Positives = 247/409 (60%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 668 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 727
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 728 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 787
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 788 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 847
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 848 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 907
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 908 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 967
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 968 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1026
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+ R+R + ++ F +Q+L ++F R NR D
Sbjct: 1027 TTHEQKQRQRQMLRHVTQFCENITDCRRAQILAYFDEKFKREDCNRTCD 1075
>gi|392344358|ref|XP_003748936.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 168/371 (45%), Positives = 226/371 (60%), Gaps = 6/371 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1000
Query: 379 SKNSQSFSTRE 389
N + TRE
Sbjct: 1001 DGN---YHTRE 1008
>gi|226693393|ref|NP_031576.4| Bloom syndrome protein homolog isoform 1 [Mus musculus]
Length = 1419
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 662 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 721 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 781 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 841 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 901 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 960
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 961 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1020
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1021 DGNYHTKET 1029
>gi|254425231|ref|ZP_05038949.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
gi|196192720|gb|EDX87684.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
Length = 738
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 155/372 (41%), Positives = 232/372 (62%), Gaps = 7/372 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
+++ AL L+ FGH QFR +Q ++ VL +D +MPTGGGKS+CYQ+PAL +PG
Sbjct: 3 NQEPALESALKHFFGHDQFRFEQRSIVEQVLKNKDVLVIMPTGGGKSLCYQLPALLRPGT 62
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLIALM++QV+ LK+ GI FL+ST + + +DL GK +++LY+ PE
Sbjct: 63 TIVISPLIALMQDQVVALKDNGIEATFLNSTLSFEEVRSRQKDLLMGK--IKILYIAPER 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
T F LK++ + ++ AIDEAHC+S WGHDFRP YR+L ++ P +PI+ALT
Sbjct: 121 LFTSSFHDFLKQLSQKVGISTFAIDEAHCVSEWGHDFRPEYRQLFQIKQLYPQIPIIALT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT- 259
ATA +V+ D+++ L L +P V SSFNR NL+YEV K Y L + ++ +
Sbjct: 181 ATATQRVRTDIVQQLRLNDPTVYISSFNRQNLYYEVIQKS--RKPYQQLLAKIQQHQGKE 238
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R DE+S L+ GIS YHAGL + R + +I Q++VATVA
Sbjct: 239 KGAGIIYCLSRKHVDEVSNNLTKDGISALPYHAGLTNTQRENNQTKFIRDDVQIIVATVA 298
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ DVR V H+++P+++E++YQESGRAGRD + + +G D + +++ +
Sbjct: 299 FGMGINKPDVRFVIHYDLPRNLESYYQESGRAGRDSEAASCTILFGWGDVHTVRYLIGQK 358
Query: 378 QSKNSQSFSTRE 389
Q + ++
Sbjct: 359 ADPGEQRIAQQQ 370
>gi|319954189|ref|YP_004165456.1| ATP-dependent DNA helicase recq [Cellulophaga algicola DSM 14237]
gi|319422849|gb|ADV49958.1| ATP-dependent DNA helicase RecQ [Cellulophaga algicola DSM 14237]
Length = 733
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 240/396 (60%), Gaps = 18/396 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ Q I ++L G++CF +MPTGGGKS+CYQ+PAL + G ++VSPLIA
Sbjct: 12 LKKYFGFSEFKGLQESVITSILEGKNCFVVMPTGGGKSLCYQLPALMQEGTAIIVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS ++K ++ D+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLTKTEIK-QVKSDITSG--ITKLLYVAPESLTKDE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ L+ + L+ VA+DEAHCIS WGHDFRP YR L S+ + L D +PI+ LTATA
Sbjct: 129 YVEFLQSVK----LSFVAVDEAHCISEWGHDFRPEYRNLRSIISRLDDTIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + + K+SFNRPNLFYEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDIIKNLGITDADLFKASFNRPNLFYEVRPK--TQNIEADIIRFVKQNTGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEGVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS----KNQSK 380
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S Q
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQEI 362
Query: 381 NSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGN 416
+ ++ S+S +L G+ F V G+
Sbjct: 363 GNALLQEMVAYAETSMSRRKFILHYFGEHFDDVTGD 398
>gi|148675036|gb|EDL06983.1| Bloom syndrome homolog (human), isoform CRA_b [Mus musculus]
Length = 1417
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 660 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 718
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 719 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 778
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 779 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 838
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 839 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 898
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 899 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 958
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 959 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1018
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1019 DGNYHTKET 1027
>gi|307195272|gb|EFN77228.1| Bloom syndrome protein-like protein [Harpegnathos saltator]
Length = 1091
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 227/371 (61%), Gaps = 9/371 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L+K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 393 HSQE-LLKIFRLKFGLYTFRPNQLQAINATLVGFDCFVLMPTGGGKSLCYQLPALLSTGL 451
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LSS+ T + +Y +L +P+L++LYVTPE
Sbjct: 452 TVVISPLKSLILDQVQKLISLDIPAAQLSSSVTDKQAEAVYRELCKKEPALKILYVTPEK 511
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + + ++ R LL IDEAHC+S WGHDFRP Y+KL LR P VP +AL
Sbjct: 512 ISASQKFCNTMTTLYERDLLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRKNYPKVPTMAL 571
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 572 TATATPRVRTDILHQLDMTKPKWFMSSFNRPNLRYSIISKKGKNCSDEVVAMIKTKFK-- 629
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R C++ +A+L I +YHAGL D R++ WI V+ AT+
Sbjct: 630 -NVCGIVYCLSRKDCEDYAAHLKKNCIKALSYHAGLTDNQRNNCQGKWILDEIHVICATI 688
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 689 AFGMGIDKPNVRYVIHAALPKSIEGYYQESGRAGRDGEIADCILFYNYADMHRIRKMIEM 748
Query: 377 NQSKNSQSFST 387
+ S N Q T
Sbjct: 749 DNS-NPQVIRT 758
>gi|409195579|ref|ZP_11224242.1| putative ATP-dependent DNA helicase [Marinilabilia salmonicolor JCM
21150]
Length = 726
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/346 (46%), Positives = 221/346 (63%), Gaps = 14/346 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q IQ VL G D F LMPTGGGKS+CYQ+PAL G +++SPLIA
Sbjct: 11 LKRHFGFDTFKGNQEAIIQNVLDGNDTFVLMPTGGGKSLCYQLPALILDGTAIIISPLIA 70
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ + GIA FL+S+ T ++ +D+ SGK RLLYV PE
Sbjct: 71 LMKNQVDAMRNFSEDDGIA-HFLNSSLTKSAIQQVKDDVISGKT--RLLYVAPESLTKED 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + + + D P++ALTATA P
Sbjct: 128 NIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIISEIGDAPVIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N V KSSFNR NLFYEVR K +A ++ +LK N AI+YC
Sbjct: 184 KVQHDIQKNLGMLNAHVYKSSFNRANLFYEVRPKV---NATREIIKILKENTGKSAIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ L GI YHAG++ RS D ++ V+VAT+AFGMGID+
Sbjct: 241 LSRKKVEELAETLVVNGIKALPYHAGMDAATRSGNQDKFLMEEIDVIVATIAFGMGIDKP 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR+V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 301 DVRIVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSYKDIQKLE 346
>gi|303390001|ref|XP_003073232.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302377|gb|ADM11872.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 762
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 34/439 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL G+ +VVSPL++
Sbjct: 225 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGVTIVVSPLLS 284
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q++ L +K I ++S + + ++E L S + ++ YVTPEL A G F
Sbjct: 285 LVQDQILNLLQKDILALPINSNLSRTERRLVFEALGSDELICKIFYVTPELIAKSGHFHE 344
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 345 VVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRRRYPSVPIIALTATATKKVE 404
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 405 LDILENLGIRGCETFKMSFNRANLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 462
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 463 KKECEMISEKLKKH-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 521
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 522 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQ--KQ 579
Query: 388 RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447
R++ +++ F + + R +VL H ++
Sbjct: 580 RQKEDLEAVIQFCE--NKTDCRRMQVLA-------------------------HFGEKFD 612
Query: 448 VSLCKNSCDACKHPNLLAK 466
LC+ +CD C+ ++ +
Sbjct: 613 PQLCRKTCDNCRRETIVKR 631
>gi|148675035|gb|EDL06982.1| Bloom syndrome homolog (human), isoform CRA_a [Mus musculus]
Length = 1420
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1021
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1022 DGNYHTKET 1030
>gi|332667951|ref|YP_004450739.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332336765|gb|AEE53866.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 713
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 232/363 (63%), Gaps = 11/363 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q + I+A+ +G+D LMPTGGGKS+C+QIPA+ PG +VVSPLI+
Sbjct: 10 LKRYFGYDQFRPLQAEIIRAIFAGKDALVLMPTGGGKSVCFQIPAVTMPGTCVVVSPLIS 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL+ GI FL+S + + K+ E +G +L LLYV+PE + F+S
Sbjct: 70 LMKDQVEGLRANGIQAAFLNSAIDSREQLKVEESFYAG--ALNLLYVSPEKLVSGNFVSI 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK RG +NL AIDEAHCIS+WGHDFRP Y ++ L+ + P VP++ALTATA +K
Sbjct: 128 LK----RGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPQVPVIALTATADKLTRK 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L+ P + +SF+RPNL EVR + ++ + I+YCL R
Sbjct: 184 DIVDQLKLEEPGIFIASFDRPNLSLEVRPGQ---QRLGQIQEFVQKHPKQAGIIYCLSRK 240
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T ++++A L+ G+ AYHAGL+ RS + D++I+ ++ ATVAFGMGID+ +VR
Sbjct: 241 TAEDVAAKLAQQGLKAEAYHAGLSPDRRSKIQDNFINDNIHIICATVAFGMGIDKSNVRW 300
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL--SKNQSKNSQSFST 387
V H+N+PK++E +YQE GRAGRD + +LL+Y D + I+ +N ++N
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLVK 360
Query: 388 RER 390
ER
Sbjct: 361 LER 363
>gi|356531519|ref|XP_003534325.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Glycine max]
Length = 695
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 223/341 (65%), Gaps = 7/341 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 84 FGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 143
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST K IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 144 QVMGLTALGIPAYMLTSTNKGDEKF-IYKTLEKGEGELKILYVTPEKISKSKRFMSKLEK 202
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VPI+ALTATA +VQ D++
Sbjct: 203 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLI 262
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY V+ K ++ D A+ N ++ IVYC R
Sbjct: 263 EMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNES-GIVYCFSR 321
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +++ QV+V TVAFGMGI++ DVR
Sbjct: 322 KECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVR 381
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V H ++ KSME +YQESGRAGRD LPS+ LLY+ D R
Sbjct: 382 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPR 422
>gi|114670488|ref|XP_001144082.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Pan
troglodytes]
gi|410207584|gb|JAA01011.1| RecQ protein-like 5 [Pan troglodytes]
gi|410261024|gb|JAA18478.1| RecQ protein-like 5 [Pan troglodytes]
gi|410299660|gb|JAA28430.1| RecQ protein-like 5 [Pan troglodytes]
gi|410336147|gb|JAA37020.1| RecQ protein-like 5 [Pan troglodytes]
Length = 991
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + + + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K Q + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAK-LQVKRGNKASDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRQLEAL 447
>gi|170042287|ref|XP_001848863.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
gi|167865792|gb|EDS29175.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
Length = 1437
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 217/353 (61%), Gaps = 2/353 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+ R FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +VVSPL
Sbjct: 687 VFRETFGLRSFRPNQLQVINATLLGHDCFVLMPTGGGKSLCYQLPAIMTEGVTIVVSPLK 746
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FM 147
+L+ +QV L I LS + + KIY DL S KP L+LLYVTPE ++ G F
Sbjct: 747 SLIHDQVNKLGSLDIPAAHLSGEVSYADQQKIYADLSSPKPVLKLLYVTPEKISSSGRFQ 806
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L +++ L IDEAHC+S+WGHDFRP Y+KLS LR P +P++ALTATA P+V
Sbjct: 807 NILTELYRMKQLGRFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPTIPVMALTATANPRV 866
Query: 208 QKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ DV++ L L +N SFNRPNL Y +R K + + + K IVYCL
Sbjct: 867 RIDVLKQLGLGRNTKWFLCSFNRPNLKYIIRPKQGVATKAEIMELIKKKFPRATGIVYCL 926
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ CD+LSA + GI +YHAGL D R + DWI+ + +VV AT+AFGMGID+ D
Sbjct: 927 SKKDCDQLSAEMRCAGIKAKSYHAGLGDAEREATQKDWITDKIKVVCATIAFGMGIDKPD 986
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
VR V H ++PKS+E +YQE+GRAGRD + +L+Y D R ++ + S
Sbjct: 987 VRYVIHHSMPKSIEGYYQEAGRAGRDGELATCVLFYNYSDMLRYRKMMDHDSS 1039
>gi|428307721|ref|YP_007144546.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
gi|428249256|gb|AFZ15036.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
Length = 728
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 243/395 (61%), Gaps = 10/395 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ +FG+ FR Q ++ L RD LMPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 6 SLEQALKHYFGYDNFRPGQRQIVEEALEKRDLLILMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLI+LM++QV L + GI FL+ST V+++ L+ GK +++LYV PE T
Sbjct: 66 SPLISLMQDQVEALLDNGIGATFLNSTVDWADVRSREVGILN-GK--IKILYVAPERLLT 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F L+++ + ++ AIDEAHC+S WGHDFRP YR+L LR DVPI ALTATA
Sbjct: 123 DKFTLFLEQVQRQVGISAFAIDEAHCVSQWGHDFRPEYRQLKQLRQRYRDVPIFALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L+ P + SSFNRPNL+YEV+ K AY L +++ + IV
Sbjct: 183 TNRVREDIIQQLALRQPSIHISSFNRPNLYYEVQLKQ--KQAYLQLLKLIR-QYEGSGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DE++ L GIS YHAG+ D+ R+ +I QV+VAT+AFGMGI+
Sbjct: 240 YCLSRRHVDEVAFRLQKDGISALPYHAGMTDEERAYNQTRFIRDDVQVMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P++ L +G D R + +++ + Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPARCTLLFGTGDLRTINYLIEQKSDAQEQ 359
Query: 384 SFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ R + + D+++ D K G R+
Sbjct: 360 RVA---RQQLQKMIDYAEGTDCRRKIQLSYFGERF 391
>gi|3370996|dbj|BAA32001.1| mBlm [Mus musculus]
Length = 1416
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1018 DGNYHTKET 1026
>gi|403280534|ref|XP_003931772.1| PREDICTED: ATP-dependent DNA helicase Q5 [Saimiri boliviensis
boliviensis]
Length = 990
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 265/464 (57%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKELLADLEQEKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRYLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGRAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADKRLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGNPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K SI F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKASIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPTAVRRQLEAL 447
>gi|300777720|ref|ZP_07087578.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
gi|300503230|gb|EFK34370.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
Length = 734
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSTFKGQQEQIIDNLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + + G+A SS Q K ++++D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTK-QVFDDIKSGKT--KLLYVAPESLIKDD 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LK++ ++ AIDEAHCIS WGHDFRP YR L + + + +VP++ALTATA P
Sbjct: 129 YLDFLKEVK----ISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + + IVYC
Sbjct: 185 KVQDDIQKTLGMTNALVFKESFNRPNLYYEVRPKVNVD---KEIVKFINQHKGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 302 DVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|397484324|ref|XP_003813327.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Pan paniscus]
Length = 991
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + + + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K Q + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAK-LQVKRGNKASDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRQLEAL 447
>gi|119943986|ref|YP_941666.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
gi|119862590|gb|ABM02067.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
Length = 602
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 228/352 (64%), Gaps = 13/352 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ +FR+ Q I + GRD +MPTGGGKS+C+QIPAL KPGI V+SPLI+LM++
Sbjct: 17 FGYNEFREGQELIINQLCEGRDALVVMPTGGGKSLCFQIPALVKPGICFVISPLISLMKD 76
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A +L+S+ + Q + ++ D+ SG+ L+L+Y+ PE P F+S+L +
Sbjct: 77 QVDALRACGVAAAYLNSSLSYQQQNQVLNDMHSGQ--LKLVYMAPERLLRPDFLSRLDNL 134
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+NL AIDEAHCIS WGHDFRP Y L L+ PD+P++ALTATA Q+D++
Sbjct: 135 P----INLFAIDEAHCISQWGHDFRPEYALLGQLKQRFPDIPLVALTATADYATQQDILA 190
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L +PL+ SF+RPN+ Y + +Y+ L L + L + + I+YC R
Sbjct: 191 RLQFNDPLIAIHSFDRPNIEYLLIEKYRPL-----NQLANYLDEHKNESGIIYCTSRRRT 245
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+EL+ L G+S YHAG+ + R SV D +I + +VVATVAFGMGID+ +VR V
Sbjct: 246 EELAEKLRVKGLSVRCYHAGMMIEERQSVQDLFIKDKVDIVVATVAFGMGIDKPNVRFVV 305
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
H+ IPK++E++YQE+GRAGRD LP++++L+Y D R+ +L KN ++ Q
Sbjct: 306 HYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADAGRVRSMLEKNTNEQQQ 357
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 218/343 (63%), Gaps = 9/343 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L L+ FG+ FR Q + IQ V++G D F +MPTGGGKS+CYQIPAL + G+ +V
Sbjct: 3 DSLDHTLKSVFGYGSFRPPQREVIQRVVAGEDVFLVMPTGGGKSLCYQIPALHREGVAIV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLI+LM++QV GL + G+ +S+ T + + L G+ L LLYV PE
Sbjct: 63 VSPLISLMKDQVDGLVDAGVRAACYNSSLTAEESRAVSRQLAQGE--LDLLYVAPERLLL 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L + L L AIDEAHCIS WGHDFRP Y KL LR P VPI+A+TATA
Sbjct: 121 PDFLERLGGLK----LALFAIDEAHCISQWGHDFRPDYVKLGRLRELFPSVPIVAMTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P+ ++D++ L ++ + + F+RPN+ Y V K L S LK GD IV
Sbjct: 177 DPETRRDIIRQLGIERATLFVAGFDRPNITYAVIPKQ---KPVNQLLSFLKGRGDESGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y L R ++++ L G AAYHAGL D+ RS V D + +VVVATVAFGMGID
Sbjct: 234 YALSRKRVEQVTERLQQAGFDAAAYHAGLPDRERSRVQDAFRRDDLRVVVATVAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H+++PKS+E++YQE+GRAGRD LPS++L+ +GM D
Sbjct: 294 KPNVRFVVHYDLPKSVESYYQETGRAGRDGLPSQALMLFGMGD 336
>gi|389744568|gb|EIM85750.1| ATP-dependent DNA helicase [Stereum hirsutum FP-91666 SS1]
Length = 814
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 264/461 (57%), Gaps = 30/461 (6%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPL 87
+L+ FGH ++ KQ + +A SGRD + PTG GKS+C+Q+PALA+ G+ +VVSPL
Sbjct: 20 VLKDVFGHEDYKGKQKEIFEAAASGRDVLVVAPTGMGKSICFQVPALAQDEGLTIVVSPL 79
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
+AL++NQV L++ + LSS + + +I EDL SG+PS RLLY+TPE +T
Sbjct: 80 LALIKNQVARLRQNHVRVAALSSDVSRLEQDEIKEDLSSGEPSNRLLYITPERLSTGEIH 139
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L ++ LN + +DEAHCIS WGHDFR YR+L + R P VPI+ALTA+A P V
Sbjct: 140 RLLTVVYEANNLNRLVVDEAHCISEWGHDFRAEYRQLGAFRRKFPGVPIMALTASATPTV 199
Query: 208 QKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKD------LLDDAYADLCSV-LKANGDT 259
Q D+++SL + ++ L FNR NLFYEVRY ++D ++ + S+ + N +
Sbjct: 200 QDDIIKSLRMSEDHCKLVHPFNRSNLFYEVRYHASNDTMVQMEDVFSYISSLHRRRNRPS 259
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-----QVVVA 314
IVYC R TC+ELS +L G++ YH G+ A L DW+ +V A
Sbjct: 260 SGIVYCRTRATCNELSHFLRGRGLNSKPYHKGIKPDALDKTLTDWLKGGDGEEGIDIVCA 319
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR + HF++PKS E +YQE+GRAGRD L +K +LY+ +D R++ ++
Sbjct: 320 TIAFGMGIDKSDVRYIIHFDLPKSFEGYYQETGRAGRDDLAAKCVLYFSREDALRVKSLV 379
Query: 375 SKNQSKNSQSFSTRER--SSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLS 432
+K+QS + + S+++++ ++ A D+ L I +
Sbjct: 380 AKSQSVRQITAESAHAPPPSQRAVNSLGSLIKFA----------ENVDICRHLLICRYFG 429
Query: 433 LVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTS 473
V+ L+K + C CD CK+P K L+S
Sbjct: 430 EVIDANDTELVK----TFCDGMCDVCKYPEKTKKRREALSS 466
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 227/356 (63%), Gaps = 9/356 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ +L+ FG++ +R Q + I AVL GRDCF L+PTGGGKS+CYQ+PAL PG+ LV
Sbjct: 3 EQLLAVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + + L G+ L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHCIS WGHDFRP Y LS L+ P VP +ALTATA
Sbjct: 121 PSFLERLQEVG----VSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L L NP + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEK---FRPLEQLLAYLKQQENQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ ++R V HF +P+++EA+YQE+GRAGRD + ++++L + D RM+ L ++
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEEN 349
>gi|354489423|ref|XP_003506862.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Cricetulus griseus]
Length = 411
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 233/374 (62%), Gaps = 12/374 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKQLLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLMSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV SL L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFASLHLKQPVASFKTPCFRANLFYDVQFKELIPDLYGNLRDFCLK 248
Query: 255 ANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A G C IVYC R C++++ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADKGLLSGCGIVYCRTREACEQVAVELSSRGVNAKAYHAGLKAPDRTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRSD 368
Query: 367 RRRMEFILSKNQSK 380
R ++ F++ K K
Sbjct: 369 RDQVSFLIRKEIDK 382
>gi|402218656|gb|EJT98732.1| ATP-dependent DNA helicase [Dacryopinax sp. DJM-731 SS1]
Length = 966
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/461 (37%), Positives = 272/461 (59%), Gaps = 34/461 (7%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSP 86
++L FG+ ++ +Q + ++A + G D + PTG GKS+C+QIPA+A G+ +VVSP
Sbjct: 57 RVLTHTFGYTAYKGRQKEIVEAAVRGADVLVVAPTGMGKSLCFQIPAIADQFGVSIVVSP 116
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM NQV L+EKG+ L S + K++I +DL SG P +RLLY+TPE A+ F
Sbjct: 117 LLALMSNQVTTLREKGVNVASLCSDTSQAEKSRITKDLSSGHPRIRLLYITPEKLASAEF 176
Query: 147 MSKLKKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ K++ +R ++ L+ +DEAHCI+ WG DFRP YR L + R P+VPI+ALTA+A
Sbjct: 177 SKLMMKVYDNRQVMRLI-VDEAHCITEWGWDFRPEYRTLGNFRQKYPEVPIMALTASATA 235
Query: 206 KVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRY----------KDLLDDAYADLCSVL 253
VQ D++ SL + + +L+ FNR NLFYE+++ +DL+D Y + +
Sbjct: 236 AVQDDIVSSLKMSSEHLLRVVHPFNRKNLFYEIKFVANTEPHLIMQDLVD--Y--ILKLT 291
Query: 254 KANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
+ G +C I+YC R CD+++ +L GI+ YH G++ K ++ L +W+ + +VV
Sbjct: 292 ERRGRASCGIIYCRARAACDQVAGFLRRKGITAKPYHRGVSPKVLATTLQEWLDDKVEVV 351
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VATVAFGMGID+ DVR + H+++PKS E +YQE+GRAGRD SK +LYY ++D RR F
Sbjct: 352 VATVAFGMGIDKPDVRYILHYDLPKSFEGYYQETGRAGRDGSASKCILYYSIEDARRAMF 411
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLS 432
++ ++ K + + S+++ ++ +A + R+ + I +
Sbjct: 412 LVQQDLQKRIKGANKTATPSQRAPKSLELLIRMA----ENIKTCRH------VSICRYFG 461
Query: 433 LVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTS 473
+ +LK + C CD CKHP + + + +L S
Sbjct: 462 ESIDDKDRDVLK----TYCDKMCDVCKHPEKVRQRIQDLAS 498
>gi|399024201|ref|ZP_10726247.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
gi|398081075|gb|EJL71860.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
Length = 734
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 222/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ +Q I+ +L G+D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSTFKGQQEQIIENLLDGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + + G+A SS Q K ++++D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTK-QVFDDIKSGKT--KLLYVAPESLIKED 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LK++ ++ AIDEAHCIS WGHDFRP YR L + + + +VP++ALTATA P
Sbjct: 129 YLDFLKEV----TISFFAIDEAHCISEWGHDFRPEYRNLKLIIDKIANVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + + IVYC
Sbjct: 185 KVQDDIQKTLGMANALVFKESFNRPNLYYEVRPKVNVD---KEIVKFINQHKGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 302 DVRFVIHYDFPKSLESYYQETGRAGRDGGEGYCLAFYDPKDIEKLEKFLAQ 352
>gi|335297361|ref|XP_003358019.1| PREDICTED: ATP-dependent DNA helicase Q5 [Sus scrofa]
Length = 451
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/398 (43%), Positives = 245/398 (61%), Gaps = 16/398 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +V+SPLIAL+++QV L I L+S + Q + ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F LK + +R LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSV 252
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y D C
Sbjct: 185 VALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFC-- 242
Query: 253 LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
LKA G C IVYC R C++L+ LSA G++ AYHAGL R+ V ++W+
Sbjct: 243 LKALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWM 302
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +
Sbjct: 303 EGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRN 362
Query: 366 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL 403
DR ++ F++ K +K + + S K ++S F ++
Sbjct: 363 DRDQVSFLIRKEVAKLQEKRGNKA-SDKAALSAFDALV 399
>gi|413920232|gb|AFW60164.1| hypothetical protein ZEAMMB73_604033 [Zea mays]
Length = 618
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/373 (44%), Positives = 229/373 (61%), Gaps = 22/373 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A + +DCF LMPTGGGKS+CYQ+PA PG+ +VVSPL++L+++
Sbjct: 214 FGNKGFRPLQYEACRAAMDNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 273
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLK 151
Q++ L + + FL+S QT + + ++L GKP+ +LLYVTPE T FM L+
Sbjct: 274 QIVALTYRFAVPAAFLNSQQTSAQASAVIQELRCGKPAFKLLYVTPERIVTNYSFMETLR 333
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KDV
Sbjct: 334 GLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATESVRKDV 393
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N +VLK SF+R NL YEV K DLL + + + I
Sbjct: 394 LGALRIPNAVVLKRSFDRLNLNYEVIGKTKTFQKQLGDLLKERFM----------NESGI 443
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHA L + R+SV + W S +V+ AT+AFGMG
Sbjct: 444 VYCLSKNECADTAKFLREKYKIKCAHYHASLAARQRTSVQEKWHSGEVKVICATIAFGMG 503
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD+LP+ ++ Y D R+ +L ++
Sbjct: 504 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDELPAHCIVLYQKKDFSRIVCMLRNGENFR 563
Query: 382 SQSFSTRERSSKK 394
S+SF +KK
Sbjct: 564 SESFRVAMEQAKK 576
>gi|383934161|ref|ZP_09987603.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
gi|383704617|dbj|GAB57694.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
Length = 604
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 231/356 (64%), Gaps = 9/356 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ LL+ HFG+++FR Q I+A L+G+D F LMPTGGGKS+CYQ+PAL P + +VVS
Sbjct: 5 LLPLLKQHFGYSEFRSGQHAVIEAALAGQDSFVLMPTGGGKSLCYQLPALLLPQVTIVVS 64
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++QV LK GIA EF++S+ + + +++ L G +L+LLYV PE P
Sbjct: 65 PLMSLMKDQVDALKANGIAAEFVNSSLSREQVLQVFARLRQG--TLKLLYVAPERLLQPQ 122
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ +L+ + ++L AIDEAHCIS WGHDFRP Y L+ L+ VP++ALTATA
Sbjct: 123 FLDRLQDVG----VSLFAIDEAHCISQWGHDFRPDYMALALLKQRFASVPVMALTATADS 178
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+++ L LQ P V SF+RPN+ Y V+ K + L S L+ IVYC
Sbjct: 179 ATRQDILQQLNLQQPYVHLGSFDRPNIRYTVQEKFRPTE---QLISYLQQQDGASGIVYC 235
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL+ L G + AAYHAGL+ R+ V D + Q++VATVAFGMG+++
Sbjct: 236 SSRRKVDELTEQLKQRGFNAAAYHAGLSSDERNQVQDAFKRDDYQLIVATVAFGMGVNKS 295
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
++R V HF +P+++EA+YQE+GRAGRD +P++++L + D RM+ L +++
Sbjct: 296 NIRFVVHFELPRTIEAYYQETGRAGRDGVPAEAMLLFDPADIGRMKRWLDNEENQQ 351
>gi|302789379|ref|XP_002976458.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
gi|300156088|gb|EFJ22718.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
Length = 711
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 227/349 (65%), Gaps = 5/349 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + A++S ++ +M GGGKS+CYQ+PAL +PGI LVVSPL++L+++
Sbjct: 73 FGISTYRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQD 132
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL G++ L+ST + + + +IY L+ G +LR+LYVTPE A + FMSKL+K
Sbjct: 133 QVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEK 192
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA +VQ+D+
Sbjct: 193 CNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQ 252
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERT 269
E L + SS NRPNLFYEVR K + D D+ +K + IVYC R
Sbjct: 253 EMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRK 312
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L IS A YHA ++ R++V W S++ QV+V TVAFGMGI++ DVR
Sbjct: 313 ECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRF 372
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKN 377
V H + KS+E +YQESGRAGRD LPS+ +L++ D R + S+N
Sbjct: 373 VIHHTLSKSLETYYQESGRAGRDGLPSRCVLFFRPADVPRQSCMVFSEN 421
>gi|426238466|ref|XP_004013174.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Ovis aries]
Length = 985
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 269/469 (57%), Gaps = 36/469 (7%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + +L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPERRVRSMLKKVFGFDSFKTPLQERAIMAVVKGDQDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
D P +ALTATA P+V++DV +L L+ P+ + K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 S-VLKANGDTC-------AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G I+YC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGGGIIYCRTREACEQLAIELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVW 422
DR ++ F++ K +K + + S K ++ F ++ F G R+
Sbjct: 363 SRSDRDQVSFLIKKEVAKLQEKRGNKA-SDKAAVLAFDALVA-----FCEESGCRH---- 412
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ +P + C CD C++P + K L L
Sbjct: 413 ---------AAIAKYFG-----DLPPA-CTKGCDCCQNPAGVRKQLDAL 446
>gi|427712781|ref|YP_007061405.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427376910|gb|AFY60862.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 732
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 243/391 (62%), Gaps = 6/391 (1%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR Q + I A L+ +D ++PTGGGKS+C+Q+PAL KPG+ LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQAEIINASLNQQDVLAILPTGGGKSICFQLPALLKPGVTLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LIALM +QV+ L++ GI FL+ST + + +I+ L+ ++LLYV PE +
Sbjct: 64 LIALMLDQVLALQKNGIPATFLNSTLAAAEARARIHSILNG---EVKLLYVAPERLVSDS 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F + L IH + +DEAHC+S WGHDFRP YR+LS LR P +P++ALTATA
Sbjct: 121 FTALLANIHQTVGIASFVVDEAHCVSEWGHDFRPDYRQLSRLRELFPSIPMMALTATATH 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
V+ D+ E L L+ P + +SFNRPNL+YEV K + ++L +K + I+YC
Sbjct: 181 CVRADITEQLSLKQPFIHVASFNRPNLYYEVIEKSRGKVSLSELTRYIKKT-EGSGIIYC 239
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ R ++L++ L+ GIS YHAGLN+ R+ +I Q++VATVAFGMGI++
Sbjct: 240 MSRKNVEKLASELNENGISALPYHAGLNNDTRTDHQTRFIRDDVQIMVATVAFGMGINKP 299
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQS 384
DVR V H+++P+++E +YQESGR GRD P++ L++ D ++ + FI +K + ++
Sbjct: 300 DVRFVIHYDLPQTIEGYYQESGRGGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNEP 359
Query: 385 FSTRERSSKKSISDFSQVLDVAGKRFSRVLG 415
+R +++ + + D R + +LG
Sbjct: 360 LEDEQRIARQQLRQIAAYADSTLCRRTTLLG 390
>gi|115486585|ref|NP_001068436.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|77552472|gb|ABA95269.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|113645658|dbj|BAF28799.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|125535256|gb|EAY81804.1| hypothetical protein OsI_36975 [Oryza sativa Indica Group]
gi|125568785|gb|EAZ10300.1| hypothetical protein OsJ_00135 [Oryza sativa Japonica Group]
Length = 588
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/373 (45%), Positives = 226/373 (60%), Gaps = 22/373 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A +S D F LMPTGGGKS+CYQ+PA PG+ +VV PL++L+E+
Sbjct: 182 FGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIED 241
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K I FL+S QT + + ++L SGKPS +LLYVTPE + F+ L
Sbjct: 242 QIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGILI 301
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V KD+
Sbjct: 302 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKDI 361
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N VLK SF+R NL YEV K DLL + + ++ I
Sbjct: 362 LSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMNM----------SGI 411
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHAGL + RS+V W S +V+ AT+AFGMG
Sbjct: 412 VYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMG 471
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L + +
Sbjct: 472 IDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIVCMLRNSGNFK 531
Query: 382 SQSFSTRERSSKK 394
S+SF +KK
Sbjct: 532 SESFKVAMEQAKK 544
>gi|88603641|ref|YP_503819.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
gi|88189103|gb|ABD42100.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
Length = 606
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/361 (45%), Positives = 222/361 (61%), Gaps = 10/361 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
L RW FG+ +R Q + I VL GRD ++ TGGGKS+CYQIPAL + G+ +V+SPLI
Sbjct: 12 LHRW-FGYRTYRPGQKEIITHVLEGRDVLAVIATGGGKSLCYQIPALIRDGVGIVISPLI 70
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L E GI FL+STQ ++ K I + G SL+LLY++PE P F+
Sbjct: 71 ALMKDQVDCLAESGIPAAFLNSTQDVKDKRSIEGSILDG--SLKLLYISPERLVQPSFIE 128
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LK ++L AIDEAHCIS WGH+FRP YRKLS +R DVPI+ALTATA P V+
Sbjct: 129 FLKSTR----ISLFAIDEAHCISQWGHEFRPEYRKLSIIRRTFADVPIIALTATATPSVR 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L NP V SFNR NL Y + K+ D L LK++ + IVYC +
Sbjct: 185 SDIISELSLHNPAVFVGSFNRENLIYRIVKKE---DGEQQLVQFLKSHQNESGIVYCFSK 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+L+ L G S YHA L R D ++ +++VATVAFGMGI++ DVR
Sbjct: 242 RQVTDLARVLQKNGFSALPYHADLPKSVRHETQDRFLRDEVRIIVATVAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF++PK++E +YQE+GRAGRD P++ LL Y D R++E+++ + + S R
Sbjct: 302 FVVHFDLPKNLEHYYQETGRAGRDGDPAECLLLYSRGDFRKIEYLIEQMAEGTERQVSLR 361
Query: 389 E 389
+
Sbjct: 362 K 362
>gi|149057328|gb|EDM08651.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149057329|gb|EDM08652.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 999
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996
>gi|109118218|ref|XP_001098200.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Macaca mulatta]
Length = 991
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 266/464 (57%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ +P ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREEPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPMAVRRQLEAL 447
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 222/342 (64%), Gaps = 9/342 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ QFR Q + I+++L ++ F +MPTG GKS+CYQ+PA+ PG +V+SPLIA
Sbjct: 13 LKEVFGYGQFRGAQQEIIKSILGEKNTFVIMPTGAGKSLCYQLPAIVSPGSAIVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST T T++ +D+ +G+ ++LLYV PE +
Sbjct: 73 LMKNQVDQLNALGINAQFLNSTLTKGEITRVKKDVLNGE--VKLLYVAPESLTKESNVDF 130
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK ++ VAIDEAHCIS WGHDFRP YRK+ + + L ++PI+ALTATA PKVQ+
Sbjct: 131 LKKAQ----ISFVAIDEAHCISEWGHDFRPEYRKIRQIIDNLGNLPIIALTATATPKVQQ 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ +L +++ V KSSFNRPNL+YEVR K + L LK I+YCL R
Sbjct: 187 DIQRNLQMEDASVFKSSFNRPNLYYEVRPKIHVK---KQLIKYLKNKKGESGIIYCLSRK 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E+ +L I YHAGL+ R D +++ ++VAT+AFGMGID+ DVR
Sbjct: 244 KVEEIYEFLKVNDIKALPYHAGLDSSVRMRNQDAFLNEDADIIVATIAFGMGIDKPDVRC 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V H++ PKS+E +YQE+GRAGRD L + +++Y +D +++E
Sbjct: 304 VIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPNDIQKLE 345
>gi|338212508|ref|YP_004656563.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336306329|gb|AEI49431.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 746
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 225/350 (64%), Gaps = 9/350 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+ L + L+ FG++QFR +Q I +++ G + F +MPTG GKS+CYQ+PA+ GI +
Sbjct: 9 QHTLKERLKEIFGYSQFRGEQEAIINSIMGGNNTFVIMPTGAGKSLCYQLPAITTEGIAI 68
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L GI +FL+ST K+ +D G +L+LLY+ PE
Sbjct: 69 VISPLIALMKNQVDQLNAFGINAQFLNSTLNKAEINKVKKDALDG--TLKLLYIAPESLT 126
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTA 201
+ L+ R ++ VA+DEAHCIS WGHDFRP YR++ + N PD+P++ALTA
Sbjct: 127 KEENLDFLQ----RANISFVAVDEAHCISEWGHDFRPEYRRIRGIIDNINPDLPLIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L ++ + K+SFNR NL+YE+R K L D L +K N
Sbjct: 183 TATPKVQQDIVKNLRMEEAAMFKTSFNRKNLYYEIRPK--LADVNKQLIKYIKNNKGKSG 240
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R T +E++ L+ + YHAGL+ R D +++ V+VAT+AFGMG
Sbjct: 241 IIYCLSRKTVEEVANLLNVNDVKALPYHAGLDSSTRMHNQDAFLNEEADVIVATIAFGMG 300
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++ PKS+E +YQE+GRAGRD L +++Y +DD +++E
Sbjct: 301 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYCIDDIQKLE 350
>gi|374598547|ref|ZP_09671549.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|423323213|ref|ZP_17301055.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
gi|373910017|gb|EHQ41866.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|404609764|gb|EKB09128.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
Length = 731
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 226/350 (64%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E+GIA L+S+ T ++ ED+ G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSTEQGIA-HVLNSSLTKTEVNQVKEDIKQG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+++ L+++ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+PI+ LTA
Sbjct: 125 TKEEYVNFLQEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + N V K+SFNRPNL+YE++ K + +D+ +K
Sbjct: 181 TATPKVQEDILKNLEIPNANVFKASFNRPNLYYEIKPK--TKNIESDIIRFIKQRKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGWCLAYYSYKDIEKLE 348
>gi|395747150|ref|XP_002825880.2| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Pongo
abelii]
Length = 1398
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 223/369 (60%), Gaps = 11/369 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 640 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 698
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +Q I +L+ +T T IY L P ++LLYVTPE
Sbjct: 699 TIVISPLRSLIVDQ--------IPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 750
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 751 ICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 810
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 811 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 870
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 871 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDDCQVICATIAF 930
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 931 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEMSHCLLFYTYHDVTRLKRLIMMEK 990
Query: 379 SKNSQSFST 387
N + T
Sbjct: 991 DGNHHTRET 999
>gi|387791080|ref|YP_006256145.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379653913|gb|AFD06969.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 729
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 250/445 (56%), Gaps = 49/445 (11%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG +F+ +Q + I ++LSG D F +MPTGGGKSMCYQ+PAL G +
Sbjct: 4 KKSLFDNLQNFFGFEKFKGEQEEIITSILSGNDTFVIMPTGGGKSMCYQLPALMSDGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ K+ +D+ SG+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGSTDSIAHFLNSSLNKTETAKVKQDVLSGET--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ + L+ I ++ VA+DEAHCIS WGHDFRP YRK+ + L ++PI+A
Sbjct: 122 SLSKQENIDFLRDID----ISFVAVDEAHCISEWGHDFRPEYRKIRQIIGQLGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ ++L +QN V KSSFNRPNLFYE+R K + ++ +K+
Sbjct: 178 LTATATPKVQQDIQKNLQMQNSQVFKSSFNRPNLFYEIRPKK---NELKEIIKYIKSQNG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GI YHAGL+ R++ D ++ QV+VAT+AF
Sbjct: 235 KAGIIYCLSRKKVEEVAETLNVNGIKALPYHAGLDANTRATTQDKFLMEDVQVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRFVIHYDMPKSMEGYYQETGRAGRDGGEGNCIAFYDQKDIDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSK--KSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLL 436
+ S RE ++ K + D+++ K+ G Y +
Sbjct: 352 ---DKPVSEREIGTQILKEVIDYAESSVCRRKQILHYFGESYNE---------------- 392
Query: 437 YYSFHLLKQIPVSLCKNSCDACKHP 461
S C N CD C+ P
Sbjct: 393 ------------SSCSNMCDNCRSP 405
>gi|327303226|ref|XP_003236305.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
gi|326461647|gb|EGD87100.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
Length = 1556
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/409 (41%), Positives = 247/409 (60%), Gaps = 19/409 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + + C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPEKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 997 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1055
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+ R+R + ++ F +Q+L ++F R NR D
Sbjct: 1056 TTHEQKQRQRQMLRHVTQFCENITDCRRAQILAYFDEKFKREDCNRTCD 1104
>gi|386821390|ref|ZP_10108606.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386426496|gb|EIJ40326.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 699
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 223/345 (64%), Gaps = 11/345 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ ++ L+ +FG+ FR Q + I +L+G DC +MPTGGGKS+CYQ+PAL + G+
Sbjct: 3 EETTILNTLKEYFGYDSFRPLQREIIDTILNGNDCLVIMPTGGGKSICYQLPALLQDGLT 62
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPLIALM++QV GL GI FL+S+Q+ + I+ D+++ K ++LLYV PE
Sbjct: 63 IVISPLIALMKDQVDGLNVNGIPACFLNSSQSTAEQEVIFNDIEAKK--IKLLYVAPE-- 118
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+S L+ I S ++L+A+DEAHCISSWGHDFRP+Y +L L+N P+ P++ALTA
Sbjct: 119 ----SLSYLENIFSSTKISLIAVDEAHCISSWGHDFRPAYTQLGFLKNRFPNTPLIALTA 174
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA ++D+ L + N +SF+R NL EVR D + L +
Sbjct: 175 TADKATREDIANQLNISNAKKFVASFDRKNLSLEVRPGT---DRIKQIIQFLNKRPNESG 231
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R T + ++ L G + AYHAG+N RS V +D+I+ + Q+V ATVAFGMG
Sbjct: 232 IVYCLSRKTTESIAEKLQQAGYNAEAYHAGVNHDGRSKVQEDFINDKTQIVCATVAFGMG 291
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
ID+ +VR V H+N+PK++E +YQE GRAGRD LPS +LL++ D
Sbjct: 292 IDKSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSYTLLFHSYAD 336
>gi|443322394|ref|ZP_21051417.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
gi|442787869|gb|ELR97579.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
Length = 701
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 244/391 (62%), Gaps = 18/391 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FGH FR Q I VL+ RD +MPTGGGKS+CYQ+PAL KPG+ LVVSPLI+
Sbjct: 8 LKRFFGHDVFRPLQEQIIAEVLNNRDLLVIMPTGGGKSLCYQLPALLKPGLTLVVSPLIS 67
Query: 90 LMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV LK++GI FL SS + +++++ E L +++LLYV PE + GF
Sbjct: 68 LMQDQVNALKDRGIGATFLNSSLNSQEIQSRSREILQG---NIKLLYVAPERLLSEGFSV 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +I ++ +AIDEAHC+S WG DFRP YR++ LR P VP++ALTATA +V+
Sbjct: 125 FLTQIQQDVGISALAIDEAHCVSEWGQDFRPEYRQIKGLRQRYPQVPMVALTATATTRVR 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+++ L L P V SFNRPNL+YEV KD D Y L +K + IVYCL R
Sbjct: 185 QDIIQQLGLIKPGVYVDSFNRPNLYYEVVSKDKRD--YPQLLKYIKLQQGS-GIVYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E+++ L A GIS YH G++D RS + +I +V+VAT+AFGMGI++ DVR
Sbjct: 242 RRVEEVASRLQADGISSLPYHGGMDDTVRSVYQNRFIGDDVRVMVATIAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++P+++E++YQE GRAGRD + +L++ D R +++++ + ++Q +
Sbjct: 302 FVFHYDLPRNLESYYQEVGRAGRDGERAICVLFFSRGDIRTIDYLIKQKSDPSAQRLA-- 359
Query: 389 ERSSKKSISDFSQV--------LDVAGKRFS 411
R S+ D+++ L G+RFS
Sbjct: 360 -RQGLSSMVDYAESTVCRRKIQLSYFGERFS 389
>gi|288800855|ref|ZP_06406312.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332316|gb|EFC70797.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
Length = 725
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 221/349 (63%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G+ +V+S
Sbjct: 7 LTEKLKQYFGFDTFKGDQEAIIRNLLDGKDSFVLMPTGGGKSLCYQLPSLIMDGVAVVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +++S+ T++ D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEENGVAHYINSSLNKAAITQVMADIRSGKT--KLLYVAPESLI 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
P + LK + ++ AIDEAHCIS WGHDFRP YR + + N + + P++ALTAT
Sbjct: 125 KPENVEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPMINNIGEAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNR NL+YEVR K +D +L +K N I
Sbjct: 181 ATDKVRTDIKKSLGILDAKEFKSSFNRANLYYEVRPK--TNDVDKELIKFIKKNEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +ELSA L A I AAYHAGL++ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 VYCLSRKKVEELSAILQANNIKAAAYHAGLDNIPRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 299 DKPDVRFVVHYDIPKSLEGYYQETGRAGRDGGEGHCLAFYSYKDIQKLE 347
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 245/388 (63%), Gaps = 6/388 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + ++L + L+ +FG+ QFR Q I+A L +D +MPTGGGKS+C+Q+P L P
Sbjct: 8 PGSDFKSLEEALKHYFGYDQFRVGQRPVIEAALQQQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L+ I FL+S+ + ++ SGK ++LLYV P
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGK--IKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F++ L ++ ++ L A+DEAHC+S WGHDFRP YR+L+ +R VP+
Sbjct: 126 ERLLHESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYAQVPVYT 185
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D+++ L L+ P V +SFNRPNL+YEVR K AYADL ++ +G
Sbjct: 186 LTATATERVRQDIIQQLQLRQPFVHVASFNRPNLYYEVRPKS--RQAYADLYREIRQHGQ 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E+SA L GI YHAG++D AR+ + +I QV+VATVAF
Sbjct: 244 DSGIVYCLSRREVNEISARLQGDGIRALPYHAGMSDSARTLNQERFIRDDVQVMVATVAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+N+P+++E +YQE+GRAGRD PSK LL++ D +E+++ +
Sbjct: 304 GMGIDKPDVRFVIHYNLPRNIEGYYQEAGRAGRDGEPSKCLLFFSTKDIHTLEWLIERK- 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVA 406
+ ++ + E + + QV+D A
Sbjct: 363 -VDPETGNPLENEQRIARQQLRQVIDYA 389
>gi|19074536|ref|NP_586042.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
gi|19069178|emb|CAD25646.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
Length = 766
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/439 (39%), Positives = 251/439 (57%), Gaps = 34/439 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +KGI ++S + + +++ L + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIASFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISEKLGKY-MGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQ--KQ 583
Query: 388 RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447
R+R +++ F + + R +VL H ++
Sbjct: 584 RQREDLEAVIQFCE--NKTDCRRMQVLA-------------------------HFGERFD 616
Query: 448 VSLCKNSCDACKHPNLLAK 466
+C+ +CD C+ ++ K
Sbjct: 617 PQMCRKTCDNCRREGVVKK 635
>gi|348506232|ref|XP_003440664.1| PREDICTED: Bloom syndrome protein homolog [Oreochromis niloticus]
Length = 1403
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 239/399 (59%), Gaps = 22/399 (5%)
Query: 5 PLAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRD 55
P + S T KN P H++ + ++K+ FG QFR QL+AI A L G D
Sbjct: 617 PSTICSPEPTFKN-PAHDRFRGFNFPHSQEMMKIFHKRFGLHQFRFNQLEAINAALLGED 675
Query: 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115
F LMPTGGGKS+CYQ+PA G+ +VVSPL +L+ +QV L I LS ++
Sbjct: 676 AFVLMPTGGGKSLCYQLPACVSLGVTVVVSPLKSLIVDQVQKLTTLDIPATSLSGDKSDS 735
Query: 116 VKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174
++IY L P ++LLYVTPE L+A+ +S L+ ++ RGLL IDEAHC+S WG
Sbjct: 736 EASRIYMQLSRKDPIIKLLYVTPEKLSASNRLISALQNLYERGLLARFIIDEAHCVSQWG 795
Query: 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 234
HDFRP Y+KL LR P+V ++ALTATA P+VQKD++ L + P V SFNR NL Y
Sbjct: 796 HDFRPDYKKLHELRQKFPNVAMMALTATATPRVQKDILNQLNMSRPQVFTMSFNRTNLKY 855
Query: 235 EV---RYKDLLDDAYADLCS--VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289
V + K + +D C+ + K IVYCL R CD ++ L G+S +YH
Sbjct: 856 AVLPKKPKKVDED-----CTSWIKKHYPRDSGIVYCLSRNDCDAMAESLQRAGLSALSYH 910
Query: 290 AGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 348
AGL+D R V WI+ QV+ AT+AFGMGID+ DVR V H ++PKSME +YQESGR
Sbjct: 911 AGLSDSDREYVQSKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSMEGYYQESGR 970
Query: 349 AGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
AGRD S +L+Y D +R++ I+S ++ + + +T
Sbjct: 971 AGRDGEISHCILFYSYTDVQRIKRIISMDREGDRHTKAT 1009
>gi|325284946|ref|YP_004260736.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
gi|324320400|gb|ADY27865.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
Length = 733
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG +F+ Q I +L G + F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKKHFGFTKFKGLQESVINNLLKGNNTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS QVK ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLTKTQVK-EVKEDIVNG--VTKLLYVAPESLIKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ L+ + ++ VA+DEAHCIS WGHDFRP YR L ++ L D +P++ LTATA
Sbjct: 129 YVEFLRSVK----ISFVAVDEAHCISEWGHDFRPEYRNLKTIVGKLGDNIPMIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + + K+SFNRPNLFYEVR K + AD+ +K N IVY
Sbjct: 185 PKVQEDIVKNLGIADAKLFKASFNRPNLFYEVRPK--TQNIEADIIRFVKQNVGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GIS YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMS 353
>gi|332849065|ref|XP_003339348.1| PREDICTED: ATP-dependent DNA helicase Q5 [Pan troglodytes]
gi|332849067|ref|XP_003315779.1| PREDICTED: ATP-dependent DNA helicase Q5 [Pan troglodytes]
Length = 435
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/373 (43%), Positives = 234/373 (62%), Gaps = 11/373 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + + + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSK 380
++ F++ K +K
Sbjct: 369 DQVSFLIRKEVAK 381
>gi|402901083|ref|XP_003913486.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Papio anubis]
Length = 991
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRCRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 414 ----AAIAKYFG-----DAPPA-CAKGCDHCQNPMAVRRQLEAL 447
>gi|325954269|ref|YP_004237929.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
gi|323436887|gb|ADX67351.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
Length = 731
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/361 (45%), Positives = 227/361 (62%), Gaps = 17/361 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H K+ L L+ +FG+ QF+ +Q + I+ +L+ +D F LMPTGGGKSMCYQ+PAL G+
Sbjct: 5 HTKD-LSSYLKKYFGYDQFKGQQEEIIKTLLNNQDVFVLMPTGGGKSMCYQLPALMSEGV 63
Query: 81 VLVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
++VSPLIALM+NQV L+ GI+ L+S+ + +D+ +GK ++LYV
Sbjct: 64 AIIVSPLIALMKNQVDALR--GISTNEVAHVLNSSLNKSETKIVMDDIRAGKT--KMLYV 119
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE ++ K + ++ AIDEAHCIS WGHDFRP YR L S+ + + PI
Sbjct: 120 APESLTKEEYIDFFKTVK----ISFFAIDEAHCISEWGHDFRPEYRNLKSIIQKIGNAPI 175
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D+ ++L +Q+ V K SFNRPNLFYEVR K D ++ +K
Sbjct: 176 IALTATATPKVQEDIQKTLGMQDARVFKDSFNRPNLFYEVRPKINQD---KEIVKFIKKR 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+VYCL R +EL+ L GI YHAGL+ K RS D ++ VVVAT+
Sbjct: 233 QGKSGVVYCLSRKKVEELTQLLQVNGIKAIPYHAGLDAKTRSKHQDMFLMEDVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H++IPKS+E++YQE+GRAGRD + + +Y D ++E F+ S
Sbjct: 293 AFGMGIDKPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGECVAFYDYKDIEKLEKFLAS 352
Query: 376 K 376
K
Sbjct: 353 K 353
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/391 (42%), Positives = 240/391 (61%), Gaps = 15/391 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q I+ L+ +D +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 9 LKHFFGYDSFRAGQRKIIEEALNNQDLLVIMPTGGGKSLCFQLPALLKEGLTIVVSPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GI FL+ST E + +GK ++LLYV PE T F S
Sbjct: 69 LMKDQVDALQDNGIGATFLNSTLDYAEGRSRQEAILAGK--IKLLYVAPERLLTEKFRSF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L ++ + LN +AIDEAHC+S WGHDFRP YR+L LR+ P PI A TATA +VQ
Sbjct: 127 LLRVANGLGLNAIAIDEAHCVSEWGHDFRPEYRQLKQLRSQFPQTPIFAFTATATKRVQD 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L++ V +SFNRPNL YEV+ KD + Y L + + +G IVYCL R
Sbjct: 187 DIIQQLGLRDANVHLASFNRPNLHYEVKSKD-KNSYYQLLKDIRRQSG--SGIVYCLSRR 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GI YHAGL + RS ++ +V+VATVAFGMGI++ DVR
Sbjct: 244 RVEEIALKLKHDGIDALPYHAGLEAEVRSHNQTRFLRDDARVIVATVAFGMGINKPDVRF 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V HF++P+S+E+FYQESGRAGRD +KS L++ D +++++++ + N Q + ++
Sbjct: 304 VFHFDLPRSLESFYQESGRAGRDGETAKSTLFFSFGDIKKVDYLIEQKPDPNEQRIARQQ 363
Query: 390 RSSKKSISDFSQVLDVA-GKRFSRVLGNRYW 419
+QV+D A G R + RY+
Sbjct: 364 ---------LNQVIDYAEGTVCRRTIILRYF 385
>gi|449329518|gb|AGE95789.1| ATP-dependent DNA helicase [Encephalitozoon cuniculi]
Length = 766
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/439 (39%), Positives = 251/439 (57%), Gaps = 34/439 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +KGI ++S + + +++ L + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIASFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISEKLRKY-MGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQ--KQ 583
Query: 388 RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIP 447
R+R +++ F + + R +VL H ++
Sbjct: 584 RQREDLEAVIQFCE--NKTDCRRMQVLA-------------------------HFGERFD 616
Query: 448 VSLCKNSCDACKHPNLLAK 466
+C+ +CD C+ ++ K
Sbjct: 617 PQMCRKTCDNCRREGVVKK 635
>gi|255542856|ref|XP_002512491.1| DNA helicase hus2, putative [Ricinus communis]
gi|223548452|gb|EEF49943.1| DNA helicase hus2, putative [Ricinus communis]
Length = 586
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/365 (45%), Positives = 228/365 (62%), Gaps = 6/365 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA KPG+ +VVSPL++L+++
Sbjct: 201 FGNMSFRPLQHQACKASVAKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQD 260
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT + ++L KPS +LLYVTPE + GF+ LK
Sbjct: 261 QIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNLGFLEILK 320
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L L+ DVP++ALTATA V++D+
Sbjct: 321 CLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFRDVPLVALTATATHSVREDI 380
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+++L + N LVL++SF+RPNL YEV K ++ + +LK + C IVYCL +
Sbjct: 381 LKALRIPNALVLETSFDRPNLKYEVIGK--TKESLKQVGQLLKDRFKNQCGIVYCLSKNE 438
Query: 271 CDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C E+S +L+ I YHAGL + R V W +V AT+AFGMGID+ DVR
Sbjct: 439 CIEVSNFLNDKCKIKTVYYHAGLATRQRVEVQRKWHMGEAHIVCATIAFGMGIDKPDVRF 498
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H + KS+E++YQESGRAGRD LP+ + Y D R+ +L Q +SF T
Sbjct: 499 VIHNTLSKSIESYYQESGRAGRDNLPAACIALYQKKDFSRVVCMLRSGQGYKRESFKTAM 558
Query: 390 RSSKK 394
++K
Sbjct: 559 AQAQK 563
>gi|423316589|ref|ZP_17294494.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
gi|405583639|gb|EKB57579.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
Length = 733
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 20/358 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q + I ++L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LSQELKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV + E G+A L+ TQT QV ++D++ GK +LLYV P
Sbjct: 68 PLIALMKNQVDAVNGLSNEDGVAHVLNSSLNRTQTQQV----FDDIEKGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ VAIDEAHCIS WGHDFRP YR L ++ + DVPI+A
Sbjct: 122 ESLIKDEYSDFLKSVK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K +D ++ +
Sbjct: 178 LTATATPKVQDDIQKTLGMSDAKVYKSSFNRPNLYYEVRPKINVD---KEIVKFINQRKG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
GMGID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 295 GMGIDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|449517902|ref|XP_004165983.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/374 (44%), Positives = 231/374 (61%), Gaps = 6/374 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A S +DCF LMPTGGGKS+CYQ+PA +PG+ +V+SPL++L+++
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
Q++ L K GI FL+S QT + ++L KPS +LLYVTPE AT F+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H + L +DEAHC+S WGHDFRP YR L L+ PDVP++ALTATA V++DV+
Sbjct: 316 MHMKKQLASFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDVL 375
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
++L + + L+L+ SF+RPNL YEV K + L +K + C IVYCL ++ C
Sbjct: 376 KALRIPHALILERSFDRPNLKYEVVCK--TKEPLVQLGQFIKERFKNQCGIVYCLSKSEC 433
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
E+S L+ I A YHAGL + R V W Q+V AT+AFGMGID+ DVR V
Sbjct: 434 VEVSETLNKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFV 493
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H + KS+E++YQESGRAGRD P+ ++ Y D R+ +L Q S+SF
Sbjct: 494 IHNTMSKSIESYYQESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESFKMSMS 553
Query: 391 SSKKSISDFSQVLD 404
KK + F ++ D
Sbjct: 554 QGKK-MQQFCELKD 566
>gi|406674061|ref|ZP_11081273.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
gi|405584835|gb|EKB58711.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
Length = 733
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 20/358 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q + I ++L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LSQELKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV + E G+A L+ TQT QV ++D++ GK +LLYV P
Sbjct: 68 PLIALMKNQVDAVNGLSNEDGVAHVLNSSLNRTQTQQV----FDDIEKGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ VAIDEAHCIS WGHDFRP YR L ++ + DVPI+A
Sbjct: 122 ESLIKDEYSDFLKSVK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K +D ++ +
Sbjct: 178 LTATATPKVQDDIQKTLGMSDAEVYKSSFNRPNLYYEVRPKINVD---KEIVKFINQRKG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
GMGID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 295 GMGIDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ 352
>gi|352085481|ref|ZP_08953101.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
gi|351681902|gb|EHA65016.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
Length = 612
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 245/401 (61%), Gaps = 15/401 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + + LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +
Sbjct: 5 KASALDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGI 64
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L+E G+A +L+S+ + + + ++ L +G+ L LLYV PE
Sbjct: 65 VVSPLIALMQDQVDALREAGVAAAYLNSSLSAEAQREVERQLLAGE--LNLLYVAPERLL 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L+ I + L AIDEAHC+S WGHDFRP YR+L+ L P P +ALTAT
Sbjct: 123 TPRFLGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPHAPRIALTAT 178
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P+ +++++E L LQ+ SSF+RPN+ Y V L +A L L+ + I
Sbjct: 179 ADPRTREEIVERLSLQHARQFVSSFDRPNIGYRV---GLRHNAKRQLTEFLQGHQGESGI 235
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGI
Sbjct: 236 VYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGI 295
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S +
Sbjct: 296 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADE 355
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWP 423
R+R ++ + + G R +LG + +V+P
Sbjct: 356 -----RKRVERQKLESLLAYAEATGCRRQLLLGA-FGEVYP 390
>gi|307107282|gb|EFN55525.1| hypothetical protein CHLNCDRAFT_133956 [Chlorella variabilis]
Length = 817
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 242/397 (60%), Gaps = 30/397 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG++ FR +Q I+A LSGRDCF LMPTGGGKS+ YQ+PA+ PG+ +VV+PL++LM++
Sbjct: 283 FGNSSFRSEQRQIIEAALSGRDCFVLMPTGGGKSLTYQLPAVLTPGVTVVVTPLLSLMQD 342
Query: 94 QVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSK 149
QV L G+ +LSS QT+ ++ +L +P+++LLYVTPE L
Sbjct: 343 QVQALTLLPSGGVPTTYLSSQQTVAETRAVFLELGKARPTIKLLYVTPEQLVRGERLKGA 402
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208
L+ +HS GLL + +DEAHC+S+WGHDFRP Y++L ++++ L VP++ALTATA PKV+
Sbjct: 403 LRALHSHGLLARLVVDEAHCVSAWGHDFRPDYKQLGAVKSSCLRGVPMMALTATATPKVR 462
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYK----DLLDDAYADLCSVLKANGDTCAIVY 264
+D+M +L + P + SF RPNL + Y L+ ++ ++ + + IVY
Sbjct: 463 QDIMSTLHMAAPRQFQVSFFRPNLCFRKDYTRSEDSGLEGYMEEMMVYIQNHREGSGIVY 522
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + + AA HAG+ K R V +DW + R QVVVAT+AFGMG+D+
Sbjct: 523 CLSRDNTE-----------TSAAVHAGMTPKQRMQVQNDWRTGRVQVVVATIAFGMGVDK 571
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF + KSME +YQE+GRAGRD P++ LLYY D R+ +L K + QS
Sbjct: 572 ADVRYVIHFTLSKSMEGYYQEAGRAGRDGGPAECLLYYAKRDVPRIVQLLHKGAKRAKQS 631
Query: 385 FSTRERSSKKSISDF---------SQVLDVAGKRFSR 412
F RE K + + +QVL+ G+R+ +
Sbjct: 632 FQ-RELDLLKQMQAYCEDGERCRHAQVLEYFGERWQQ 667
>gi|313223438|emb|CBY40419.1| unnamed protein product [Oikopleura dioica]
Length = 636
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 259/466 (55%), Gaps = 50/466 (10%)
Query: 23 KEALVKLLRWHFGHAQFRDK-QLDAIQAV-LSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
+E + LR FGH+ FR + Q +A++ + L RD F +PTGGGKS+ YQ+PAL PGI
Sbjct: 87 EEDIYAALREKFGHSGFRSQIQEEAVKELCLGDRDAFICLPTGGGKSLIYQLPALLYPGI 146
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLIAL+++Q+ L +K I E ++S + + + I +DL SG P R+LYVTPE
Sbjct: 147 SIVISPLIALIQDQLKALLDKDIRAESINSKLSTEERRAIMDDLYSGVPKTRILYVTPEQ 206
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
T F+ + ++SR L++LVAIDEAHC+S WGHDFRP Y KL LR +P+ +A T
Sbjct: 207 VQTQRFIKLARWMNSRCLIHLVAIDEAHCVSQWGHDFRPDYLKLGLLREIIPNARFVACT 266
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK------ 254
ATA K+++DV L ++ V ++ R NL+Y+V+ KD+L + + L + +
Sbjct: 267 ATATKKIEEDVCRILKMKKCAVFRTGITRENLYYDVKMKDILPNPHKHLANFARECIGKQ 326
Query: 255 ---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+ + IVYC R C+E++ L+ G+ YHAGL + R+ V +DW R V
Sbjct: 327 RPDGSYEGAGIVYCFRRDDCEEMAVSLTRLGVEAEPYHAGLKPETRTRVQEDWTEGRVPV 386
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+ AT++FGMG+D+++VR V H+ +PKS+ + QESGRAGRD PSK LYY +++R +
Sbjct: 387 ICATISFGMGVDKENVRFVAHWTLPKSLAGYLQESGRAGRDNKPSKCRLYYSREEQRSLI 446
Query: 372 FILSKNQSKNSQSFSTRERSSKK---------SISDFSQVLDVAGKRFSRVLGNRYWDVW 422
FI+ K + E++ KK S++ + + D + ++ G D
Sbjct: 447 FIIKKPLMWKKKDIGNAEQNKKKVMIQLRQFESVTKYCEATDCRHRTMAKFFGENTDD-- 504
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYL 468
CK +CD C + +A+ L
Sbjct: 505 ----------------------------CKTNCDGCTNKVQVAREL 522
>gi|193786741|dbj|BAG52064.1| unnamed protein product [Homo sapiens]
Length = 435
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/417 (41%), Positives = 248/417 (59%), Gaps = 14/417 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGNTIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGK--RFSRVLGNRYWDVW 422
++ F++ K +K + + S K +I F ++ + R+ R G W
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGRWGRGHGKSLRAAW 424
>gi|431795569|ref|YP_007222473.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786334|gb|AGA76463.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 725
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 215/343 (62%), Gaps = 8/343 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG QFR Q + +L G + F +MPTG GKS+CYQ+PA+ K G +V+SPLIA
Sbjct: 9 LKKIFGFNQFRGNQEAIVDNILQGNNTFVIMPTGAGKSLCYQLPAVTKEGTAIVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI FL+ST + K+ +++ SG + +LLYV PE +
Sbjct: 69 LMKNQVDQLNAFGINAHFLNSTLSKTETNKVKKEVLSG--ATKLLYVAPESLTKEENVEF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQ 208
LK L+ VAIDEAHCIS WGHDFRP YRK+ S+ + D +PI+ALTATA PKVQ
Sbjct: 127 LKSAQ----LSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDALPIIALTATATPKVQ 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ +L ++ + KSSFNR NLFYEVR K D L +K+ I+YCL R
Sbjct: 183 QDIQRNLNMEEADLFKSSFNRTNLFYEVRPK-AKSDTKKHLIKYVKSQKGKSGIIYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L GI+ A YHAGL R DD+++ VVVAT+AFGMGID+ DVR
Sbjct: 242 KKVEEIAELLKVNGINAAPYHAGLESAMRIKNQDDFLNEEVDVVVATIAFGMGIDKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 302 YVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYEDIVKLE 344
>gi|163756913|ref|ZP_02164021.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
gi|161323149|gb|EDP94490.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
Length = 732
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 227/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG QF+ Q + I++++S ++ F +MPTGGGKS+CYQ+PAL K G +VVS
Sbjct: 8 LYKELKKHFGFGQFKGLQEEVIKSIISNKNTFVIMPTGGGKSLCYQLPALMKEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV L+ + GIA L+S+ T ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDALRGISSQDGIA-HVLNSSLTKAETRQVKEDITNG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
++ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LT
Sbjct: 125 TKEENVAFLRTVQ----ISFMAVDEAHCISEWGHDFRPEYRNLKNIIGKIGDNIPIIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YEVR K D AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGMTDANTFKASFNRPNLYYEVRPK--TKDVDADIIRFIKQNQGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 239 GIVYCLSRKRVEELAQVLQVNGINAVPYHAGLDPKKRAKHQDMFLMEDCDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS 353
>gi|356533550|ref|XP_003535326.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like
1-like [Glycine max]
Length = 612
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/366 (45%), Positives = 229/366 (62%), Gaps = 8/366 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A L+ +D F LMPTGGGKS+CYQ+PA +PG+ +VVSPL++L+++
Sbjct: 206 FGNRTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQD 265
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT T + ++L KPS +LLYVTPE + F+ LK
Sbjct: 266 QIITLNLKFGIPSTFLNSQQTASQVTAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILK 325
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L SL+ + PDVP++ALTATA V++D+
Sbjct: 326 FMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKLHFPDVPVMALTATATHAVREDI 385
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+++L + + LVL+ SF+RPNL YEV + K+ L L + + C IVYCL ++
Sbjct: 386 LKALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLIDRFR---NQCGIVYCLSKS 442
Query: 270 TCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C E+S +L+ I YHAGL + R +V W +V AT+AFGMGID+ DVR
Sbjct: 443 ECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATIAFGMGIDKPDVR 502
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H + KS+E++YQESGRAGRD PS + Y D R+ ++ Q +SF T
Sbjct: 503 FVIHNTMSKSIESYYQESGRAGRDNFPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTA 562
Query: 389 ERSSKK 394
+KK
Sbjct: 563 MAQAKK 568
>gi|328707887|ref|XP_001947908.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1128
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 218/351 (62%), Gaps = 3/351 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ + + FG FR Q +AI A L G +CF LMPTGGGKS+CYQ+PA+ GI +V+S
Sbjct: 386 LLAVFKKTFGLRHFRPNQFEAINAALLGHNCFILMPTGGGKSLCYQLPAVILKGITVVIS 445
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q LK I L S+ T + IY +L P L+LLYVTPE + A+
Sbjct: 446 PLKSLIIDQTQKLKSLDIPAAHLLSSITPDEENTIYSELWGADPGLKLLYVTPEKVAASN 505
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L +H R LL + IDEAHC+S WGHDFRP Y++L + +VPI+ALTATA
Sbjct: 506 KLIQVLNNLHCRNLLARIVIDEAHCVSQWGHDFRPDYKRLGVFKQNYQNVPIMALTATAT 565
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+KDV+ L ++ SSFNRPNL YEV K + ++ ++K+ I+
Sbjct: 566 QRVRKDVLHQLNIEETKWFVSSFNRPNLVYEVIPKKG-KSSLLEIAKLIKSKFARQSGII 624
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ + CD + ++S GI +YHAGL DK R+ V W S++ VV AT+AFGMGID
Sbjct: 625 YCMTKKECDNTAIFMSGEGIKAVSYHAGLTDKKRNDVQMQWTSNKSNVVCATIAFGMGID 684
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
+ DVR V H+++P+S+E FYQESGRAGRD + L+YY D R++ ++
Sbjct: 685 KPDVRYVIHYSLPQSIEGFYQESGRAGRDGDVAYCLIYYNYSDMHRIKKLI 735
>gi|449454038|ref|XP_004144763.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/374 (44%), Positives = 231/374 (61%), Gaps = 6/374 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A S +DCF LMPTGGGKS+CYQ+PA +PG+ +V+SPL++L+++
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
Q++ L K GI FL+S QT + ++L KPS +LLYVTPE AT F+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H + L +DEAHC+S WGHDFRP YR L L+ PDVP++ALTATA V++DV+
Sbjct: 316 MHMKKQLAGFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDVL 375
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
++L + + L+L+ SF+RPNL YEV K + L +K + C IVYCL ++ C
Sbjct: 376 KALRIPHALILERSFDRPNLKYEVVCK--TKEPLVQLGQFIKERFKNQCGIVYCLSKSEC 433
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
E+S L+ I A YHAGL + R V W Q+V AT+AFGMGID+ DVR V
Sbjct: 434 VEVSETLNKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFV 493
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H + KS+E++YQESGRAGRD P+ ++ Y D R+ +L Q S+SF
Sbjct: 494 IHNTMSKSIESYYQESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESFKMSMS 553
Query: 391 SSKKSISDFSQVLD 404
KK + F ++ D
Sbjct: 554 QGKK-MQQFCELKD 566
>gi|422015295|ref|ZP_16361894.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
gi|414099460|gb|EKT61101.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
Length = 608
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 234/375 (62%), Gaps = 16/375 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L FG+ FR Q I+A+L RD LMPTGGGKS+CYQ+PAL K G+ LVVSPLI
Sbjct: 16 ILNSTFGYQSFRPGQEAVIRAILDNRDSLVLMPTGGGKSLCYQVPALVKDGVTLVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ GI L+S+QT Q + ++ + G +L+LLYV PE T F+S
Sbjct: 76 SLMKDQVDQLRLHGINAACLNSSQTPQEQREVMDSCAQG--NLKLLYVAPERLLTDYFLS 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + + L+A+DEAHCIS WGHDFRP YR L LR + PDVP++ALTATA +
Sbjct: 134 QLANWN----IALLAVDEAHCISQWGHDFRPEYRALGQLRQHFPDVPVMALTATADETTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D++ L L NPLV SSF+RPN+ Y + +YK L L +KA IVYC
Sbjct: 190 ADIIRLLALDNPLVQVSSFDRPNIRYTLVEKYKPL-----EQLWFFIKAQKGKAGIVYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E + L G+S AAYHAGL+ + R V D ++ Q+VVATVAFGMGI++ +
Sbjct: 245 SRNKVEETAERLQKRGLSVAAYHAGLDSQQREWVQDAFLKDNLQIVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q
Sbjct: 305 VRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGVQQDI- 363
Query: 387 TRERSSKKSISDFSQ 401
ER +I+ F++
Sbjct: 364 --ERHKLNAIAAFAE 376
>gi|126661004|ref|ZP_01732090.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
gi|126617703|gb|EAZ88486.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
Length = 710
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/433 (39%), Positives = 249/433 (57%), Gaps = 40/433 (9%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L++ FG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 12 LKYFFGYDQFRSGQKQIINEALNDKDLLIIMPTGGGKSLCFQLPALLKSGVCVVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L + GI FL+ST + + GK ++L+YV PE F++
Sbjct: 72 LMQDQVDALLDNGIGATFLNSTLNREELQSRENAILKGK--IKLVYVAPERLLNDNFLNF 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L + + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP+ ALTATA +V+
Sbjct: 130 LDFLKQKVGLSAFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPKVPMFALTATATKRVRA 189
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++E L LQNP V +SF+RPNL+YEV+ K +Y L + ++ N + I+YCL R
Sbjct: 190 DIIEQLGLQNPTVHVASFDRPNLYYEVQQKS--RRSYTQLLNYIR-NQEGSGIIYCLSRK 246
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++ L GI YHAG+ D R++ +I +++VAT+AFGMGI++ DVR
Sbjct: 247 NVETIALRLQQDGIDALPYHAGMYDDERATNQTRFIRDDVRIIVATIAFGMGINKPDVRF 306
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++P+++E++YQESGRAGRD P+ L++ D +R+E+++ + + Q ++
Sbjct: 307 VVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQRVGRQQ 366
Query: 390 RSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPV 448
QV+D A G R S+VL Y+ Q
Sbjct: 367 ---------LRQVVDYAEGTECRR-------------------SIVLRYFG-----QQYK 393
Query: 449 SLCKNSCDACKHP 461
C N CD CKHP
Sbjct: 394 GKCDN-CDNCKHP 405
>gi|432104137|gb|ELK30964.1| ATP-dependent DNA helicase Q5 [Myotis davidii]
Length = 410
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/379 (43%), Positives = 232/379 (61%), Gaps = 12/379 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THRASPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +V+SPLIAL+++QV L + L+S Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVISPLIALIQDQVDHLLALKVQVRSLNSKLPAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 AHAPCVALTATATPQVREDVFAALHLKQPVAAFKTPCFRANLFYDVQFKELLSDPYGNLR 242
Query: 251 SV-LKANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301
LKA G C I+YC R C++L+ L G+S AYHAGL R+ V
Sbjct: 243 DFCLKALGQKAGKGVLSGCGIIYCRTREACEQLAIELGYRGLSAKAYHAGLKASERTLVQ 302
Query: 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
++W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LY
Sbjct: 303 NEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
Query: 362 YGMDDRRRMEFILSKNQSK 380
Y DR ++ F++ K +K
Sbjct: 363 YSRSDRDQVSFLIRKEVAK 381
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 232/369 (62%), Gaps = 20/369 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q +++++S + F +MPTGGGKS+CYQ+PAL + G+ +VVS
Sbjct: 8 LHKELKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQEGVAIVVS 67
Query: 86 PLIALMENQVIGLKEKG-------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV L+ G + L+ T+ QVK +D+ SG +LLYV P
Sbjct: 68 PLIALMKNQVDALRSLGSGDAIAHVLNSSLNKTEINQVK----KDIASG--FTKLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E ++ LK+ H ++ VAIDEAHCIS WGHDFRP YR L ++ L ++PI+
Sbjct: 122 ESLTKEEYIDFLKE-HK---ISFVAIDEAHCISEWGHDFRPEYRNLRNIIRALGEIPIIG 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D++++L + + V K+SFNRPNLFYEVR K + AD+ +K +
Sbjct: 178 LTATATPKVQEDILKNLEMSDANVFKASFNRPNLFYEVRTK--TKNVEADIIRFIKQHKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AF
Sbjct: 236 KSGVIYCLSRKKVEEIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKN 377
GMGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K
Sbjct: 296 GMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMAGKP 355
Query: 378 QSKNSQSFS 386
++ F+
Sbjct: 356 IAEQEVGFA 364
>gi|351707850|gb|EHB10769.1| ATP-dependent DNA helicase Q5 [Heterocephalus glaber]
Length = 989
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 179/450 (39%), Positives = 262/450 (58%), Gaps = 36/450 (8%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPL
Sbjct: 20 LKKVFGFDSFKTPLQERATMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 79
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S +MQ + ++ DL+ KP +LLY+TPE+ A+ F
Sbjct: 80 IALIQDQVDHLLALKVQVSSLNSKLSMQERKELLSDLEQEKPQTKLLYITPEMAASTSFQ 139
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA +V
Sbjct: 140 PILSSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATRQV 199
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT------ 259
Q+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LKA G
Sbjct: 200 QEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLRDFCLKALGQKTDKGLS 259
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYC R +C++L+ LS+ G++ AYHAGL R+ V ++W+ + V+VAT++F
Sbjct: 260 GCGIVYCRTRESCEQLAIELSSRGVNAKAYHAGLKASDRTQVQNEWMEEKIPVIVATISF 319
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K
Sbjct: 320 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIKKEV 379
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYY 438
+K + + S K ++ F ++ F LG R+ + + Y+
Sbjct: 380 AKLQEKRGNKS-SDKATLLAFDALVT-----FCEELGCRH-------------AAIAKYF 420
Query: 439 SFHLLKQIPVSLCKNSCDACKHPNLLAKYL 468
P + C CD C++P + + L
Sbjct: 421 G-----DAPPA-CTKGCDHCQNPAAVRRQL 444
>gi|427717685|ref|YP_007065679.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
gi|427350121|gb|AFY32845.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
Length = 720
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/400 (41%), Positives = 251/400 (62%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ +FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDRFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E + +G+ ++LLYV PE +
Sbjct: 67 PLIALMQDQVESLRNNNISATFLNSSLNAYKVRSR-EEAILNGR--VKLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L I+ + ++ AIDEAHC+S WGHDFRP YR+L SLR PD+P +ALTATA
Sbjct: 124 RFLPFLDLINHQIGISSFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDIPTVALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YE+R K AYA+L +++ + AIVY
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEIRSKTKY--AYAELLELIRET-EGSAIVY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L ++ YHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKVAALPYHAGLSDEERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTVFFSFGDIKTIEWSIDQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQVLDVA--------GKRFSRVLGN 416
+ + + + D+++ D G+RF GN
Sbjct: 361 IA---KQQLRQMIDYAEGTDCRRTIQLGYFGERFPGNCGN 397
>gi|340618927|ref|YP_004737380.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
gi|339733724|emb|CAZ97101.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
Length = 736
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 230/370 (62%), Gaps = 24/370 (6%)
Query: 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
K+K + ++ L L+ HFG ++F+ Q I +L + F +MPTGGGKS+CYQ+PAL
Sbjct: 3 KDKKVLKETDLHASLKKHFGFSEFKGLQQAVITNILERNNTFAIMPTGGGKSLCYQLPAL 62
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEF---------LSSTQTMQVKTKIYEDLDS 126
+ G +VVSPLIALM+NQV ++ G++ +F L+ T+ QVK ED+ +
Sbjct: 63 MQDGTAIVVSPLIALMKNQVDAIR--GVSDQFGIAHVLNSSLTKTEVRQVK----EDITN 116
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
G +LLYV PE ++ L+ + L+ +A+DEAHCIS WGHDFRP YR L +
Sbjct: 117 G--ITKLLYVAPESLTKEDYIDFLQSVK----LSFIAVDEAHCISEWGHDFRPEYRNLRT 170
Query: 187 LRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDA 245
+ N L D +PI+ALTATA PKVQ+D++++L + + K+SFNRPNLFYEVR K D+
Sbjct: 171 IVNRLDDDIPIIALTATATPKVQEDIIKNLGITDAQTYKASFNRPNLFYEVRPKTANVDS 230
Query: 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
D+ +K N I+YCL R +EL+ L G+S YHAG + K RS D ++
Sbjct: 231 --DIIRFVKKNAGKSGIIYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFL 288
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
VVVAT+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y
Sbjct: 289 MEDVDVVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDDGEGHCLAFYSYK 348
Query: 366 DRRRMEFILS 375
D ++E +S
Sbjct: 349 DIEKLEKFMS 358
>gi|348551294|ref|XP_003461465.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Cavia porcellus]
Length = 989
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 263/469 (56%), Gaps = 36/469 (7%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSTPSDPERRVRSTLKKVFGFDSFKTPLQERATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +V+SPL+AL+++QV L + LSS ++Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVISPLLALIQDQVDHLLALKVQVSSLSSKTSVQEKKELLSDLEREKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPILSSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA--- 247
P LALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y
Sbjct: 183 VHAPCLALTATATPQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLR 242
Query: 248 DLC-SVLKANGDT----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
D C L D C IVYC R C++L+ LS+ G++ AYHAGL R+ V +
Sbjct: 243 DFCRKALGQKTDKMLSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASDRTQVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVW 422
DR ++ F++ K +K +E+ KS + + A F G R+
Sbjct: 363 SRIDRDQVSFLIRKEVAK------LQEKRGNKSFDKATLLAFDALVTFCEAQGCRH---- 412
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C++P + + L L
Sbjct: 413 ---------AAIAKYFG-----DAPPA-CSKGCDYCQNPAAVQRQLDAL 446
>gi|312373074|gb|EFR20899.1| hypothetical protein AND_18334 [Anopheles darlingi]
Length = 1384
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 219/357 (61%), Gaps = 4/357 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + + FG FR QL I A L GRDCF LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 591 LQMVFKETFGLRTFRPNQLQVINATLLGRDCFVLMPTGGGKSLCYQLPALLTTGVTIVVS 650
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I LS M +IY+DL S P L+LLYVTPE ++++
Sbjct: 651 PLKSLILDQVQKLNTLDIPAGSLSGEAQMADVQRIYDDLYSSCPVLKLLYVTPEKISSSA 710
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F + L +H R L + IDEAHC+S+WGHDFRP Y++L LR PDVPI+ALTATA
Sbjct: 711 KFQNLLSALHRRRQLGRIVIDEAHCVSAWGHDFRPDYKRLYMLREQFPDVPIIALTATAN 770
Query: 205 PKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAI 262
+V+ DV+ L LQ + SSFNRPNL Y V K ++ +++KA I
Sbjct: 771 TRVRMDVITQLKLQPDTRWFLSSFNRPNLKYLVLPKKGAS-TKGEMINLIKAKFARDTGI 829
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL + CD+L+ GI +YHAGL D R + +WI R +VV AT+AFGMGI
Sbjct: 830 VYCLSKKECDQLATDFRKAGIKAKSYHAGLTDTIREATQKEWIGDRIKVVCATIAFGMGI 889
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
D+ DVR V H+ +PKS+E +YQESGRAGRD + +LYY D +R ++ + S
Sbjct: 890 DKPDVRYVLHYCMPKSIEGYYQESGRAGRDGEIATCILYYNYSDMQRYRKMMDNDTS 946
>gi|355672742|gb|AER95092.1| Bloom syndrome, RecQ helicase-like protein [Mustela putorius furo]
Length = 843
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 225/373 (60%), Gaps = 7/373 (1%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 73 HTKE-MMKIFHXKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 131
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 132 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 191
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 192 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 251
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 252 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 311
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V W++ QV+ AT+AF
Sbjct: 312 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWVNQDGCQVICATIAF 371
Query: 319 GMGIDRKDVRLVCHF----NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 372 GMGIDKPDVRFVIHASLPKSVPKSVEGYYQESGRAGRDGETSHCLLFYTYHDVTRLKRLI 431
Query: 375 SKNQSKNSQSFST 387
+ N + T
Sbjct: 432 LMEKDGNHHTRET 444
>gi|372223763|ref|ZP_09502184.1| RecQ familyATP-dependent DNA helicase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 733
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 222/356 (62%), Gaps = 16/356 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +QF+ Q I +L D F +MPTGGGKS+CYQ+PAL K G +VVS
Sbjct: 8 LQEALKKYFGFSQFKGLQEQVISNILGDNDTFVIMPTGGGKSLCYQLPALMKEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E+GIA SS ++K K+ D+ +G +LLYV PE L
Sbjct: 68 PLIALMKNQVDAIRGVSSEEGIAHVLNSSLNKTEIK-KVKSDITNG--VTKLLYVAPESL 124
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
T + + ++ VA+DEAHCIS WGHDFRP YR L + + L D +PI+ L
Sbjct: 125 TKEENI-----EFFNGVTISFVAVDEAHCISEWGHDFRPEYRNLRKIISRLGDNIPIIGL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ+D++++L + + V K+SFNRPNLFYEVR K + AD+ +K N
Sbjct: 180 TATATPKVQEDIIKNLGMVDAKVFKASFNRPNLFYEVRPK--TKNVDADIIRFVKQNSGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R +EL+ L GIS YHAG + K R+ D ++ VVVAT+AFG
Sbjct: 238 SGIVYCLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRAKYQDMFLMEDVDVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
MGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 298 MGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDVEKLEKFMS 353
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 154/347 (44%), Positives = 225/347 (64%), Gaps = 9/347 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ FG++QFR +Q I ++L+GR+ F +MPTG GKS+CYQ+PA+ G +V+
Sbjct: 11 TLRERLKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPAIVSEGTAVVI 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM+NQV L GI +FL+ST + K+ +D +G +L+LLY+ PE
Sbjct: 71 SPLIALMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLNG--TLKLLYIAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ LKK + ++ VAIDEAHCIS WGHDFRP YRK+ + + + ++P++ALTATA
Sbjct: 129 ENLDFLKKAN----ISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D+ ++L +++ + K+SFNR NL+YE+R K DA L +K N I+Y
Sbjct: 185 PKVQQDIQKNLQMEDANLYKTSFNRKNLYYEIRPKV---DAKKQLIKYIKQNKGKSGIIY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R T +E++ L + YHAGL+ R + D +++ V+ AT+AFGMGID+
Sbjct: 242 CLSRKTVEEIAELLRVNDVKALPYHAGLDPVTRMNNQDAFLNEDVDVICATIAFGMGIDK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H++ PKS+E +YQE+GRAGRD L L++Y DD ++E
Sbjct: 302 PDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYSFDDIVKLE 348
>gi|148236484|ref|NP_001079095.1| Bloom syndrome protein homolog [Xenopus laevis]
gi|17366056|sp|Q9DEY9.1|BLM_XENLA RecName: Full=Bloom syndrome protein homolog; Short=xBLM; AltName:
Full=RecQ helicase homolog
gi|11120568|gb|AAG30928.1|AF307841_1 Bloom's syndrome-like protein [Xenopus laevis]
Length = 1364
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 223/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P PG+
Sbjct: 603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGV 661
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 662 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEK 721
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP++AL
Sbjct: 722 VCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMAL 781
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+KD++ L + P + SFNR NL YEV K A + + K + +
Sbjct: 782 TATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPND 841
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL D R V WI+ QV+ AT+AF
Sbjct: 842 SGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAF 901
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ +
Sbjct: 902 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEK 961
Query: 379 SKNSQSFST 387
NS + T
Sbjct: 962 DGNSHTKQT 970
>gi|86140388|ref|ZP_01058947.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85832330|gb|EAQ50779.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 733
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 224/354 (63%), Gaps = 20/354 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q D I++++ G+ F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEDVIKSIIEGKHTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 71
Query: 90 LMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
LM+NQV L KE GIA SS ++K ++ ED+ +G +LLYV PE LT
Sbjct: 72 LMKNQVDALRGISKENGIAHVLNSSLNKGEIK-QVKEDIANG--ITKLLYVAPESLTKEE 128
Query: 145 G--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTA 201
F+ K ++ VAIDEAHCIS WGHDFRP YR L + + D+PI+A+TA
Sbjct: 129 NVEFLRSQK-------ISFVAIDEAHCISEWGHDFRPEYRNLRQIIKRIGDDIPIIAVTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+M++L + K+SFNRPNL+YE+R K + AD+ +K N
Sbjct: 182 TATPKVQEDIMKNLGMSGANAFKASFNRPNLYYEIRPK--TKNVDADIIRFVKQNQGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L GIS YHAGL+ K+R D ++ VVVAT+AFGMG
Sbjct: 240 IIYCLSRKRVEELAQVLQVNGISAVPYHAGLDAKSRVKHQDMFLMEDVDVVVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMS 353
>gi|317471202|ref|ZP_07930570.1| ATP-dependent DNA helicase RecQ [Anaerostipes sp. 3_2_56FAA]
gi|316901308|gb|EFV23254.1| ATP-dependent DNA helicase RecQ [Anaerostipes sp. 3_2_56FAA]
Length = 616
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 236/380 (62%), Gaps = 14/380 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +FG FR+ Q I AVL GRD +MPTG GKS+C+QIPAL PGI LVVSPLI
Sbjct: 7 LLKQYFGFDDFREGQKPLIDAVLDGRDVLGIMPTGAGKSLCFQIPALMMPGITLVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L + GI FL+S+ +M K + G+ +++YV PE T GF
Sbjct: 67 SLMKDQVGALNQAGIHAAFLNSSLSMGQYRKALDLAREGR--YKIIYVAPERLETEGF-- 122
Query: 149 KLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
L+ S G+ ++ +A+DEAHC+S WG DFRPSY K+ S LP P+L A TATA +
Sbjct: 123 -LRFALSPGVDISFLAVDEAHCVSQWGQDFRPSYLKILSFLEKLPRRPVLGAYTATATVE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCAI 262
V++DV++ L L++PLV+ + F+R NLF+ V+ D Y +L S L+ + + I
Sbjct: 182 VKEDVLDILNLRDPLVVTTGFDRANLFFGVKKPR---DKYRELESYLREKEEKMPGSSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R + +E+ L G S YHAGL+D R DD+I R+Q++VAT AFGMGI
Sbjct: 239 VYCLSRKSVEEVCYQLREAGFSVTRYHAGLSDTERRENQDDFIYDRRQIMVATNAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LY+G D+R F++ +
Sbjct: 299 DKPDVRFVIHYNMPKNMESYYQEAGRAGRDGEPAECILYFGAADQRTNRFLIEHGEDNQE 358
Query: 383 QSFSTRERSSKKSISDFSQV 402
TR +K + Q+
Sbjct: 359 LDEETRRIVMEKDLGRLKQM 378
>gi|197120051|ref|YP_002140478.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
gi|197089411|gb|ACH40682.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
Length = 599
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 220/340 (64%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L FG FR Q + ++ VLSGRD F LMPTGGGKS+CYQ+PAL PG LV+SP
Sbjct: 6 IQILNDVFGFKSFRSPQQEIVETVLSGRDAFVLMPTGGGKSLCYQVPALCFPGTALVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E GI+ +S ++ L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K++ ++L AIDEAHC+S WGHDFRP Y +L LR P++P++ALTATA +
Sbjct: 124 LERIKQLP----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L LQ + F+RPN+ Y V K+ ++ L L + D IVY L
Sbjct: 180 TRGDILSRLGLQGATCYCAGFDRPNIRYSVIDKN---KPFSQLTGFLSSRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A GI AAYHAGL DK R V D ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAKKLCAAGIKAAAYHAGLPDKERHRVQDAFLKDDIKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGD 336
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 164/364 (45%), Positives = 226/364 (62%), Gaps = 26/364 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG +QF+ Q I++++S D F +MPTGGGKS+CYQ+PAL K G
Sbjct: 8 LHEQ------LKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKDG 61
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLR 132
+VVSPLIALM+NQV L+ ++GIA L+ T+ QVK LD +
Sbjct: 62 TAIVVSPLIALMKNQVDALRSISSQEGIAHVLNSSLNKTEINQVK------LDITNGVTK 115
Query: 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYL 191
LLYV PE ++ LK+ ++ +AIDEAHCIS WGHDFRP YR L + +
Sbjct: 116 LLYVAPESLTKDEYVDFLKE----QTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIG 171
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251
D+PI+ LTATA PKVQ+D++++L + N K+SFNRPNL+YEVR K + ++D+
Sbjct: 172 DDIPIIGLTATATPKVQEDILKNLNMSNANTFKASFNRPNLYYEVRPK--TKEVFSDIIR 229
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+K I+YCL R + +EL+ L GIS YHAGL+ K R+ D ++ V
Sbjct: 230 FIKKRTGKSGIIYCLSRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDV 289
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VVAT+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 290 VVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYAYKDIEKLE 349
Query: 372 FILS 375
+S
Sbjct: 350 KFMS 353
>gi|431908771|gb|ELK12363.1| ATP-dependent DNA helicase Q5 [Pteropus alecto]
Length = 991
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 186/484 (38%), Positives = 272/484 (56%), Gaps = 40/484 (8%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THHSFPFDREHRVQSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP
Sbjct: 63 LPALLTKGITVVVSPLIALIQDQVDHLLALKVQVSSLNSKLSAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAAAASFQPTLNSLVSRRLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P +ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D + +L
Sbjct: 183 AHAPCVALTATATPQVQEDVFAALHLKQPVAAFKTPCFRANLFYDVQFKELLFDPFGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
+KA G C IVYC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCIKALGQKADKRLSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKASERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVW 422
+DR ++ F++ K +K + + S K + F ++ F LG R+
Sbjct: 363 SRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKSAFLAFDALVT-----FCEELGCRH---- 412
Query: 423 PVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFS 482
+ + Y+ P + C CD C++P + K L A+ Q++ +S
Sbjct: 413 ---------AAIAKYFG-----DAPPT-CTRGCDHCQNPAAVQKQL----DALEQRSSWS 453
Query: 483 QIFI 486
+ I
Sbjct: 454 KTCI 457
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 162/400 (40%), Positives = 245/400 (61%), Gaps = 22/400 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ +G+ FR +Q I+ V+ +DC LMPTG GKS+CYQ+PA+ PG+ LV+SP
Sbjct: 4 IDVLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLVISP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATP 144
LIALM++QV L E GI FL+ST M + + Y + K ++LLYV PE + T
Sbjct: 64 LIALMKDQVDALNEIGIPAAFLNST--MDISEQRYVSDQAMKGGIKLLYVAPERLFSGTH 121
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK+++ L+LVA+DEAHC+S WGHDFRP Y KL +LR PD P LALTATA
Sbjct: 122 PLVNALKEMN----LSLVAVDEAHCVSQWGHDFRPEYLKLGALRKAFPDTPFLALTATAD 177
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ +KD+ L L P SSF+RPN+ Y V L D + L L+ + IVY
Sbjct: 178 KQTRKDISARLHLNKPEWFISSFDRPNITYRV---TLRSDGFGKLVDFLQHRPNDAGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + + +A L+A G S YHAGL+ + R + +I +++VAT+AFGMGID+
Sbjct: 235 CLSRKSVENTAAKLNANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H N+P+++E++YQE+GRAGRD LP ++LL+Y + D ++ ++ +S +++
Sbjct: 295 SNVRFVVHTNMPQNIESYYQETGRAGRDGLPGEALLFYSLGDSITLKRMI---ESADNEE 351
Query: 385 FSTRERSSKKSISDFSQ--------VLDVAGKRFSRVLGN 416
+ ++ ++ F Q +L G+++S+ GN
Sbjct: 352 YVRHMKAKMDTMVAFCQTKSCRRKYLLGYFGEKYSQDCGN 391
>gi|307132960|ref|YP_003884976.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
gi|306530489|gb|ADN00420.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
Length = 614
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
ST+ L+++ +++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+C
Sbjct: 2 STADVLNADVLNKETLAMQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLC 61
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQIPAL G+ LVVSPLI+LM++QV L+ G+A L+STQT + + ++ G+
Sbjct: 62 YQIPALVLEGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGE- 120
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
L+LLY+ PE T GF+ +L ++ L+AIDEAHCIS WGHDFRP YR L ++
Sbjct: 121 -LKLLYIAPERLTTDGFLEQLTHWNT----TLIAIDEAHCISQWGHDFRPEYRALGQIKQ 175
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 247
LP +PI+ALTATA ++D+ L L++PL+ SSF+RPN+ Y + ++K L
Sbjct: 176 QLPALPIVALTATADETTRQDIARLLDLRDPLINISSFDRPNIRYTLVEKFKPL-----D 230
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
L ++ IVYC R ++L A L G+S AYHAGL++ RS V + ++
Sbjct: 231 QLWLFVQGQRGKSGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRD 290
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
QVVVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y
Sbjct: 291 DLQVVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFY 345
>gi|366995175|ref|XP_003677351.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
gi|342303220|emb|CCC70998.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
Length = 989
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 229/355 (64%), Gaps = 10/355 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
L F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 342 LHHTFKLPGFRPNQLEAINSTLSGKDVFVLMPTGGGKSLCYQLPAVVKSGRTKGTTIVIS 401
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L + I +SS T Q + + + G L L+Y++PE+ +A+
Sbjct: 402 PLISLMQDQVAHLLDLNIKASMISSKGTTQQRKQTFNLFVKG--LLDLIYISPEMISASK 459
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ ++ +G L + +DEAHC+SSWGHDFRP Y++L+ +N P++P++ALTATA
Sbjct: 460 QCKRAIQTLYQQGKLARIVVDEAHCVSSWGHDFRPDYKQLNFFKNEYPNIPMMALTATAN 519
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+KD++++L L++PL LK SFNR NLFYEVR K D ++ +K I+
Sbjct: 520 EHVRKDIIQNLQLRSPLFLKQSFNRINLFYEVRKK--TKDCMVEIADAIKFQFTGQSGII 577
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C+++SAYL + I YHAG++ R + DW +++ QV+ ATVAFGMGID
Sbjct: 578 YCHSKNSCEQVSAYLQSKQIRSGFYHAGMDANERLMIQQDWQANKLQVICATVAFGMGID 637
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
+ DVR V HF +P+++E +YQE+GRAGRD PS + YY D R ++ ++ +++
Sbjct: 638 KPDVRFVYHFTVPRTLEGYYQETGRAGRDGKPSYCITYYSFKDVRTIQKMIQRDK 692
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 155/352 (44%), Positives = 222/352 (63%), Gaps = 9/352 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K L K L+ FG+ QFR Q IQ +L G++ F +MPTG GKS+CYQ+PA+ + G
Sbjct: 2 IEQKINLKKTLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLIALM+NQV L GI FL+ST + K+ + + +G + +LLYV PE
Sbjct: 62 TAIVISPLIALMKNQVDQLNAVGINASFLNSTLSKSESNKVKKSVLAG--NTKLLYVAPE 119
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
P + L K + L+ +AIDEAHCIS WGHDFRP YR++ + + L D+PI+AL
Sbjct: 120 SLTKPENLDFLAKAN----LSFIAIDEAHCISEWGHDFRPEYRRIRFIVDSLGDLPIIAL 175
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ+D+ ++L +++ V K+SFNR NL+YEVR K + L LK
Sbjct: 176 TATATPKVQQDIQKNLHMEDANVFKTSFNRQNLYYEVRPKT---NVKKQLIKYLKGKKGQ 232
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R +E+ +L I YHAGL+ R D +++ ++VAT+AFG
Sbjct: 233 SGIIYCLSRKKVEEIHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFG 292
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
MGID+ DVR V H++ PKS+E +YQE+GRAGRD L + +++Y +D ++E
Sbjct: 293 MGIDKPDVRCVIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPEDIHKLE 344
>gi|5281068|gb|AAD41441.1|U92536_1 RECQ helicase homolog [Drosophila melanogaster]
Length = 1487
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/356 (44%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I E LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAESLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L +++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKA 1079
>gi|256419821|ref|YP_003120474.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
gi|256034729|gb|ACU58273.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
Length = 733
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 251/443 (56%), Gaps = 42/443 (9%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K +L+ LR HFG F+ Q I+++L+G+D F +MPTGGGKS+CYQ+PAL G L
Sbjct: 5 KVSLIDALREHFGFDSFKGNQEIIIKSILAGKDTFVIMPTGGGKSLCYQLPALMSSGCAL 64
Query: 83 VVSPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+VSPLIALM+NQV ++ K FL+ST + K+ DL SGK ++LYV PE
Sbjct: 65 IVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLSKAQIKKVRTDLLSGKT--KMLYVAPE 122
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILA 198
+ +++ ++ +A+DEAHCIS WGHDFRP YR+L + + D +PI+A
Sbjct: 123 TLTKQENLDFFRELE----ISFIAVDEAHCISEWGHDFRPEYRRLKEMIEQINDSLPIIA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D++++L L++P V SSFNR NL+YE+R K D ++ + +
Sbjct: 179 LTATATPKVQSDIVKNLELRDPQVFLSSFNRSNLYYEIRPKRKKDQTIREIVKFIHQHKG 238
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+Y L R T +EL+ L A I AYHAGL+ R+ D ++ V+VAT+AF
Sbjct: 239 KSGIIYTLNRKTTEELADMLVANNIKAVAYHAGLDAGTRAQRQDMFLHEDVDVIVATIAF 298
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+NIPKS+E +YQE+GRAGRD L + +Y D +++E ++
Sbjct: 299 GMGIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGICVCFYSYKDVQKLEHLM---- 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYY 438
+ S RE ++ + A +R ++L Y+
Sbjct: 355 --RDKPLSEREMGAQLINETVAYAESSACRR----------------------KVILHYF 390
Query: 439 SFHLLKQIPVSLCKNSCDACKHP 461
++ S C N+CD C++P
Sbjct: 391 G----EKYEESQCNNACDNCRNP 409
>gi|374375555|ref|ZP_09633213.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
gi|373232395|gb|EHP52190.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
Length = 751
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 222/349 (63%), Gaps = 16/349 (4%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92
HFG +F+ Q I+++LSG+D F +MPTGGGKS+CYQ+PA+ G+ ++VSPLIALM+
Sbjct: 33 HFGFQKFKGNQEAIIESLLSGKDTFVIMPTGGGKSLCYQLPAVIMEGVAIIVSPLIALMK 92
Query: 93 NQV---IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG--F 146
NQV G FL+ST + ++++DL +GK +LLYV PE LT F
Sbjct: 93 NQVDLVRGYNSNDEIAHFLNSTLNKKEIKEVHDDLLTGKT--KLLYVAPETLTKQENLTF 150
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205
S LK ++ A+DEAHCIS WGHDFRP YR+L + N + P+ ++ALTATA P
Sbjct: 151 FSDLK-------ISFFAVDEAHCISEWGHDFRPEYRRLREMMNQINPEAAVIALTATATP 203
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D++++L L++ + SSFNR NL+YE+ K + +K + I+Y
Sbjct: 204 KVQSDIVKNLALKDANIFISSFNRDNLYYEIVPKVSKKQTNESMVRFIKGMKNKSGIIYT 263
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T +EL+ L A GI AYHAGL+ K R+ D +++ QV+VAT+AFGMGID+
Sbjct: 264 LNRKTTEELADILMANGIKAVAYHAGLDSKLRAERQDQFLNEDVQVIVATIAFGMGIDKP 323
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
D+R V H+NI KS+E +YQE+GRAGRD L K LLYY D ++E ++
Sbjct: 324 DIRFVIHYNISKSIENYYQETGRAGRDGLEGKCLLYYSHKDVSKLEHLM 372
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 164/376 (43%), Positives = 231/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRKTFGYQQFRPGQQQVIDAVLDGRDCLVVMPTGGGKSLCYQIPALINNGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ E L+STQ + + I + G S++LLY+ PE T F+
Sbjct: 75 ISLMKDQVDQLRANGVEAECLNSTQNREQQVDIIQRCRQG--SIKLLYIAPERLVTDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L H L+A+DEAHCIS WGHDFRP YR L R P++P +ALTATA
Sbjct: 133 DQLHDWHP----VLLAVDEAHCISQWGHDFRPEYRALGQFRRRFPELPFIALTATADKTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ L L +PL+ SSF+RPN+ Y + +YK L L S ++ I+YC
Sbjct: 189 RQDITRLLELHDPLIHLSSFDRPNIRYTLVEKYKPL-----DQLWSFVRGQQGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
RT +E + L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRTKVEETAERLQKRGLSVAPYHAGLDNNQRAWVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L++ D + L + + Q
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFFDPADMAWLRRCLEEKPAGEQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|110597180|ref|ZP_01385469.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
gi|110341371|gb|EAT59836.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
Length = 597
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/345 (43%), Positives = 224/345 (64%), Gaps = 9/345 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
+R FG +FR Q ++A+L RD F +MPTGGGKS+CYQ+PA+ PG +V+SPLIA
Sbjct: 1 MRKVFGFREFRPNQEKIVRAILEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVISPLIA 60
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV G + GI FL+S+Q + + + +L S SL LLYV PE F
Sbjct: 61 LMKDQVDGARANGIRAAFLNSSQLPEERESVMRELLSN--SLDLLYVAPERFTFDHFREL 118
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L +++ +++ IDEAHC+S WGHDFRP Y LS+L + PD+P+ A TATA +VQ+
Sbjct: 119 LGRVN----ISMAVIDEAHCVSEWGHDFRPDYLSLSALVSLFPDLPVSAFTATATHRVQQ 174
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ + L+NPL++++SF+RPNLFY+VR+K+ D A + ++LKAN I+Y R
Sbjct: 175 DILDRIALRNPLIVRASFDRPNLFYDVRFKEKPD---AQIVAILKANKGKAGIIYRTSRK 231
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++ +A L A G YHAGL+D R + +I +V+VAT+AFGMGID+ ++R
Sbjct: 232 SVNDTAAMLQARGFRALPYHAGLSDDERKRNQEAFIRDEVEVIVATIAFGMGIDKSNIRF 291
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
V H ++PKS+E +YQE+GRAGRD P+ L + D ++ F +
Sbjct: 292 VIHADLPKSIENYYQETGRAGRDGEPAHCTLLFAQGDIPKVRFFI 336
>gi|167747470|ref|ZP_02419597.1| hypothetical protein ANACAC_02191 [Anaerostipes caccae DSM 14662]
gi|167652832|gb|EDR96961.1| ATP-dependent DNA helicase RecQ [Anaerostipes caccae DSM 14662]
Length = 616
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 236/380 (62%), Gaps = 14/380 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +FG FR+ Q I AVL GRD +MPTG GKS+C+QIPAL PGI LVVSPLI
Sbjct: 7 LLKQYFGFDDFREGQKPLIDAVLDGRDVLGIMPTGAGKSLCFQIPALMMPGITLVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L + GI FL+S+ +M K + G+ +++YV PE T GF
Sbjct: 67 SLMKDQVGALNQAGIHAAFLNSSLSMGQYRKALDLAREGR--YKIIYVAPERLETEGF-- 122
Query: 149 KLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
L+ S G+ ++ +A+DEAHC+S WG DFRPSY K+ S LP P+L A TATA +
Sbjct: 123 -LRFALSPGVDISFLAVDEAHCVSQWGQDFRPSYLKILSFLEKLPRRPVLGAYTATATVE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCAI 262
V++DV++ L L++PLV+ + F+R NLF+ V+ D Y +L S L+ + + I
Sbjct: 182 VKEDVLDILNLRDPLVVTTGFDRANLFFGVKKPR---DKYRELESYLREKEEKMPGSSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R + +E+ L G S YHAGL+D R DD+I R+Q++VAT AFGMGI
Sbjct: 239 VYCLSRKSVEEVCYQLREAGFSVTRYHAGLSDTERRENQDDFIYDRRQIMVATNAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LY+G D+R F++ +
Sbjct: 299 DKPDVRFVIHYNMPKNMESYYQEAGRAGRDGEPAECILYFGAADQRTNRFLIEHGEDNQE 358
Query: 383 QSFSTRERSSKKSISDFSQV 402
TR +K + Q+
Sbjct: 359 LDEETRRIVMEKDLGRLKQM 378
>gi|393763185|ref|ZP_10351808.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
gi|392606102|gb|EIW88990.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
Length = 606
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 228/356 (64%), Gaps = 9/356 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ L+ FG++ +RD Q + I A L+GRDCF L+PTGGGKS+CYQ+PAL P + +V
Sbjct: 3 EQLLTALKQIFGYSSWRDGQAEIIAAALAGRDCFVLLPTGGGKSLCYQLPALQLPKVTVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + ++ L + L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDTLQANGIAAAYVNSSLSREAVLEVLNQLRYDE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHC+S WGHDFRP Y L+ LR + P VP++ALTATA
Sbjct: 121 PQFIERLQEVG----VSLFAIDEAHCVSQWGHDFRPDYMALAQLRQHFPGVPVMALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L LQ P + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDIVQQLALQQPFIHRGSFDRPNIRYTVQEKF---RPLEQLLAYLKQQENHSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQEKGFKAAAYHAGHDATHRQQVQDAFKRDDLALIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ ++R V HF +P+++EA+YQE+GRAGRD + +++LL + D RM+ L ++
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEALLLFDPADIGRMKRWLQTEEN 349
>gi|386743723|ref|YP_006216902.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
gi|384480416|gb|AFH94211.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
Length = 608
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 234/370 (63%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ GI L+S+QT Q + + G +++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGIKAACLNSSQTAQEQRDVMALCAEG--AIKLLYVAPERLLTDYFLSQLSSW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ ++L+A+DEAHC+S WGHDFRP YR + LR + PDVPI+ALTATA + D++
Sbjct: 139 N----ISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLALHDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|384098146|ref|ZP_09999265.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
gi|383836292|gb|EID75705.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
Length = 733
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 224/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q D I+++++ ++ F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKHYFGFGKFKGLQEDVIKSIINNQNTFVIMPTGGGKSLCYQLPALVKDGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ GIA SS +VK ++ +D+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNNGIAHVLNSSLTKTEVK-QVMQDIKSG--ITKLLYVAPESLTKED 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ L+ I ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ LTATA
Sbjct: 129 YIEFLRTIQ----ISFVAVDEAHCISEWGHDFRPEYRNIRAIIKRLGDDIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGMTDAKTFKASFNRPNLYYEVRPK--TKNVDADIIRFIKQNPGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMS 353
>gi|344291164|ref|XP_003417306.1| PREDICTED: ATP-dependent DNA helicase Q5 [Loxodonta africana]
Length = 410
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/398 (43%), Positives = 241/398 (60%), Gaps = 16/398 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFGPERRVQSTLKKIFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +V+SPLIAL+++QV L + L+S + Q K ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVISPLIALIQDQVDHLLALKVHVASLNSKLSAQEKKEVLSDLEREKPQTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLSHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSV 252
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y D C
Sbjct: 189 VALTATATLQVQEDVFAALHLKPPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFC-- 246
Query: 253 LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
LKA G+ C IVYC R C++L+ LS G++ AYHAGL R V +W+
Sbjct: 247 LKALGEKADKGPSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKAPDRMLVQSEWM 306
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 307 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRS 366
Query: 366 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL 403
DR ++ F++ K +K + + S K +IS F ++
Sbjct: 367 DRDQVSFLIRKEVAKLQEKRGNKA-SDKAAISAFDALV 403
>gi|307942792|ref|ZP_07658137.1| ATP-dependent DNA helicase RecQ [Roseibium sp. TrichSKD4]
gi|307773588|gb|EFO32804.1| ATP-dependent DNA helicase RecQ [Roseibium sp. TrichSKD4]
Length = 627
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 224/353 (63%), Gaps = 12/353 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H A ++LR FG+A+FR KQ D I A++SGRD L PTG GKS+CYQIPAL + G+
Sbjct: 22 HSVRAPEEILRTVFGYAEFRGKQKDVINALVSGRDAVVLFPTGAGKSLCYQIPALCRSGL 81
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L+ G+ L+S+ + + + +IY D+ + +L LLYVTPE
Sbjct: 82 GIVVSPLIALMKDQVGALQAAGVNAAALNSSLSPEERDEIYRDIR--EETLDLLYVTPER 139
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT GF L + L+L AIDEAHC+S WGHDFRP Y LS L + P VP +ALT
Sbjct: 140 LATEGFRRVLDTVR----LSLFAIDEAHCVSQWGHDFRPEYLSLSLLTDRYPGVPRVALT 195
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA P Q+D+ E L L+ V +SF+RPN+ YE+ + + L L +
Sbjct: 196 ATADPHTQRDLQERLRLEQADVFITSFDRPNIRYEIVERT---NQRQQLLDFLNRHKGES 252
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R ++++ +L A GI YHAGL + R++ D ++ +VATVAFGM
Sbjct: 253 GIVYCLSRAKVEDIAEWLCAKGIKALPYHAGLPAEMRAANQDAFLLEEGLCLVATVAFGM 312
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
GID+ DVR V H ++P S+EA+YQE+GRAGRD PS++ + YGM D RRRM
Sbjct: 313 GIDKPDVRFVAHLDLPSSVEAYYQETGRAGRDGEPSEAFMAYGMADVVQRRRM 365
>gi|308462738|ref|XP_003093650.1| CRE-HIM-6 protein [Caenorhabditis remanei]
gi|308249588|gb|EFO93540.1| CRE-HIM-6 protein [Caenorhabditis remanei]
Length = 1039
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/382 (43%), Positives = 228/382 (59%), Gaps = 31/382 (8%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 267 EELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTVV 326
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
VSPL +L+E+Q + +KE GI E L++ + + IY DL S P+++LLYVTPE ++A
Sbjct: 327 VSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKISA 386
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALT 200
+ +S +H RGLL IDEAHC+S WGHDFRP Y KLS+LR + P VPI+ALT
Sbjct: 387 SGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIALT 446
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D ++L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 447 ATATPKIVTDARDNLKMQNSKLFISSFVRDNLKY-----DLIPKAAKSLINVVEKMKQLY 501
Query: 259 --TCAIVYCLE-------------------RTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
IVYCL R C+ + L+ G+S YHAGLND R
Sbjct: 502 PGKSGIVYCLSRYKILQKKRQKIYLTLAFFRKECETVQMMLTKAGLSAEVYHAGLNDGLR 561
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
SV W++++ V+ AT+AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS
Sbjct: 562 VSVQKGWLANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSY 621
Query: 358 SLLYYGMDDRRRMEFILSKNQS 379
L+ Y D R+ ++ + +
Sbjct: 622 CLMLYSYHDSIRLRRMIEEGNT 643
>gi|183600296|ref|ZP_02961789.1| hypothetical protein PROSTU_03856 [Providencia stuartii ATCC 25827]
gi|188020087|gb|EDU58127.1| ATP-dependent DNA helicase RecQ [Providencia stuartii ATCC 25827]
Length = 608
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 234/370 (63%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ GI L+S+QT Q + + G +++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGIKAACLNSSQTAQEQRDVMALCAQG--AIKLLYVAPERLLTDYFLSQLSSW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ ++L+A+DEAHC+S WGHDFRP YR + LR + PDVPI+ALTATA + D++
Sbjct: 139 N----ISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLALHDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|305664748|ref|YP_003861035.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
gi|88707870|gb|EAR00109.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
Length = 736
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 225/351 (64%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q + ++ ++ G++ F +MPTGGGKS+CYQ+PAL + G ++VSPLIA
Sbjct: 17 LKKYFGFSQFKGLQEEVVKNIVQGKNTFVIMPTGGGKSLCYQLPALMQNGTAIIVSPLIA 76
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS +VK ++ ED+ +G +LLYV PE
Sbjct: 77 LMKNQVDAIRGISSEYGIAHVLNSSLNKTEVK-QVKEDITNG--ITKLLYVAPESLTKEV 133
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ LK S G+ + VA+DEAHCIS WGHDFRP YR L ++ L D +PI+ LTATA
Sbjct: 134 YIEFLK---SAGI-SFVAVDEAHCISEWGHDFRPEYRNLRTIVARLGDSIPIIGLTATAT 189
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNR NLFYEVR K D+ D+ +K N IVY
Sbjct: 190 PKVQEDIIKNLGITDAKVFKASFNRANLFYEVRTKTANVDS--DIIRFVKQNSGKSGIVY 247
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 248 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEDVDVVVATIAFGMGIDK 307
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 308 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMS 358
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 222/347 (63%), Gaps = 10/347 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ L+ FG+ +FR +Q + I VLSG+D F +MPTG GKS+CYQ+PA++ PG+ +V+S
Sbjct: 9 VINKLKSVFGYDRFRGEQEEIINNVLSGKDTFVIMPTGAGKSLCYQLPAISLPGVAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM+NQV L G+ +FL+ST T ++ ++ +G+ ++LLYV PE
Sbjct: 69 PLIALMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKKETLNGE--IKLLYVAPESLTKED 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ LKK ++ VAIDEAHCIS WGHDFRP YRK+ S+ + + +PI+ALTATA
Sbjct: 127 NILFLKK----AAISFVAIDEAHCISEWGHDFRPEYRKIHSIIESINNNIPIIALTATAT 182
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D+ ++L + + ++ KSSFNR NLFYEVR K D L +KA I+Y
Sbjct: 183 PKVQLDIQKNLQMDDAVLFKSSFNRENLFYEVRPKG---DTKKKLIKFIKARKGQSGIIY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L + YHAGL R D +++ V+VAT+AFGMGID+
Sbjct: 240 CLSRKKVEEIAELLRVNDVKALPYHAGLEPAVRMGNQDAFLNEDADVIVATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H++ PKS+E +YQE+GRAGRD L++Y M+D ++E
Sbjct: 300 PDVRFVVHYDTPKSLEGYYQETGRAGRDGNEGHCLMFYSMNDIIKLE 346
>gi|354595778|ref|ZP_09013795.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
gi|353673713|gb|EHD19746.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
Length = 610
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/347 (46%), Positives = 233/347 (67%), Gaps = 14/347 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A +SGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIINATISGRDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ SG+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQHEVMAGCRSGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L IH R +L+A+DEAHCIS WGHDFRP YR L ++ + P +P++ALTA
Sbjct: 127 TTDSFLDHL--IHWRP--SLIAVDEAHCISQWGHDFRPEYRALGQVKQHFPGLPVIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PLV SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRSDIVRLLDLQSPLVQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R +++SA L + G+S AAYHAGL+++ R+ V + + QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD 344
>gi|332238724|ref|XP_003268551.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Nomascus
leucogenys]
Length = 1417
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 222/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGD 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+ +SPL +L+ + V L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TIEISPLRSLIVDPVQKLTSLDIPATYLTGDKTDSETTNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNILRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>gi|29349252|ref|NP_812755.1| ATP-dependent DNA helicase RecQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|380693604|ref|ZP_09858463.1| ATP-dependent DNA helicase RecQ [Bacteroides faecis MAJ27]
gi|383120164|ref|ZP_09940895.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
gi|29341160|gb|AAO78949.1| ATP-dependent DNA helicase recQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837322|gb|EES65422.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
Length = 726
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 224/350 (64%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIIQNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAK--TNNIDKDIIKFIKNNSEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + +V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSMTRTKNQDDFLMEKVEVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCLTFYTNKDLQKLE 347
>gi|408491728|ref|YP_006868097.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408469003|gb|AFU69347.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 728
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 223/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I++++S +D F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 10 LKKYFGFNEFKGLQEQVIKSIISNKDTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 69
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS QVK ++ ED+ SG +L+YV PE
Sbjct: 70 LMKNQVDAIRNISEHHGVAHVLNSSLNKTQVK-QVKEDISSG--ITKLVYVAPESLTKTE 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ LK + ++ +AIDEAHCIS WGHDFRP YR L ++ + ++PI+ LTATA
Sbjct: 127 YIEFLKGEN----ISFLAIDEAHCISEWGHDFRPEYRNLKNIIERIGENIPIIGLTATAT 182
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + N K SFNRPNL+YE+R K DD +D+ +K N I+Y
Sbjct: 183 PKVQEDILKNLRIPNSKTFKDSFNRPNLYYEIRPK--TDDVDSDIIKFVKKNSGKSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R ++LS L G+ YHAGL+ K+RS D ++ VVVAT+AFGMGID+
Sbjct: 241 CLSRKRVEQLSQALQVNGVKAVPYHAGLDAKSRSRHQDMFLMEDIDVVVATIAFGMGIDK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD + YY D ++E +S
Sbjct: 301 PDVRFVVHNDIPKSIESYYQETGRAGRDGGEGHCVAYYNHKDIEKLEKFMS 351
>gi|449457093|ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
gi|449511185|ref|XP_004163888.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
Length = 1269
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 260/448 (58%), Gaps = 22/448 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PG+ LV+SPL++L+++
Sbjct: 513 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQD 572
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I+ +LS+ + +I+ DL S +LLYVTPE A + L+
Sbjct: 573 QIMHLIQANISAAYLSANMEWSEQQEIFRDLSSDCSKYKLLYVTPEKVAKSDVLLRHLES 632
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++R LL + IDEAHC+S WGHDFRP Y+ L L+ P +P+LALTATA V++DV+
Sbjct: 633 LNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKIPVLALTATATASVKEDVV 692
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + K +DD + +K N D C IVYCL R
Sbjct: 693 QALGLINCIIFRQSFNRPNLWYSVIPKTKKCVDD----IDKFIKENHFDECGIVYCLSRM 748
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ RS + W ++ ATVAFGMGI++ DVR
Sbjct: 749 DCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRF 808
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD L S +LYY D R++ ++S+ ++ S S
Sbjct: 809 VIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYN 868
Query: 390 RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
R+ ++ ++L+ + R++ DV L LV H ++
Sbjct: 869 RT---NLGSSGRILETNTENLLRMVSYCENDV----DCRRLLQLV------HFGEKFDPG 915
Query: 450 LCKNSCDAC-KHPNLLAKYLGELTSAVL 476
CK +CD C K NL+ K + +++ ++
Sbjct: 916 NCKKTCDNCLKSTNLIEKDVTDISKQLV 943
>gi|330752412|emb|CBL87363.1| ATP-dependent DNA helicase RecQ [uncultured Flavobacteriia
bacterium]
Length = 739
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +FR Q ++++L+ ++ F +MPTGGGKS+CYQ+PAL GI +VVSPLIA
Sbjct: 21 LKKFFGFQKFRGLQKQIVKSILNNKNTFVIMPTGGGKSLCYQLPALISDGIAVVVSPLIA 80
Query: 90 LMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV L K+ GIA F SS Q+ + +D+ SG +LLYV PE
Sbjct: 81 LMKNQVDALRGICKDDGIAHVFNSSLTKNQINN-VKKDVTSGLT--KLLYVAPESLVKEE 137
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ LK ++ AIDEAHCIS WGHDFRP YR L + + D + I+ALTATA
Sbjct: 138 NITFLKNTK----VSFFAIDEAHCISEWGHDFRPEYRNLRQVVKKIGDNISIIALTATAT 193
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D++++L + NP + K+SFNRPNLFYEVR K D+ S +K+N I+Y
Sbjct: 194 PKVQDDILKNLKMVNPEIFKASFNRPNLFYEVRQK--TSKVEYDIVSFIKSNETKSGIIY 251
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +ELS +L I YHAGL+ K R D +++ +V+VAT+AFGMGID+
Sbjct: 252 CLSRKKVEELSQFLQVNEIRALPYHAGLDSKQRVKNQDSFLNEDCEVIVATIAFGMGIDK 311
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y DD ++E +S
Sbjct: 312 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYDDIEKLEKFIS 362
>gi|53133486|emb|CAG32072.1| hypothetical protein RCJMB04_17c23 [Gallus gallus]
Length = 1183
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/393 (43%), Positives = 232/393 (59%), Gaps = 11/393 (2%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 397 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 456
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 457 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIASTYLTGDITDAD 516
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ +++R LL IDEAHC+S WGH
Sbjct: 517 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGH 576
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 577 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 636
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 637 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 696
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 697 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 756
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
S LL+Y D R+ ++ + NS + T
Sbjct: 757 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQT 789
>gi|67924781|ref|ZP_00518182.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|416405865|ref|ZP_11687987.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
gi|67853376|gb|EAM48734.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|357261215|gb|EHJ10512.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
Length = 710
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 245/394 (62%), Gaps = 8/394 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ HFG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 7 SLENALKDHFGYDQFRPGQKQIITEALNNKDLLVIMPTGGGKSLCFQLPALLKPGLCIVV 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L + GI FL+ST + + + +GK ++LLYV PE
Sbjct: 67 SPLIALMQDQVDSLLDNGIGATFLNSTLSREQLKSRENSILNGK--IKLLYVAPERLLND 124
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F++ L ++ + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP++ALTATA
Sbjct: 125 SFLNFLDFLNQKIGLSSFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPTVPVVALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D++E L L+ P V +SF+RPNL+YEV+ K +YA L + +++ + IVY
Sbjct: 185 KRVREDIIEQLGLEKPSVHLASFDRPNLYYEVQQKS--RRSYAQLLNYIRSQ-EGSGIVY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++ L GI YHAG+ D R++ +I +++VATVAFGMGI++
Sbjct: 242 CLSRKNVETVAFRLQQDGIEALPYHAGMYDDERATNQTRFIRDDVRIIVATVAFGMGINK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ L+ D +++++++ + S Q
Sbjct: 302 PDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFLSFGDLKKIDYLIDQKSSPKEQK 361
Query: 385 FSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ R + + D+++ + R G ++
Sbjct: 362 IA---RQQLRKVVDYAEANECRRTIILRYFGQQH 392
>gi|348580071|ref|XP_003475802.1| PREDICTED: Bloom syndrome protein-like [Cavia porcellus]
Length = 1405
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/386 (44%), Positives = 231/386 (59%), Gaps = 5/386 (1%)
Query: 6 LAMQSTSQT--QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
LA ++TSQ Q H KE ++K+ FG FR QL+AI A L G DCF LMPTG
Sbjct: 621 LASRNTSQERFQSLSFPHTKE-MMKIFHKKFGLHNFRTNQLEAINATLLGEDCFILMPTG 679
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GGKS+CYQ+PA PG+ +V+SPL +L+ +QV L I +L+ +T IY
Sbjct: 680 GGKSLCYQLPACVLPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQ 739
Query: 124 LDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y+
Sbjct: 740 LSKKDPIIKLLYVTPEKVCASNRLISILENLYERKLLARFVIDEAHCVSQWGHDFRPDYK 799
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242
+++ LR P VP++ALTATA +VQ D++ L + P V SFNR NL Y V K
Sbjct: 800 RMNMLRQKFPSVPVMALTATANSRVQTDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPK 859
Query: 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
A+ L + K + I+YCL R CD ++ L G++ AYHAGL+D AR V
Sbjct: 860 KVAFDCLEWIRKHHPYDSGIIYCLSRWECDTMADTLQKDGLAALAYHAGLSDAARDEVQH 919
Query: 303 DWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
WI+ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+
Sbjct: 920 KWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLF 979
Query: 362 YGMDDRRRMEFILSKNQSKNSQSFST 387
Y D R++ ++ + N + T
Sbjct: 980 YTYHDVTRLKRLIMMEKDGNRHTKET 1005
>gi|148226526|ref|NP_001089858.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus laevis]
gi|80476410|gb|AAI08556.1| MGC131022 protein [Xenopus laevis]
Length = 652
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 216/340 (63%), Gaps = 3/340 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR QL+ I A +SGRD F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+
Sbjct: 89 FQLQTFRSLQLETINATMSGRDVFLIMPTGGGKSLCYQLPALCSDGFTLVICPLISLMED 148
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L G++ L+++ + + ++ ++ + K L+LLYVTPE A + FMS+L+K
Sbjct: 149 QLMVLNRLGVSATSLNASSSKEHVKWVHGEMMNKKSQLKLLYVTPEKVAKSKVFMSRLEK 208
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ GLL VA+DE HC S WGHDFRP Y+ L L+ P+ P++ LTATA V KD
Sbjct: 209 AYQGGLLARVAVDEVHCCSQWGHDFRPDYKTLGILKRQFPNSPLIGLTATATSHVLKDAQ 268
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ LC+Q PL +SFNRPNLFYEVR K +D AD+ ++ + I+YC +
Sbjct: 269 KILCVQKPLTFTASFNRPNLFYEVRLKPSSSEDFIADITKLINSRYKGQSGIIYCFSQKD 328
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
++++ L GI AYHA + + +S V W ++ Q+VVATVAFGMGID+ DVR V
Sbjct: 329 SEQVTMSLQKLGIRAGAYHANMEPRDKSKVHTKWTANEIQIVVATVAFGMGIDKPDVRFV 388
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 389 IHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRI 428
>gi|375255218|ref|YP_005014385.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
gi|363408301|gb|AEW21987.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
Length = 786
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/356 (44%), Positives = 229/356 (64%), Gaps = 19/356 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L +HFG + F+ Q + I+ VL+G+D F LMPTGGGKS+CYQ+P+L G LV+S
Sbjct: 66 ITEALLFHFGFSSFKGNQKEIIENVLAGKDTFVLMPTGGGKSLCYQLPSLMMDGTALVIS 125
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E G+A F++S+ ++ +D+ SGK +LLYV PE L
Sbjct: 126 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNRAAIEQVKQDILSGKT--KLLYVAPESL 182
Query: 141 TATP--GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
T GF+ ++K ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 183 TKEENIGFLRQVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRPLIA 235
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +KAN
Sbjct: 236 LTATATPKVQHDIQKNLGMMDAKVFKSSFNRANLYYEIRPKG--KDIDREIIKYIKANEG 293
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L A GI YHAG++ + RS+ D ++ + V+VAT+AF
Sbjct: 294 KSGIIYCLSRKKVEEFADILCANGIKALPYHAGMDSQQRSANQDAFLMEKTDVIVATIAF 353
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E L
Sbjct: 354 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCVAFYANKDLQKLEKFL 409
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 220/340 (64%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+K+L FG+ FR +Q + ++ VL+G+D F LMPTGGGKS+CYQ+PAL PG LVVSP
Sbjct: 6 IKILNDIFGYKAFRPRQQEIVETVLAGKDAFVLMPTGGGKSLCYQVPALCLPGTALVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +S ++ +L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSALGEAEARRVLAELHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K + ++L AIDEAHC+S WGHDFRP Y +L LR P +P++ALTATA +
Sbjct: 124 LERIKTLP----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPQIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + F+RPN+ Y V K+ + L + L D IVY L
Sbjct: 180 TKGDILSRLGLEDAACFFAGFDRPNIRYGVMEKN---KPFNQLTAFLATRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L GI AAYHAGL DK R V + ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVARKLCGAGIKAAAYHAGLPDKERHQVQEAFLRDDVKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGD 336
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/399 (39%), Positives = 245/399 (61%), Gaps = 8/399 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L L+ FGH FR Q I+ L +D +MPTGGGKS+CYQ+PAL KPG
Sbjct: 1 MEQSPSLEHALKHFFGHDCFRPGQQQIIEEALQNQDLLIIMPTGGGKSLCYQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLI+LM++QV L++ GI F++ST + Q + GK ++LLYV+PE
Sbjct: 61 LTVVVSPLISLMQDQVTSLEDNGIGATFINSTLSFQQMRSREAAILEGK--IKLLYVSPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F+ L ++ S+ + AIDEAHC+S WGHDFRP YR+L LRN P+ +LAL
Sbjct: 119 RLLAEQFIPFLDRVRSQIGIPTFAIDEAHCVSQWGHDFRPDYRQLKLLRNRYPNSSVLAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +VQ+D+++ L L+ P V +SFNRPNL+Y+V+ K +Y L ++++ +
Sbjct: 179 TATATNRVQQDIIQQLELRQPKVHIASFNRPNLYYDVQPKQ--RQSYQQLLKQIRSHQGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC R + +E++ L GIS YH G+ DKAR++ + +I +V+VATVAFG
Sbjct: 237 -GIVYCTSRRSVEEVAFRLQNDGISALPYHGGMTDKARATNQNRFIRDDVRVIVATVAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E++YQESGRAGRD P+ + Y D ++ +++ +
Sbjct: 296 MGINKPDVRFVIHYDLPRNIESYYQESGRAGRDGEPATCTVLYSASDISKLHYLIDQKPD 355
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
Q + ++ + I D+++ D + G R+
Sbjct: 356 PKEQRIAYQQLN---QIVDYAEGTDCRRRILLGYFGERF 391
>gi|195329754|ref|XP_002031575.1| GM26077 [Drosophila sechellia]
gi|194120518|gb|EDW42561.1| GM26077 [Drosophila sechellia]
Length = 1268
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/356 (44%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 506 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 565
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 566 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 625
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 626 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 685
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 686 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPAHFSGII 744
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + GI +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 745 YCLSRKECDETSKKMCKDGIRAVSYHAGLTDTERESRQKDWLTGKIRVICATVAFGMGID 804
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L +++
Sbjct: 805 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDMADCILYYNYSDMLRIKKMLDSDKA 860
>gi|296203193|ref|XP_002748783.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 2 [Callithrix
jacchus]
Length = 990
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 260/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPEPRVRSTLKKVFGFDSFKTPLQESATMAVVKGNTDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL KP ++LY+
Sbjct: 69 AEGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKELLADLKQEKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRYLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R V ++W+
Sbjct: 249 ALGQKADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKVSERMLVQNEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K SI F ++ F LG R+ +
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKASIMAFDALVT-----FCEELGCRHAAI------ 416
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
S + P C CD C++P + + L L
Sbjct: 417 -----------SKYFGDAPPA--CAKGCDHCQNPTAVRRQLEAL 447
>gi|440799208|gb|ELR20268.1| ATPdependent DNA helicase, RecQ subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 608
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/370 (42%), Positives = 222/370 (60%), Gaps = 33/370 (8%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FGH QFR Q + + ++LSG+D F LMPTG GKS+C+Q+PAL GI +VVS
Sbjct: 1 MEEILQNTFGHPQFRPSQREVMVSILSGQDTFVLMPTGAGKSLCFQLPALVLDGITVVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI GI+ L S+Q + I D+ S +P +LLYVTPEL T G
Sbjct: 61 PLI-------------GISAALLCSSQKKDERDLIQRDITSKQPKTKLLYVTPELIDTQG 107
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F++ L + + L + +DEAH IS WGHDFR +YRKLS + PI
Sbjct: 108 FLNTLYSLRNNNKLAMFVVDEAHAISEWGHDFRFAYRKLSVFKERFNSTPIT-------- 159
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ DV+ SL L PL++ SFNRPN++YEVR+KDLL + + D+ S + C I+YC
Sbjct: 160 RVQTDVVNSLRLDKPLIITLSFNRPNIYYEVRFKDLLGNVHNDIASFISNRAGACGIIYC 219
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+R TC +++ L G++ AYHAGL D R++V W++ ++VAT+AFGMGID+
Sbjct: 220 HKRETCGHVASKLKERGVNAEAYHAGLRDADRTAVQTKWMTGEVDIIVATIAFGMGIDKP 279
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V HF++PK++E FYQ G++ S SLLYY DD+ F+L++ K
Sbjct: 280 DVRFVIHFDVPKNLEGFYQAHGKS------SVSLLYYSKDDKSLNSFLLAQAAQKQ---- 329
Query: 386 STRERSSKKS 395
RER +++
Sbjct: 330 --RERQGQQT 337
>gi|383810866|ref|ZP_09966350.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356505|gb|EID34005.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
Length = 727
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 221/349 (63%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+++FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKYYFGFEKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ K+ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDKVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTAT
Sbjct: 125 KEENMAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRYAIDTIGAAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRAKRSDDDTSKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKNDLKKLE 349
>gi|386812206|ref|ZP_10099431.1| DNA helicase RecQ [planctomycete KSU-1]
gi|386404476|dbj|GAB62312.1| DNA helicase RecQ [planctomycete KSU-1]
Length = 714
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 232/369 (62%), Gaps = 19/369 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ K L+ +FG+ F Q D I+ VL+ RD F LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 1 MYKTLQKYFGYTSFYPLQEDIIKEVLAQRDAFVLMPTGGGKSLCYQLPALLFSGVTIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL-----RLLYVTPEL 140
PLIALM++QV GL GI F++S+ + Y ++D+ + SL ++LY+ PE
Sbjct: 61 PLIALMKDQVDGLLANGIPAIFINSSLS-------YSEIDAKRQSLLNNEIKILYIAPER 113
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
P F+ L+ + ++L AIDE+HCIS WGHDFRP YR+L L+ P VP++ALT
Sbjct: 114 LFMPEFLQFLQGLK----ISLFAIDESHCISEWGHDFRPEYRQLEILKEKFPKVPVMALT 169
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA P VQKD++ L L + + K+SFNR NL+Y+++ KD + Y + LK+
Sbjct: 170 ATATPAVQKDIILQLKLSDCRIFKASFNRKNLYYQIKPKD---NPYHQILHYLKSRKKDS 226
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R T + L+ L A G YHAGL + R+ + +I +++VAT+AFGM
Sbjct: 227 GIIYCQSRKTVESLTTSLQAEGYRVLPYHAGLPAEVRTENQERFIHDDVEIIVATIAFGM 286
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD L S +L + D+ ++E+ + + +
Sbjct: 287 GIDKPDVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKFKIEYFIHQKIDE 346
Query: 381 NSQSFSTRE 389
N + + ++
Sbjct: 347 NEKLIAYKQ 355
>gi|334366676|ref|ZP_08515601.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
gi|313157180|gb|EFR56610.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
Length = 730
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 224/356 (62%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ + GIA FL+S+ ++ D+ SGK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSADSGIA-HFLNSSLNKTAVAQVRADVLSGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ D ++ R V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE 348
>gi|390945503|ref|YP_006409263.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
gi|390422072|gb|AFL76578.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
Length = 730
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 224/356 (62%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ + GIA FL+S+ ++ D+ SGK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSADSGIA-HFLNSSLNKTAVAQVRADVLSGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ D ++ R V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE 348
>gi|50557416|ref|XP_506116.1| YALI0F31977p [Yarrowia lipolytica]
gi|49651986|emb|CAG78930.1| YALI0F31977p [Yarrowia lipolytica CLIB122]
Length = 1300
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 270/482 (56%), Gaps = 57/482 (11%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG---- 79
+ + K+LR F +FR QL AI A L+G D LMPTGGGKS+CYQ+PAL G
Sbjct: 492 QEVYKVLRERFMLNEFRANQLHAINATLNGDDVLVLMPTGGGKSLCYQLPALVNGGKTRG 551
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPLI+LM++Q L K I+ +S+Q++Q + + L SG + LLYV+PE
Sbjct: 552 LSVVISPLISLMKDQTEALTAKNISCAMFNSSQSVQERKQSLAALSSG--DIALLYVSPE 609
Query: 140 LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ M + L K+H + L + IDEAHC+SSWGHDFRP Y+ L ++++ LP VPI+A
Sbjct: 610 MFQQSNIMQNTLHKLHEQNRLARIVIDEAHCVSSWGHDFRPDYKALVNVKSRLPGVPIMA 669
Query: 199 LTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256
LTATA KV+ D+ CL+ N K SFNRPNL+YEVR K + ++ +L+
Sbjct: 670 LTATANEKVRMDIQG--CLRPNRRFFKQSFNRPNLYYEVRLK--TKNFQQEITDMLRGRY 725
Query: 257 -GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
G T I+YC + C+ S +L GI YHAG+ + R+ V +W S + QVV AT
Sbjct: 726 RGQT-GIIYCHSKKLCETTSEFLKEAGIKADFYHAGMETEQRTYVQGNWQSGKIQVVCAT 784
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H +P++ME +YQE+GRAGRD LPSK ++Y+ D R+M F ++
Sbjct: 785 IAFGMGIDKADVRYVIHCTVPRNMEGYYQETGRAGRDGLPSKCIVYFSQKDARQMLFNIA 844
Query: 376 KNQ-----SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFS--RVLGNRYWDVWPVLPIG 428
++ K + + R+R+ + + V++ R RV RY++
Sbjct: 845 NDEFLGENGKVDWALTQRQRTHHREL--MQGVINYCENRVDCRRVQVLRYFN-------- 894
Query: 429 WFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL----------LAKYLGELTSAVLQK 478
+ LC+NSCD C++ + +AK + +L SA Q
Sbjct: 895 ---------------ETFDPKLCRNSCDNCQYGHEYTRETRDVTDVAKNIIKLVSAATQD 939
Query: 479 NH 480
N
Sbjct: 940 NQ 941
>gi|344248551|gb|EGW04655.1| ATP-dependent DNA helicase Q5 [Cricetulus griseus]
Length = 409
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/345 (45%), Positives = 223/345 (64%), Gaps = 11/345 (3%)
Query: 47 IQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105
I+ +SG +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+++QV L +
Sbjct: 21 IKTAMSGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLALKVQV 80
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165
L+S ++Q + ++ DL+ KP +LLY+TPE+ A+ F L + SR LL+ + +D
Sbjct: 81 SSLNSKLSVQERKQLLSDLERDKPRTKLLYITPEMAASASFQPTLNSLMSRNLLSYLVVD 140
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LK 224
EAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV SL L+ P+ K
Sbjct: 141 EAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFASLHLKQPVASFK 200
Query: 225 SSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CAIVYCLERTTCDELS 275
+ R NLFY+V++K+L+ D Y +L LKA G C IVYC R C++++
Sbjct: 201 TPCFRANLFYDVQFKELIPDLYGNLRDFCLKALGQKADKGLLSGCGIVYCRTREACEQVA 260
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
LS+ G++ AYHAGL R+ V ++W+ + V+VAT++FGMG+D+ +VR V H+NI
Sbjct: 261 VELSSRGVNAKAYHAGLKAPDRTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNI 320
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
KSM +YQESGRAGRD PS LYY DR ++ F++ K K
Sbjct: 321 AKSMAGYYQESGRAGRDGKPSWCRLYYSRSDRDQVSFLIRKEIDK 365
>gi|189463687|ref|ZP_03012472.1| hypothetical protein BACINT_00018 [Bacteroides intestinalis DSM
17393]
gi|189438637|gb|EDV07622.1| ATP-dependent DNA helicase RecQ [Bacteroides intestinalis DSM
17393]
Length = 727
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAEVFKSSFNRPNLYYEVRPK--TNNIDRDIIKFIKNNSEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|427385455|ref|ZP_18881762.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
gi|425727099|gb|EKU89960.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
Length = 727
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGVVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTV----TISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAEVFKSSFNRPNLYYEVRPK--TNNVDRDIIKFIKNNQEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|24646066|ref|NP_524319.2| bloom syndrome helicase ortholog [Drosophila melanogaster]
gi|17366114|sp|Q9VGI8.1|BLM_DROME RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName:
Full=Mutagen-sensitive protein 309; AltName: Full=RecQ
helicase homolog
gi|7299503|gb|AAF54691.1| bloom syndrome helicase ortholog [Drosophila melanogaster]
Length = 1487
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L +++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKA 1079
>gi|363580854|ref|ZP_09313664.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 702
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/436 (38%), Positives = 258/436 (59%), Gaps = 47/436 (10%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+++FR +Q + I A+ G D +MPTGGGKS+CYQ+PA G+ LV+S
Sbjct: 9 LYKNLKEYFGYSEFRQQQKEIITAIFKGNDNLVIMPTGGGKSICYQLPATLLNGLTLVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV GL+ GI F++S+Q + + I+ + + + ++LLYV PE
Sbjct: 69 PLIALMKDQVDGLRANGIGAAFINSSQAAEDQHAIFNAILTNE--IKLLYVAPE------ 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L+ I ++ L+L+AIDEAHCIS+WGHDFRP+Y +L L+N P PI+ALTATA
Sbjct: 121 SLSQLEGILNQTTLSLIAIDEAHCISAWGHDFRPAYTQLGFLKNRFPHTPIIALTATADK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ + L L +P + SSF+RPNL VR D + + + + I+YC
Sbjct: 181 ATREDISKQLNLNHPTLHLSSFDRPNLSLSVRPGI---DRVKKILEFVDDHPNDSGIIYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T + L+ L + G AYHAGL R V +++I+ + Q+V ATVAFGMGID+
Sbjct: 238 LSRKTTENLAEKLDSAGFKAKAYHAGLGHHVREQVQNEFINDQLQIVCATVAFGMGIDKS 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD +PS+++L++ D ++ Q F
Sbjct: 298 NVRWVIHYNLPKNIEGYYQEIGRAGRDGVPSETILFHSYADVVQL------------QQF 345
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQ 445
+T+ +++ ++ ++ ++++ L R VLL Y +
Sbjct: 346 ATKSGNTEVQLAKLDRM-----QQYADALSCR--------------RKVLLSY----FGE 382
Query: 446 IPVSLCKNSCDACKHP 461
+P C N CD CKHP
Sbjct: 383 LPEKDCGN-CDVCKHP 397
>gi|395825932|ref|XP_003786174.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Otolemur
garnettii]
Length = 987
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/362 (45%), Positives = 229/362 (63%), Gaps = 11/362 (3%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI LVVSPL
Sbjct: 20 LKKVFGFDSFKTPLQKSATMAVVKGDKDVFVCMPTGAGKSLCYQLPALLTKGITLVVSPL 79
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S + Q + ++ DL+ KP RLLY+TPE+ A+ F
Sbjct: 80 IALIQDQVDHLLTLKVQVSSLNSKLSAQERKELLSDLEREKPQTRLLYITPEMAASASFQ 139
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+V
Sbjct: 140 PTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLGRTPCVALTATATPQV 199
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT------ 259
Q+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LKA G
Sbjct: 200 QEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDLYGNLRDFCLKALGQKTDKGLS 259
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+ + V+VAT++F
Sbjct: 260 GCGIVYCRTREACEQLAVELSCRGVNAKAYHAGLKASERTLVQNEWMEEKIPVIVATISF 319
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMG+D+ +VR V H+NI KSM + QESGRAGRD PS LYY +DR ++ F++ K
Sbjct: 320 GMGVDKANVRFVAHWNIAKSMAGYCQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEV 379
Query: 379 SK 380
+K
Sbjct: 380 AK 381
>gi|395330800|gb|EJF63182.1| ATP-dependent DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 805
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/474 (39%), Positives = 268/474 (56%), Gaps = 49/474 (10%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVL 82
+A +L+ FGH+ FR KQ + ++A + + PTG GKS+C+Q+PA+A + G+ +
Sbjct: 2 DACSNVLKKTFGHSTFRGKQEEIVEAAI-----LVIAPTGMGKSLCFQVPAVAAQHGVTV 56
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM+NQ+ L++ GIA L+S + + +DL S +PS+RLLY++PE
Sbjct: 57 VVSPLIALMKNQISKLRDLGIAVAALTSETPSRDRAYALQDLRSDEPSIRLLYISPEKYC 116
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L ++ + LN + +DEAHCIS WGHDFR YR+L S R+ P++PI+ALTAT
Sbjct: 117 STEIRHLLNGLYEKDALNRLVVDEAHCISEWGHDFREEYRRLGSFRDKYPNIPIMALTAT 176
Query: 203 AAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKD------LLDDAYADLCSVLK 254
A VQ+DV+ +L + + V FNR NLFYEVRY+ + D Y + ++ +
Sbjct: 177 ATDTVQQDVIRTLKMSAKRLFVAVHPFNRANLFYEVRYQSNPNPTAHMMDVYEYIENLHR 236
Query: 255 ANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW------ISS 307
G + IVYC R CDEL+ +LS GI AYH GL++ L DW +
Sbjct: 237 RRGRASSGIVYCRTRALCDELALFLSKKGIQAKAYHRGLSNAVLDKTLKDWDAGGNGVPG 296
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
VV AT+AFGMGID+ DVR V HFN+PKS+E +YQE+GRAGRD LP+K +L+Y +D
Sbjct: 297 GVDVVCATIAFGMGIDKADVRYVLHFNLPKSIEGYYQETGRAGRDGLPAKCILFYSREDA 356
Query: 368 RRMEFILSKNQSK--------NSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYW 419
R++ +S + SK N S R S ++ DF++ +++ VL RY+
Sbjct: 357 ARVKQFVSDSHSKRVVRAESGNGPEPSQRAADSVSALLDFAENVNIC----RHVLICRYF 412
Query: 420 DVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTS 473
G + L + KQ C CD CK+P+ K L+S
Sbjct: 413 --------GEKIDL----RDPEVTKQ----YCSQMCDVCKYPDKARKRKLHLSS 450
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 224/352 (63%), Gaps = 13/352 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQGGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSEAGIA-HVLNSSLTKTEIAQVKKDISSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+K ++ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LTATA
Sbjct: 127 EEYVTFLQKEK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIKLLGDVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + N K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMANANTFKASFNRPNLYYEVRTK--TKNVESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMS 352
>gi|395801803|ref|ZP_10481058.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395435992|gb|EJG01931.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 731
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/352 (45%), Positives = 224/352 (63%), Gaps = 13/352 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L G++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILDGKNTFVIMPTGGGKSLCYQLPALIQEGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDITSG--LTKLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQLGKVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMADANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMS 352
>gi|118489987|gb|ABK96790.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 617
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/364 (44%), Positives = 223/364 (61%), Gaps = 22/364 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ +DCF LMPTGGGKS+CYQ+PA KPG+ +V+SPL++L+++
Sbjct: 211 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 270
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT I ++L KPS +LLYVTPE + P F+ LK
Sbjct: 271 QIITLNLKFGIRATFLNSQQTSAQAAAILQELRKDKPSCKLLYVTPERIAGNPAFLEILK 330
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP Y++L L+ P VP++ALTATA V++D+
Sbjct: 331 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSVREDI 390
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+++L + LVL++SF+RPNL YEV K DLL D + + C I
Sbjct: 391 LKTLRIPGALVLETSFDRPNLKYEVIGKTKESLKQLGDLLRDRFK----------NQCGI 440
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C E+S +L+ I YHAGL + R V W + +V AT+AFGMG
Sbjct: 441 VYCLSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMG 500
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD P+ + Y D R+ +L Q
Sbjct: 501 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYK 560
Query: 382 SQSF 385
+SF
Sbjct: 561 RESF 564
>gi|253702373|ref|YP_003023562.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
gi|251777223|gb|ACT19804.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
Length = 599
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/340 (46%), Positives = 218/340 (64%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L FG FR Q + ++ VLSGRD F LMPTGGGKS+CYQIPAL PG LVVSP
Sbjct: 6 IQILNDVFGFKSFRSPQHEIVETVLSGRDAFVLMPTGGGKSLCYQIPALCFPGTALVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E GI+ +S ++ L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K + ++L AIDEAHC+S WGHDFRP Y +L LR P++P++ALTATA +
Sbjct: 124 LERIKPLS----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L LQ + F+RPN+ Y V K+ + L L + D IVY L
Sbjct: 180 TRGDILSRLGLQGATCYCAGFDRPNIRYSVIDKN---KPFNQLTGFLSSRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A GI AAYHAGL DK R V + ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVARKLCAAGIKAAAYHAGLPDKERHRVQEAFLKDDIKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGD 336
>gi|224123710|ref|XP_002330189.1| predicted protein [Populus trichocarpa]
gi|222871645|gb|EEF08776.1| predicted protein [Populus trichocarpa]
Length = 588
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/364 (44%), Positives = 223/364 (61%), Gaps = 22/364 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ +DCF LMPTGGGKS+CYQ+PA KPG+ +V+SPL++L+++
Sbjct: 182 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 241
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT I ++L KPS +LLYVTPE + P F+ LK
Sbjct: 242 QIITLNLKFGIPATFLNSQQTSAQAAAILQELRHDKPSCKLLYVTPERIAGNPAFLEILK 301
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP Y++L L+ P VP++ALTATA V++D+
Sbjct: 302 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSVREDI 361
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+++L + LVL++SF+RPNL YEV K DLL D + + C I
Sbjct: 362 LKTLRIPGALVLETSFDRPNLKYEVIGKTKESLKQLGDLLRDRFK----------NQCGI 411
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C E+S +L+ I YHAGL + R V W + +V AT+AFGMG
Sbjct: 412 VYCLSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMG 471
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD P+ + Y D R+ +L Q
Sbjct: 472 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYK 531
Query: 382 SQSF 385
+SF
Sbjct: 532 RESF 535
>gi|157278040|ref|NP_001098120.1| Bloom syndrome helicase [Oryzias latipes]
gi|140083401|gb|ABO84823.1| Bloom syndrome helicase [Oryzias latipes]
Length = 1393
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 226/372 (60%), Gaps = 9/372 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA PG+
Sbjct: 630 HSQE-MMKIFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSPGV 688
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL +L+ +Q+ L I LS ++ +IY L P ++LLYVTPE
Sbjct: 689 TVVVSPLKSLIVDQIQKLTTLDIPATSLSGDKSDSEAGRIYMQLSRKDPLIKLLYVTPEK 748
Query: 141 TATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ G +S L+ ++ RGLL IDEAHC+S WGHDFRP +++L LR P V ++AL
Sbjct: 749 VSASGRLISALQNLYERGLLARFIIDEAHCVSQWGHDFRPDFKRLHELRQKFPSVRMMAL 808
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+VQKD++ L + P V SFNR NL Y V + K + +D + + K
Sbjct: 809 TATATPRVQKDILNQLNMMRPQVFTMSFNRSNLKYSVLPKKPKKVDEDC---IGWIKKHY 865
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVAT 315
IVYCL R CD ++ L GI +YHAGL+D R V WI+ QV+ AT
Sbjct: 866 PRDSGIVYCLSRNDCDAMAESLKRAGIQALSYHAGLSDGDREYVQSKWINQDGCQVICAT 925
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ I+S
Sbjct: 926 IAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCILFYSYTDVHRIKRIIS 985
Query: 376 KNQSKNSQSFST 387
++ +S + +T
Sbjct: 986 MDREGDSHTKAT 997
>gi|358339333|dbj|GAA38465.2| bloom syndrome protein homolog [Clonorchis sinensis]
Length = 949
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/366 (44%), Positives = 225/366 (61%), Gaps = 9/366 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA KL FG FR QL AI A L G DCF +MPTGGGKS+CYQ+PA + G+ LV
Sbjct: 207 EAFSKL----FGLKSFRRNQLQAINAALLGLDCFVIMPTGGGKSLCYQLPAAVQDGLTLV 262
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPL AL+ +QV ++ GI L+ TM ++Y L +LLYVTPE + A
Sbjct: 263 ISPLKALVLDQVTKMQSLGIVAAHLTGEATMTESDRVYASLHLATLRTKLLYVTPEKIAA 322
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L++++ R LL IDEAHC+S WGHDFRP YR LS LR P VP++A+TAT
Sbjct: 323 SDKLKGCLEQLYRRNLLQRFVIDEAHCVSQWGHDFRPDYRNLSILRTNFPKVPMMAMTAT 382
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P+V++D++ L ++N SFNR NL +EVR K L ++ V+ +
Sbjct: 383 ATPRVREDILHQLKMKNTKWFIQSFNRTNLKFEVRPKK-LKSCTKEIIEVIHSEFPRRSG 441
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGM 320
IVYCL R CD ++ LS G++ +AYHAG+ D R + + WI K ++V AT+AFGM
Sbjct: 442 IVYCLSRRECDLVAEELSRAGLAASAYHAGMTDAQRRRIQEAWIQEDKCKIVCATIAFGM 501
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GR+GRD LP+ +LYY D R+ ++ + +
Sbjct: 502 GIDKPDVRFVIHHSLPKSIEGYYQEAGRSGRDGLPATCILYYHWHDVVRLRKLI-QGDTP 560
Query: 381 NSQSFS 386
S +F+
Sbjct: 561 GSNAFA 566
>gi|37528437|ref|NP_931782.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787875|emb|CAE16992.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 608
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 230/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I +L GRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLRKTFGYLQFRSGQQQVIDTILEGRDCLVIMPTGGGKSLCYQIPALVQEGVTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A + L+STQ + + + G ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQG--MIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++A+DEAHCIS WGHDFRP YR L LR P +P++ALTATA
Sbjct: 133 EQLLEWQP----AMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L NPL+ SSF+RPN+ Y + +YK L L ++ IVYC
Sbjct: 189 RNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPL-----DQLWLFIRGQKGKSGIVYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E+S L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSRVEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HFNIP+++E++YQE+GRAGRD LP++++L+Y D + L + + Q
Sbjct: 304 NVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKEVGTQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|196005803|ref|XP_002112768.1| hypothetical protein TRIADDRAFT_25695 [Trichoplax adhaerens]
gi|190584809|gb|EDV24878.1| hypothetical protein TRIADDRAFT_25695 [Trichoplax adhaerens]
Length = 388
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 227/367 (61%), Gaps = 14/367 (3%)
Query: 30 LRWHFGHAQFRD--KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG+ F+ ++ I+ D F MPTGGGKS+CYQ+PA+ PG+ +V SPL
Sbjct: 15 LKTVFGYDSFKSPVQEKAVIEIAARKTDVFVSMPTGGGKSLCYQLPAILHPGVTVVFSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+ +Q+ L+ GI + ++S + + +DL +P++RLLYVTPEL AT F
Sbjct: 75 IALIYDQIDHLQNVGICSKTINSKMAETDRNAVIKDLHDPEPTIRLLYVTPELAATSDFK 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
LK + R LN IDEAHC+S WGHDFRP YRKL +LR Y P VPI+ALTATA V
Sbjct: 135 RLLKHLFDRSRLNYFTIDEAHCVSHWGHDFRPDYRKLGNLREYFPSVPIIALTATANKTV 194
Query: 208 QKDVMESL-CLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-----------KA 255
Q+DV++SL + +SS R NL+Y+V +KDLL DA +L + +
Sbjct: 195 QEDVIKSLHFRSSFQSFRSSCFRSNLYYDVIFKDLLTDALDNLRNFVLSSISGSIALNST 254
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ C I+YC R CD +S L+ GISC +YHAGL+ K R + +W+ +V+VAT
Sbjct: 255 SSQGCGIIYCRTRDDCDNISDKLAGYGISCKSYHAGLSGKIREQIQREWMDGIVKVIVAT 314
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ VR V H+ +PKSME++YQESGRAGRD + LYY ++R ++++L
Sbjct: 315 ISFGMGVDKASVRFVAHWCLPKSMESYYQESGRAGRDGKLAFCRLYYSREERNVVQYLLK 374
Query: 376 KNQSKNS 382
K + S
Sbjct: 375 KEVKRQS 381
>gi|150004558|ref|YP_001299302.1| ATP-dependent DNA helicase [Bacteroides vulgatus ATCC 8482]
gi|294776076|ref|ZP_06741571.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|423312434|ref|ZP_17290371.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149932982|gb|ABR39680.1| putative ATP-dependent DNA helicase [Bacteroides vulgatus ATCC
8482]
gi|294450068|gb|EFG18573.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|392688918|gb|EIY82202.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 605
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 228/359 (63%), Gaps = 13/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+++ L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK +++SQ
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSKFATESSQ 347
>gi|224535963|ref|ZP_03676502.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|423226021|ref|ZP_17212487.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
gi|224522418|gb|EEF91523.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|392630878|gb|EIY24859.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
Length = 727
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMIDAEVFKSSFNRPNLYYEVRPK--TNNIDRDIIKFIKNNSEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|404406052|ref|ZP_10997636.1| ATP-dependent DNA helicase RecQ [Alistipes sp. JC136]
Length = 730
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 225/356 (63%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALLMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ E GIA FL+S+ ++ D+ +GK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSAESGIA-HFLNSSLNKTAVAQVRADVLAGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGAAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRANLYYEIRPKRNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ DD++ R +V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDAVTRAANQDDFLMERVEVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE 348
>gi|291410501|ref|XP_002721547.1| PREDICTED: Bloom syndrome protein [Oryctolagus cuniculus]
Length = 1414
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H K+ ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 653 HTKD-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGV 711
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 712 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEK 771
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 772 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 831
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 832 TATANPRVQKDILTQLKIVRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 892 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 951
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 952 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLILMEK 1011
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1012 DGNQHTRET 1020
>gi|213408509|ref|XP_002175025.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
gi|212003072|gb|EEB08732.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
Length = 1283
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 254/413 (61%), Gaps = 23/413 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
L+ LR F FR Q++AI L+G+D F LMPTGGGKS+CYQ+PA+ + G +
Sbjct: 467 LMHTLRTKFQLKGFRKNQIEAINGTLAGKDVFVLMPTGGGKSLCYQLPAVMETGNSRGVT 526
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPL++LM++Q+ L++ I LS Q + ++ L + K ++LLYVTPE
Sbjct: 527 LVISPLLSLMQDQLEHLRKLNIPALPLSGEQPSDERKQVISFLMAKKVQVKLLYVTPEGL 586
Query: 142 ATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
A+ G +S+ L+ +++R LL + IDEAHC+S WGHDFRP Y++L LR+ VP++ALT
Sbjct: 587 ASNGAISRVLESLYTRKLLARIVIDEAHCVSHWGHDFRPDYKQLGILRDKYRGVPVMALT 646
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--D 258
ATA V+KDV+ +L ++N + +KSSFNRPNL+YE++ K D +A++ + +NG D
Sbjct: 647 ATANEIVKKDVITTLRMENCIEMKSSFNRPNLYYEIKPK---KDVFAEMHRFI-SNGRLD 702
Query: 259 TCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL RT+C++++A L + G+ YHAGL+ R + W + +V+VAT+A
Sbjct: 703 QSGIIYCLSRTSCEQVAAKLRNEYGLKAWHYHAGLDKAERQRIQSSWQAGIYKVIVATIA 762
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + +++
Sbjct: 763 FGMGVDKGDVRYVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDSITFQKLITSG 822
Query: 378 QSKNSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWDV 421
+ R+R + + F Q+L G+ F + L NR D+
Sbjct: 823 EG--DAETKERQRQMLRQVIQFCENKSDCRRKQILSYFGESFDKALCNRGCDI 873
>gi|389806094|ref|ZP_10203234.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
gi|388446093|gb|EIM02139.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
Length = 611
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/364 (42%), Positives = 229/364 (62%), Gaps = 9/364 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +VVSP
Sbjct: 7 LELLQSVFGYPSFRGQQQAVVEHLAEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSP 66
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A +L+S+ + + ++ L +G+ L LLYV PE T F
Sbjct: 67 LIALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGE--LNLLYVAPERLLTSRF 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L+ I + L AIDEAHC+S WGHDFRP YR+L L P VP +ALTATA P+
Sbjct: 125 LGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELVVLHQRFPQVPRIALTATADPR 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+++++E L LQ SSF+RPN+ Y V L +A L L+ + D IVYCL
Sbjct: 181 TREEIVERLALQEARRFVSSFDRPNIGYRV---GLRHNAKRQLAEFLQGHQDESGIVYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGID+ D
Sbjct: 238 SRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPD 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + +
Sbjct: 298 VRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESDDERKRV 357
Query: 387 TRER 390
R++
Sbjct: 358 ERQK 361
>gi|170092068|ref|XP_001877256.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648749|gb|EDR12992.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 758
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 177/526 (33%), Positives = 271/526 (51%), Gaps = 54/526 (10%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSP 86
++L FGH ++ KQ + ++A SGRD + PTG GKS+C+Q+PALA + G +VVSP
Sbjct: 14 RILTQTFGHTAYKGKQKEIVEAAASGRDVLVVAPTGMGKSLCFQVPALAAEHGTTIVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM+NQV L+ KG+ +S T + K I +D+ S +P +RLLYVTPE T F
Sbjct: 74 LLALMKNQVDNLRSKGVPVAAFTSETTKEEKKGIIKDMSSSRPKIRLLYVTPEKLLTQEF 133
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L+ + LNL+ +DEAHC+S WGHDFRP YR++ R +PI+ALTATA
Sbjct: 134 QPLLEGLFDDEQLNLLVVDEAHCVSEWGHDFRPEYRRIGEFREKYVGIPIMALTATATEA 193
Query: 207 VQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRY------KDLLDDAYADLCSVLKANGD 258
VQ+D++ SL + N FNR NL+Y+++Y + + D + + ++ + G
Sbjct: 194 VQEDIVRSLKMSKDNLFCALHPFNRDNLYYQIKYLSAPDDRSKMADVFDYITTLYRRRGR 253
Query: 259 -TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV------ 311
+ I+YC +R TCDELS+YL G+S YH G+ + L W
Sbjct: 254 ASSGIIYCRKRVTCDELSSYLRGKGLSARPYHRGIGSATLDATLKRWTGGGSGEEGSVDL 313
Query: 312 -----------------VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
V+AT+AFG+GID+ DVR + H+++PKS E +YQE+GRAGRD L
Sbjct: 314 VSFSHNYAHISTGIFLKVIATIAFGLGIDKGDVRYIIHYDVPKSFEGYYQETGRAGRDGL 373
Query: 355 PSKSLLYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFS 411
PSK +LYY +D +R+ I + N+ K + + SIS Q + +
Sbjct: 374 PSKCILYYSREDALYSKRLATISNANRVKEDNEGLPPTQRAIDSISALIQFAESS----- 428
Query: 412 RVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + I + + L+K + C CD CK+PN + + + L
Sbjct: 429 --------TICRHVSICRYFGEAIDVTDKELVK----TFCNRMCDVCKYPNKVQQQISNL 476
Query: 472 TSAVLQKNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSEEDISD 516
+S + I ++Q+ G + W ++++ S D
Sbjct: 477 SSLEHASSRVDGYIIKAAQNNAHSGGDQQAWQKNNQRPQSRNSFGD 522
>gi|406901072|gb|EKD43834.1| hypothetical protein ACD_72C00100G0005 [uncultured bacterium]
Length = 619
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/359 (43%), Positives = 233/359 (64%), Gaps = 12/359 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q + IQ ++ RD F LMPTGGGKS+CYQIPAL G+ +V+SPL
Sbjct: 6 QILKTKFGYESFRFNQEEIIQTIMQKRDAFVLMPTGGGKSLCYQIPALLFDGLTVVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPG 145
IALM++QV L+ GI +++S+ + +YE LD + ++LLYV+PE L
Sbjct: 66 IALMKDQVDALRLNGIKAAYMNSSMDSDEISDLYEQLD--RHEIKLLYVSPERLLGNNQQ 123
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L+ ++ ++L AIDEAHCISSWGHDFRP YR LSSL+ PDVP +ALTATA
Sbjct: 124 FLVYLRDLN----ISLFAIDEAHCISSWGHDFRPEYRMLSSLKKDFPDVPTIALTATADN 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NP + SSFNRPN+ Y V K + Y ++ S LK + I+Y
Sbjct: 180 LTRDDILNKLKLKNPSIFVSSFNRPNINYSVEPKRKM---YEEIVSYLKKHRSDSGIIYV 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R + ++++ L G S YHAGLN++ R + +I + +++VAT+AFGMGI++
Sbjct: 237 LSRNSAEKMAEKLKKDGFSTKPYHAGLNNEKRQRHQEMFIKDQVKIMVATIAFGMGINKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY-GMDDRRRMEFILSKNQSKNSQ 383
+VR V H ++PK++E++YQE+GRAGRD L S+++LYY G D + F + +N + ++
Sbjct: 297 NVRFVIHADLPKNIESYYQETGRAGRDGLKSEAILYYSGGDVVKLKRFAMVENNPEQTR 355
>gi|198276249|ref|ZP_03208780.1| hypothetical protein BACPLE_02441 [Bacteroides plebeius DSM 17135]
gi|198270691|gb|EDY94961.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 611
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 221/344 (64%), Gaps = 7/344 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+E ++K L+ +FG+ FR Q I +L +D LMPTGGGKSMCYQ+PAL G +
Sbjct: 2 REQMLKTLKSYFGYTSFRPLQEKIISTILQKKDALVLMPTGGGKSMCYQLPALLMEGTTV 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L+ GI L+ST ++Y + G+ ++LLY++PE
Sbjct: 62 VVSPLISLMKDQVESLQANGIVARALNSTNDDATNAQLYFECLQGR--VKLLYISPER-- 117
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
MS++ + ++L AIDEAHCIS WGHDFRP Y +L ++R Y P+VP++ALTAT
Sbjct: 118 ---LMSEMNYLLRDINISLFAIDEAHCISHWGHDFRPEYTQLKAIRQYFPNVPVVALTAT 174
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A ++D++ L ++NP + SSF+RPNL EV+ + + L+ + + I
Sbjct: 175 ADKITREDIIRQLEMRNPEIFISSFDRPNLSLEVKRGYQQKEKIKAIVKFLRRHRNESGI 234
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC+ R ++++ L G AAYHAG++++ R DD+I+ R Q++ AT+AFGMGI
Sbjct: 235 IYCMSRNGTEKVAQLLEKEGFDVAAYHAGMSNEQREITQDDFINDRVQIICATIAFGMGI 294
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
D+ +VR V H+N+PKS+E FYQE GRAGRD LPS++LL+Y D
Sbjct: 295 DKSNVRWVIHYNLPKSIENFYQEIGRAGRDGLPSETLLFYSFGD 338
>gi|427733629|ref|YP_007053173.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
gi|427368670|gb|AFY52626.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
Length = 719
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 235/361 (65%), Gaps = 7/361 (1%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG+ FR Q + I L RD +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 11 LKHHFGYDSFRSPQREIIVEALENRDLLVIMPTGGGKSLCFQLPALMKEGLTVVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED-LDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV GL++ GI FL+S+ + K ++ E + +GK ++LLYV PE + F+
Sbjct: 71 LMQDQVDGLRKNGIPATFLNSSVSPH-KVRMREQAILAGK--VKLLYVAPERLLSERFLP 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +H + ++ AIDEAHC+S WGHDFRP YR++ SLR P+VPI ALTATA +V+
Sbjct: 128 LLDLVHHQIGISAFAIDEAHCVSEWGHDFRPEYRQMISLRQRYPNVPIWALTATATERVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+++ L L+ P V +SFNR NL+YEVR K ++Y +L +++ N + I+YCL R
Sbjct: 188 LDIIKQLGLKQPNVHIASFNRQNLYYEVRPKK--KNSYVELLGLIQDN-EGSGIIYCLTR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+EL+ L IS YHAGL+D RS +I +++VAT+AFGMGI++ DVR
Sbjct: 245 KKVEELAFKLQHDKISALPYHAGLSDVERSENQTKFIRDDARIIVATIAFGMGINKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H++I +++E++YQESGRAGRD S+ +L+ D + +E+++ + ++ Q +
Sbjct: 305 FVVHYDISRNLESYYQESGRAGRDGESSRCMLFLSYSDVKTIEWLIDQKSNEQEQMIAKH 364
Query: 389 E 389
+
Sbjct: 365 Q 365
>gi|37522198|ref|NP_925575.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
gi|35213198|dbj|BAC90570.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
Length = 746
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 235/365 (64%), Gaps = 4/365 (1%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+ + L + L+ HFGH +FR Q ++ ++G D LMPTGGGKS+ YQ+PAL PG+
Sbjct: 14 DDQKLGEALKRHFGHERFRPGQRRIVELAIAGHDQLILMPTGGGKSLTYQLPALLLPGLT 73
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLIALM +QV L+E GIA FL+ST +T+ + + G+ ++LLY++PE
Sbjct: 74 VVVSPLIALMHDQVDRLRENGIAATFLNSTLAAGERTRREQAIAQGR--MKLLYLSPERL 131
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ ++ L+ + +G L+L+A+DEAHC+S WGHDFRP YR+L+++R +P LALTA
Sbjct: 132 LSEECLAFLEYVQRQGGLSLLAVDEAHCVSEWGHDFRPEYRQLAAVRERFAALPTLALTA 191
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D++ L L++P + +SF+RPNL Y V KD AYA+L L+ A
Sbjct: 192 TATERVRQDILVQLKLRDPHIHIASFDRPNLHYAVLAKD--KGAYAELLGRLRRLDGASA 249
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R + L+ L A G++ YHAG+ + RS ++ V+VATVAFGMG
Sbjct: 250 IVYCQSRRAVEALAERLVADGLNALPYHAGMAAEMRSRHQTQFLRDDAPVLVATVAFGMG 309
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I + DVR V H+ +P+++E +YQESGRAGRD P+ +L++ DR ++E+++++ +
Sbjct: 310 IAKPDVRAVFHYELPRNLEGYYQESGRAGRDGQPADCVLFFSPGDRAKIEYLVAQKSDPH 369
Query: 382 SQSFS 386
Q +
Sbjct: 370 EQRLA 374
>gi|172036703|ref|YP_001803204.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|354554517|ref|ZP_08973821.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
gi|171698157|gb|ACB51138.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|353553326|gb|EHC22718.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
Length = 711
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/394 (39%), Positives = 238/394 (60%), Gaps = 8/394 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L++ FG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL K G+ +VV
Sbjct: 7 SLENALKYFFGYDQFRSGQKQIINEALNNKDLLVIMPTGGGKSLCFQLPALLKSGVCIVV 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L + GI FL+ST + + GK ++LLYV PE
Sbjct: 67 SPLIALMQDQVDTLLDNGIGATFLNSTLNREELQSRENAILKGK--IKLLYVAPERLLND 124
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F++ L + + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP+ ALTATA
Sbjct: 125 NFLNFLDFLRQKVGLSGFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPQVPMFALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L LQNP V +SF+RPNL+YEV+ K +Y L + +++ + I+Y
Sbjct: 185 KRVRADIIEQLGLQNPTVHVASFDRPNLYYEVQEKS--RRSYTQLLNYVRSQ-EGSGIIY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++ L GI YHAG+ D R+ +I +++VAT+AFGMGI++
Sbjct: 242 CLSRKNVETIAFRLQQDGIEALPYHAGMYDDERAVNQTRFIRDDVRIIVATIAFGMGINK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ L++ D +R+E+++ + + Q
Sbjct: 302 PDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQR 361
Query: 385 FSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
R + + D+++ + R G +Y
Sbjct: 362 VG---RQQVRQVVDYAEGTECRRSIILRYFGQQY 392
>gi|325280334|ref|YP_004252876.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
gi|324312143|gb|ADY32696.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
Length = 727
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 217/346 (62%), Gaps = 13/346 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG F+ Q I+ VL+G + F LMPTGGGKS+CYQ+PAL G +++SPLIA
Sbjct: 11 LKEYFGFDHFKGNQEAIIKNVLAGNNTFVLMPTGGGKSLCYQLPALLLEGTAIIISPLIA 70
Query: 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ +G+A FL+S+ T + ED+ SGK ++LYV PE
Sbjct: 71 LMKNQVDAMRSFSAAEGVA-HFLNSSLTKNEILNVKEDILSGKT--KMLYVAPESLTKES 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LKKI ++ A+DEAHCIS WGHDFR YRK+ + + PI+ALTATA P
Sbjct: 128 NVEFLKKIK----ISFFAVDEAHCISEWGHDFRTEYRKIRPIVEEIGKAPIIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K + I+YC
Sbjct: 184 KVQNDIQKNLDMMDAQVFKSSFNRPNLYYEVRPKQ--GDVTKDIIKFIKNHEGKSGIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ LS GI A YHAG++ RS+ D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRKKVEELAEVLSINGIKAAPYHAGMDASTRSTNQDRFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H++IPKS+E +YQE+GRAGRD L YY D +++E
Sbjct: 302 DVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICLTYYSFKDIQKLE 347
>gi|443726019|gb|ELU13361.1| hypothetical protein CAPTEDRAFT_91032 [Capitella teleta]
Length = 579
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 219/354 (61%), Gaps = 8/354 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + R FG +FR QL A+ A L G DCF LMPTGGGKS+CYQ+PAL PG+ LV+S
Sbjct: 1 MFDIFRTIFGLNEFRHNQLQAVNAALLGHDCFILMPTGGGKSLCYQLPALVTPGVTLVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+++QV L + LSS + + + L P ++LLY+TPE + A+
Sbjct: 61 PLRSLIQDQVQRLCSLDVPATHLSSDVSPAQANQTFMLLHQKIPPVKLLYLTPEKIVASA 120
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
S L+ ++ R +L IDEAHC+S WGHDFRP Y+KL+ LR P VP++A+TATA
Sbjct: 121 KLNSVLENLYRRKMLARFIIDEAHCVSQWGHDFRPDYKKLNGLRERFPGVPMIAVTATAT 180
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCA 261
P+V+KD++ L + +P SFNR NL YEV + K L D + S +
Sbjct: 181 PRVRKDILHQLGMNSPKWFMQSFNRVNLKYEVLPKKPKSLTSDVINMIHSRF---SNQSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGM 320
IVYCL R CD +S L+ GI AYHAGL D RSSV W++ +VV AT+AFGM
Sbjct: 238 IVYCLSRRECDTVSTDLTKAGIQAKAYHAGLTDAQRSSVQQKWLNEDGCKVVCATIAFGM 297
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GID+ DVR V H+++PKS+E +YQESGRAGRD + + +L+Y D R+ ++
Sbjct: 298 GIDKPDVRFVVHYSLPKSIEGYYQESGRAGRDGILATCVLFYSYSDVSRLRRMI 351
>gi|319900082|ref|YP_004159810.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
gi|319415113|gb|ADV42224.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
Length = 727
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 222/353 (62%), Gaps = 13/353 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +
Sbjct: 5 KTNLTDQLKEYFGFDTFKGNQEAIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTGI 64
Query: 83 VVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
V+SPLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV P
Sbjct: 65 VISPLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDIVSGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 122 ESLTKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 178 LTATATPKVQHDIQKNLGMVDARVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNSE 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|428773638|ref|YP_007165426.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
gi|428687917|gb|AFZ47777.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
Length = 713
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 235/358 (65%), Gaps = 7/358 (1%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q +Q ++ +D +MPTGGGKS+C+Q+PAL K G+ +V+SPLI+
Sbjct: 8 LKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGVTIVISPLIS 67
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE-DLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L++ GI +L+ST + +TKI + D+ +GK ++LLY+ PE + F
Sbjct: 68 LMQDQVTALQDNGIGATYLNSTLNYE-QTKIRQRDILAGK--IKLLYLAPERLVSDTFQP 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + + AIDEAHCIS WGHDFR YR++ LR P VPI ALTATA +VQ
Sbjct: 125 FLVTLAQKIGIAAFAIDEAHCISEWGHDFRQEYRQMRYLRQQFPQVPITALTATATVRVQ 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++E L L+NP + + SFNR NL+YEV+ K+ AY L +++++ + IVYC+ R
Sbjct: 185 RDIIEQLNLRNPQIHRFSFNRQNLYYEVQEKE--RRAYNQLLHIIRSHQGS-GIVYCISR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ +E++ L G+S YHAGL+DK RS +I +++VATVAFGMGI++ DVR
Sbjct: 242 KSTEEIAERLVKDGVSALPYHAGLSDKVRSHYQTSFIRDDVRIMVATVAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
LV H+++P+++E++YQESGRAGRD + +L Y D++++ + + + + Q +
Sbjct: 302 LVVHYDLPRNIESYYQESGRAGRDGEKANCILLYSRGDKQKIHYFIRQKTNPQEQKIA 359
>gi|302337379|ref|YP_003802585.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
gi|301634564|gb|ADK79991.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
Length = 601
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 233/375 (62%), Gaps = 12/375 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG++ F+ Q + I A+L+GRD F MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 6 RILKSVFGYSSFKANQKEVINAILAGRDLFAAMPTGGGKSLCYQIPALLFDGLTVVVSPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GI FL+S+Q+ + T+ Y L G+ ++LLY++PE A GF
Sbjct: 66 IALMKDQVDAALSLGIPAAFLNSSQSQEDATETYRRLYRGE--IKLLYLSPERLAVDGFT 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++L A+DEAHC+S WGHDFRP Y L+ LR P VPI A TATA +V
Sbjct: 124 ERLAAFN----VSLFAVDEAHCLSEWGHDFRPDYLALAQLRTAFPTVPIAAFTATATVRV 179
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
Q+D++ L L++P +L++SFNR LFY+V K + + + + A+ D IVY L
Sbjct: 180 QEDIIRLLRLEDPFILRASFNRKELFYQVLPKT---EVLSQIAQYIGAHPDQSGIVYRLS 236
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R D+ YL GI YHAG++ R+ + + + QV+VAT AFGMGID+ ++
Sbjct: 237 RKDTDKTVDYLGKLGIRALPYHAGMDKDERARNQERFNNDDVQVIVATTAFGMGIDKNNI 296
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PKSME +YQE+GRAGRD L S+ +L++G D R+ + + + + Q
Sbjct: 297 RYVIHGDLPKSMEGYYQETGRAGRDGLESQCILFFGTADIARLNYFIRQIEDPAEQR--- 353
Query: 388 RERSSKKSISDFSQV 402
R R + ++ F+ V
Sbjct: 354 RSRENLDRMARFASV 368
>gi|145220257|ref|YP_001130966.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
gi|145206421|gb|ABP37464.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
Length = 622
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 230/366 (62%), Gaps = 10/366 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+ E EA+ L+ FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+PA+ P
Sbjct: 11 PVSE-EAMHDALQKVFGFKGFRPNQREVVRALLDGRDVFAVMPTGGGKSLCYQLPAVLLP 69
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G +V+SPLIALM++QV G + GI +L+S+ ++ + K+ ++L+SG SL LLYV P
Sbjct: 70 GTCMVISPLIALMKDQVDGARANGIRAAYLNSSLSLADRRKVLDELESG--SLDLLYVAP 127
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E A F + K+ +++ IDEAHCIS WGHDFRP Y +LSSL DVP+
Sbjct: 128 ERFALDSFRKLIGKVP----VSMAVIDEAHCISEWGHDFRPDYLQLSSLVTMFRDVPVAG 183
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +VQ D + L L+ P +++SF+RPNL Y V +KD +D A + S+L+A+
Sbjct: 184 FTATATQRVQLDTLRRLALREPFTVRASFDRPNLTYSVLFKDGVD---AQIVSLLRAHSG 240
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+Y R + ++ +A L A G AYHAGL D+ R + +I V+VAT+AF
Sbjct: 241 KAGIIYRTSRKSVNDTAAMLQAKGFRALAYHAGLGDEERERNQNAFIRDEVDVIVATIAF 300
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ ++R V H ++PKS+E +YQE+GRAGRD P+ L + D+ ++ F + +
Sbjct: 301 GMGIDKSNIRFVIHADMPKSIENYYQETGRAGRDGEPAHCTLLFSQGDQAKLRFFIDTME 360
Query: 379 SKNSQS 384
+ ++
Sbjct: 361 DEGEKA 366
>gi|347800747|ref|NP_001007088.2| Bloom syndrome protein homolog [Gallus gallus]
Length = 1380
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/393 (43%), Positives = 232/393 (59%), Gaps = 11/393 (2%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 594 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 653
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 654 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIASTYLTGDITDAD 713
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ +++R LL IDEAHC+S WGH
Sbjct: 714 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGH 773
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 774 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 833
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 834 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 893
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 894 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 953
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
S LL+Y D R+ ++ + NS + T
Sbjct: 954 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQT 986
>gi|374385551|ref|ZP_09643054.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
gi|373225253|gb|EHP47587.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
Length = 735
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 222/356 (62%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHEK L+ +FG F+ Q I+ VL+G++ F LMPTGGGKS+CYQ+PAL G
Sbjct: 18 LHEK------LKEYFGFDNFKGNQEAIIRNVLAGKNTFVLMPTGGGKSLCYQLPALILDG 71
Query: 80 IVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ +G+A FL+S+ T K+ ED+ GK +LLY
Sbjct: 72 TAIVISPLIALMKNQVDAMRSFSAAEGVA-HFLNSSLTKNEILKVKEDILEGKT--KLLY 128
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LKKI ++ A+DEAHCIS WGHDFR YRK+ + + P
Sbjct: 129 VAPESLTKDSNVEFLKKIK----ISFFAVDEAHCISEWGHDFRTEYRKIRPIVEQIGKAP 184
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
I+ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K+ D D+ +K
Sbjct: 185 IIALTATATPKVQHDIQKNLDMLDAEVFKSSFNRPNLYYEVRPKN---DPTKDIIKFIKK 241
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ I+YCL R +EL+ L GI A YHAG++ RS+ D ++ V+VAT
Sbjct: 242 HEGKSGIIYCLSRKKVEELAEVLCINGIKAAPYHAGMDATTRSANQDKFLMEEVDVIVAT 301
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + YY D +++E
Sbjct: 302 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICITYYSYKDIQKLE 357
>gi|300721460|ref|YP_003710735.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
gi|297627952|emb|CBJ88501.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
Length = 608
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/341 (46%), Positives = 220/341 (64%), Gaps = 13/341 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ LR FG+ QFR Q I AVL G DC +MPTGGGKS+CYQIPAL K G+ LVVSPL
Sbjct: 15 QTLRKTFGYQQFRPGQQQVIDAVLDGLDCLVVMPTGGGKSLCYQIPALVKDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ E L+STQ+ + + I + G S++LLY+ PE T F+
Sbjct: 75 ISLMKDQVDQLRANGVEAECLNSTQSREQQFDIIQRCRQG--SIKLLYIAPERLVTDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L ++A+DEAHCIS WGHDFRP YR L LR P++P++ALTATA
Sbjct: 133 EQLHDWRP----VVLAVDEAHCISQWGHDFRPEYRALGQLRRRFPNLPVIALTATADNTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L P++ SSF+RPN+ Y + +YK L L S ++A I+YC
Sbjct: 189 RQDIVRLLELHEPIIHLSSFDRPNIRYTLVEKYKPL-----DQLWSFVRAQQGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
RT +E + L G+S A YHAGL + R+ V D + Q+VVATVAFGMGI++
Sbjct: 244 NSRTKVEETAERLQKRGLSVAPYHAGLENDQRAWVQDAFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V HFNIP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 304 NVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPAD 344
>gi|290490724|dbj|BAI79322.1| BLM helicase [Gallus gallus]
Length = 1380
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/393 (43%), Positives = 231/393 (58%), Gaps = 11/393 (2%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 594 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 653
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 654 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 713
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 714 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 773
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 774 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 833
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 834 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 893
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 894 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 953
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
S LL+Y D R+ ++ + NS + T
Sbjct: 954 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQT 986
>gi|255690572|ref|ZP_05414247.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|423301599|ref|ZP_17279622.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
gi|260624034|gb|EEX46905.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|408471592|gb|EKJ90123.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
Length = 726
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +LSG+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIIQNLLSGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIEQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKRVEELAEILQANGINARPYHAGMDSVTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|121603031|ref|YP_980360.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
gi|120592000|gb|ABM35439.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
Length = 639
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/378 (43%), Positives = 230/378 (60%), Gaps = 18/378 (4%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M PL+ S ++P + +L FG++ FR Q ++ V++G D LM
Sbjct: 1 MSGPPLSSLPISSAPSDQP-----TPLDVLGQVFGYSDFRGPQQAIVEHVIAGGDALVLM 55
Query: 61 PTGGGKSMCYQIPALAKP----GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
PTGGGKS+CYQIPA+A+ G+ +V+SPLIALM +QV L E G++ FL+STQT +
Sbjct: 56 PTGGGKSLCYQIPAIARQNAGHGVTIVISPLIALMHDQVGALLEAGVSAAFLNSTQTFEE 115
Query: 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176
+++ + L + L LLY PE TP L +H RGLL+L AIDEAHC+S WGHD
Sbjct: 116 SSQLEKQLL--RNELTLLYAAPERINTPRMKGLLASLHERGLLSLFAIDEAHCVSQWGHD 173
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP YR LS L PDVP +ALTATA ++D++E L L++ + SSF+RPN+ Y +
Sbjct: 174 FRPEYRSLSLLHETFPDVPRMALTATADALTRQDMIERLKLEDARLFLSSFDRPNIRYTI 233
Query: 237 RYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
K DA L ++A + IVYC R +E++ L GI AYHAGL+ K
Sbjct: 234 VEK---TDATRQLLRFIQAEHHGEAGIVYCQSRKRVEEIAGMLEDAGIKAMAYHAGLDAK 290
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355
R D ++ V+VAT+AFGMGID+ DVR V H ++PK++E +YQE+GRAGRD LP
Sbjct: 291 LRQQRQDRFLREDGCVMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLP 350
Query: 356 SKSLLYYGMDD---RRRM 370
+ + + YG+ D +RRM
Sbjct: 351 ADAWMVYGLQDVVNQRRM 368
>gi|348027736|ref|YP_004870422.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
gi|347945079|gb|AEP28429.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
Length = 627
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/360 (42%), Positives = 228/360 (63%), Gaps = 13/360 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
T K+ + K+L+ FG+++FR Q++ I VL+G+D L+PTGGGKS+CYQ+P
Sbjct: 23 TAKSAEGQHNQQCAKILKDTFGYSEFRPGQMEVIDKVLNGQDTLILLPTGGGKSLCYQVP 82
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
AL GI +VVSPLI+LM++QV L +G+ +L+S+Q + KI E L +G+ L L
Sbjct: 83 ALVLEGITIVVSPLISLMQDQVQQLTAQGVNAAYLNSSQDAEQSQKITEQLYNGE--LDL 140
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE F++ L++++ ++L+A+DEAHC+S WGHDFR YR+L L+++ +
Sbjct: 141 LYVAPERLLQSYFLNSLQRVN----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSHFDN 196
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCS 251
VP +ALTATA Q D+ L L NP V K F+RPN+ Y + +YK + + +
Sbjct: 197 VPFIALTATADHATQVDIQHQLQLDNPFVFKGGFDRPNIRYNLLAKYK-----GFEQVVT 251
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+K IVYC R D+L+ L + GI C AYHAG + R V ++ QV
Sbjct: 252 FVKQQEGAAGIVYCNSRAKVDDLTQRLQSAGIKCDAYHAGHDTATREFVQTQFLKDDLQV 311
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VVATVAFGMGI++ +VR V H ++P+S+E++YQE+GRAGRD +P+++LL + D R++
Sbjct: 312 VVATVAFGMGINKSNVRFVVHHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIK 371
>gi|163787884|ref|ZP_02182330.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159876204|gb|EDP70262.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 733
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 222/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ Q + I+ V++G + F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFSAFKGLQEEVIKNVVAGNNTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +VK ++ +D+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRAVSDHDGVAHVLNSSLNKTEVK-RVKDDIVNG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAA 204
++ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D+PI+ LTATA
Sbjct: 129 YVEFLRTVK----ISFMAVDEAHCISEWGHDFRPEYRNLKTIIKRIGDDIPIVGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D+++SL + N + K+SFNRPNL+YEVR K + AD+ +K N IVY
Sbjct: 185 PKVQEDILKSLGMPNAVTFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNDGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+ YHAGL+ K R D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMS 353
>gi|455737381|ref|YP_007503647.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
gi|455418944|gb|AGG29274.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
Length = 608
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/336 (46%), Positives = 222/336 (66%), Gaps = 13/336 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ QFR Q D I V GRDC +MPTGGGKS+CYQIPAL PG+ +VVSPLI
Sbjct: 16 ILRQVFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ G+ +L+S QT Q + K+ E + + ++LLYV PE F+
Sbjct: 76 SLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNR--IKLLYVAPERLLMSSFIR 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L++ +L+A+DEAHCIS WGHDFRP Y + LR +LP VP++ALTATA +
Sbjct: 134 QLQQWQP----SLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D+ L L +PL+ SSF+RPN+ Y + +YK A+ L ++ C I+YC
Sbjct: 190 SDICSRLRLSDPLIHISSFDRPNIRYTLVEKYK-----AFDQLWMFVRGQKGQCGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++++A L G+S AAYHAGL++ R V D ++ QVVVATVAFGMGI++ +
Sbjct: 245 SRNKVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
VR V HF+IP+++E++YQE+GRAGRD + ++++L+Y
Sbjct: 305 VRFVAHFDIPRNIESYYQETGRAGRDGVSAEAVLFY 340
>gi|429741035|ref|ZP_19274704.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
gi|429159704|gb|EKY02201.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
Length = 725
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 222/349 (63%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG QF+ Q + I+ L GRD F LMPTGGGKS+CYQ+PAL G +++S
Sbjct: 6 LPRALKEYFGFDQFKGNQREIIEQTLQGRDTFVLMPTGGGKSLCYQLPALLMDGTAVIIS 65
Query: 86 PLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV ++ E+ FL+S+ + ++ +D+ +G+ +LLYV PE
Sbjct: 66 PLIALMKNQVDAVRGFCEEDTVAHFLNSSLSRAKLEEVKQDVRAGRT--KLLYVAPESLH 123
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L+++ ++ A+DEAHCIS WGHDFRP YRK+ SL + + PI+ALTAT
Sbjct: 124 KQENIDLLREVP----ISFYAVDEAHCISEWGHDFRPEYRKIRSLVSEIAPRPIMALTAT 179
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A PKVQ D+M++L +++ +V +SSFNRPNL Y++R K D D+ + AN I
Sbjct: 180 ATPKVQHDIMKNLGIEDAVVFQSSFNRPNLLYQIRPKTA--DVDRDIVRYILANPKKSGI 237
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC+ RT + L+ L A GI YHAGL K R D +I R V+VAT+AFGMGI
Sbjct: 238 VYCMRRTRVETLAQVLQANGIKALPYHAGLEAKERMENQDAFIEERVDVIVATIAFGMGI 297
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H+++PKS+E +YQE+GRAGRD + YY ++ ++E
Sbjct: 298 DKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGVCIAYYDPNELEKLE 346
>gi|126662148|ref|ZP_01733147.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
gi|126625527|gb|EAZ96216.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
Length = 731
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 224/354 (63%), Gaps = 13/354 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q ++++++G + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKKYFGFSQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS ++ + +D+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSSEYGIAHVLNSSLNKTEI-ANVKKDITSG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L + ++ VAIDEAHCIS WGHDFRP YR L ++ L DVP++ LTA
Sbjct: 125 TKEEYIEFLNSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRNIVRLLGDVPMIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K +
Sbjct: 181 TATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E LS
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFLS 352
>gi|356528815|ref|XP_003532993.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1160
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 256/447 (57%), Gaps = 18/447 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL +PGI LV+SPL++L+++
Sbjct: 406 FGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQD 465
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I +LS+ + +I +L+S +LLYVTPE A + + L
Sbjct: 466 QIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDN 525
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H R LL + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 526 LHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 585
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N ++ + SFNRPNL+Y V K D+ ++ N D C I+YCL R C
Sbjct: 586 QALGLVNCIIFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIRVNHFDECGIIYCLSRMDC 643
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++++ L G CA YH ++ R+SV W ++ ATVAFGMGI++ DVR V
Sbjct: 644 EKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVI 703
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYY D R++ +LS+ + S S RS
Sbjct: 704 HHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYNRS 763
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ + ++L+ + R++ DV L H ++ S C
Sbjct: 764 ---NMINSGRILETNTENLVRMVSYCENDV----------DCRRLLQLAHFGEKFNSSTC 810
Query: 452 KNSCDAC-KHPNLLAKYLGELTSAVLQ 477
+ +CD C K + + K + E+ + +++
Sbjct: 811 QKTCDNCLKITSFIEKDVTEIANQLVE 837
>gi|372209002|ref|ZP_09496804.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium S85]
Length = 734
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 218/350 (62%), Gaps = 13/350 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q D I++V G+D F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFNKFKGLQEDVIRSVAEGKDTFVIMPTGGGKSLCYQLPALMKEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ GIA SS +V K+ D+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISDNPGIAHVLNSSLNKTEV-AKVKSDIVNG--VTKLLYVAPESLTKDE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LKK ++ AIDEAHCIS WGHDFRP YR L + + DVPI+ LTATA P
Sbjct: 129 YVDFLKKQK----ISFFAIDEAHCISEWGHDFRPEYRNLRRIITRIGDVPIIGLTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D++++L + N K+SFNRPNLFYEVR K D +D+ ++ ++YC
Sbjct: 185 KVQEDIIKTLGMTNANTFKASFNRPNLFYEVRPK--TKDVTSDIIRFIRQRLGKSGVIYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GIS YHAGL+ K R+ D ++ V+VAT+AFGMGID+
Sbjct: 243 LSRKKVEEIAQTLQVNGISALPYHAGLDAKTRAKHQDMFLMEDVDVIVATIAFGMGIDKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E ++
Sbjct: 303 DVRFVIHHDIPKSLESYYQETGRAGRDDGEGYCLAFYSYKDIEKLEKFMA 352
>gi|374316651|ref|YP_005063079.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352295|gb|AEV30069.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
Length = 619
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/386 (40%), Positives = 239/386 (61%), Gaps = 14/386 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG+ FRD Q + I A+LSGRD F MPTGGGKS+CYQIPA+ G+ +V+SPL
Sbjct: 25 KILKTVFGYDSFRDNQKEVISAILSGRDVFTSMPTGGGKSLCYQIPAVMFEGLTVVISPL 84
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV KGIA FL+S+ + T+IY L + ++LLY++PE A G++
Sbjct: 85 IALMKDQVDDAVSKGIAASFLNSSLESKEITEIYARLH--RNEIKLLYISPERLAIDGYL 142
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+ ++ ++ AIDEAHC+S WGHDFRP Y L+ +R+ P VP+ TATA +V
Sbjct: 143 QWLQTLN----ISFFAIDEAHCLSEWGHDFRPDYLSLAQIRDAFPTVPLAGFTATATQQV 198
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
Q D++ L +++PL +++SFNR L+YEVR K + AD +K + + IVY +
Sbjct: 199 QDDIIRILKMRDPLTVRASFNRKELYYEVRQKTEILSQIADF---IKLHSEESGIVYRIS 255
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +AYL GI YHAGL+ + R+ D + + + V+VAT+AFGMGID+ ++
Sbjct: 256 RKDVEKTAAYLKTQGIKALYYHAGLSREERAKNQDLFNNDKADVIVATIAFGMGIDKSNI 315
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK-----NQSKNS 382
R V H ++ K+ME +YQE+GRAGRD L S ++++G D R ++ + + Q K
Sbjct: 316 RYVIHGDLSKNMEGYYQETGRAGRDGLASDCIMFFGAGDVARQQYFIEQIEDPAEQEKAK 375
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGK 408
S + R + + Q+L+ G+
Sbjct: 376 ASLNRIVRFATVQVCRRKQILEYFGE 401
>gi|17366086|sp|Q9I920.1|BLM_CHICK RecName: Full=Bloom syndrome protein homolog; AltName: Full=RecQ
helicase homolog
gi|8567899|dbj|BAA96742.1| Gd BLM [Gallus gallus]
Length = 1142
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/393 (43%), Positives = 231/393 (58%), Gaps = 11/393 (2%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
S LL+Y D R+ ++ + NS + T
Sbjct: 716 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQT 748
>gi|307566216|ref|ZP_07628664.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
gi|307345074|gb|EFN90463.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
Length = 727
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 217/349 (62%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ FG F+ +Q I +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LIEKLKHFFGFDNFKGEQESIILHLLAGNDIFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E FL+S+ + D+ GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVVNGISETDGVAHFLNSSLKKAEIDSVRNDIRVGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
++ LK I ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALTAT
Sbjct: 125 KEDNIAFLKTIK----VSFYAIDEAHCISEWGHDFRPEYRKIRTAIDEIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL ++ L KSSFNRPNL+YEVR+K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEGCLEFKSSFNRPNLYYEVRFKKNEDDTNKQIIRFIKQHSGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I AAYHAGL+ + RS D ++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILIANDIKAAAYHAGLDSETRSKTQDQFLMEDIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIAFYSRNDLKKLE 349
>gi|282600067|ref|ZP_05972875.2| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
gi|282566927|gb|EFB72462.1| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
Length = 603
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 168/370 (45%), Positives = 229/370 (61%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL KPGI LVVSPLI+LM++
Sbjct: 16 FGYQSFRPGQEAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKPGITLVVSPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E G+ ++LLYV PE T F +L
Sbjct: 76 QVDQLKLHGVEAACLNSSQTPLEQRQIMELCAEGR--IKLLYVAPERLLTDYFSQQLSSW 133
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 134 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRRTLPNVPVMALTATADEATRTDIIR 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PLV SSF+RPN+ Y + +YK L L +K IVYC RT
Sbjct: 190 LLELNDPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKSGIVYCNSRTKV 244
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL++ R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 245 EETAERLQKRGLSVAAYHAGLDNAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 304
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 305 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 361
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 362 KLNAIAAFAE 371
>gi|295133000|ref|YP_003583676.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981015|gb|ADF51480.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 731
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 224/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q D + +++ D F +MPTGGGKS+CYQ+PAL + G +VVS
Sbjct: 8 LHKQLKKYFGFSQFKGLQEDVVASIVHKNDTFVIMPTGGGKSLCYQLPALIEEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +VK ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRGISSEYGVAHVLNSSLNKTEVK-QVKEDIING--VTKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALT 200
++ LK+ ++ +AIDEAHCIS WGHDFRP YR L + + ++PI+ALT
Sbjct: 125 TKEDYVDFLKEQK----ISFLAIDEAHCISEWGHDFRPEYRNLRQIIKRIGENIPIIALT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNL+YEVR K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGIPKAKTFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNNGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI+ YHAGL+ K RS D ++ VVVAT+AFGM
Sbjct: 239 GIIYCLSRKKVEELAQTLQVNGINAIPYHAGLDAKTRSKHQDMFLMEEVDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS 353
>gi|332291549|ref|YP_004430158.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
gi|332169635|gb|AEE18890.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
Length = 696
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 224/351 (63%), Gaps = 12/351 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L LL+ HFG+ FR Q + I++V G D +MPTGGGKSMC+Q+PALA G+ LV
Sbjct: 5 QELHSLLKTHFGYDNFRPNQQEIIESVCRGDDALVIMPTGGGKSMCFQLPALALDGVALV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV L+ GI + +STQ ++ ++ DL SG ++ L+YV PE
Sbjct: 65 ISPLIALMKDQVDALRANGIRAAYYNSTQPLEETQQVLSDLQSG--AIDLIYVAPE---- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L + ++L+AIDEAHCISSWGHDFRP+Y +L L+ P P++ALTATA
Sbjct: 119 --SLQMLDGALNAATISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRFPQAPLIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
Q D+ + L + N SSF+RPNL+ +VR +D D L+ + I+
Sbjct: 177 DRSTQDDIADQLGISNAKKYVSSFDRPNLYLDVRPGQKRNDQILDF---LEEHPGESGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + + L+A L A G AAYHAG++ + RS V +D+I+ ++ AT+AFGMGID
Sbjct: 234 YCLSRKSTESLAAKLQANGYKAAAYHAGMHAEQRSKVQEDFINDTTPIICATIAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFI 373
+ +VR V H+N+PK++E +YQE GRAGRD LP+ +LL+Y D ++ +FI
Sbjct: 294 KSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLPAHTLLFYSYADTLQLRQFI 344
>gi|311746386|ref|ZP_07720171.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
gi|126575272|gb|EAZ79604.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
Length = 725
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 223/350 (63%), Gaps = 8/350 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+E + + L+ FG +QFR Q + +L R+ F +MPTG GKS+CYQ+PA+ G +
Sbjct: 2 EEKVKEDLKKIFGFSQFRGNQEPIVDNLLGHRNTFVIMPTGAGKSLCYQLPAVVSNGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV LK GI FL+ST TK+ ++ S K +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLKAIGINAHFLNSTLNKSESTKVKNEVLSKKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LK L+ VAIDEAHCIS WGHDFRP YRK+ ++ + P++PI+ALTA
Sbjct: 120 KEENIAFLKSAE----LSFVAIDEAHCISEWGHDFRPEYRKIKTIVAQIAPNLPIIALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNR NLFYEVR K + +++ L +K +
Sbjct: 176 TATPKVQQDIQRNLQMEEADLFKSSFNRTNLFYEVRPK-MKNESKKQLIKFIKNHKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L I+ A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAQLLQVNQINAAPYHAGLDSAIRIKNQDDFLNEELDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIVKLE 344
>gi|390953896|ref|YP_006417654.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
gi|390419882|gb|AFL80639.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
Length = 692
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/346 (43%), Positives = 224/346 (64%), Gaps = 21/346 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ LL+ HFG+ +F Q + I +L +D +MPTGGGKS+C+Q+PALA G +V+S
Sbjct: 9 IADLLKTHFGYDKFLPNQEEIINNILDQKDTIAIMPTGGGKSLCFQLPALALDGTAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK GI+ F +S+Q + + ++ ++L +G +L+LLYV PE
Sbjct: 69 PLIALMKDQVDALKANGISATFFNSSQPYEEQQQVLKELQNG--NLKLLYVAPESLPQLN 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ KI NL AIDEAHCISSWGHDFRP+Y +L SL+ P VP++ALTATA
Sbjct: 127 FILNSIKI------NLFAIDEAHCISSWGHDFRPAYTQLKSLKEQFPTVPLIALTATADR 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-----YKDLLDDAYADLCSVLKANGDTC 260
++D+ L + N +SF+RPNL+ +VR K +LD LK + D C
Sbjct: 181 ATREDIAAQLSIPNAKTFIASFDRPNLYLDVRPGQNRNKQILD--------FLKIHRDEC 232
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R + ++L+A LS+ G AYHAGL + R+ + +++I+ ++VAT+AFGM
Sbjct: 233 GIIYCLSRKSTEKLAATLSSKGYKAEAYHAGLTSEERTQIQENFINDVSPIIVATIAFGM 292
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
GID+ +VR V H+N+PK+++ +YQE GR+GRD LP+ ++L+Y D
Sbjct: 293 GIDKSNVRWVIHYNMPKNIDGYYQEIGRSGRDGLPAHTILFYSFAD 338
>gi|401626200|gb|EJS44156.1| sgs1p [Saccharomyces arboricola H-6]
Length = 1463
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 229/359 (63%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR Q++A+ A L+G+D F LMPTGGGKS+CYQ+PAL K G +
Sbjct: 680 LYRLHETFKLPGFRPNQIEAVNATLNGKDVFVLMPTGGGKSLCYQLPALVKSGKTHGTTI 739
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
VVSPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 740 VVSPLISLMQDQVEHLLNKNIKASMFSSKGTAEQRRQTFNLFING--LLDLVYISPEMIS 797
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 798 ASEQCKRAISRLYTDGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 857
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV+ K + ++C +K+N +
Sbjct: 858 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVKKK--TKNTIFEICDAVKSNFKNQT 915
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 916 GIIYCHSKKSCEQTSAQMQKNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 975
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 976 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKYSYCITYFSFRDIRTMQTMIQKDKN 1034
>gi|410095931|ref|ZP_11290923.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
gi|409227962|gb|EKN20857.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
Length = 727
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 228/356 (64%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K++L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P++ G
Sbjct: 1 MAKKDSLTEHLKTHFGFDTFKGNQKAIIENVLAGNDTFVLMPTGGGKSLCYQLPSIMMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKADIMAGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L+ ++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVEFLRNVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YEVR KD ++ ++ +KA
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEVRPKD--ENVDREIIKYIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N IVYCL R +E + L A GI AYHAG++ RS+ D ++ + V+VAT
Sbjct: 232 NEGKSGIVYCLSRKKVEEFADILKANGIKALAYHAGMDSGQRSANQDAFLLEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 347
>gi|315223920|ref|ZP_07865765.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
gi|314946092|gb|EFS98096.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
Length = 729
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 K 376
K
Sbjct: 355 K 355
>gi|389798157|ref|ZP_10201184.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
gi|388445812|gb|EIM01870.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
Length = 609
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 243/401 (60%), Gaps = 15/401 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + + LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +
Sbjct: 2 KASALDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L+E G+A +L+S+ + + ++ L +G+ L LLYV PE
Sbjct: 62 VVSPLIALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGE--LNLLYVAPERLL 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F L+ I + L AIDEAHC+S WGHDFRP YR+L+ L P VP +ALTAT
Sbjct: 120 TSRFQGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPQVPRIALTAT 175
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P+ +++++E L LQ+ SSF+RPN+ Y V L +A L L+ + I
Sbjct: 176 ADPRTREEIVERLSLQHARQFVSSFDRPNIGYRV---GLRHNAKRQLGEFLQGHQGESGI 232
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGI
Sbjct: 233 VYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGI 292
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S +
Sbjct: 293 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADE 352
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWP 423
R+R ++ + + G R +LG + +V+P
Sbjct: 353 -----RKRVERQKLESLLAYAEATGCRRQLLLGA-FGEVYP 387
>gi|389795781|ref|ZP_10198890.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
gi|388430112|gb|EIL87306.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
Length = 605
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 231/364 (63%), Gaps = 9/364 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQ+PAL + G +VVSP
Sbjct: 6 LDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQVPALLRQGTGIVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A FL+S+ + ++ L++G+ L LLYV PE T F
Sbjct: 66 LIALMQDQVDALREAGVAAAFLNSSLAAGEQREVERQLEAGE--LNLLYVAPERLLTGRF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+++L++ + L AIDEAHC+S WGHDFRP YR+L+ L+ P VP +ALTATA P+
Sbjct: 124 LAQLERTE----VALFAIDEAHCVSQWGHDFRPEYRELAILQERFPQVPRIALTATADPR 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+++++E L LQN SSF+RPN+ Y V L +A L L + IVYCL
Sbjct: 180 TREEIVERLSLQNARQFVSSFDRPNIGYRV---GLRHNAKRQLGEFLLGHQGESGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGID+ D
Sbjct: 237 SRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQKRFLREDGVVMVATVAFGMGIDKPD 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + +
Sbjct: 297 VRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRV 356
Query: 387 TRER 390
R++
Sbjct: 357 ERQK 360
>gi|422021069|ref|ZP_16367583.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
gi|414099974|gb|EKT61607.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
Length = 608
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 165/375 (44%), Positives = 233/375 (62%), Gaps = 16/375 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K GI LVVSPLI
Sbjct: 16 ILNSTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKDGITLVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ G+ L+S+QT + ++ + GK ++LLYV PE T F+S
Sbjct: 76 SLMKDQVDQLQLHGVNAACLNSSQTALEQREVMDACSQGK--IKLLYVAPERLLTDYFLS 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L S + L A+DEAHCIS WGHDFRP YR + LR + PDVP++ALTATA +
Sbjct: 134 HL----SNWNVALFAVDEAHCISQWGHDFRPEYRGMGQLRQHFPDVPVMALTATADETTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D++ L LQ+PL+ SSF+RPN+ Y + +YK L L +KA IVYC
Sbjct: 190 ADIIRRLDLQDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E + L G++ AYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +
Sbjct: 245 SRNKVEETAERLKKRGLTVEAYHAGLDNQQREWVQDAFLKDNIQIVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q
Sbjct: 305 VRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMHQDI- 363
Query: 387 TRERSSKKSISDFSQ 401
ER +I+ F++
Sbjct: 364 --ERHKLNAIAAFAE 376
>gi|420149707|ref|ZP_14656877.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394753188|gb|EJF36768.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 732
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 8 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 67
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 68 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 123
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 124 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 179
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 180 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 237
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 238 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 298 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 357
Query: 376 K 376
K
Sbjct: 358 K 358
>gi|420158748|ref|ZP_14665562.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
gi|394763235|gb|EJF45355.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
Length = 727
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEKYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 K 376
K
Sbjct: 353 K 353
>gi|253991584|ref|YP_003042940.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
gi|211638462|emb|CAR67084.1| atp-dependent dna helicase recq (ec 3.6.1.-) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783034|emb|CAQ86199.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
Length = 608
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 218/341 (63%), Gaps = 13/341 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I +L GRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIPALIQEGVTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A + L+STQ + + + G ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAADCLNSTQAREQQIDVIRRCRQG--MVKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++A+DEAHCIS WGHDFRP YR L LR P +P++ALTATA
Sbjct: 133 EQLLEWQP----AILAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L NPL+ SSF+RPN+ Y + +YK L L ++A I+YC
Sbjct: 189 RNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPL-----DQLWLFIRAQKGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E S L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSKVEETSERLQKRGLSVAPYHAGLDNNQRARVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V HFNIP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 304 NVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPAD 344
>gi|319643550|ref|ZP_07998171.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
gi|345518434|ref|ZP_08797885.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|254835825|gb|EET16134.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|317384814|gb|EFV65772.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
Length = 605
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 227/359 (63%), Gaps = 13/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILVQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+++ L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK +++SQ
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSKFATESSQ 347
>gi|381188984|ref|ZP_09896542.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379649120|gb|EIA07697.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 704
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/343 (46%), Positives = 220/343 (64%), Gaps = 11/343 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L + L+ +FG +FR Q I A+LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 5 QKLHETLKENFGFEKFRINQEQVINAILSGQDTLAIMPTGGGKSICFQLPALLFPGITIV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI +++S+QT + ++L + K ++L+YV PE
Sbjct: 65 ISPLIALMKDQVDSLKANGIQACYINSSQTDAEQQSHIQNLINNK--VKLVYVAPE---- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L+ + S+ L+L+AIDEAHCISSWGHDFRP+Y L L+ P PILALTATA
Sbjct: 119 --SLSYLENVFSQITLSLIAIDEAHCISSWGHDFRPAYTNLGYLKKRFPSTPILALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+KD+ + L L+ P SSF+R NL EVR D + + A IV
Sbjct: 177 DKATRKDISKQLNLKEPKSFISSFDRKNLSLEVRPAL---DRVKQIVDFISAKPRESGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L GI+ AYHAGL+ RS DD+I+ QVV AT+AFGMGID
Sbjct: 234 YCLSRKTTEELAEKLQKAGINAKAYHAGLDSTVRSKTQDDFINDDCQVVCATIAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H+N+PK++E +YQE GRAGRD LPS+++L+ D
Sbjct: 294 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSETILFESYGD 336
>gi|268592895|ref|ZP_06127116.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
gi|291311686|gb|EFE52139.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
Length = 608
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ L+S+QT Q + +I E G+ ++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGE--IKLLYVAPERLLTDYFLSQLAGW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L PLV SSF+RPN+ Y + +YK L L +K IVYC R+
Sbjct: 195 LLELHEPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+ R V D ++ QVVVATVAFGMGI++ +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLDAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|429750375|ref|ZP_19283426.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165304|gb|EKY07364.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 727
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHSALKHYFGFESFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISNGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGTNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLAMTDANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +EL+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 PKKSGIIYCLSRKKVEELTQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 K 376
K
Sbjct: 353 K 353
>gi|423239789|ref|ZP_17220905.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392645829|gb|EIY39552.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
Length = 605
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 227/359 (63%), Gaps = 13/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILTQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK +++SQ
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSKFATESSQ 347
>gi|443244229|ref|YP_007377454.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801628|gb|AGC77433.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 730
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 164/359 (45%), Positives = 222/359 (61%), Gaps = 20/359 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ +FG QFR Q I ++L+ DCF +MPTGGGKS+CYQ+PAL + G +VV
Sbjct: 7 GLEENLKKYFGFEQFRGLQKQVITSLLNKEDCFVIMPTGGGKSLCYQLPALMQEGTAIVV 66
Query: 85 SPLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
SPLIALM+NQV ++ G+A LS T QVK +D+++G +LLYV
Sbjct: 67 SPLIALMKNQVDAIRGVSDHDGVAHVLNSSLSKTDVQQVK----DDIENG--ITKLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE ++ LK+ ++ +A+DEAHCIS WGHDFRP YR L + + + D+PI
Sbjct: 121 PESLTKEEYVDFLKQQK----ISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIGSDIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ LTATA PKVQ+D++++L + + ++SFNRPNLFYEVR K DA D+ +K N
Sbjct: 177 IGLTATATPKVQEDILKNLQITDATTFQASFNRPNLFYEVRPKTANVDA--DITRFIKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R +EL+ L GI YHAGL+ K R D ++ VVVAT+
Sbjct: 235 EGKSGIVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMS 353
>gi|260591259|ref|ZP_05856717.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
gi|260537124|gb|EEX19741.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
Length = 727
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 220/349 (63%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFEKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ K+ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDKVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTAT
Sbjct: 125 KEENMAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRYAIDTIGAAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRAKRSDDDTSKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGKEGICIVFYSKNDLKKLE 349
>gi|160890574|ref|ZP_02071577.1| hypothetical protein BACUNI_03017 [Bacteroides uniformis ATCC 8492]
gi|317479884|ref|ZP_07939001.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|423304003|ref|ZP_17282002.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|423307273|ref|ZP_17285263.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
gi|156859573|gb|EDO53004.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis ATCC 8492]
gi|316903958|gb|EFV25795.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|392685931|gb|EIY79239.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|392690525|gb|EIY83788.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
Length = 727
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LIDQLKKYFGFDTFKGNQEAIIENLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVRSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|271502372|ref|YP_003335398.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
gi|270345927|gb|ACZ78692.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
Length = 614
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 230/349 (65%), Gaps = 14/349 (4%)
Query: 17 NKPLHEKEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
N + KE L +++LR FG+ QFR Q D I A ++GRDC +MPTGGGKS+CYQIPAL
Sbjct: 8 NADVLSKEMLAMQVLRETFGYQQFRPGQQDIINAAINGRDCLVIMPTGGGKSLCYQIPAL 67
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
G+ LVVSPLI+LM++QV L+ G+A L+STQ+ + + ++ G+ L+LLY
Sbjct: 68 VLDGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFNACRRGE--LKLLY 125
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
+ PE +T GF+ +L ++ +L+AIDEAHCIS WGHDFRP YR L ++ P +P
Sbjct: 126 IAPERLSTDGFLDQLVHWNT----SLIAIDEAHCISQWGHDFRPEYRALGQIKQQCPTLP 181
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVL 253
I+ALTATA ++D+ L L++PLV SSF+RPN+ Y + ++K L L +
Sbjct: 182 IVALTATADDTTRQDIARLLDLRDPLVNVSSFDRPNIRYTLVEKFKPL-----DQLWLFI 236
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
IVYC R ++L A L G+S AYHAGL++ RS V + ++ QVVV
Sbjct: 237 HGQRGKSGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVV 296
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
ATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y
Sbjct: 297 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFY 345
>gi|265751367|ref|ZP_06087430.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|345514773|ref|ZP_08794279.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|423228784|ref|ZP_17215190.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423247595|ref|ZP_17228644.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|229437610|gb|EEO47687.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|263238263|gb|EEZ23713.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|392631925|gb|EIY25892.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392635523|gb|EIY29422.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
Length = 605
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 227/359 (63%), Gaps = 13/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTESVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK +++SQ
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSKFATESSQ 347
>gi|90419404|ref|ZP_01227314.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
gi|90336341|gb|EAS50082.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
Length = 632
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 221/346 (63%), Gaps = 12/346 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FGHA FR +Q + V++G D L PTG GKS+CYQIP+L +PG+ +VVSPL
Sbjct: 37 EMLRTVFGHAAFRGQQEAVVDQVVAGGDAVVLFPTGAGKSVCYQIPSLCRPGVGIVVSPL 96
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM +QV GL++ G+ L+S+ + + + + DL +G+ L LLYVTPE + GF
Sbjct: 97 IALMHDQVEGLRQAGVNAASLNSSMSDEERDTVRADLLAGR--LDLLYVTPERIVSEGFR 154
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L ++ + L AIDEAHC+S+WGHDFRP YR L +L + P VP +ALTATA P
Sbjct: 155 RTLSRVR----IALFAIDEAHCVSAWGHDFRPEYRLLETLADDFPSVPRIALTATADPTT 210
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++E L L + V +SF+RPN+ Y + +D + L S L+ + IVYCL
Sbjct: 211 RADIIERLRLTDAPVYMTSFDRPNIRYAIVERD---NPKKQLLSFLERHEGASGIVYCLS 267
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E +A+L+ GI YHAGL+ R++ +++ +VATVAFGMGID+ DV
Sbjct: 268 RRKVEETAAWLNTQGIRALPYHAGLDASVRAANQAAFLNEENLCLVATVAFGMGIDKPDV 327
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
R V H ++P S+EA+YQE+GRAGRD PS + + YGM D RRRM
Sbjct: 328 RFVAHLDLPSSVEAYYQETGRAGRDGQPSDAWMAYGMQDVVQRRRM 373
>gi|91204323|emb|CAJ71976.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 772
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 160/394 (40%), Positives = 243/394 (61%), Gaps = 14/394 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ + L+ +FG+++F Q D I+ VL +D F LMPTGGGKS+CYQ+PAL GI +
Sbjct: 56 KDRIYSALQKYFGYSKFYPLQEDIIRWVLEQKDLFVLMPTGGGKSLCYQLPALLFDGITV 115
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM++QV GL E GI+ F++S+ + DL GK +++LY+ PE A
Sbjct: 116 VISPLIALMKDQVDGLTENGISATFINSSVHAREVAARKRDLLEGK--IKILYIAPERLA 173
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L+++ ++L AIDE+HCIS WGHDFRP YR+L LR P P +ALTAT
Sbjct: 174 MREFLQFLQELK----VSLFAIDESHCISEWGHDFRPEYRQLKMLREKFPKTPFMALTAT 229
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P VQKD++ L L + V +SFNR NLFY++ KD + Y + VLK I
Sbjct: 230 ATPSVQKDIVTQLKLTDYKVFNASFNRKNLFYQIIPKD---NPYHQILCVLKERKKESGI 286
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R T + L+ L G YHAGL+ + R+ + +I +++VAT+AFGMGI
Sbjct: 287 IYCQGRKTVESLAGSLQGEGYRALPYHAGLSAEMRTENQERFIREDIEIIVATIAFGMGI 346
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+++PKS+E +YQE+GRAGRD L S +L + D+ ++E+ + + + +N
Sbjct: 347 DKPNVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKIKIEYFIHQKEDENE 406
Query: 383 QSFSTRERSS-----KKSISDFSQVLDVAGKRFS 411
+ + ++ + + ++ +LD G++F+
Sbjct: 407 KQAAYQQLKALVSYCEGNVCRRKILLDYFGEKFT 440
>gi|256820777|ref|YP_003142056.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429746398|ref|ZP_19279750.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429756068|ref|ZP_19288682.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256582360|gb|ACU93495.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429166284|gb|EKY08277.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429172170|gb|EKY13749.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 729
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 K 376
K
Sbjct: 355 K 355
>gi|153809072|ref|ZP_01961740.1| hypothetical protein BACCAC_03380 [Bacteroides caccae ATCC 43185]
gi|423216745|ref|ZP_17203241.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
gi|149128405|gb|EDM19624.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae ATCC 43185]
gi|392629275|gb|EIY23282.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
Length = 726
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ FG +F+ Q IQ +L GRD F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LINELKKCFGFNKFKGNQEAIIQNLLDGRDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +EL+ L A GI+ YHAG++ R+ DD++ + +V+VAT+AFGMG
Sbjct: 238 IVYCLSRKRVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVEVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|212693848|ref|ZP_03301976.1| hypothetical protein BACDOR_03370 [Bacteroides dorei DSM 17855]
gi|237708472|ref|ZP_04538953.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
gi|212663600|gb|EEB24174.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229457401|gb|EEO63122.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
Length = 605
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 227/359 (63%), Gaps = 13/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLVLKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK +++SQ
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSKFATESSQ 347
>gi|149371063|ref|ZP_01890658.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149355849|gb|EDM44407.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 697
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 223/343 (65%), Gaps = 13/343 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
++V LL+ HFG+ FR Q + I VL +D +MPTGGGKS+C+Q+PALA G +V+
Sbjct: 8 SIVSLLKTHFGYDSFRPNQEEIINTVLEAKDVLAIMPTGGGKSLCFQLPALALNGTAIVI 67
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L GI+ + +STQ + + I E L + + L+L+YV PE +
Sbjct: 68 SPLIALMKDQVDALNANGISAAYYNSTQPQEEQAAILEKLITRQ--LKLIYVAPE--SIW 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L KI +NL+A+DEAHCISSWGHDFRP+Y +LS L+ P PI+ALTATA
Sbjct: 124 SLTNHLSKIE----INLIAVDEAHCISSWGHDFRPAYTQLSRLKQEFPGTPIIALTATAD 179
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIV 263
Q D+++ L + N SSF+RPN++ +VR ++ ++ Y L S G I+
Sbjct: 180 RATQDDILDQLKISNAKRFVSSFDRPNIYLDVRPGQNRINHIYKFLSS----RGLQSGII 235
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + + ++A L G AAYHAGL+ + RS + +D+I+ R ++VAT+AFGMGID
Sbjct: 236 YCLSRKSTESITAKLKTKGYDAAAYHAGLSAEDRSQIQEDFINDRTPIIVATIAFGMGID 295
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H+N+PK++E +YQE GR GRD L +++L++Y D
Sbjct: 296 KSNVRWVIHYNMPKNIEGYYQEIGRGGRDGLKARALMFYSYAD 338
>gi|393779596|ref|ZP_10367834.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609916|gb|EIW92711.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 727
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 228/361 (63%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 K 376
K
Sbjct: 353 K 353
>gi|365987708|ref|XP_003670685.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
gi|343769456|emb|CCD25442.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
Length = 1110
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 229/362 (63%), Gaps = 10/362 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PG 79
E + LR F FR QL+AI + L G+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 460 EEVYYRLRHTFKLPGFRPNQLEAINSTLIGKDVFVLMPTGGGKSLCYQLPAIVKSGKTKG 519
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L + I +SS T Q + + + GK L L+Y++PE
Sbjct: 520 TSIVISPLISLMQDQVEHLLDLNIKASMISSKGTTQQRKQTFSLFSQGK--LDLIYISPE 577
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ A+ + +KK++ G L + +DEAHC+SSWGHDFRP Y++L ++ P +P++
Sbjct: 578 MIASSKQCKRVIKKLYQEGNLARIIVDEAHCVSSWGHDFRPDYKELYFFKSEYPKIPMMV 637
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA V++D++ +L L+NP+ LK SFNR NLFYEV KD D+ ++ +K +
Sbjct: 638 LTATANEHVRQDIVTNLRLRNPVFLKQSFNRTNLFYEVLRKD--KDSIDEMIDAIKYHFT 695
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ I+YC + +C++++ L I C YHAG++ R + DW ++ QV+ ATVA
Sbjct: 696 EQSGIIYCHSKNSCEKVALQLQNNQIRCGYYHAGMDPDERMMIQRDWQRNKLQVICATVA 755
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR + HF +P+++E +YQE+GRAGRD PS + YY M D R ++ ++ K+
Sbjct: 756 FGMGIDKSDVRFIYHFTVPRTLEGYYQETGRAGRDGKPSYCIGYYSMKDVRAIQKMIQKD 815
Query: 378 QS 379
S
Sbjct: 816 SS 817
>gi|154324014|ref|XP_001561321.1| hypothetical protein BC1G_00406 [Botryotinia fuckeliana B05.10]
Length = 1677
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 156/362 (43%), Positives = 219/362 (60%), Gaps = 11/362 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K L+ F FR QL+AI A L+GRD F LMPTGGGKS+CYQ+PA+ + G+ +V
Sbjct: 802 KALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSGKTKGVTIV 861
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL- 140
VSPL+ALM +QV L + I +S T + + +++ L+ KP + LLYVTPE+
Sbjct: 862 VSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVELLYVTPEMI 921
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ SKL ++++ L + IDEAHC+S WGHDFRP Y+ L LR P VP +ALT
Sbjct: 922 NKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYPGVPFIALT 981
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA----N 256
ATA +V+KDV+ +L +QN LK SFNRPN++YEVR K A + K
Sbjct: 982 ATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEITKMLSVDY 1041
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R C+E++ L GI +HA + + + W QVVVAT+
Sbjct: 1042 KNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHKWQIGSIQVVVATI 1101
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+++VR V H+ +PK++E +YQE+GRAGRD P+ LYYG D + + ++ K
Sbjct: 1102 AFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAGRDGKPAACFLYYGFQDSQIYKKMIEK 1161
Query: 377 NQ 378
+
Sbjct: 1162 GE 1163
>gi|406866234|gb|EKD19274.1| QDE3-like protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1765
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 245/405 (60%), Gaps = 23/405 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVV 84
+LR F FR Q+DAI A LSG+D F LMPTGGGKS+CYQ+PA+ G + LV+
Sbjct: 890 VLRERFKLKGFRRHQIDAINATLSGQDAFVLMPTGGGKSLCYQLPAVVNSGKTRGVTLVI 949
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL-T 141
SPL++LM +QV L K I L+S +VK+ I+ L P ++LLY+TPE+
Sbjct: 950 SPLLSLMNDQVQHLLVKKIQAATLNSDSPSEVKSDIWSALREENPEQYIQLLYITPEMIN 1009
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P ++ L +++ +G L + IDEAHC+S WGHDFRP Y L LR+ P VP++ALTA
Sbjct: 1010 KSPPMIAALTRLYKKGKLARIVIDEAHCVSQWGHDFRPDYVALGRLRSDFPRVPLMALTA 1069
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY---KDLLDDAYADLCSVLKAN-G 257
TA V+ DVM +L ++ V SFNRPNL+YEVR K +L ++ +++
Sbjct: 1070 TATSNVKDDVMTNLGMKGCPVFTQSFNRPNLYYEVRLKRGKGVLAKMVTEIVELVRDTYK 1129
Query: 258 DTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y L + C++L+ L+ + YHAG+N + +++VL DW + + QVVVAT+
Sbjct: 1130 NQTGIIYALSQKGCEDLAQKLANEHNLRAYHYHAGMNREDKATVLQDWQTGKIQVVVATI 1189
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKS+E +YQE+GRAGRD S LY+G D ++ +
Sbjct: 1190 AFGMGIDKPDVRFVIHSSVPKSLEGYYQETGRAGRDGKRSGCYLYFGYQDTSTLKKFIED 1249
Query: 377 NQSKNSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSR 412
++ Q R+R+ K++ + SQVL G++FSR
Sbjct: 1250 SEGNEDQ--KNRQRNMLKNMVGYCENRTDCRRSQVLRYFGEKFSR 1292
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 230/343 (67%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTESFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++A
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQAQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|295673364|ref|XP_002797228.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282600|gb|EEH38166.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1550
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 236/407 (57%), Gaps = 24/407 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 691 FGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 750
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 751 LMEDQVAHLKELHIQAFLLNGDVSKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 808
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 809 ALLGALSHLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 868
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 869 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 928
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 929 YCLSRQSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 988
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H IPKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 989 DKADVRFVIHHTIPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEGSFE 1048
Query: 383 QSFSTRERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
Q R+R + + F Q+L ++F R NR D
Sbjct: 1049 Q--KKRQRQMLRHVVQFCENESDCRRVQILAYFNEKFERENCNRSCD 1093
>gi|343429696|emb|CBQ73268.1| related to SGS1-DNA helicase [Sporisorium reilianum SRZ2]
Length = 1258
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 172/367 (46%), Positives = 227/367 (61%), Gaps = 9/367 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGI 80
+V LR +F +FR QL+AI L GRD F LMPTGGGKS+CYQ+PA AK G+
Sbjct: 338 VVYALRRYFKLRRFRHNQLEAINGTLMGRDVFVLMPTGGGKSLCYQLPACIDTENAK-GL 396
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLI+L+ +QV L K IA ++ K + + K SLRLLY+TPE
Sbjct: 397 TIVISPLISLINDQVRHLTLKEIAAASITGDTNPADKRLVMDLARETKSSLRLLYLTPEF 456
Query: 141 TAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T P L +++SR L +DEAHC+S WGHDFRP Y +L +LR P VPI+AL
Sbjct: 457 IRTSPQAQLLLDELYSRKQLARFVVDEAHCVSQWGHDFRPHYTELGALRKQYPTVPIMAL 516
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGD 258
TATA +V KDV L ++N L L SSFNRPNL Y+VR K A D+ S +L ++ D
Sbjct: 517 TATANARVVKDVEACLQMKNVLQLSSSFNRPNLEYQVRSKPR-SKAVDDIASFILASHKD 575
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYCL R TC+ ++A L GIS YHA L R+ V D W S+ +V+VAT+AF
Sbjct: 576 ECGIVYCLSRETCETVAADLIKHGISAHHYHARLQKDDRAMVQDKWQSNEFKVIVATIAF 635
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQE+GRAGRD S +LYY D ++E ++ +
Sbjct: 636 GMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKSSACILYYSYGDVLKIEKMVRGEE 695
Query: 379 SKNSQSF 385
K+ +
Sbjct: 696 DKSQDAI 702
>gi|108936937|dbj|BAE96002.1| RecQ-like helicase 2 [Oryza sativa Japonica Group]
Length = 768
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 159/328 (48%), Positives = 216/328 (65%), Gaps = 6/328 (1%)
Query: 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106
I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI
Sbjct: 100 INAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAY 159
Query: 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAID 165
L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AID
Sbjct: 160 MLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAID 219
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225
EAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S
Sbjct: 220 EAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVS 279
Query: 226 SFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281
+ NRPNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS
Sbjct: 280 TINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSER 338
Query: 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341
GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME
Sbjct: 339 GILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMET 398
Query: 342 FYQESGRAGRDQLPSKSLLYYGMDDRRR 369
+YQESGRAGRD LPS+ +LYY D R
Sbjct: 399 YYQESGRAGRDGLPSECILYYRPGDVPR 426
>gi|223940604|ref|ZP_03632448.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
gi|223890722|gb|EEF57239.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
Length = 728
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 216/341 (63%), Gaps = 9/341 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG + FR Q + I L+G+D F L+PTGGGKS+C+Q+PAL +PG+ +V+S
Sbjct: 12 LLPTLKQYFGFSSFRPLQEEIILDTLAGKDVFALLPTGGGKSLCFQLPALVRPGLTVVIS 71
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L G FL+S+ T L G+ RLLYV PE G
Sbjct: 72 PLIALMKDQVDALTASGAPATFLNSSLEAGESTPRLRGLHKGE--FRLLYVAPERLMLSG 129
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L++ + +NL AIDEAHC+S WGHDFRP YR +S LR P+VP +ALTATA
Sbjct: 130 FLEDLRRWN----VNLFAIDEAHCVSEWGHDFRPEYRAISKLRELFPEVPFMALTATATE 185
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++D++ +L L+ P + +SFNRPNL Y V K AY S ++A IVYC
Sbjct: 186 RVREDIIRALSLREPQIFVASFNRPNLTYRVHAKS---GAYEQTLSFIRARPRESGIVYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R T + ++ L+ G+S YHAGL + RS + ++ +VV AT+AFGMGI++
Sbjct: 243 HSRKTAESVAQKLNEDGVSARPYHAGLPGEERSRNQELFLRDEVRVVCATIAFGMGINKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+++PK++E +YQE+GRAGRD LPS+ LL + D
Sbjct: 303 NVRFVIHYDLPKNVEGYYQETGRAGRDGLPSECLLLFSPGD 343
>gi|374853612|dbj|BAL56515.1| ATP-dependent DNA helicase RecQ [uncultured Bacteroidetes
bacterium]
Length = 717
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 226/360 (62%), Gaps = 6/360 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L +FG+ FR Q + I+ +L G++ +MPTG GKS+CYQ+PAL PG LVVS
Sbjct: 4 LKEALERYFGYKSFRQPQEEIIRTLLEGKNVMVIMPTGAGKSLCYQLPALLLPGTALVVS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM+NQV ++ I FL+S+ + + ++ GK ++LLYV PE +
Sbjct: 64 PLIALMKNQVDQMQAYDIPAAFLNSSLSRREYEEVKRACLQGK--VKLLYVAPETLLSES 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L ++ ++ VA+DEAHCIS WGHDFRP YR++ LP +PI+ALTATA P
Sbjct: 122 FAEVLAQLQ----ISFVAVDEAHCISEWGHDFRPEYRRIRHALRDLPPMPIIALTATATP 177
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ+D++E+L + + +V ++SFNRPNL+Y++ K ++ +++ IVYC
Sbjct: 178 RVQRDILENLEILDAVVFRTSFNRPNLYYQITPKRSHQATLKEIVQYIRSRPGQAGIVYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++++ L A GI YHAG++ R+ D +++ QV+VAT+AFGMGID+
Sbjct: 238 HSRRRVEDVANILQANGIKALPYHAGMDAATRTRNQDAFLNEEIQVIVATIAFGMGIDKP 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V HF++PKS+E +YQE+GRAGRD LP+ +LYY +D +++ L + ++
Sbjct: 298 DVRFVIHFDVPKSIENYYQETGRAGRDGLPADCILYYDYNDILKLDRFLKDKPASEREAI 357
>gi|1931649|gb|AAB65484.1| DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]
Length = 665
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 249/427 (58%), Gaps = 19/427 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 120 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 179
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 180 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 239
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 240 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 299
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 300 QALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENHFDECGIIYCLSRMDC 357
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 358 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 417
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ S + R
Sbjct: 418 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 476
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ RY + + FL LV HL ++ + C
Sbjct: 477 ----VASSGRLLETNTENLLRMV--RYCE--NEVECRRFLQLV------HLGEKFDSTNC 522
Query: 452 KNSCDAC 458
K +CD C
Sbjct: 523 KKTCDNC 529
>gi|240960494|ref|XP_002400557.1| DNA helicase, putative [Ixodes scapularis]
gi|215490700|gb|EEC00343.1| DNA helicase, putative [Ixodes scapularis]
Length = 981
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 164/369 (44%), Positives = 227/369 (61%), Gaps = 16/369 (4%)
Query: 25 ALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAKP--GI 80
AL + L FGH FR Q A++AV +D F MPTG GKS+CYQ+PA+ P +
Sbjct: 9 ALREALETVFGHTAFRSGLQEKAVEAVAQCAQDVFVSMPTGAGKSLCYQLPAVVTPDSSV 68
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM +Q+ L++ GI E ++ST + ++ DL S P RLLYVTPE
Sbjct: 69 TVVVSPLIALMSDQLQKLRDLGIDAETINSTMKKSERDRVRSDLLSMSPETRLLYVTPEQ 128
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT GF LK +H G L AIDEAHC+S WGHDFRP Y KL +R+ PDVP++ALT
Sbjct: 129 VATEGFQGILKALHRIGKLARFAIDEAHCVSEWGHDFRPDYLKLGRVRDMFPDVPVVALT 188
Query: 201 ATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANG- 257
ATA+ KV D++ L L+ P+ + K+S R NL+Y+V +K+ L++ + +L LKA G
Sbjct: 189 ATASAKVFDDILVQLRLRQPVAIFKTSSFRANLYYDVEFKEALEEPFENLKGFALKALGA 248
Query: 258 ----DTC-----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
+ C IVYC R C+E+S L++ G+ YH G+ R +W R
Sbjct: 249 DWDSEDCKRRGSGIVYCRTRDACEEVSLKLTSLGLLTKPYHGGMKPSEREENQAEWTEGR 308
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+ ATV+FGMG+DR VR V H+++P+S+ A+YQESGRAGRD PS +YY DR+
Sbjct: 309 LPVIAATVSFGMGVDRAMVRFVAHWSVPQSVPAYYQESGRAGRDGRPSYCRIYYSRRDRK 368
Query: 369 RMEFILSKN 377
+ F++ ++
Sbjct: 369 AITFLIQQD 377
>gi|347829887|emb|CCD45584.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1775
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 156/362 (43%), Positives = 219/362 (60%), Gaps = 11/362 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K L+ F FR QL+AI A L+GRD F LMPTGGGKS+CYQ+PA+ + G+ +V
Sbjct: 899 KALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSGKTKGVTIV 958
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL- 140
VSPL+ALM +QV L + I +S T + + +++ L+ KP + LLYVTPE+
Sbjct: 959 VSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVELLYVTPEMI 1018
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ SKL ++++ L + IDEAHC+S WGHDFRP Y+ L LR P VP +ALT
Sbjct: 1019 NKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYPGVPFIALT 1078
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA----N 256
ATA +V+KDV+ +L +QN LK SFNRPN++YEVR K A + K
Sbjct: 1079 ATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEITKMLSVDY 1138
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R C+E++ L GI +HA + + + W QVVVAT+
Sbjct: 1139 KNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHRWQIGSIQVVVATI 1198
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+++VR V H+ +PK++E +YQE+GRAGRD P+ LYYG D + + ++ K
Sbjct: 1199 AFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAGRDGKPAACFLYYGFQDSQIYKKMIEK 1258
Query: 377 NQ 378
+
Sbjct: 1259 GE 1260
>gi|381186153|ref|ZP_09893727.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379651827|gb|EIA10388.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 731
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 224/352 (63%), Gaps = 13/352 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I+++L ++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVIKSLLDRQNTFVIMPTGGGKSLCYQLPALTQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T T++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEITQVKKDITSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
++ LK + ++ VAIDEAHCIS WGHDFRP YR L + L D+PI+ LTATA
Sbjct: 127 EENVNFLKTVK----ISFVAIDEAHCISEWGHDFRPEYRNLKHIIKQLGDLPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMCDATTFKASFNRPNLYYEVRTK--TKNVESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVEAIAHVLQVNGISAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMS 352
>gi|261880042|ref|ZP_06006469.1| ATP-dependent helicase RecQ [Prevotella bergensis DSM 17361]
gi|270333282|gb|EFA44068.1| ATP-dependent helicase RecQ [Prevotella bergensis DSM 17361]
Length = 742
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 186/482 (38%), Positives = 264/482 (54%), Gaps = 56/482 (11%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +++ L L+ +FG F+ Q I++++ G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MMKEDNLTLRLKQYFGFDSFKGDQEAIIKSLMGGSDAFVLMPTGGGKSLCYQLPSLLMDG 60
Query: 80 IVLVVSPLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+V+SPLIALM+NQV GL E+ FL+S+ Q T++ ED+ SGK +LLYV
Sbjct: 61 TAIVISPLIALMKNQVDVVNGLTEESGVAHFLNSSLNKQAITQVEEDVHSGKT--KLLYV 118
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR-------KLSSLRN 189
PE P + + ++ AIDEAHCIS WGHDFRP YR K++S R
Sbjct: 119 APESLNKPDNLEFFQSFR----ISFYAIDEAHCISEWGHDFRPEYRNIRPTIDKIASSRG 174
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 249
PI+ALTATA KV+ D+ +SL + + KSSFNRPNL+YEVR K +DA + +
Sbjct: 175 E-KRAPIIALTATATDKVRSDIKKSLGIVDARDFKSSFNRPNLYYEVRQKASEEDADSQI 233
Query: 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
LK + I+YCL R +ELS L G A YHAGL+ + R+ DD++
Sbjct: 234 IRFLKQHEGKSGIIYCLSRKKVEELSKKLQINGYKAAPYHAGLDTEVRTQTQDDFLREDI 293
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
++VAT+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D ++
Sbjct: 294 DIIVATIAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSPKDLKK 353
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGW 429
+E F+ + ++K IS Q+L+ + R +
Sbjct: 354 LE------------KFTDNKGEAEKEIS--RQLLEETKAYAESSVCRRKF---------- 389
Query: 430 FLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQ-----KNHFSQI 484
+L Y+ K+ C+N CD CKHP + GE AVL+ K F Q
Sbjct: 390 ----LLHYFGEEYTKE----NCEN-CDNCKHPQKTEE-AGEALLAVLKAIKAVKEEFDQS 439
Query: 485 FI 486
+I
Sbjct: 440 YI 441
>gi|120434956|ref|YP_860642.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117577106|emb|CAL65575.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 732
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 224/355 (63%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q + I ++++G+D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRYFGFSQFKGLQEEVITSIVNGKDTFVVMPTGGGKSLCYQLPALISDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +VK ++ +D+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSISSEHGVAHVLNSSLNKTEVK-QVKDDISNG--ICKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
++ LK + +A+DEAHCIS WGHDFRP YR L ++ + D +P++ LT
Sbjct: 125 TKEDYVDFLK----NQTIAFLAVDEAHCISEWGHDFRPEYRNLRNILKRIGDNIPVIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YEVR K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGITDAKTFKASFNRPNLYYEVRPK--TKNIEADITRFVKQNDGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K RS D ++ VVVAT+AFGM
Sbjct: 239 GIIYCLSRKKVEELAQTLQVNGIKAVPYHAGLDAKKRSKHQDMFLMEDIDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMS 353
>gi|404449892|ref|ZP_11014879.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
gi|403764371|gb|EJZ25272.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
Length = 726
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 218/346 (63%), Gaps = 14/346 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +QFR Q + VL G + F +MPTG GKS+CYQ+PA+ + G +V+SPLIA
Sbjct: 9 LKRIFGFSQFRGNQEPIVDNVLRGNNTFVIMPTGAGKSLCYQLPAVIQDGTAIVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG--F 146
LM+NQV L GI FL+ST K+ +++ SGK +LLYV PE LT F
Sbjct: 69 LMKNQVDQLNAFGINAHFLNSTLNKTETNKVKKEVLSGKT--KLLYVAPESLTKEENVLF 126
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205
+ K L+ VAIDEAHCIS WGHDFRP YRK+ ++ + ++PI+ALTATA P
Sbjct: 127 LKDAK-------LSFVAIDEAHCISEWGHDFRPEYRKIKTIIAQIGSNLPIVALTATATP 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K+ I+YC
Sbjct: 180 KVQQDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-VKNETKKQIIKYIKSQKGKSGIIYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GI A YHAGL R DD+++ V+VAT+AFGMGID+
Sbjct: 239 LSRKKVEEIANLLKVNGIKAAPYHAGLEQNVRVKNQDDFLNEEVDVIVATIAFGMGIDKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H+++PKS+E +YQE+GRAGRD L L++Y DD ++E
Sbjct: 299 DVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDDIVKLE 344
>gi|399026913|ref|ZP_10728551.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398075677|gb|EJL66783.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 731
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 224/352 (63%), Gaps = 13/352 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L+ ++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILNKKNTFVIMPTGGGKSLCYQLPALIQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDITSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLGSVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVETIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMS 352
>gi|11121449|emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
Length = 1182
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 249/427 (58%), Gaps = 19/427 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 443 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 502
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 503 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 562
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 563 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 622
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 623 QALGLVNCVVFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDC 680
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 681 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 740
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ S + R
Sbjct: 741 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 799
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ RY + + FL LV HL ++ + C
Sbjct: 800 ----VASSGRLLETNTENLLRMV--RYCENE--VECRRFLQLV------HLGEKFDSTNC 845
Query: 452 KNSCDAC 458
K +CD C
Sbjct: 846 KKTCDNC 852
>gi|30681987|ref|NP_172562.2| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
gi|75329797|sp|Q8L840.1|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName:
Full=RecQ-like protein 4A; Short=AtRecQ4A;
Short=AtRecQl4A; AltName: Full=SGS1-like protein;
Short=AtSGS1
gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana]
gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
Length = 1188
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 249/427 (58%), Gaps = 19/427 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 449 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 508
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 509 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 568
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 569 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 628
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 629 QALGLVNCVVFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDC 686
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 687 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 746
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ S + R
Sbjct: 747 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 805
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ RY + + FL LV HL ++ + C
Sbjct: 806 ----VASSGRLLETNTENLLRMV--RYCENE--VECRRFLQLV------HLGEKFDSTNC 851
Query: 452 KNSCDAC 458
K +CD C
Sbjct: 852 KKTCDNC 858
>gi|115486841|ref|NP_001068564.1| Os11g0708600 [Oryza sativa Japonica Group]
gi|113645786|dbj|BAF28927.1| Os11g0708600, partial [Oryza sativa Japonica Group]
Length = 685
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/328 (48%), Positives = 216/328 (65%), Gaps = 6/328 (1%)
Query: 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106
I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI
Sbjct: 17 INAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAY 76
Query: 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAID 165
L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AID
Sbjct: 77 MLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAID 136
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225
EAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S
Sbjct: 137 EAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVS 196
Query: 226 SFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281
+ NRPNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS
Sbjct: 197 TINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSER 255
Query: 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341
GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME
Sbjct: 256 GILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMET 315
Query: 342 FYQESGRAGRDQLPSKSLLYYGMDDRRR 369
+YQESGRAGRD LPS+ +LYY D R
Sbjct: 316 YYQESGRAGRDGLPSECILYYRPGDVPR 343
>gi|441500281|ref|ZP_20982448.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441435974|gb|ELR69351.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 723
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 231/358 (64%), Gaps = 11/358 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ HFG+ FR +Q + I +L GRD LMPTGGGKS+CYQ+PAL G+ +V+SPLI
Sbjct: 12 ILKKHFGYDSFRHQQKEIIHHILEGRDALVLMPTGGGKSLCYQVPALIFEGVTIVISPLI 71
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
ALM++QV L+ GI+ +L+S+ + Q + ++ L + L+LLY+ PE ++ GF
Sbjct: 72 ALMKDQVDALRLNGISAAYLNSSLSQQEQAEVMRLLRDNR--LKLLYLAPERLVSGDKGF 129
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ LK + L+++AIDEAHCIS WGHDFRP Y +L++L++ P+VP++ALTATA
Sbjct: 130 INFLK---DQAKLSMIAIDEAHCISQWGHDFRPEYTQLATLKSVFPEVPVVALTATADKL 186
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D+++ L L NP SSFNR N++Y V K +Y L L + D I+Y L
Sbjct: 187 TQDDILQQLKLHNPKKFVSSFNRENIYYFVSPKR---RSYDQLLQFLNKHKDDTGIIYTL 243
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + + L+ L A G YHAGL+ R D +I + +++ AT+AFGMGID+ +
Sbjct: 244 SRASAESLAEQLIADGYDARPYHAGLDRDVRDKHQDLFIKDQIKIITATIAFGMGIDKSN 303
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQ 383
VR V H ++PK++E +YQE+GRAGRD L S++LL+Y D ++++ F+ + ++ S+
Sbjct: 304 VRFVVHMDLPKNIEGYYQETGRAGRDGLKSEALLFYSYADVKKLKSFVEVEGNTQQSE 361
>gi|357043893|ref|ZP_09105579.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
gi|355367947|gb|EHG15373.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
Length = 727
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 235/394 (59%), Gaps = 13/394 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+GRD F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQESIIRNLLAGRDTFVLMPTGGGKSLCYQLPSLIMDGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDNVRADILSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIETIGLAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRPKKNDDDTNKQIIKFIKQHAGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEEIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSK---NQ 378
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E F+ K Q
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICVVFYSKNDLKKLEKFMEGKPVAEQ 360
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSR 412
Q E ++ S+ +L G+ +++
Sbjct: 361 DIGRQLLQETEAYAESSVCRRKMLLHYFGEEYAK 394
>gi|194332913|ref|YP_002014773.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
gi|194310731|gb|ACF45126.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
Length = 617
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 223/361 (61%), Gaps = 9/361 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
T P +++ L FG FR Q + +QA+LSGRD F +MPTGGGKS+CYQ+P
Sbjct: 2 THDTLPASPSASVLNTLHKVFGFNAFRPNQGEVVQAILSGRDAFAVMPTGGGKSLCYQLP 61
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G +V+SPLIALM++QV G + GI +L+S+ + ++ + +L S + L L
Sbjct: 62 AVVMEGTCVVISPLIALMKDQVDGARVNGIRAAYLNSSLSPDEQSLVMSELTSNR--LDL 119
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE + F + LK++ +++ IDEAHCIS WGHDFRP Y LS+L PD
Sbjct: 120 LYVAPERFSLEHFQTVLKEVK----ISMAVIDEAHCISEWGHDFRPDYLSLSALVELFPD 175
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP+ A TATA KVQ D++ L L++P V+++SF+RPNL Y+VR+K D+ L +L
Sbjct: 176 VPVAAFTATATHKVQADILRKLGLRDPFVVRASFDRPNLTYDVRFK---DNVSEQLVGLL 232
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K++ I+Y R + +E +A L A G YHAGL D+ R + +I V+V
Sbjct: 233 KSSPGKAGIIYRTSRKSVNETTAMLQAKGFRALPYHAGLGDEERKKNQETFIRDEADVIV 292
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATVAFGMGID+ ++R V H ++PKS+E +YQE+GRAGRD P+ L + D ++ F
Sbjct: 293 ATVAFGMGIDKSNIRFVIHADLPKSIENYYQETGRAGRDGEPAHCTLLFSQGDIPKVRFF 352
Query: 374 L 374
+
Sbjct: 353 I 353
>gi|390943602|ref|YP_006407363.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390417030|gb|AFL84608.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 725
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/338 (44%), Positives = 217/338 (64%), Gaps = 8/338 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +QFR Q + +L G + F +MPTG GKS+CYQ+PA+ K G +V+SPLIA
Sbjct: 9 LKEIFGFSQFRGNQEAIVDNILGGSNTFVIMPTGAGKSLCYQLPAVIKNGTAVVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI FL+ST K+ +++ +G + +LLYV PE +
Sbjct: 69 LMKNQVDQLNAFGINAYFLNSTLNKSETNKVKKEVLAG--NTKLLYVAPESLTKEENVKF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQ 208
LK+ + ++ VAIDEAHCIS WGHDFRP YR++ S+ + + +PI+ALTATA PKVQ
Sbjct: 127 LKEAN----ISFVAIDEAHCISEWGHDFRPEYRRIKSIIAQIGEKLPIIALTATATPKVQ 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K I+YCL R
Sbjct: 183 QDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-IKNETKKQIIKYIKGQKGKSGIIYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E+++ L GI+ A YHAGL+ R DD+++ V+VAT+AFGMGID+ DVR
Sbjct: 242 KKVEEIASLLKVNGINAAPYHAGLDQNVRIKNQDDFLNEELDVIVATIAFGMGIDKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V H+++PKS+E +YQE+GRAGRD L L++Y DD
Sbjct: 302 YVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDD 339
>gi|373461301|ref|ZP_09553043.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
gi|371952855|gb|EHO70688.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
Length = 725
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 216/349 (61%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q IQ ++SG D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTRQLKHYFGFDKFKGDQEAIIQNLMSGHDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV GL E+ +L+S+ ++ +D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGLSEETGVAHYLNSSLNKAAVQQVMDDIRSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YR + N + D P++ALTAT
Sbjct: 125 KEESIDFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNRPNL+YEVR K D+ + ++ + I
Sbjct: 181 ATDKVRSDIKKSLAIIDAKEFKSSFNRPNLYYEVRQKS--DEVDKQIIKFIRQHEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELSEVLKANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYAQKDLKKLE 347
>gi|194901954|ref|XP_001980516.1| GG17198 [Drosophila erecta]
gi|190652219|gb|EDV49474.1| GG17198 [Drosophila erecta]
Length = 1457
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/359 (43%), Positives = 220/359 (61%), Gaps = 9/359 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 695 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 754
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 755 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 814
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 815 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 874
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKAN-GDTC 260
P+V+ D++ L L+N SSFNR NL Y V K LDD + +++
Sbjct: 875 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGASTLDD----ISRYIRSKPAHFS 930
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE S + G+ AYHAGL D R DW++ + +V+ AT+AFGM
Sbjct: 931 GIIYCLSRKECDETSKRMCKDGVRAVAYHAGLTDTEREGRQKDWLTGKIRVICATIAFGM 990
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ +++
Sbjct: 991 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYADMLRIKKMMDSDKA 1049
>gi|167765436|ref|ZP_02437549.1| hypothetical protein BACSTE_03826 [Bacteroides stercoris ATCC
43183]
gi|167697064|gb|EDS13643.1| ATP-dependent DNA helicase RecQ [Bacteroides stercoris ATCC 43183]
Length = 727
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|340348782|ref|ZP_08671813.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
gi|339613206|gb|EGQ17991.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
Length = 727
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 218/349 (62%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDNVKADIQNGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEESIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAIDQIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNRQIIKFIKQNLGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFYSKNDLKKLE 349
>gi|270295711|ref|ZP_06201911.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
gi|270273115|gb|EFA18977.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
Length = 727
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 222/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIENLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVRSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|422007125|ref|ZP_16354111.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
gi|414097015|gb|EKT58670.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
Length = 608
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 229/370 (61%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGAILDKRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ L+S+QT Q + +I E G+ ++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGE--IKLLYVAPERLLTDYFLSQLAGW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L PLV SSF+RPN+ Y + +YK L L +K IVYC R+
Sbjct: 195 LLELHEPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL R V D ++ QVVVATVAFGMGI++ +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLEAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|329957341|ref|ZP_08297861.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
gi|328523054|gb|EGF50157.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
Length = 727
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|393785533|ref|ZP_10373683.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392662288|gb|EIY55852.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 726
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L GRD F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKQYFGFDKFKGNQEAIIQNLLDGRDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKADILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + + KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQIFKSSFNRPNLYYEVRPKTANIDR--DIIKFIRNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGRCITFYTNKDLQKLE 347
>gi|410624460|ref|ZP_11335257.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410155967|dbj|GAC30631.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 627
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/346 (43%), Positives = 223/346 (64%), Gaps = 13/346 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG+A+FR Q++ I +L+G+D L+PTGGGKS+CYQ+PALA GI +VVSPL
Sbjct: 37 KILKDTFGYAEFRAGQMEVIDKILNGQDALILLPTGGGKSLCYQVPALALEGITIVVSPL 96
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L +G+ +L+S+Q + +I E L G+ L LLYV PE F+
Sbjct: 97 ISLMQDQVQQLTAQGVKAAYLNSSQDAEESQQITEQLFRGE--LDLLYVAPERLLKSYFL 154
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L+++ ++L+A+DEAHC+S WGHDFR YR+L L++ +VP +ALTATA
Sbjct: 155 NSLQRVK----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSQFQNVPFIALTATADHAT 210
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
Q D+ L L+NP V K F+RPN+ Y + +YK + + + +K IVYC
Sbjct: 211 QVDIQHQLQLENPFVFKGGFDRPNIRYNLLAKYK-----GFDQVVAFVKQQDGAAGIVYC 265
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D+L+ L + GI C AYHAG + R V ++ QVV+ATVAFGMGI++
Sbjct: 266 NSRAKVDDLTQRLQSAGIKCDAYHAGRDTATREFVQTQFLKDDLQVVIATVAFGMGINKS 325
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+VR V H ++P+S+E++YQE+GRAGRD +P+++LL + D R++
Sbjct: 326 NVRFVVHHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIK 371
>gi|379729697|ref|YP_005321893.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
gi|378575308|gb|AFC24309.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
Length = 737
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/358 (44%), Positives = 228/358 (63%), Gaps = 17/358 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG QF+ +Q + IQ++LSG+D F +MPTGGGKS+CYQ+PAL G +VV
Sbjct: 7 SLTTALKKYFGFEQFKGQQEEIIQSILSGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVV 66
Query: 85 SPLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ E FL+S+ + ++ +D+ SG + +LLY+ PE L
Sbjct: 67 SPLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSG--ATKLLYIAPETL 124
Query: 141 TA--TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPIL 197
T T F+S++K ++ VA+DEAHCIS WGHDFRP YR++ S+ N ++PI+
Sbjct: 125 TKEDTLRFLSQIK-------VSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPII 177
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKV+ D++++L L+ P SFNR NLFYEV+ K +D + +K
Sbjct: 178 ALTATATPKVRMDIVKTLRLEEPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQFIKDKA 237
Query: 258 -DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y R T +E++ LS I A YHAGL K RS D ++ + V+VAT+
Sbjct: 238 PNESGIIYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D R+E L
Sbjct: 298 AFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFL 355
>gi|428210292|ref|YP_007094645.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
gi|428012213|gb|AFY90776.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
Length = 708
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 243/397 (61%), Gaps = 18/397 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L L+ +FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL +PG+ +V
Sbjct: 5 QSLEAALKHYFGYDSFRPGQKQIVEQALQNRDQLIVMPTGGGKSLCFQLPALLQPGLTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L++ GI FL+S+ + QV+++ + + SGK +LLYV PE
Sbjct: 65 VSPLIALMQDQVEALRDNGIGATFLNSSLNLHQVRSR-EQAILSGKT--KLLYVAPERLL 121
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L I + + AIDEAHC+S WGHDFRP YR+L LR P VP LALTAT
Sbjct: 122 NEKFLPFLDLIREKIGIAAFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPGVPTLALTAT 181
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V++D+++ L L P + +SFNRPNL+YEV+ K +Y+ L +++ + I
Sbjct: 182 ATDRVRQDIIQQLGLSQPSIHIASFNRPNLYYEVQPKQ--KQSYSQLLQIIR-QSEGSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R DE++ L I+ YHAGL+D R+ +I +V+VAT+AFGMGI
Sbjct: 239 VYCLSRRKVDEIAFKLQQDKIAALPYHAGLSDTERAENQTRFIRDDVRVMVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H ++P+++E +YQESGRAGRD ++ L+ G D + +E+++ +
Sbjct: 299 NKPDVRFVIHHDLPRNIEGYYQESGRAGRDGETARCTLFLGYGDIKTIEYLIDQKTDLQG 358
Query: 383 QSFSTRERSSKKSISDFSQ--------VLDVAGKRFS 411
Q + R + + DF++ VL G+RF+
Sbjct: 359 QRIA---RQQLRQVIDFAEGTDCRRTIVLGYFGERFA 392
>gi|224026746|ref|ZP_03645112.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
gi|224019982|gb|EEF77980.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
Length = 608
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/342 (45%), Positives = 220/342 (64%), Gaps = 9/342 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ QFR Q + I +L RD LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MLKTLKSYFGYTQFRPLQQEIITCILEKRDTLVLMPTGGGKSICYQLPALMMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+S+ V + + G+ ++LLY++PE L +
Sbjct: 61 PLISLMKDQVESLQANGIIARALNSSNDETVNANLRFECMQGR--VKLLYISPERLLSEL 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LR P+VPI+ALTATA
Sbjct: 119 NFL--LKDIR----VSLFAIDEAHCISQWGHDFRPEYTQLKVLRQQFPNVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+++ L ++NP V SSF+RPNL EV+ + + + + I+Y
Sbjct: 173 KITRQDIVQQLAMRNPQVFISSFDRPNLSLEVKRGYQQKEKIRSILQFIDRHPGESGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R T ++++ L G+ A YHAGL+ AR + DD+I+ R Q+V AT+AFGMGID+
Sbjct: 233 CMSRNTTEKVAEMLEDHGLHVAVYHAGLSTAARDAAQDDFINDRVQIVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGD 334
>gi|387132182|ref|YP_006298154.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
gi|386375030|gb|AFJ09244.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
Length = 727
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 216/349 (61%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKHFFGFDKFKGAQETIIRNVLEGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDNVKADIQSGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEDSIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDQIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNRQIIKFIKQNLGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANEIKAEPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFYSKNDLKKLE 349
>gi|212710158|ref|ZP_03318286.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
gi|212687157|gb|EEB46685.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
Length = 608
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 229/370 (61%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL K GI LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGITLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E GK ++LLYV PE T F+ +L+
Sbjct: 81 QVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGK--IKLLYVAPERLLTDYFIQQLESW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 D----IALLAVDEAHCISQWGHDFRPEYRSLGQLRRALPNVPVMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLELNDPLIHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKSGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL + R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLENAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|325103763|ref|YP_004273417.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
gi|324972611|gb|ADY51595.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
Length = 728
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 236/404 (58%), Gaps = 29/404 (7%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L+ L+ FG F+ Q I ++L+ D F +MPTGGGKS+CYQ+PAL G L
Sbjct: 4 KKSLIDNLQTFFGFDNFKGDQEAIITSILNKEDTFVIMPTGGGKSICYQLPALMSEGTAL 63
Query: 83 VVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ T ++ ED+ SGK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGYDSIAHFLNSSLTKTETNRVKEDVISGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ LK + ++ VA+DEAHCIS WGHDFRP YRK+ + N + D+PI+A
Sbjct: 122 SLIKQENIDFLKSV----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVVNNIREDIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + N V KSSFNR NLFYEVR K + + D+ +K N
Sbjct: 178 LTATATPKVQTDIQKNLGMMNANVFKSSFNRGNLFYEVRPKG---NVFKDIIKYIKNNPG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E++ L GI YHAGL+ K R+ D ++ V+VAT+AF
Sbjct: 235 KSGIVYCLSRKKVEEVANALEINGIRSLPYHAGLDAKVRADTQDKFLMEEVDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCIAFYSEKDVDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSK--KSISDFS--------QVLDVAGKRFSR 412
+ S RE ++ K + D+S Q+L G+ F+
Sbjct: 352 ---DKPVSEREIGTQILKEVIDYSESAVCRRKQILHYFGENFNE 392
>gi|406933324|gb|EKD68008.1| hypothetical protein ACD_48C00110G0001, partial [uncultured
bacterium]
Length = 334
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 209/333 (62%), Gaps = 9/333 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG FR Q + +QAV+ +D LMPTGGGKS+CYQ+PA + G+ +VVSPLIA
Sbjct: 10 LKHTFGFDSFRPMQEEIVQAVIEKKDVLVLMPTGGGKSLCYQLPATVQDGLTVVVSPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL GI FL+S+ + I E L+ G + +LYV+PE TP F
Sbjct: 70 LMKDQVEGLVANGIKAAFLNSSLELDEHQDIREQLERG--DIDILYVSPEKLITPNFQYS 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK + + L AIDEAHCIS WGHDFRP Y +L +L+ PD+PI+ALTATA +K
Sbjct: 128 LKKWN----VQLFAIDEAHCISQWGHDFRPGYTQLRTLKESFPDIPIIALTATADKTTRK 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++ L L++P V SSF+RPNL V + + +K I+YCL R
Sbjct: 184 DILAQLKLKDPKVFISSFDRPNLALNVLPAK---KRIERIITFVKKRKHESGIIYCLSRN 240
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
++++ L GI+ YHAG+ R+ DD+I R +VVATVAFGMGID+ +VR
Sbjct: 241 QTEKVATALIQEGINAGYYHAGMQSHERAKAQDDFIHGRTNIVVATVAFGMGIDKSNVRY 300
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H N+PK++E +YQE GRAGRD LPS++LL+Y
Sbjct: 301 VIHHNLPKNLEGYYQEIGRAGRDGLPSETLLFY 333
>gi|218128449|ref|ZP_03457253.1| hypothetical protein BACEGG_00017 [Bacteroides eggerthii DSM 20697]
gi|217989340|gb|EEC55653.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii DSM 20697]
Length = 727
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 222/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|436838278|ref|YP_007323494.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384069691|emb|CCH02901.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 735
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 231/354 (65%), Gaps = 9/354 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ ++G+ +FR Q I+++LSGRD LMPTGGGKS+C+QIPAL +PG+ +VVSPLIA
Sbjct: 27 LKRYYGYDRFRPMQEAVIRSILSGRDTVVLMPTGGGKSVCFQIPALMQPGLCVVVSPLIA 86
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV + GIA +++S+Q + + E+ G+ ++LLYV+PE + F +
Sbjct: 87 LMKDQVEAMHLNGIAAAYINSSQGAKEIRAVEENCRKGQ--IKLLYVSPEKLLSESFYTF 144
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L + L++ AIDEAHCISSWGHDFRP Y +L++LR + P+VPI+ALTATA ++
Sbjct: 145 LNSLK----LSMFAIDEAHCISSWGHDFRPEYTQLNTLRRWFPNVPIIALTATADRLTRQ 200
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ + L + +P V SFNR NL +V + + +L DT I+YCL R
Sbjct: 201 DIADRLAMHDPAVFIDSFNRTNLSLQVLPGT---NRIGQIAKLLSLKPDTSGIIYCLSRK 257
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+C+ ++A L G S A YHAG++ R+ V + ++ +++ AT+AFGMGID+ +VR
Sbjct: 258 SCESVAAKLIEKGYSAAYYHAGMDPNERARVQEAFLRDDVRIMCATIAFGMGIDKSNVRW 317
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
V H+N+PK++E +YQE GRAGRD LPS+++L+Y D + +L++N N Q
Sbjct: 318 VMHYNMPKNIEGYYQEIGRAGRDGLPSQTVLFYSFADVATYKDMLTENNPANLQ 371
>gi|336171234|ref|YP_004578372.1| RecQ family ATP-dependent DNA helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725806|gb|AEG99943.1| ATP-dependent DNA helicase, RecQ family [Lacinutrix sp. 5H-3-7-4]
Length = 730
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/351 (45%), Positives = 222/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG ++F+ Q I+++L ++ F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 9 LKKHFGFSEFKGLQEKVIESILDKKNTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 68
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS +VK ++ ED+ +G +LLYV PE
Sbjct: 69 LMKNQVDAIRGVSDEHGIAHVLNSSLNKTEVK-QVKEDITNG--ITKLLYVAPESLTKEE 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LTATA
Sbjct: 126 NVEFLRGVK----ISFMAVDEAHCISEWGHDFRPEYRNLRTIIQRIGDNIPIIGLTATAT 181
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K D+ D+ +K N IVY
Sbjct: 182 PKVQEDILKNLRMTDAKTFKASFNRPNLYYEVRPKTKTVDS--DIIRFVKQNSGKTGIVY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 240 CLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 300 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMS 350
>gi|261494329|ref|ZP_05990823.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309978|gb|EEY11187.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 599
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 235/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNVFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN PDVP++ALTATA P
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPDVPLMALTATADPT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L + IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKFISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQ 401
++ ++I DF++
Sbjct: 355 I---KQHKLQAIGDFAE 368
>gi|441506545|ref|ZP_20988513.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
gi|441425751|gb|ELR63245.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
Length = 613
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 223/341 (65%), Gaps = 13/341 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q + I+AV GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 19 QILQDVFGYQTFRTGQQEVIEAVAEGRDCLVIMPTGGGKSLCYQIPALMCDGLTLVVSPL 78
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A L+STQ+ + + Y + G+ ++L YV+PE T FM
Sbjct: 79 ISLMKDQVDQLKANGVAAACLNSTQSREAMQETYRAMQDGE--VKLAYVSPERVMTREFM 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ + L+LVA+DEAHCIS WGHDFRP Y L +L+ + +PI+ALTATA
Sbjct: 137 ERLRDMP----LSLVAVDEAHCISQWGHDFRPEYAALGTLKQHFDQLPIIALTATADETT 192
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +P + SF+RPN+ Y + +YK + + L S L+ C IVYC
Sbjct: 193 RQDILSRLSLTDPHIYLGSFDRPNIRYTLQEKYKPM-----SQLSSYLRGVRGQCGIVYC 247
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++++ L GI AAYHAGL R+ V +D+ +VVATVAFGMGI++
Sbjct: 248 NSRKRVEQITEKLCESGIRAAAYHAGLEFDERARVQEDFQRDDIHIVVATVAFGMGINKP 307
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H++IP+++E++YQE+GRAGRD LP++++++Y D
Sbjct: 308 NVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSD 348
>gi|73668704|ref|YP_304719.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
gi|72395866|gb|AAZ70139.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
Length = 881
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/369 (42%), Positives = 236/369 (63%), Gaps = 27/369 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L +FG+ FR Q + I+ VL +D F LMPTGGGKSMCYQ+PAL G+ +VVSPLI+
Sbjct: 12 LHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLMEGVTVVVSPLIS 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM++QV GL+ GIA ++S Q+ + VKT E+ L++LYV PE PG
Sbjct: 72 LMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLEN------RLKVLYVAPERLMMPG 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY---LPDVPILALTAT 202
++ LKK G ++L+AIDEAHCIS WGHDFRP YRKL LR+ PD+PI+ALTAT
Sbjct: 126 TLAFLKK----GKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDIPIIALTAT 181
Query: 203 AAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
A +V++D++ L L + P V +SFNR NL+YEVR K + ++++ L+ +
Sbjct: 182 ATERVREDIISQLNLHLPPEKGPYV--ASFNRKNLYYEVRPKK---ETFSEITDYLRRHR 236
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R + + L+ L+ G YHAGL+D R+ + +I +++VAT+A
Sbjct: 237 GEAGIIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEIIVATIA 296
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +S+
Sbjct: 297 FGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFISQK 356
Query: 378 QSKNSQSFS 386
++ + S
Sbjct: 357 TNEKEKDIS 365
>gi|410086312|ref|ZP_11283024.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
gi|409767157|gb|EKN51237.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
Length = 608
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 221/336 (65%), Gaps = 13/336 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L FG+ QFR Q D I V GRDC +MPTGGGKS+CYQIPAL PG+ +VVSPLI
Sbjct: 16 ILHQIFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ G+ +L+S QT Q + K+ E + + ++LLYV PE F+
Sbjct: 76 SLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNR--IKLLYVAPERLLMSSFIR 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L++ +L+A+DEAHCIS WGHDFRP Y + LR +LP VP++ALTATA +
Sbjct: 134 QLQQWQP----SLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D+ L L +PL+ SSF+RPN+ Y + +YK A+ L ++ C I+YC
Sbjct: 190 SDICSRLRLSDPLIHISSFDRPNIRYTLVEKYK-----AFDQLWMFVRGQKGQCGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++++A L G+S AAYHAGL++ R V D ++ QVVVATVAFGMGI++ +
Sbjct: 245 SRNKVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
VR V HF+IP+++E++YQE+GRAGRD + ++++L+Y
Sbjct: 305 VRFVAHFDIPRNIESYYQETGRAGRDGVSAEAVLFY 340
>gi|386820490|ref|ZP_10107706.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386425596|gb|EIJ39426.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 733
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 224/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+ +++ ++ F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKQYFGFSQFKGLQEKVIKNIINDQNTFVIMPTGGGKSLCYQLPALVKDGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ KGIA SS +V+ ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNKGIAHVLNSSLNKTEVR-QVKEDITNG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ + + ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ALTATA
Sbjct: 129 YVEFFRTVK----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIQRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNRPNL+YEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGVNSAEVYKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNEGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+ YHAGL+ K R+ D ++ +VVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDTDIVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMS 353
>gi|393789452|ref|ZP_10377573.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
gi|392650900|gb|EIY44566.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
Length = 726
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 223/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKQYFGFDKFKGNQEAIIQNLLNGGDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTTNIDR--DIIKFIRNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD K + +Y D +++E
Sbjct: 298 IDKPDVRYVMHYDIPKSLEGYYQETGRAGRDGGEGKCITFYTNKDLQKLE 347
>gi|327265368|ref|XP_003217480.1| PREDICTED: Bloom syndrome protein homolog [Anolis carolinensis]
Length = 1383
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/389 (42%), Positives = 227/389 (58%), Gaps = 2/389 (0%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M +SP A + + + ++K+ FG FR Q +AI A L G DCF LM
Sbjct: 609 MVESPSARNPSLERFRGCSFPHSNEMMKVFHKRFGLHHFRTNQQEAINAALLGEDCFVLM 668
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV L I +L+ +T ++I
Sbjct: 669 PTGGGKSLCYQLPACILVGVTIVISPLRSLIVDQVQKLTSMDIPATYLTGDKTDAEASRI 728
Query: 121 YEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
Y L P ++LLYVTPE + G MS L+ ++ R LL IDEAHC+S WGHDFR
Sbjct: 729 YMQLSKKDPIIKLLYVTPEKVCSSGRLMSTLENLYQRQLLARFVIDEAHCVSQWGHDFRQ 788
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
Y++L+ LR VP++ALTATA P+VQKD++ L + P V SFNR NL Y+V K
Sbjct: 789 DYKRLNMLRKKFASVPMMALTATANPRVQKDILNQLEMLKPQVFSMSFNRHNLKYDVLPK 848
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
A L + K + I+YCL R CD +++ L G+S AYHAGL D+ R
Sbjct: 849 RPKSVALDCLQWIRKYHPYDSGIIYCLSRYECDSMASNLQKAGLSALAYHAGLPDETRDI 908
Query: 300 VLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358
V WI+ Q++ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S
Sbjct: 909 VQQKWINQDGCQIICATIAFGMGIDKPDVRFVIHASLPKSIEGYYQESGRAGRDGERSHC 968
Query: 359 LLYYGMDDRRRMEFILSKNQSKNSQSFST 387
LL+Y D R+ ++ + NS + T
Sbjct: 969 LLFYSYSDVTRLRRLILMEKDGNSHTRQT 997
>gi|317475725|ref|ZP_07934984.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
gi|316908108|gb|EFV29803.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
Length = 727
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 222/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 229/343 (66%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|53715360|ref|YP_101352.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|60683329|ref|YP_213473.1| ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343]
gi|265767847|ref|ZP_06095379.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|336412096|ref|ZP_08592554.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|375360137|ref|YP_005112909.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|383119914|ref|ZP_09940651.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|423252209|ref|ZP_17233211.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|423252529|ref|ZP_17233460.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|423261243|ref|ZP_17242144.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|423267768|ref|ZP_17246748.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|423272323|ref|ZP_17251291.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|423276779|ref|ZP_17255711.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|423283055|ref|ZP_17261940.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
gi|52218225|dbj|BAD50818.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|60494763|emb|CAH09569.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
9343]
gi|251944080|gb|EES84599.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|263252519|gb|EEZ24047.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|301164818|emb|CBW24378.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|335939268|gb|EGN01145.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|387774395|gb|EIK36507.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|392647821|gb|EIY41518.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|392660605|gb|EIY54214.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|392695515|gb|EIY88727.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|392695991|gb|EIY89195.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|392696027|gb|EIY89229.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|404581329|gb|EKA86028.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
Length = 726
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|359299526|ref|ZP_09185365.1| ATP-dependent DNA helicase RecQ [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304439|ref|ZP_10823509.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
gi|400378027|gb|EJP30892.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
Length = 601
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 220/341 (64%), Gaps = 9/341 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I AVL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEVIDAVLAGRDCLVIMTTGGGKSLCYQVPALCLEGITLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +L+STQT + + + + SG+ L+LLY++PE T GF ++
Sbjct: 75 QVDQLLTNGIEAAYLNSTQTQEEQQAVEQKALSGQ--LKLLYLSPEKVMTQGFF----RL 128
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +A+DEAHC+S WGHDFRP Y L +LR P++P++ALTATA P + D++
Sbjct: 129 VSYCKVSFIAVDEAHCVSQWGHDFRPEYTLLGNLRKTFPNIPLMALTATADPTTRADILH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K L + A IVYC R +E
Sbjct: 189 HLRLNDPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFINAQKGKSGIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARHISVMGYHAGMSVQQRETVQNAFQRDNVQVVVATIAFGMGINKSNVRFVVHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
++P+S+E++YQE+GRAGRD LPS+++++Y D ++ IL
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAVMFYDPADYAWLQKIL 346
>gi|242013217|ref|XP_002427311.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
gi|212511652|gb|EEB14573.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
Length = 1152
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 222/357 (62%), Gaps = 5/357 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+K+ FG FR QL + A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 395 LIKMFHLKFGLKSFRTNQLQVMNAALLGHDCFVLMPTGGGKSLCYQLPAIVSQGVTVVIS 454
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I LS IY L+ +P ++LLYVTPE + A+
Sbjct: 455 PLRSLILDQVTKLVTLDIKACHLSGDVKESEVVDIYRKLNMPEPEIKLLYVTPEKVGAST 514
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ ++++R +L IDEAHC+S WGHDFRP Y+KL LR P+V I+ALTATA
Sbjct: 515 SLRNIFSRLYNRNMLARFVIDEAHCVSQWGHDFRPDYKKLRELRENYPNVNIMALTATAT 574
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAI 262
P+V+ D++ L +++P SSFNR NL Y V+ K D+ ++++ + DT I
Sbjct: 575 PRVRIDILHQLKVKSPKWFLSSFNRSNLCYAVKEKKG-KSTLKDIAALIQQEFSRDT-GI 632
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R C++++ L GI YHAGLND R+ + W++ + +VV AT+AFGMGI
Sbjct: 633 IYCFSRKECEDVARDLKVHGIGAIPYHAGLNDTERTKAQNLWMNGKVKVVCATIAFGMGI 692
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
D+ DVR V H+++PKS+E +YQESGRAGRD + +LYY D+ RM +++ +QS
Sbjct: 693 DKLDVRYVFHYSLPKSIEGYYQESGRAGRDGEKATCILYYSYRDKHRMLKLINMDQS 749
>gi|329962624|ref|ZP_08300572.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
gi|328529655|gb|EGF56553.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
Length = 727
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 221/353 (62%), Gaps = 13/353 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +
Sbjct: 5 KTNLTDQLKKYFGFDTFKGNQEAIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTGI 64
Query: 83 VVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
V+SPLIALM+NQV ++ + GIA F++S+ ++ D+ SGK +LLYV P
Sbjct: 65 VISPLIALMKNQVDAMRNFSEDDGIA-HFINSSLNKSAIDQVKSDILSGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 122 ESLTKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 178 LTATATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPE 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 348
>gi|422019090|ref|ZP_16365640.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
gi|414103632|gb|EKT65206.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
Length = 608
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/370 (44%), Positives = 229/370 (61%), Gaps = 16/370 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E GK ++LLYV PE T F+ +L+
Sbjct: 81 QVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGK--IKLLYVAPERLLTDYFIQQLESW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 D----IALLAVDEAHCISQWGHDFRPEYRSLGQLRRALPNVPVMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLELNDPLIHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKSGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL + R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLENAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQ 401
+I+ F++
Sbjct: 367 KLNAIAAFAE 376
>gi|195501810|ref|XP_002097953.1| GE10090 [Drosophila yakuba]
gi|194184054|gb|EDW97665.1| GE10090 [Drosophila yakuba]
Length = 1490
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 219/358 (61%), Gaps = 7/358 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 728 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 787
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 788 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 847
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 848 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 907
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L+N SSFNR NL Y V K LDD + S
Sbjct: 908 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYMVLPKKGTSTLDDISRYIRS---KPAHFSG 964
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CDE S + G+ AYHAGL D R DW++ + +V+ AT+AFGMG
Sbjct: 965 IIYCLSRKECDETSKKMCKDGVRSVAYHAGLTDSEREGRQKDWLTGKIRVICATIAFGMG 1024
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
ID+ DVR V H+++PKS+E +YQE+GRAGRD ++ +LYY D R++ ++ +++
Sbjct: 1025 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVAECILYYNYADMLRLKKMMDSDKA 1082
>gi|402492603|ref|ZP_10839363.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 728
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/400 (42%), Positives = 232/400 (58%), Gaps = 18/400 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QFR Q I+++L D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 6 LQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS V T + D+ +G +LLYV PE
Sbjct: 66 PLIALMKNQVDAIRSISSENGIAHVLNSSLNKTDVAT-VKADISNG--ITKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LT
Sbjct: 123 VKEEYAEFL----ASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIQSIGDNIPIIGLT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNLFYEVR K + D+ +K N
Sbjct: 179 ATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTA--NVETDIIRFVKQNTGKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 237 GIIYCLSRKRVEELAQALQVNGINAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS----K 376
GID+ DVR V H++IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 297 GIDKPDVRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVA 356
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGN 416
Q + ++ SIS +L G+ F V G+
Sbjct: 357 EQEIGNALLQEVVAFAETSISRRKFILHYFGEEFDEVTGD 396
>gi|297849458|ref|XP_002892610.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297338452|gb|EFH68869.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 1189
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 246/427 (57%), Gaps = 19/427 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 447 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 506
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 507 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 566
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 567 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 626
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 627 QALGLVNCVVFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDC 684
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 685 EKVSERLQEFGHKTAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 744
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ S + R
Sbjct: 745 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 803
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ +V FL LV H ++ + C
Sbjct: 804 ----VASLGRILETNTENLLRMVSYCENEV----ECRRFLQLV------HFGEKFDSTNC 849
Query: 452 KNSCDAC 458
K +CD C
Sbjct: 850 KKTCDNC 856
>gi|408489878|ref|YP_006866247.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408467153|gb|AFU67497.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 694
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 11/337 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q + I+ VLSG+D +MPTGGGKSMC+Q+PAL G+ LV+SPLIA
Sbjct: 13 LKKYFGYDSFRKDQAEIIEHVLSGKDALVVMPTGGGKSMCFQLPALKFEGLTLVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GLK GI +F +STQT +V+ +I + ++LLY PE +S
Sbjct: 73 LMKDQVDGLKSNGIPADFYNSTQTPEVQLEIKSKV--ANRDIKLLYTAPE------SLSG 124
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++I S ++ VA+DEAHCISSWGHDFRPSY++L L+ LP PI+ALTATA +K
Sbjct: 125 LQEILSETYISCVAVDEAHCISSWGHDFRPSYQQLGFLKKSLPKTPIIALTATADKTTRK 184
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L + SSF+R N+F EVR + D + + L D I YCL R
Sbjct: 185 DILKQLGIPKAKAFLSSFDRENIFLEVR---VADKRLKQIENFLLRRKDEAGIAYCLSRK 241
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++L+ L+ G AYHAGL + RS + ++++ + Q++ ATVAFGMGID+ +VR
Sbjct: 242 STEKLAKDLTKKGFKAKAYHAGLPSEERSKIQEEFVYDKTQIICATVAFGMGIDKSNVRW 301
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V H+N+PK++E +YQE GRAGRD L + +L+++ D
Sbjct: 302 VIHYNMPKNLEGYYQEIGRAGRDGLQANALMFHSYAD 338
>gi|340351994|ref|ZP_08674884.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
gi|339615729|gb|EGQ20399.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
Length = 727
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 218/349 (62%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++ FG +F+ Q IQ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKYFFGFDKFKGAQEAIIQNVLAGNDTFVLMPTGGGKSLCYQLPSLIMDGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDHVKADILNGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEESIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDLIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRSKKNEEDTNRQIIKFIKQNPGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANDIKAEPYHAGLDSETRSRTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGQCIVFYSKNDLKKLE 349
>gi|408674061|ref|YP_006873809.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387855685|gb|AFK03782.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 792
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 221/350 (63%), Gaps = 10/350 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ L + L+ FG FR +Q I ++SG++ F +MPTG GKS+CYQ+PA+ G +
Sbjct: 7 QQTLKEKLKEIFGFDAFRGEQEPIIHNIVSGKNTFVIMPTGAGKSLCYQLPAMVLDGTAI 66
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV + GI +FL+ST T++ D+ SG +LLY+ PE
Sbjct: 67 VISPLIALMKNQVDQMSAFGINAQFLNSTLNKSEMTRVKNDVMSG--DCKLLYIAPESLT 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LKK L+ +A+DEAHCIS WGHDFRP YR++ + + + P++PI+ALTA
Sbjct: 125 KEDNLTFLKK----AKLSFIAVDEAHCISEWGHDFRPEYRRIRGIIDDIDPNLPIIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ ++L ++ + KSSFNR NL+YE+R K D+ L + N
Sbjct: 181 TATPKVQQDIQKNLSMEQSHIFKSSFNRKNLYYEIRPKI---DSKKQLIKYIANNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L+ GI YHAGL+ R D +++ ++VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEEIAGLLNVNGIKALPYHAGLDADTRMKNQDAFLNEECDIIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++ PKS+E +YQE+GRAGRD L L++Y DD ++E
Sbjct: 298 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYAYDDILKLE 347
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 242/379 (63%), Gaps = 10/379 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ +FG+ FR Q I+ L+ +D +MPTGGGKS+C+Q+PAL + G+ +V
Sbjct: 5 QPLESTLKKYFGYTSFRLGQQQIIEQALNNQDLLVVMPTGGGKSLCFQLPALLRKGLTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L+ GI FL+ST T QV+++ E + SGK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVQSLRNNGIGATFLNSTLTTYQVRSR-EEAILSGK--VKLLYVAPERLL 121
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ F+ + + + + AIDEAHC+S WGHDFRP YR+L +LR P+VP +ALTAT
Sbjct: 122 SDRFLPFIDLVQHQIGIASFAIDEAHCVSEWGHDFRPDYRQLRALRQRYPNVPTIALTAT 181
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V+ D+++ L L P++ +SFNRPNL+Y+V+ K AY L ++ + + I
Sbjct: 182 ATDRVRSDIIQQLNLTKPIIHVASFNRPNLYYDVQPKQ--KQAYNQLKQLVTKH-EGAGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R D+++ L GIS YHAGL+D R S +I +++VATVAFGMGI
Sbjct: 239 IYCLSRRKVDDITMKLQQDGISALPYHAGLSDAERESNQTRFIRDDARLMVATVAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++P+++E++YQESGRAGRD ++ +++G D + +E+++ +
Sbjct: 299 NKPDVRFVIHYDLPRNIESYYQESGRAGRDGGAARCTIFFGYGDVKTVEYLIDQKTDVQE 358
Query: 383 QSFSTRERSSKKSISDFSQ 401
Q + ++ + I D++Q
Sbjct: 359 QRIAKQQL---RQIIDYAQ 374
>gi|158290315|ref|XP_311930.4| AGAP002967-PA [Anopheles gambiae str. PEST]
gi|157017834|gb|EAA07614.4| AGAP002967-PA [Anopheles gambiae str. PEST]
Length = 1425
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/348 (46%), Positives = 214/348 (61%), Gaps = 2/348 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +VVSPL +L+ +
Sbjct: 649 FGLRTFRPIQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAVLTVGLTIVVSPLKSLILD 708
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV L I LS M +IY+DL S P L+LLYVTPE ++++ F + L
Sbjct: 709 QVQKLNSLDIPAGHLSGEANMADVQRIYDDLYSSCPELKLLYVTPEKISSSAKFQNLLSA 768
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ R LL + IDEAHC+S+WGHDFRP Y+KLS+LR P VPI+ALTATA P+V+ D++
Sbjct: 769 LYRRSLLGRIVIDEAHCVSAWGHDFRPDYKKLSALREQFPTVPIIALTATANPRVRMDIL 828
Query: 213 ESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L ++ SFNRPNL Y V K + + + K IVYCL + C
Sbjct: 829 AQLKLARDTRWFLCSFNRPNLKYLVLPKKGVSTKAEMIELIRKRFPRDTGIVYCLSKKEC 888
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
D+L+ GI +YHAGL+D R + +WI R +VV AT+AFGMGID+ DVR V
Sbjct: 889 DQLADEFRRAGIKAKSYHAGLSDGVREATQKEWIGDRIKVVCATIAFGMGIDKPDVRYVL 948
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
H+ +PKS+E +YQESGRAGRD + +LYY D R ++ + S
Sbjct: 949 HYCMPKSIEGYYQESGRAGRDGEIATCVLYYNYSDMLRYRKMMDNDTS 996
>gi|320167845|gb|EFW44744.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1784
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 164/405 (40%), Positives = 246/405 (60%), Gaps = 16/405 (3%)
Query: 28 KLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
K +R FG + FR QL+ I +SGR C LMPTGGGKS+CYQ PA+ G+ +VVSP
Sbjct: 825 KAMRKVFGLNKGFRTHQLEVINCTMSGRHCLVLMPTGGGKSLCYQNPAVISKGVTIVVSP 884
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG 145
L++L+++QV L + I FLS +QT ++++Y +L +++Y+TPE ++ +
Sbjct: 885 LLSLIQDQVEALVQLNIGAVFLSGSQTEAEQSRVYLELSRQDERCKVVYMTPEKISHSTR 944
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L ++ L IDEAHC+S WGHDFRP Y++L L + P VP++ALTATA
Sbjct: 945 LLSQLDMLYQSKRLARFVIDEAHCVSQWGHDFRPDYKQLRMLHDRFPTVPVMALTATATE 1004
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD--LLDDAYADLCSVLKAN-GDTCAI 262
+V+ D+M+ L + + SFNR NL Y+V KD LDD + ++K I
Sbjct: 1005 RVRSDIMKQLNIHQAEIFVQSFNRENLRYQVYKKDKTTLDD----IARMIKKQWPKDSGI 1060
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R C+ ++ L GI+ YHAG++ R+ V DWI +RKQV+VAT+AFGMGI
Sbjct: 1061 VYCLSRKDCETVARELVQRGIAATFYHAGMDPGDRAVVQRDWIGNRKQVIVATIAFGMGI 1120
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++PKS+E +YQESGRAGRD + ++YY D+ +ME ++ K S
Sbjct: 1121 NKPDVRYVFHYSLPKSLEGYYQESGRAGRDGYEAHCIMYYSYGDKSKMESMIEKGDSSAE 1180
Query: 383 QSFSTRERSSK-----KSISDFSQVLDVA--GKRFSRVLGNRYWD 420
Q ++ +K +++ + +V +A G++F R L R D
Sbjct: 1181 QKRIHKDNLAKMIMYCENVVECRRVQQLAYFGEKFDRALCKRTCD 1225
>gi|225681066|gb|EEH19350.1| ATP-dependent DNA helicase hus2/rqh1 [Paracoccidioides brasiliensis
Pb03]
Length = 1550
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 222/367 (60%), Gaps = 13/367 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 692 FGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 751
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 752 LMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 809
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 810 ALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 869
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 870 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 929
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 930 YCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 989
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H +PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 990 DKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEGSFE 1049
Query: 383 QSFSTRE 389
Q R+
Sbjct: 1050 QKKRQRQ 1056
>gi|166240658|ref|XP_645178.2| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|165988694|gb|EAL71344.2| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 973
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/373 (42%), Positives = 231/373 (61%), Gaps = 21/373 (5%)
Query: 27 VKLLR-WH----------FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
+KL R WH FG+ +FR+ Q++AI ++L RD F +PTGGGKS+C+QIP++
Sbjct: 456 LKLKREWHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSI 515
Query: 76 AKP-GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRL 133
G+ V+SPL+ALM++QV LK GI E ++S+ + + + + L +G+ L+L
Sbjct: 516 VDHRGVTFVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKL 575
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
+Y+TPE A F+ L +++ +G L + +DEAHCIS WGH FRP YR +S+ R+ P
Sbjct: 576 IYITPERLAQSEFLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPS 635
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-----LLDDAYAD 248
VPI A TA+A P V+ D+ SL + NP+ + SSF RPNL Y+VR K LL D Y +
Sbjct: 636 VPISAFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIY-N 694
Query: 249 LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
S N + I+YC C+ ++ YLS G+S YHA L++ RS + DW +
Sbjct: 695 FISFKYPN--STGIIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGE 752
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++V T+AFGMGID+ D R V H ++P+SME++YQ++GRAGRD S LL+Y D
Sbjct: 753 FKIVCTTIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLM 812
Query: 369 RMEFILSKNQSKN 381
R + I+S NQ K+
Sbjct: 813 RFKHIISLNQPKD 825
>gi|427416527|ref|ZP_18906710.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
gi|425759240|gb|EKV00093.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
Length = 736
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 227/365 (62%), Gaps = 5/365 (1%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ FR Q I+ VL +D +MPTGGGKS+CYQ+PAL + G+ +VV
Sbjct: 12 SLEAALKHFFGYDDFRHYQRAIIEQVLKNQDVLVIMPTGGGKSLCYQLPALLRLGVTIVV 71
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GIA FL+S+ T + L G ++LLY+ PE P
Sbjct: 72 SPLIALMQDQVRSLEDNGIAATFLNSSLTFNEVRDREQALLRG--DIKLLYLAPERLMNP 129
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L++I L+ AIDEAHC+S WGHDFRP YR+L L+ P VP++ALTATA
Sbjct: 130 SFWPLLEQIQQTVGLSAFAIDEAHCVSEWGHDFRPEYRQLFQLKQQFPQVPVMALTATAT 189
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D+++ L L +P V S FNR NL+YEV K +Y L ++K I+Y
Sbjct: 190 ERVRQDIIQQLRLNDPQVFVSGFNRQNLYYEVTPKT--KQSYDHLLKLVKQQSG-AGIIY 246
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L GIS YHAGL+ K R + +I +++VAT+AFGMGI++
Sbjct: 247 CLSRKRVNEIAFRLKQDGISALPYHAGLSAKERQGNQEQFIRDDVRIIVATIAFGMGINK 306
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ +++ D +E+++S+ + Q
Sbjct: 307 PDVRFVIHYDLPRTIESYYQESGRAGRDGDPANCTVFFSYADVATVEYLISQKPDEQEQR 366
Query: 385 FSTRE 389
+ ++
Sbjct: 367 IARQQ 371
>gi|86143313|ref|ZP_01061715.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
gi|85830218|gb|EAQ48678.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
Length = 704
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 224/345 (64%), Gaps = 11/345 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+K L+ L+ +FG+ FR++Q I+ VL+G D +MPTGGGKS+CYQ+PA+ G+
Sbjct: 6 DKNTLLTTLKTYFGYDSFRNEQSAIIETVLNGEDAIVIMPTGGGKSICYQLPAVLFEGLT 65
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLIALM++QV GLK GIA +F +S+Q+ + + I + + L+LLYV PE
Sbjct: 66 LVISPLIALMKDQVDGLKANGIAADFYNSSQSAEDQQAIIDQV--ANRDLKLLYVAPE-- 121
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L I ++ ++ +AIDEAHCISSWGHDFRPSY++L L+ LP +P++ALTA
Sbjct: 122 ----SLAGLNPILNKTYISCIAIDEAHCISSWGHDFRPSYQQLGFLKKSLPQIPMIALTA 177
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA ++D+ L + + SSF+R N+ EVR D D + L+ DT
Sbjct: 178 TADKATREDIANQLNISHAKQFISSFDRKNITLEVRAADKRLD---QIKRFLEKRPDTSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R T + +S L+A GI YHAGL+ R+ V +D+I + QVV ATVAFGMG
Sbjct: 235 IIYCLSRKTTESVSTSLAAEGIKATCYHAGLSFDERNKVQEDFIYDKTQVVCATVAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
ID+ +VR V H+N+PK++E +YQE GRAGRD L S +LL++ D
Sbjct: 295 IDKSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLKSHALLFHSYAD 339
>gi|410029263|ref|ZP_11279099.1| ATP-dependent DNA helicase RecQ [Marinilabilia sp. AK2]
Length = 726
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 220/350 (62%), Gaps = 12/350 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG +QFR Q + +L ++ F +MPTG GKS+CYQ+PA+ + G +
Sbjct: 6 KEKLKKI----FGFSQFRGNQEPIVDNILGQKNTFVIMPTGAGKSLCYQLPAVIQEGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L GI FL+ST K+ +++ SGK +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
+ LK L+ VAIDEAHCIS WGHDFRP YRK+ S+ L ++PI+ALTA
Sbjct: 120 KEENILFLKD----AKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQLGKELPIIALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNR NL+YE+R K L ++ + +K+
Sbjct: 176 TATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEIRPK-LKNETKKQIIKYIKSQKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L GI A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAELLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLE 344
>gi|374594551|ref|ZP_09667555.1| ATP-dependent DNA helicase RecQ [Gillisia limnaea DSM 15749]
gi|373869190|gb|EHQ01188.1| ATP-dependent DNA helicase RecQ [Gillisia limnaea DSM 15749]
Length = 701
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/346 (44%), Positives = 220/346 (63%), Gaps = 13/346 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ L+ L+ +FG FR Q I +V +G D +MPTGGGKS+C+Q+PA+ P I
Sbjct: 2 EEMQLLSTLKEYFGFESFRPLQRKIIDSVFAGDDNLVIMPTGGGKSICFQLPAILLPKIT 61
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
LV+SPLIALM++QV GL GI+ FL+S+Q + + I++ +D K L+LLYV PE L
Sbjct: 62 LVISPLIALMKDQVDGLTANGISAAFLNSSQAFEDQQAIFQQIDENK--LKLLYVAPESL 119
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
F+S G ++L+AIDEAHCISSWGHDFRP+Y +L L+N P P++ALT
Sbjct: 120 QVIDRFLSD-------GKVSLIAIDEAHCISSWGHDFRPAYTQLGYLKNRFPSTPLIALT 172
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA +KD+ L + +SF+R NL EVR D D +KA +
Sbjct: 173 ATADKATRKDICNQLNIPGAKKHVASFDRKNLSLEVRPGTKRFDQIVDF---IKARKNES 229
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R ++++A L A G+ AYHAGL+ R+ + DD+I+ KQ++ AT+AFGM
Sbjct: 230 GIIYCLSRKNTEDIAAKLKANGLQAEAYHAGLSHLERTKIQDDFINDTKQIICATIAFGM 289
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
GID+ ++R V H+N+PK++E +YQE GRAGRD LPS ++L++ D
Sbjct: 290 GIDKSNIRWVIHYNMPKNLEGYYQEIGRAGRDGLPSDTMLFHSYAD 335
>gi|410627347|ref|ZP_11338088.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
gi|410153093|dbj|GAC24857.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
Length = 602
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 212/342 (61%), Gaps = 10/342 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ +FRD Q D I+ +L G D LMPTGGGKS+CYQIPAL G+ +VVSPLI
Sbjct: 14 VLKTVFGYDEFRDGQHDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSPLI 73
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L G++ +++S + + +Y + G+ +L+YV PE F+
Sbjct: 74 ALMKDQVDALVASGVSAAYINSNLSSEEMHNVYRGMQDGR--YKLIYVAPERLMQFDFIQ 131
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L L A+DEAHC+S WGHDFR YR+L L+ P+VP++ LTATA +
Sbjct: 132 RLHSLE----LALFAVDEAHCVSHWGHDFRKEYRRLGQLKQQFPNVPVVGLTATADITTR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+++ L LQ+P + K SF+RPN +RY L D + I+YC R
Sbjct: 188 SDILQQLALQDPFIFKGSFDRPN----IRYNQLFKYKATDQVIQYVKQQEGSGIIYCNSR 243
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+LS L+ GI+CA YHAGL R + D+I ++VATVAFGMGI++ +VR
Sbjct: 244 KKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINKSNVR 303
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V HF++P+S+EA+YQE+GRAGRD +P+++LL + D R+
Sbjct: 304 FVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARI 345
>gi|406659948|ref|ZP_11068084.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
gi|405556351|gb|EKB51290.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
Length = 726
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/350 (45%), Positives = 222/350 (63%), Gaps = 12/350 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG +QFR Q + +L G++ F +MPTG GKS+CYQ+PA+ + G +
Sbjct: 6 KEKLKKI----FGFSQFRGNQEPIVDNILKGKNTFVIMPTGAGKSLCYQLPAVIQDGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L GI FL+ST K+ +++ SGK +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTA 201
+ LK L+ VAIDEAHCIS WGHDFRP YRK+ S+ + + +PI+ALTA
Sbjct: 120 KEENILFLKD----AKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQVGESLPIIALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K++
Sbjct: 176 TATPKVQQDIQRNLHMEEADLYKSSFNRTNLYYEVRPK-IKNETKKQIIKYIKSHKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L GI A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIADLLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLE 344
>gi|71017581|ref|XP_759021.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
gi|46098743|gb|EAK83976.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
Length = 1291
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 225/362 (62%), Gaps = 10/362 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVV 84
+L+ F +FR QL+AI LSGRD F LMPTGGGKS+CYQ+PA G+ +V+
Sbjct: 406 VLKKFFKLKRFRRNQLEAINGTLSGRDVFVLMPTGGGKSLCYQLPACIDTDKATGVSIVI 465
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTAT 143
SPL++L+E+QV+ L K + L+ + + + SLRLLYVTPE + +
Sbjct: 466 SPLLSLIEDQVLDLVRKDVPAVKLTGDMSANDRRDAFNTARDRVGSLRLLYVTPEFIRQS 525
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
M L ++S+ L + +DEAHC+S WGHDFRP Y +L +LR+ P VPI+ALTATA
Sbjct: 526 NQAMELLDLLYSQKRLARIVVDEAHCVSQWGHDFRPHYTELGALRDKYPQVPIMALTATA 585
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKANGDTCA 261
+V KDV L ++N L L SSFNRPNL Y+VR K L D A +L ++ D C
Sbjct: 586 NARVIKDVKSCLKMRNVLQLSSSFNRPNLEYQVRKKPKSKLIDEIASF--ILTSHKDECG 643
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R +C+ ++ L GI+ YHA L RS V W + +V+VAT+AFGMG
Sbjct: 644 IVYCFSRESCETVADDLKKHGITAHHYHAKLGKDDRSKVQQRWKNGEYKVIVATIAFGMG 703
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H ++PKS+E +YQE+GRAGRD L S +LYY D RRME +LS+ +S+
Sbjct: 704 IDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGLDSVCILYYSWTDVRRMENMMLSEEKSQ 763
Query: 381 NS 382
+
Sbjct: 764 EA 765
>gi|218262311|ref|ZP_03476825.1| hypothetical protein PRABACTJOHN_02499 [Parabacteroides johnsonii
DSM 18315]
gi|218223462|gb|EEC96112.1| hypothetical protein PRABACTJOHN_02499 [Parabacteroides johnsonii
DSM 18315]
Length = 729
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 4 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 63
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ SG+ +LLY
Sbjct: 64 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRSGRT--KLLY 120
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 121 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 176
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 177 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 234
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 235 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 294
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 350
>gi|150003035|ref|YP_001297779.1| ATP-dependent DNA helicase recQ [Bacteroides vulgatus ATCC 8482]
gi|212690531|ref|ZP_03298659.1| hypothetical protein BACDOR_00013 [Bacteroides dorei DSM 17855]
gi|237708012|ref|ZP_04538493.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 9_1_42FAA]
gi|265754201|ref|ZP_06089390.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|294775659|ref|ZP_06741167.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|319642190|ref|ZP_07996850.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 3_1_40A]
gi|345515920|ref|ZP_08795417.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|345518199|ref|ZP_08797654.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|423229918|ref|ZP_17216323.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423241571|ref|ZP_17222683.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|423247008|ref|ZP_17228059.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|423314860|ref|ZP_17292792.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149931459|gb|ABR38157.1| ATP-dependent DNA helicase recQ [Bacteroides vulgatus ATCC 8482]
gi|212666880|gb|EEB27452.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229436550|gb|EEO46627.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|229457998|gb|EEO63719.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 9_1_42FAA]
gi|254836466|gb|EET16775.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|263234910|gb|EEZ20465.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|294450503|gb|EFG18995.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|317386176|gb|EFV67095.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 3_1_40A]
gi|392632709|gb|EIY26667.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|392633769|gb|EIY27707.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392641157|gb|EIY34942.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392681042|gb|EIY74404.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 726
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/356 (43%), Positives = 224/356 (62%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ E L L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MTENINLTDALKKYFGFDTFKGNQEAIIRNLLAGNDTFVLMPTGGGKSLCYQLPSLIMDG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ SGK +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKSDILSGKT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLKGVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKV+ D+ ++L +Q+ KSSFNRPNL+YEVR K ++ D+ +KA
Sbjct: 174 VIALTATATPKVRMDIQKNLGMQDAQEFKSSFNRPNLYYEVRSK--TNNIDRDIIKFIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI+ AYHAG++ R++ D ++ V+VAT
Sbjct: 232 NPGKSGIIYCLSRKKVEELAEVLQANGINARAYHAGMDSATRTANQDGFLKEDIDVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE 347
>gi|449471881|ref|XP_004175079.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein homolog
[Taeniopygia guttata]
Length = 1069
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/364 (45%), Positives = 220/364 (60%), Gaps = 2/364 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ + FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA G+ +V+S
Sbjct: 383 MMNIFHRKFGLHCFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTIVIS 442
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV LK IA +L+ +T +KIY L P ++LLYVTPE + A+
Sbjct: 443 PLRSLIIDQVQKLKTLDIAATYLTGDRTDADASKIYMQLSKKDPVIKLLYVTPEKVCASN 502
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
MS L+ ++ R LL IDEAHC+S WGHDFR Y++L+ LR VP++ALTATA
Sbjct: 503 RLMSTLENLYDRKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRRKFGSVPMMALTATAN 562
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQKD++ L + P V SFNR NL Y+V K A L + K + I+Y
Sbjct: 563 PRVQKDILNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVALDCLEWIKKYHPHDSGIIY 622
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGID 323
CL R CD +A L G++ AYHAGL D R V W++ QV+ AT+AFGMGID
Sbjct: 623 CLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQQKWVNQEGCQVICATIAFGMGID 682
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ + NS
Sbjct: 683 KPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSH 742
Query: 384 SFST 387
+ T
Sbjct: 743 TRQT 746
>gi|423343078|ref|ZP_17320792.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
gi|409216754|gb|EKN09737.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
Length = 726
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ SG+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRSGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 347
>gi|333029342|ref|ZP_08457403.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
gi|332739939|gb|EGJ70421.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
Length = 727
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/346 (44%), Positives = 222/346 (64%), Gaps = 13/346 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P++ G +VVSPLIA
Sbjct: 11 LKEYFGFDKFKGNQEAIIKNLLAGNDTFVLMPTGGGKSLCYQLPSILLEGTAIVVSPLIA 70
Query: 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +++ ++ EDL SGK +LLYV PE
Sbjct: 71 LMKNQVDAMRSFSEIDGVAHYINSSLNKSEIE-QVKEDLVSGKT--KLLYVAPESLTKED 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LK I ++ A+DEAHCIS WGHDFRP YR++ + + + P++ALTATA P
Sbjct: 128 NVDFLKSIK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIIDEIGKAPLIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNL+YEV+ K D D+ +K N + I+YC
Sbjct: 184 KVQHDIQKNLGIVDAKVFKSSFNRPNLYYEVKAK--TKDVDKDVILFIKNNPNKSGIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ L A GI+ +YHAG++ R+ DD++ R V+VAT+AFGMGID+
Sbjct: 242 LSRKKVEELTKILQANGINARSYHAGMDAATRNQNQDDFLMERVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H+++PKS+E +YQE+GRAGRD K + +Y D +++E
Sbjct: 302 DVRFVLHYDMPKSLEGYYQETGRAGRDGGEGKCVTFYSNKDLQKLE 347
>gi|442772186|gb|AGC72851.1| ATP-dependent DNA helicase RecQ [uncultured bacterium A1Q1_fos_97]
Length = 607
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 227/363 (62%), Gaps = 11/363 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q D I+A+ SG+D LMPTGGGKS+C+QIPA+ PG +VVSPLI+
Sbjct: 10 LKRYFGYDQFRPLQADIIRAIFSGKDALVLMPTGGGKSVCFQIPAVTLPGTCIVVSPLIS 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL+ GIA F++S + + ++ E +G+ L LLYV+PE + F+S
Sbjct: 70 LMKDQVEGLRANGIAAAFINSAIDSREQLRVEESFYAGE--LDLLYVSPEKLVSGNFVSI 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK RG +NL AIDEAHCIS+WGHDFRP Y ++ L+ + P VP++ALTATA +K
Sbjct: 128 LK----RGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPRVPVVALTATADKLTRK 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L+ P + +SF+RPNL EVR D ++ + I+Y L R
Sbjct: 184 DIVDQLKLEEPGIFIASFDRPNLSLEVRPGQQRLQQIEDF---IRKHPKQAGIIYTLSRK 240
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
++++ L G AYHAGL+ RS + D +I+ ++ ATVAFGMGID+ +VR
Sbjct: 241 ATEDIADKLKQKGFKAEAYHAGLSPDRRSKIQDHFINDNLHIICATVAFGMGIDKSNVRW 300
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL--SKNQSKNSQSFST 387
V H+N+PK++E +YQE GRAGRD + +LL+Y D + I+ +N ++N
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLVK 360
Query: 388 RER 390
ER
Sbjct: 361 LER 363
>gi|410619883|ref|ZP_11330774.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
gi|410160661|dbj|GAC34912.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
Length = 623
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 212/342 (61%), Gaps = 10/342 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ +FRD Q + I+ +L G+D LMPTGGGKS+CYQIPAL G+ +VVSPLI
Sbjct: 36 VLKTVFGYDEFRDGQQEVIEQILHGQDVLVLMPTGGGKSLCYQIPALVLGGLTIVVSPLI 95
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L G++ +++S + + +Y + G+ +L+YV PE FM
Sbjct: 96 ALMKDQVDALVASGVSAAYINSNLSSEEMLNVYRGMQDGR--YKLIYVAPERLMQFDFMQ 153
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L ++ + L A+DEAHC+S WGHDFR YR+L L+ P VP++ LTATA +
Sbjct: 154 RLHSLN----IALFAVDEAHCVSHWGHDFRKEYRQLGQLKQQFPAVPVIGLTATADITTR 209
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+++ L LQ P V K SF+RPN +RY L D D I+YC R
Sbjct: 210 SDILQQLALQEPFVFKGSFDRPN----IRYNQLFKYKATDQVIQYVKQQDGSGIIYCNSR 265
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+LS L+ GI+CA YHAGL R + D+I ++VATVAFGMGI++ +VR
Sbjct: 266 KKVDDLSMALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINKSNVR 325
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V HF++P+S+EA+YQE+GRAGRD +P+++LL + D R+
Sbjct: 326 FVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARI 367
>gi|147783250|emb|CAN73069.1| hypothetical protein VITISV_005845 [Vitis vinifera]
Length = 1640
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 160/364 (43%), Positives = 222/364 (60%), Gaps = 22/364 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA +PG+ +VV PL++L+++
Sbjct: 315 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 374
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L GI FLSS QT + ++L KPS +LLYVTPE + F LK
Sbjct: 375 QIITLNLNFGIPATFLSSQQTASQAAAVLKELRKDKPSCKLLYVTPERIAGNSTFFEILK 434
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR+L L+ PDVP++ALTATA V+KD+
Sbjct: 435 SLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPVRKDI 494
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ SL + + LVL++SF+R NL YEV K LL D + +L C I
Sbjct: 495 LNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLKDRFKNL----------CGI 544
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL ++ C E+S +L+ I YHAGL+ + R V W + + ++ AT+AFGMG
Sbjct: 545 VYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMG 604
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V H + KS+E +YQESGRAGRD LP+ + Y D R+ +L
Sbjct: 605 INKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALYQKKDFSRVVCMLRNGHGCK 664
Query: 382 SQSF 385
S++F
Sbjct: 665 SETF 668
>gi|403216335|emb|CCK70832.1| hypothetical protein KNAG_0F01640 [Kazachstania naganishii CBS 8797]
Length = 1373
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 265/477 (55%), Gaps = 51/477 (10%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR Q +AI A L G+D F LMPTGGGKS+CYQ+PA+ + G +V+SPLI+LM++Q
Sbjct: 622 FRSNQEEAINATLEGKDVFVLMPTGGGKSLCYQLPAVVRSGKTRGTTIVISPLISLMQDQ 681
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L + I SS T + + + + G L L+Y++PE+ +A+ ++K+
Sbjct: 682 VEHLLARNIKACMFSSRGTAEERRQTFNLFIHG--LLDLIYISPEMISASEQCKKAIRKL 739
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H G L V IDEAHC+S+WGHDFRP Y++L + PD+P++ALTATA+ +V+ D++
Sbjct: 740 HEDGNLARVVIDEAHCVSNWGHDFRPDYKELKIFKREFPDIPMMALTATASEQVRMDIIH 799
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCD 272
+L L+NP+ LK SFNR NLFYEV+ K + ++C +K + I+YC + +C+
Sbjct: 800 NLELKNPVFLKQSFNRTNLFYEVKKKS--KNTIYEICDEIKRKFRNQTGIIYCHSKNSCE 857
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ + L I CA YHAGL + R + W + QV+ ATVAFGMGID+ DVR V H
Sbjct: 858 QTATQLQRNRIKCAYYHAGLEPEERFKIQKSWQTDEIQVICATVAFGMGIDKPDVRFVYH 917
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
F IP+++E +YQE+GRAGRD S Y+ D R M+ ++ K+++ + + +
Sbjct: 918 FTIPRTLEGYYQETGRAGRDGKYSYCTTYFSFRDIRNMQTMIQKDENLDRE-------NK 970
Query: 393 KKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCK 452
+K ++ QVL Y D LVL Y++ + +LC
Sbjct: 971 EKHLAKLQQVLG-------------YCDNM----TDCRRKLVLSYFN----EDFDAALCH 1009
Query: 453 NSCDACKHP----------NLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSE 499
+CD CK+ +++++GEL ++ N I QD+ G + S+
Sbjct: 1010 KNCDNCKNRQSSQTEERDMTEISRHIGELMESL---NGSRVTLIQCQDIFKGSRSSK 1063
>gi|156359349|ref|XP_001624732.1| predicted protein [Nematostella vectensis]
gi|156211530|gb|EDO32632.1| predicted protein [Nematostella vectensis]
Length = 582
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/329 (47%), Positives = 217/329 (65%), Gaps = 6/329 (1%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98
FR QL+ I A +SG DC +MPTGGGKS+C+Q+PA+ G+ LVVSPL++LME+Q+ L
Sbjct: 90 FRHLQLECINATMSGVDCILIMPTGGGKSLCFQLPAVVSKGLTLVVSPLVSLMEDQLWAL 149
Query: 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRG 157
K GI L+++ T + ++ + K L++LYVTPE A + FM+KL+K + G
Sbjct: 150 KRLGIKAALLNASSTREEVNSVHASIVDKKSDLKMLYVTPEKIAKSKRFMAKLEKSYESG 209
Query: 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 217
LL+ + IDE HC S WGHDFRP Y+ L L+ P VPIL LTATA KV +DV + L L
Sbjct: 210 LLSRIVIDEVHCTSQWGHDFRPDYKILGILKRQYPGVPILGLTATATTKVIEDVKKILGL 269
Query: 218 Q-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL---KANGDTCAIVYCLERTTCDE 273
N L+LK+SFNRPNLFYEV+ K + A+ L + +GD+ I+YC R ++
Sbjct: 270 HANCLLLKASFNRPNLFYEVQSKPTTNSAFMSTIHQLITKRFSGDS-GIIYCFSRKDAEQ 328
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ +S+ GI A YHA + ++RS V W +++ QVVVATVAFGMGID+ +VR V H
Sbjct: 329 VAIEMSSRGIKAACYHADMPPESRSQVHMAWTTNKLQVVVATVAFGMGIDKSNVRFVIHH 388
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+ KSME +YQESGRAGRD+ + +++Y
Sbjct: 389 SFSKSMENYYQESGRAGRDEKRASCIVFY 417
>gi|436833691|ref|YP_007318907.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384065104|emb|CCG98314.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 742
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 224/353 (63%), Gaps = 15/353 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ FG +QFR Q I +L+G++ F +MPTG GKS+CYQ+PA+A G +V+
Sbjct: 11 TLKERLKEIFGFSQFRGDQETIIHNILAGKNTFVIMPTGAGKSLCYQLPAIASEGTAIVI 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM+NQV L GI +FL+ST + TK+ +D +G +L+LLY+ PE
Sbjct: 71 SPLIALMKNQVDQLNAFGINAQFLNSTLSKTEMTKVKKDTLNG--TLKLLYIAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD------VPILA 198
+ LKK +++ VAIDEAHCIS WGHDFRP YRK+ + + + +P++A
Sbjct: 129 ENLDFLKK----AVISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGHHSGRMGLPVIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ ++L +++ V K+SFNR NL+YE++ K DA L +K N
Sbjct: 185 LTATATPKVQQDIQKNLNMEDADVFKTSFNRKNLYYEIKPKV---DAKKALIKYVKHNKG 241
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R T ++++ L + YHAGL+ + R + D +++ VV AT+AF
Sbjct: 242 KSGIVYCLSRKTAEDIAELLRVNDVRALPYHAGLDPQTRIANQDAFLNEEVDVVCATIAF 301
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H++ PKS+E +YQE+GRAGRD L +++Y DD ++E
Sbjct: 302 GMGIDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCIMFYSYDDIVKLE 354
>gi|282896865|ref|ZP_06304871.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
gi|281198274|gb|EFA73164.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
Length = 719
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/383 (42%), Positives = 239/383 (62%), Gaps = 18/383 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 6 LEKELKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ + SS T QV+++ E + +GK ++LLYV PE +
Sbjct: 66 PLIALMQDQVEALRNNNISATLINSSLTTYQVRSR-EEAIMNGK--VKLLYVAPERLVSE 122
Query: 145 GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L + + GL N V IDEAHC+S WGHDFRP YR+L LR VP +ALTATA
Sbjct: 123 RFLPILDVVKEKFGLANFV-IDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ ++Y ++ ++K N + I+
Sbjct: 182 TDRVRADIIQQLGLKQPAVHIASFNRQNLYYEVRPKN--RNSYGEILEIIKKN-EGSGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L I+ YHAGL D+ R+ +I +++VAT+AFGMGI+
Sbjct: 239 YCLTRKNVDELTLKLQNSQIAALPYHAGLVDQERAKNQTRFIRDDVRIMVATIAFGMGIN 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD PS+ L++ D + +E+ + K Q
Sbjct: 299 KPDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFSDVKTIEWSIGKKTDPQEQ 358
Query: 384 SFSTRERSSKKSISDFSQVLDVA 406
+ ++ QV+D A
Sbjct: 359 LIAKQQ---------LRQVIDYA 372
>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 599
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 236/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQFVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN P+VP++ALTATA P
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADPT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L ++ IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKLISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQ 401
++ ++I DF++
Sbjct: 355 I---KQHKLQAIGDFAE 368
>gi|160940923|ref|ZP_02088263.1| hypothetical protein CLOBOL_05815 [Clostridium bolteae ATCC
BAA-613]
gi|158436167|gb|EDP13934.1| hypothetical protein CLOBOL_05815 [Clostridium bolteae ATCC
BAA-613]
Length = 822
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 229/363 (63%), Gaps = 8/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q IQ++L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 6 EILKHYFGYDTFRDGQDVLIQSILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +++S+ T K+ + +G+ ++YV PE + F+
Sbjct: 66 ISLMKDQVSNLNQVGILAAYINSSLTAAQYYKVLDLARAGR--YPIIYVAPERLMSEDFL 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ S+ +++VA+DEAHC+S WG DFRPSY K+ N LP+ P++ A TATA +
Sbjct: 124 RF--ALSSQVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPERPVVSAFTATATAE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + FNRPNL++ V+ D YA + + L+ + I+YCL
Sbjct: 182 VRDDIIDILMLRNPQVMTTGFNRPNLYFGVQSPK---DKYATMVNYLERHKGESGIIYCL 238
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ L G S YHAGL+D R +D+I R Q++VAT AFGMGID+ +
Sbjct: 239 TRKVVEEVCGQLIREGFSVTRYHAGLSDSERRHNQEDFIYDRAQIMVATNAFGMGIDKSN 298
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 299 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPI 358
Query: 387 TRE 389
TRE
Sbjct: 359 TRE 361
>gi|410995826|gb|AFV97291.1| hypothetical protein B649_04885 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 602
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/419 (41%), Positives = 251/419 (59%), Gaps = 24/419 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG + FR+ Q DA+ A+LS RD L+PTGGGKS+CYQ+P L GI +VVSPL
Sbjct: 10 KVLKHTFGFSSFREMQEDAVDAILSRRDLAMLLPTGGGKSLCYQLPTLLMDGITIVVSPL 69
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM +QVI LKE GI E +SS+Q+ Q + + + +G L+LLY+ PE A F+
Sbjct: 70 IALMHDQVIALKELGIEAEMISSSQSPQEQQEAFSKAKNG--VLKLLYIAPERLANVSFL 127
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S L+ + +N IDEAHCIS WGH+FR YR+L LR+ P PI A TATA PKV
Sbjct: 128 SWLETLD----INFFVIDEAHCISEWGHEFRDDYRRLGELRSAFPHTPIAAFTATATPKV 183
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ L L +PL+L++ R N+ VR +D +L ++LK + IVY
Sbjct: 184 REDILSQLGLNDPLILRAPVLRKNIKITVRERD--GGWRNELMNILKEHEGESGIVYAFS 241
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +EL+ +LS GI C AYHAG++ R +++ Q++VATVAFGMGID+ D+
Sbjct: 242 RKETEELAEFLSKKGIKCLAYHAGMSGSIRHDTHTSFLNDETQIIVATVAFGMGIDKGDI 301
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY-GMD--DRRRM----------EFIL 374
R V H ++PK++E +YQE GRAGRD + S+++L+Y G D +++R+ E IL
Sbjct: 302 RFVIHTSLPKTIENYYQEIGRAGRDGIDSEAILFYSGTDFYNKKRLIDEGSDPQYREMIL 361
Query: 375 SKNQSKNSQSFSTRERSSKKSISD-FSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLS 432
SK ++ S ++T E + I+ FS + G + +G+ P FLS
Sbjct: 362 SKLRA--SMDYATAEECRHRLIASYFSDTIAPCGDKCDNCVGSDIQKQEITTPAQKFLS 418
>gi|296115204|ref|ZP_06833845.1| putative ATP-dependent DNA helicase recQ [Gluconacetobacter
hansenii ATCC 23769]
gi|295978305|gb|EFG85042.1| putative ATP-dependent DNA helicase recQ [Gluconacetobacter
hansenii ATCC 23769]
Length = 623
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 221/350 (63%), Gaps = 9/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++G+DC LMPTGGGKS+CYQ+PAL++PG LV+SPLIALM++
Sbjct: 28 FGFPDFRGLQQQAVDQVMAGQDCLVLMPTGGGKSVCYQVPALSRPGTGLVISPLIALMDD 87
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL SG+ L +LYV+PE +PG + +L
Sbjct: 88 QVAALRQLGVNAGALHSEQEADDAARVRSDLASGR--LDILYVSPERLLSPGMLERL--- 142
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
SR L+++AIDEAHCIS+WGH+FRP YR L++L ++ P VP +ALTATA P+ Q D++E
Sbjct: 143 -SRLTLSVIAIDEAHCISAWGHEFRPEYRALATLPDHFPGVPRIALTATADPRTQSDILE 201
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L +L + IVYC R +
Sbjct: 202 ALAMPDATVLKASFHRPNLDVVVRPK---TSELRQLVGILDRHKGEAGIVYCGSRNKTER 258
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L G A+HAGL+ + + L + S ++VAT+AFGMGIDR DVR V H
Sbjct: 259 IAKSLCDRGYVALAFHAGLSPVEKRAALMRFRSGEAVIIVATIAFGMGIDRPDVRTVVHL 318
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q
Sbjct: 319 DMPSSPEGYYQQIGRAGRDGEAAETVLLYGGDDIARARYWLEQSNAPEAQ 368
>gi|146298045|ref|YP_001192636.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146152463|gb|ABQ03317.1| ATP-dependent DNA helicase, RecQ family [Flavobacterium johnsoniae
UW101]
Length = 731
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 221/352 (62%), Gaps = 13/352 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L + F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILGKTNTFVIMPTGGGKSLCYQLPALIQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDISSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRTIIKQLGKVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTK--TKSIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMS 352
>gi|223558023|gb|ACM91029.1| ATP-dependent DNA helicase RecQ [uncultured bacterium URE4]
Length = 731
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 219/347 (63%), Gaps = 15/347 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG F+ Q I+ ++ G + F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 12 LKHFFGFDAFKGDQERIIRHLVDGGNAFVLMPTGGGKSLCYQLPALVMEGTAIVISPLIA 71
Query: 90 LMENQVIGLKE-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
LM+NQV ++ GIA FL+S+ + ++ EDL SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGFVESGDGIA-HFLNSSLSRTQVAEVREDLLSG--VTKLLYVAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK+IH ++ A+DEAHCIS WGHDFRP YRK+ S+ + P++ALTATA
Sbjct: 129 ENIALLKEIH----ISFYAVDEAHCISEWGHDFRPEYRKIRSIIEDIQPAPVIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D++++L + + V KSSFNRPNL+YEVR K D D+ ++ N I+Y
Sbjct: 185 PKVQSDILKNLRISDATVFKSSFNRPNLYYEVRDKV---DTEKDIIRFIRQNPGKSGIIY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ LS GI YHAGL+ K R+ D ++ QV+VAT+AFGMGID+
Sbjct: 242 CLSRKKVEELAQLLSINGIQALPYHAGLDAKTRAENQDRFLMEDIQVIVATIAFGMGIDK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H++IPKS+E +YQE+GRAGRD + YY D +++E
Sbjct: 302 PDVRFVIHYDIPKSIEGYYQETGRAGRDGQEGLCITYYSYKDIQKLE 348
>gi|449548620|gb|EMD39586.1| hypothetical protein CERSUDRAFT_111898 [Ceriporiopsis subvermispora
B]
Length = 877
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 177/459 (38%), Positives = 254/459 (55%), Gaps = 37/459 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALME 92
FGH +++ KQ ++A + G D F L PTG GKS+C+Q+PA+A+ G+ +VVSPL+ALM+
Sbjct: 62 FGHKEYKGKQKQIVEAAVQGADIFVLAPTGMGKSICFQVPAIAEQHGVTVVVSPLLALMK 121
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
NQV L+ + L+S + + K +I DL SG P +RLLYV+PE TP +
Sbjct: 122 NQVAKLRRLHVPVVALTSETSHEEKQEIMRDLSSGSPEIRLLYVSPEKFCTPELKRLFET 181
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ ++G LN + +DEAHCIS WGHDFR YR+L S R+ P +PI+ALTATA P VQ D++
Sbjct: 182 LSTQGELNRLVVDEAHCISEWGHDFRAEYRRLGSFRDRYPTIPIMALTATATPIVQDDIV 241
Query: 213 ESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYAD---------LCSVLKANG-DTC 260
SL + +LK FNR NLFYEV+Y L +Y D + + + G +
Sbjct: 242 RSLKMAEDHMLKVVHPFNRSNLFYEVQY---LASSYQDAHMSEIHKYISRLHERRGRPSS 298
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW-ISSRKQ----VVVAT 315
I+YC R TCDELS +L G++ YH G+ L DW I + VV AT
Sbjct: 299 GIIYCRTRKTCDELSQFLRGKGLNARPYHRGIPPATLDRTLADWEIGGSDEGGVDVVCAT 358
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
VAFGMGID+ DVR + H+++PKS E +YQE+GRAGRD PSK +L+Y +D R+ ++S
Sbjct: 359 VAFGMGIDKADVRYIIHYDLPKSFEGYYQETGRAGRDGSPSKCILFYSREDVVRVRKLVS 418
Query: 376 KNQSKNSQSFST--RERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSL 433
++ T S++++ + +++ A V R+ V +F +
Sbjct: 419 GAHARRVVQVDTFGGPVPSQRAVDSLTALINYA----ENVHTCRH-----VTICRYFGEI 469
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT 472
+ I C CD CK+P G LT
Sbjct: 470 IDTEDP-----DIAARYCHGMCDVCKYPEKTKGRKGRLT 503
>gi|392553532|ref|ZP_10300669.1| ATP-dependent DNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 607
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 231/359 (64%), Gaps = 13/359 (3%)
Query: 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA 74
Q +P+ +++ +L FG+ QFR Q I AVL+G+DC LMPTGGGKS+CYQ+PA
Sbjct: 5 QATQPVMQQQTPHSVLSSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCYQVPA 64
Query: 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
L PGI +VVSPLI+LM++QV LK +G+A +++++Q+ + + IY+ L G+ +++L
Sbjct: 65 LLLPGITIVVSPLISLMQDQVAQLKAQGVAAAYINNSQSREEQQLIYQGLHQGQ--IKIL 122
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
YV PE T F ++L+ ++ + L AIDEAHC+S WGHDFRP Y +L L+ +
Sbjct: 123 YVAPERLLTDDFSTRLQHLN----IGLFAIDEAHCVSHWGHDFRPHYYRLGQLKQRFSHI 178
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSV 252
PI+ALTATA + D++ L L N + SF+RPN+ Y E ++K L + L
Sbjct: 179 PIMALTATADIATRNDIVMQLGLTNAHIYTGSFDRPNIRYTIEEKFKPL-----SQLMRF 233
Query: 253 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
LK I+YC R D+++ L G + A+YHAGL ++ RS V + + +V
Sbjct: 234 LKEQKGQSGIIYCSSRKRVDDIAEKLVDAGYNAASYHAGLENEQRSFVQNAFARDDIHIV 293
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VATVAFGMGI++ +VR V H++IPK++E++YQE+GRAGRD L +++++Y+ D R++
Sbjct: 294 VATVAFGMGINKPNVRFVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFDPADVPRVK 352
>gi|322708811|gb|EFZ00388.1| QDE3 protein [Metarhizium anisopliae ARSEF 23]
Length = 1697
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 221/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K+L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ + G + +V
Sbjct: 827 KMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAIVRTGKTRGVTIV 886
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K +I D P + LLYVTPE+
Sbjct: 887 VSPLLSLMQDQVDHMKGLGIQAVAFNGGCSAEYKRQIMSTFDEPSPEHFIELLYVTPEMV 946
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ ++ RG + IDEAHC+S WGHDFRP Y+ + +R P VP +ALT
Sbjct: 947 SMNSAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKTIGQVRMRFPRVPFMALT 1006
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N V SFNRPNL+YEVR K +A + S++ A +T
Sbjct: 1007 ATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTKKSHANATESIASLINAKYHNT 1066
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY L R +E++ L+ GI+ YHA ++ +A+ V W +VVVAT+AFG
Sbjct: 1067 TGIVYTLSRKQAEEVAQTLAGYGIAARHYHAAIDPQAKVDVQRSWQKGDIKVVVATIAFG 1126
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1127 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKADIRVLKKMIADGDG 1186
Query: 380 KNSQ 383
N+Q
Sbjct: 1187 NNAQ 1190
>gi|90407207|ref|ZP_01215394.1| putative ATP-dependent DNA helicase RecQ [Psychromonas sp. CNPT3]
gi|90311630|gb|EAS39728.1| putative ATP-dependent DNA helicase RecQ [Psychromonas sp. CNPT3]
Length = 602
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 225/352 (63%), Gaps = 13/352 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I+ + +G+D +MPTGGGKS+C+QIPAL +PGI +V+SPLI+LM++
Sbjct: 17 FGYKSFRAGQKEVIEQLCAGKDALVVMPTGGGKSLCFQIPALIQPGICIVISPLISLMKD 76
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A +L+S+ + + +I D+ GK L+LLY+ PE FM +LK +
Sbjct: 77 QVDTLQTCGVAAAYLNSSLSYPQQNQILNDMHQGK--LKLLYIAPERLLRHDFMQRLKTL 134
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+NL AIDEAHCIS WGHDFRP Y L L+ + P VP++ALTATA QKD++
Sbjct: 135 ----TINLFAIDEAHCISQWGHDFRPEYALLGQLKIHFPQVPLVALTATADHATQKDILA 190
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L +PL+ SF+RPN+ Y + +Y+ L+ L + L + I+YC R
Sbjct: 191 RLQFNDPLLSIHSFDRPNIEYLLIEKYRPLIQ-----LFNYLAEHQHESGIIYCTSRRRT 245
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E++ L G++ YHAGL R V D +I +VVATVAFGMGID+ +VR V
Sbjct: 246 EEIAQKLQGKGLNARCYHAGLELSERQLVQDKFIKDEVDIVVATVAFGMGIDKPNVRFVV 305
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
H+ IPK++E++YQE+GRAGRD LP++++L+Y D R+ +L KN+++ +
Sbjct: 306 HYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADPARVRAMLEKNENEEQR 357
>gi|429724940|ref|ZP_19259801.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
gi|429151402|gb|EKX94270.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
Length = 728
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 221/349 (63%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG FR+ Q I+++++G D F LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 7 LLEPLKLYFGFETFRNNQEAIIRSLMAGHDVFVLMPTGGGKSICYQLPALLMEGVAIVVS 66
Query: 86 PLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV +++ ++ + T I D+ +GK +LLYV+PEL
Sbjct: 67 PLIALMKNQVDAVRQTRADNSVAHYIYAALTKHEILDIMNDVTTGK--TKLLYVSPELFN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ LK + ++ +A+DEAHCIS WGHDFRP YRKL + N + VPI+ALTAT
Sbjct: 125 KDSFVDFLKTVR----VSFIAVDEAHCISEWGHDFRPEYRKLRPIINEIGQVPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ ++L + L KSSFNRPNL+YEVR K D D+ +K + I
Sbjct: 181 ATDKVRMDIKKNLGIPEALEFKSSFNRPNLYYEVRQKTAKVDY--DVIRFIKNHPHVSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L I+ AYHAGL+ + RS+ D ++ V+VAT+AFGMGI
Sbjct: 239 IYCLSRKRVEELTEVLRTNDINACAYHAGLDAQVRSNTQDAFLKEDIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYSHKDLQKLE 347
>gi|150008998|ref|YP_001303741.1| ATP-dependent DNA helicase recQ [Parabacteroides distasonis ATCC
8503]
gi|255014829|ref|ZP_05286955.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_1_7]
gi|256841001|ref|ZP_05546508.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|262383888|ref|ZP_06077024.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
gi|298375770|ref|ZP_06985726.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
gi|301312048|ref|ZP_07217970.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|410102762|ref|ZP_11297687.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
gi|423330257|ref|ZP_17308041.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
gi|423339397|ref|ZP_17317138.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
gi|149937422|gb|ABR44119.1| ATP-dependent DNA helicase recQ [Parabacteroides distasonis ATCC
8503]
gi|256736844|gb|EEU50171.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|262294786|gb|EEY82718.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
gi|298266807|gb|EFI08464.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
gi|300830150|gb|EFK60798.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|409230778|gb|EKN23639.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
gi|409231873|gb|EKN24721.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
gi|409237889|gb|EKN30684.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
Length = 726
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 225/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L HFG F+ Q I+ VL+G+D F LMPTGGGKS+CYQ+P++ G
Sbjct: 1 MAKKDHLTEELNRHFGFGTFKGNQKAIIENVLAGKDTFVLMPTGGGKSLCYQLPSILMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ SG+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKSDILSGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L+++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLRQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YEVR K D ++ +KA
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDATVFKSSFNRSNLYYEVRPKGTNIDR--EIIKYIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N IVYCL R +E + L A GI YHAG++ + RS+ D ++ + V+VAT
Sbjct: 232 NEGKSGIVYCLSRKKVEEFADILKANGIKALPYHAGMDSQVRSANQDAFLMEQADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 347
>gi|409202724|ref|ZP_11230927.1| ATP-dependent DNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 607
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 236/368 (64%), Gaps = 20/368 (5%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+++ +++K + FG++ FRD QLD IQ+ L+G+D L+PTGGGKS+CYQ+PA+
Sbjct: 11 PINDPHSVLKDV---FGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFA 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLI+LM++QV LK +GIA E+++++ + + Y+ L G+ L+LLYV P
Sbjct: 68 GVTIVISPLISLMQDQVAQLKAQGIAAEYINNSVAWEQQRDTYDALFQGR--LKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ ++ + ++L AIDEAHC+S WGHDFRP Y +L LR + P VP++A
Sbjct: 126 EKALQRDFIERISNCN----ISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN 256
LTATA +KD+++ L +Q P + SF+RPN+ Y E ++K L + L LK
Sbjct: 182 LTATADLATRKDIVQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPL-----SQLIRYLKEQ 236
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R D+++ L G + A YHAGL++ R V + + Q+VVATV
Sbjct: 237 KGQSGIIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATV 296
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEF 372
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D RR E
Sbjct: 297 AFGMGINKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFED 356
Query: 373 ILSKNQSK 380
I + + K
Sbjct: 357 IPDEQRRK 364
>gi|126179265|ref|YP_001047230.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862059|gb|ABN57248.1| ATP-dependent DNA helicase, RecQ family [Methanoculleus marisnigri
JR1]
Length = 419
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 231/389 (59%), Gaps = 10/389 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FGH+ F Q + I+ +L+GRD ++ TGGGKS+CYQ+PAL G+VLV+SPLI
Sbjct: 7 ILQRYFGHSAFNLYQREIIEDLLAGRDVLAVLATGGGKSLCYQVPALVGDGVVLVISPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ +G+ E L+S+ + +I +L G +++LYV+PE F+
Sbjct: 67 ALMKDQVDDLQARGVGAEALNSSGSYAATRRILSELKEGL--IQILYVSPEKAVGEDFID 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + + L+A+DEAHCIS WGH FRP YR LS L+ P VP++ALTATA P V+
Sbjct: 125 LMASLP----VTLIAVDEAHCISMWGHQFRPEYRSLSVLKERFPGVPMVALTATATPDVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L +P V SFNR NL Y V K+ +DAY L + L+ IVY R
Sbjct: 181 DDIARQLNLSDPSVYVGSFNRENLRYVVVGKE--EDAYERLRAYLRGRRGDAGIVYVATR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ L+A L AGGI YHAG+ AR D +I + VV AT AFGMGID+ DVR
Sbjct: 239 DGAETLAARLRAGGIPALPYHAGMTAAARRETQDRFIGGKVPVVCATSAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++EA+YQESGRAGRD S +LYY +D RR+ + ++ + Q
Sbjct: 299 FVVHYDMPKTLEAYYQESGRAGRDGKESDCILYYSDEDARRLRSFIDRDLASEFQRKVA- 357
Query: 389 ERSSKKSISDFSQVLDVAGKRFSRVLGNR 417
RS +S+ D+ + K G R
Sbjct: 358 -RSKLQSMVDYCTTTECRRKALLGYFGER 385
>gi|365119359|ref|ZP_09337481.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
gi|363648680|gb|EHL87834.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
Length = 709
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 218/342 (63%), Gaps = 11/342 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ ++G+ FR +Q + I ++SGRDC LMPTGGGKS+CYQIPA+ K G +VVSP
Sbjct: 9 LQILKKYYGYDTFRLQQAEIIDTIISGRDCLVLMPTGGGKSLCYQIPAIIKGGTTVVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
L+ALM++QV L GI L+S Q T VK KI + + LRLLY++PE
Sbjct: 69 LLALMKDQVDTLDSNGIPAAMLNSLQNETETVKVKI----AARRGDLRLLYISPE----- 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
M ++ + ++L AIDEAHCIS WGHDFRP Y +LS L+ Y P VP++ALTATA
Sbjct: 120 RLMGEIDGLLREMNISLFAIDEAHCISQWGHDFRPEYNRLSVLKKYFPKVPLMALTATAD 179
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L + NP V SSF+RPNL VR + + S ++ + I+Y
Sbjct: 180 KLTREDIVTQLAMDNPQVFISSFDRPNLTLSVRKNLNKKQKLSAILSFIEQHPRQSGIIY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R + + L LS GIS AYHAGL+ + R + +++ R Q++ AT+AFGMGID+
Sbjct: 240 CMSRNSTEILVRELSQYGISVTAYHAGLSSRERETAQQAFLNDRVQIICATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PKS+E +YQE GRAGRD + +LL+Y + D
Sbjct: 300 SNVRWVIHYNMPKSIECYYQEIGRAGRDGMKGDTLLFYSLGD 341
>gi|317504966|ref|ZP_07962914.1| ATP-dependent helicase RecQ [Prevotella salivae DSM 15606]
gi|315663848|gb|EFV03567.1| ATP-dependent helicase RecQ [Prevotella salivae DSM 15606]
Length = 725
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 217/349 (62%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG +F+ Q I +++ G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LLQQLKHYFGFDKFKGDQEAIILSLMEGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E G +L+S+ ++ +++ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGMSEDGTVAHYLNSSLNKSAIQQVMDNVRSGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
++ LK IH ++ AIDEAHCIS WGHDFRP YR + N + + P++ALTAT
Sbjct: 125 KEEYVEFLKSIH----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNR NL+YEVR K +D + ++ + I
Sbjct: 181 ATDKVRTDIKKSLGIMDAHEFKSSFNRANLYYEVRPK--TNDVDKQIIKFIRQHEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAEVLKANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYAQKDLKKLE 347
>gi|330841793|ref|XP_003292875.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
gi|325076832|gb|EGC30587.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
Length = 884
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 159/394 (40%), Positives = 238/394 (60%), Gaps = 8/394 (2%)
Query: 5 PLAMQSTSQTQKNKPL---HEKEALVKLL-RWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
P+ MQS S + L HE ++LV R FG++ FR Q I ++L GRD F +
Sbjct: 377 PIKMQSPSSNAIDGVLEKEHEWDSLVDSCNRMVFGNSSFRPLQQQVINSILHGRDTFVSL 436
Query: 61 PTGGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKT 118
PTGGGKS+C+QIP+L GI +V+SPL++LM++QV LK G+ ++S+ T +Q +
Sbjct: 437 PTGGGKSLCFQIPSLVDSSGISIVLSPLLSLMQDQVHKLKLLGVPACSINSSNTPLQNRK 496
Query: 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178
I + LD ++ ++YV+PE + F+ L ++++G + + +DEAHCIS WGHDFR
Sbjct: 497 TIEQLLDKDNCNISIVYVSPERLSQTEFLEVLNTLNNQGRIKRLIVDEAHCISEWGHDFR 556
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
P+YRK+S R P+VPI A TATA P V+ D+ L L NP+ + SSF R NL Y++R
Sbjct: 557 PAYRKISLFRENFPNVPIAAFTATAKPSVESDIKNELKLHNPVTIASSFLRTNLLYQIRS 616
Query: 239 KDL-LDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 296
K ++AD+ +K +C I+YC C+ LS YL+ I YH L +
Sbjct: 617 KSPDQSRSFADIADYIKMRQSRSCGIIYCATTNDCELLSQYLNEENIDSHFYHGSLKNSE 676
Query: 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
R + W + +++V T+AFGMGID KDVR + H+ +P S+EA+YQ++GRAGRD LPS
Sbjct: 677 RVEIQKAWTNKSFKIIVTTLAFGMGIDVKDVRFIIHYTMPSSIEAYYQQTGRAGRDGLPS 736
Query: 357 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
+ +LYY +D ++ I+ +S F + E+
Sbjct: 737 ECILYYTSNDYFKISRIIQTQAQPSSSYFYSEEQ 770
>gi|313149548|ref|ZP_07811741.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313138315|gb|EFR55675.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 734
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 15 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 74
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 75 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 131
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 132 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 187
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 188 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 245
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ D+++ + V+VAT+AFGMG
Sbjct: 246 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDNFLMEKIDVIVATIAFGMG 305
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 306 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 355
>gi|392546619|ref|ZP_10293756.1| ATP-dependent DNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 604
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 235/384 (61%), Gaps = 13/384 (3%)
Query: 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
+N H + +L+ FG++ FRD QLD IQA L GRD L+PTGGGKS+CYQ+PAL
Sbjct: 2 ENLATHSIDTPHGVLKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPAL 61
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
PG +VVSPLI+LM++QV L+ GI+ EF++++ + IY+ L G+ ++LLY
Sbjct: 62 ILPGTCVVVSPLISLMQDQVAQLQALGISAEFINNSLDRAQQQAIYQRLHQGE--IKLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE F+ +L + L L AIDEAHC+S WGHDFRP Y +L L++ VP
Sbjct: 120 VAPEKILQSEFIERLSHLQ----LGLFAIDEAHCVSHWGHDFRPHYCRLHELKHRFASVP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVL 253
++ALTATA + D++ L LQ P + SF+RPN+ Y E ++K L + L L
Sbjct: 176 MMALTATADLATRSDIVTQLGLQTPFIHTGSFDRPNIRYTIEEKFKPL-----SQLMRYL 230
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ IVYC R D+++ L G + AAYHAG++++ R V + + Q+VV
Sbjct: 231 RTQKGQSGIVYCSSRKRVDDIAEKLVEAGFNAAAYHAGMSNEQRQFVQNAFARDDIQIVV 290
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATVAFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D R++
Sbjct: 291 ATVAFGMGINKSNVRYVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRF 350
Query: 374 LSKNQSKNSQSFSTRERSSKKSIS 397
+ ++ + + SS S +
Sbjct: 351 FEDIEDEHRRRVEEQRFSSMASFA 374
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 243/400 (60%), Gaps = 7/400 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLDFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFPQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ Q + R + + D+++ + + R G +
Sbjct: 363 DVDEQRIA---RQQLRQVIDYAESTECRHRIQLRYFGEEF 399
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 243/400 (60%), Gaps = 7/400 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFPQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALKLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ Q + R + + D+++ + + R G +
Sbjct: 363 DVDEQRIA---RQQLRQVIDYAESTECRHRIQLRYFGEEF 399
>gi|392544476|ref|ZP_10291613.1| ATP-dependent DNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 607
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 236/368 (64%), Gaps = 20/368 (5%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+++ +++K + FG++ FRD QLD IQ+ L+G+D L+PTGGGKS+CYQ+PA+
Sbjct: 11 PINDPHSVLKDV---FGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFA 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLI+LM++QV LK +GIA E+++++ + + Y+ L G+ L+LLYV P
Sbjct: 68 GVTIVISPLISLMQDQVAQLKAQGIAAEYINNSVAWEQQKDTYDALFQGR--LKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ ++ + ++L AIDEAHC+S WGHDFRP Y +L LR + P VP++A
Sbjct: 126 EKALQRDFIDRISNCN----ISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN 256
LTATA +KD+++ L +Q P + SF+RPN+ Y E ++K L + L LK
Sbjct: 182 LTATADLATRKDIVQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPL-----SQLIRYLKEQ 236
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R D+++ L G + A YHAGL++ R V + + Q+VVATV
Sbjct: 237 KGQSGIIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATV 296
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEF 372
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D RR E
Sbjct: 297 AFGMGINKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFED 356
Query: 373 ILSKNQSK 380
I + + K
Sbjct: 357 IPDEQRRK 364
>gi|423280579|ref|ZP_17259491.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
gi|424665170|ref|ZP_18102206.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404575034|gb|EKA79779.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404583786|gb|EKA88459.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
Length = 726
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ D+++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDNFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 243/400 (60%), Gaps = 7/400 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFTQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALKLQHHNIQALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ Q + R + + D+++ + + R G +
Sbjct: 363 DVDEQRIA---RQQLRQVIDYAESTECRHRIQLRYFGEEF 399
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 154/339 (45%), Positives = 217/339 (64%), Gaps = 13/339 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG++ FR Q D I +V + D LMPTGGGKS+C+QIPA+ GI +V+SPLIA
Sbjct: 10 LQQYFGYSTFRPLQEDIISSVYAKNDTLVLMPTGGGKSICFQIPAITLDGICIVISPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L+ GI+ FL+S+Q M + +I ++ GK ++LLYV+PE T F
Sbjct: 70 LMKDQVNALQTNGISAAFLNSSQDMAEQREIESEVKQGK--IKLLYVSPEKLLTESFTYF 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + ++L A+DEAHCIS WGHDFRP Y +L SL++ P VP++ALTATA ++
Sbjct: 128 LQSLS----ISLFAVDEAHCISQWGHDFRPEYTQLKSLKDRFPFVPMIALTATADKITRR 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
D++ L L+NP +SFNRPNL V YK + + S + + I+YCL
Sbjct: 184 DIISQLGLENPTEFVASFNRPNLSLNVLPAYKRM-----DSIVSYILRRPNESGIIYCLS 238
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G+ YHAGLN RS V DD+I+ R ++ ATVAFGMGID+ +V
Sbjct: 239 RKNTENVAARLQKAGMKADYYHAGLNAHERSRVQDDFITDRTPIICATVAFGMGIDKPNV 298
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
R V H+NIPK++E +YQE GRAGRD L ++L+Y +D
Sbjct: 299 RWVMHYNIPKNIEGYYQEIGRAGRDGLKGDTMLFYSFND 337
>gi|270010585|gb|EFA07033.1| hypothetical protein TcasGA2_TC010005 [Tribolium castaneum]
Length = 1017
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 165/390 (42%), Positives = 230/390 (58%), Gaps = 10/390 (2%)
Query: 5 PLAMQSTSQTQKNKPLHE-------KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCF 57
P A QS T + HE E + ++L FG FR Q + I A L+ +DCF
Sbjct: 256 PEATQSGVFTGRTDDSHEFRKKYPHTEVMYEVLHQKFGLRHFRPHQEEIINASLTQQDCF 315
Query: 58 CLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
LMPTGGGKS+CYQ+PA+ PG+ +V+SPL AL+ +QV L I L S
Sbjct: 316 VLMPTGGGKSLCYQLPAVLMPGVTIVISPLRALISDQVDKLNALDIPSAHLCSDVKKADV 375
Query: 118 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176
I++ L +P L+LLY+TPE ++A+ +K +++R L IDE HC+S WGHD
Sbjct: 376 DVIFQKLHVREPILKLLYLTPEKMSASGKVTDMIKSLYARNKLARFVIDEVHCLSQWGHD 435
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y++LS+LR P+VPI+ LTATA +VQ DV L L+NP SFNRPN+ Y V
Sbjct: 436 FRPDYKQLSNLRKQYPEVPIICLTATATKQVQGDVTNILGLKNPKTFIRSFNRPNIKYRV 495
Query: 237 RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
K+ + ++ ++K I+YCL R C++L+ L GI AYHAG++D
Sbjct: 496 IPKNGIK-VVEEITKLIKQRFYRKSGIIYCLCRADCEKLAEDLCKLGIKAKAYHAGMSDS 554
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355
R +W+ + V+VAT+AFGMGID+ DVR V H ++PKS+EAFYQESGRAGRD P
Sbjct: 555 IREKQQREWMQDQFHVIVATIAFGMGIDKPDVRFVIHNSMPKSVEAFYQESGRAGRDGEP 614
Query: 356 SKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
S S L+Y D R++ ++ ++ N +
Sbjct: 615 SYSYLFYSYADAGRLKRLMQMDRGVNKNAL 644
>gi|406883341|gb|EKD30951.1| hypothetical protein ACD_77C00439G0002 [uncultured bacterium]
Length = 733
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/353 (42%), Positives = 226/353 (64%), Gaps = 15/353 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG F+ +Q + I+ ++ G D F LMPTGGGKS+CYQ+PAL PG+ ++
Sbjct: 6 EFLHTQLKEFFGFDSFKGQQEEVIKHLIDGNDSFVLMPTGGGKSLCYQLPALVMPGVAII 65
Query: 84 VSPLIALMENQVIGLK-----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+SPLIALM+NQV ++ +GIA SS Q++ ++ EDL SG+ +LLYV P
Sbjct: 66 ISPLIALMKNQVDAIRGFVEEREGIAHFLNSSLNKAQIQ-EVKEDLMSGQT--KLLYVAP 122
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E ++ LK++ ++ A+DEAHCIS WGHDFRP YR++ + + P++A
Sbjct: 123 ESLTKEENIAFLKQL----TISFYAVDEAHCISEWGHDFRPEYRRIYPIVQEIGKAPVIA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + +V K+SFNRPNL+YE+R+K + ++ +KAN
Sbjct: 179 LTATATPKVQNDIQKNLGMSDAMVFKTSFNRPNLYYEIRHKA---NTEREIIRFIKANEG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R ++++ L GI YHAGL+ R+S D ++ V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEDVAQLLVVNGIKALPYHAGLDAYTRASNQDSFLMEGVDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H++IPKS+E++YQE+GR+GRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRFVIHYDIPKSLESYYQETGRSGRDGGEGQCIAFYSYKDIQKLE 348
>gi|365990115|ref|XP_003671887.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
gi|343770661|emb|CCD26644.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
Length = 1434
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/441 (38%), Positives = 258/441 (58%), Gaps = 39/441 (8%)
Query: 27 VKL-LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIV 81
VKL LR F FR Q +A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 656 VKLKLRQIFKLPGFRPNQEEAVSATLSGKDVFILMPTGGGKSLCYQLPAVIKSGKTKGTT 715
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL- 140
+V+SPLI+LM++QV L +K I SS T++ K +++ G L ++Y++PE+
Sbjct: 716 IVISPLISLMQDQVQHLLDKNIKASMFSSRGTVEEKRQVFNLFICG--LLDVVYISPEMI 773
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+A+ +K++HS G L V +DEAHC+S+WGHDFRP Y++L + PDVP++ALT
Sbjct: 774 SASEQCKRAIKRLHSDGKLARVVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMMALT 833
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA+ +V+ D++ +L L++P+ LK SFNR NL+YEVR K+ + ++ ++K+ +
Sbjct: 834 ATASEQVRMDIIHNLELKDPVFLKQSFNRTNLYYEVRKKN--KNTIFEIADMIKSKFRNQ 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC + +C++ S + GI A YHAG+ R + W + QV+ ATVAFG
Sbjct: 892 TGIIYCHSKNSCEQTSNQMQRAGIKSAYYHAGMEPDDRLKIQKAWQADEIQVICATVAFG 951
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 952 MGIDKPDVRFVFHFTVPRTLEGYYQETGRAGRDGKYSYCITYFCFRDVRTMQTMIQKDEN 1011
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYS 439
+ + + +K ++ QV+ Y D LVL Y++
Sbjct: 1012 LDRE-------NKEKHLNKLQQVM-------------AYCDNA----TDCRRKLVLSYFN 1047
Query: 440 FHLLKQIPVSLCKNSCDACKH 460
+ LC +CD CK+
Sbjct: 1048 ----EDFDSKLCHKNCDNCKN 1064
>gi|328948910|ref|YP_004366247.1| RecQ familyATP-dependent DNA helicase [Treponema succinifaciens DSM
2489]
gi|328449234|gb|AEB14950.1| ATP-dependent DNA helicase, RecQ family [Treponema succinifaciens
DSM 2489]
Length = 520
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 222/349 (63%), Gaps = 7/349 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q IQ VL GRD +MPTGGGKS+CY+IPAL PGI +VVSPLI
Sbjct: 13 ILKSVFGYESFRPMQRKIIQNVLDGRDTLAVMPTGGGKSLCYEIPALILPGITVVVSPLI 72
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ GI+ L+S+ K E + SGK ++LLYV+PE G M
Sbjct: 73 ALMQDQVAQLESYGISAVCLNSSLERNHYQKCCEKILSGK--IKLLYVSPE-GLNSGRMI 129
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + S+ ++ +AIDEAHCIS WGHDFRP Y +++ +RN P LALTATA +VQ
Sbjct: 130 RLLQ-ESKSSVDCIAIDEAHCISEWGHDFRPDYMEITHIRNQFPKSVFLALTATATKQVQ 188
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++++L ++NP + +SFNRPN+F +V KD + + ++ + + I+YC R
Sbjct: 189 ADIIKNLRMENPEIFMASFNRPNIFLQVIKKD---KPIEQVLNFIENHPNQSGIIYCFSR 245
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D ++ L I +YHAGLND R+ D+IS + ++VATVAFGMGI++ DVR
Sbjct: 246 KQVDLVAQELHINRIKALSYHAGLNDAQRTKNQQDFISDKADIMVATVAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
V HF++PKS+E +YQE GRAGRD L S++LL Y D ++ + N
Sbjct: 306 FVIHFDMPKSIEQYYQEIGRAGRDGLESEALLLYSAGDIHKIRYFFKDN 354
>gi|421079860|ref|ZP_15540796.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
gi|401705347|gb|EJS95534.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
Length = 608
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 156/343 (45%), Positives = 228/343 (66%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLHSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 227/347 (65%), Gaps = 14/347 (4%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL ++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 REALAAQILRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + + SG+ +RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQMAVIAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
GF+ + + +L+AIDEAHCIS WGHDFRP YR+L ++ P +P++ALTA
Sbjct: 127 TNEGFLEQFTGWNP----SLIAIDEAHCISQWGHDFRPEYRELGYIKQRFPQLPVVALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L++PLV SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIIRLLGLRDPLVQISSFDRPNIRYTLVEKFKPL-----DQLWLFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R +++SA L G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLAAEAALFYDPAD 344
>gi|429753766|ref|ZP_19286544.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429171815|gb|EKY13407.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 729
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 226/361 (62%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KNDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 K 376
K
Sbjct: 355 K 355
>gi|157786722|ref|NP_001099323.1| ATP-dependent DNA helicase Q5 [Rattus norvegicus]
gi|149054808|gb|EDM06625.1| RecQ protein-like 5 (predicted) [Rattus norvegicus]
Length = 973
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 268/467 (57%), Gaps = 41/467 (8%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PA+
Sbjct: 9 PFDRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYA---DLCSV 252
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y D C
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFC-- 246
Query: 253 LKA------NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304
LKA NG + C IVYC R C++L+ LS+ G++ AYHAGL R+ V ++W
Sbjct: 247 LKALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEW 306
Query: 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 307 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 366
Query: 365 DDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPV 424
+DR ++ F++ K +K + + S K ++ F ++ F +G R+
Sbjct: 367 NDRDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALVT-----FCEEVGCRH------ 414
Query: 425 LPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ P + C CD C+ P + K L L
Sbjct: 415 -------AAIAKYFG-----DAPPA-CAKGCDCCQSPAAIRKKLDAL 448
>gi|402495443|ref|ZP_10842169.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 702
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 255/436 (58%), Gaps = 47/436 (10%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG+++FR +Q + I A+ G+D +MPTGGGKS+CYQ+PA G+ LV+S
Sbjct: 9 LYQNLKDFFGYSEFRPQQKEIISAIFKGQDNLVIMPTGGGKSICYQLPATMLSGLTLVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV GL+ GI F++S+Q + + I+ + + + +LLYV PE
Sbjct: 69 PLIALMKDQVDGLRANGIGAAFINSSQAAEEQHTIFNTILTKET--KLLYVAPE------ 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L+ I ++ L+L+AIDEAHCIS+WGHDFRP+Y +L L+N P PI+ALTATA
Sbjct: 121 SLSQLEGILNQVDLSLIAIDEAHCISAWGHDFRPAYTQLGYLKNRFPTTPIIALTATADK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ + L L N + SSF+RPNL EVR D + + + + I+YC
Sbjct: 181 ATREDISKQLNLNNATLHLSSFDRPNLSLEVRPGI---DRVKKILQFVDDHPNDSGIIYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T + L+ L + G AYHAGL R V +++I+ + Q+V ATVAFGMGID+
Sbjct: 238 LSRKTTESLAEKLESAGFKAKAYHAGLGHHIREQVQNEFINDQLQIVCATVAFGMGIDKS 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD + SK++L++ D ++ Q F
Sbjct: 298 NVRWVIHYNLPKNIEGYYQEIGRAGRDGVASKTILFHSYADVVQL------------QQF 345
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQ 445
+T +++ ++ ++ ++++ L R VLL Y +
Sbjct: 346 ATNSGNTEVQLAKLDRM-----QQYADALSCR--------------RKVLLSY----FGE 382
Query: 446 IPVSLCKNSCDACKHP 461
IP C N CD CKHP
Sbjct: 383 IPEKDCGN-CDVCKHP 397
>gi|213962479|ref|ZP_03390741.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
gi|213954805|gb|EEB66125.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
Length = 727
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 226/361 (62%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KNDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 K 376
K
Sbjct: 353 K 353
>gi|154494364|ref|ZP_02033684.1| hypothetical protein PARMER_03719 [Parabacteroides merdae ATCC
43184]
gi|154085808|gb|EDN84853.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae ATCC 43184]
Length = 729
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 4 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 63
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 64 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 120
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 121 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 176
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 177 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 234
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 235 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 294
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 350
>gi|406983517|gb|EKE04701.1| hypothetical protein ACD_20C00021G0003 [uncultured bacterium]
Length = 608
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 232/358 (64%), Gaps = 15/358 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K + +L FG+ FR++Q + I +++G D LMPTGGGKS+CYQIPAL PG
Sbjct: 5 LHQKP--LDILHSIFGYEHFRNQQAEIIDHIINGNDALILMPTGGGKSLCYQIPALCLPG 62
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLIALM++QV LK+ GI+ L+ST + + +++ E + +G+ L ++YV+PE
Sbjct: 63 VTIVVSPLIALMQDQVESLKQLGISASVLNSTLSARESSEVEEKMRNGE--LDIIYVSPE 120
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T F++ +++ L L AIDEAHC+S WGHDFRP Y + S+L+N P VP +AL
Sbjct: 121 RLNTESFLNNIEQCE----LALFAIDEAHCVSQWGHDFRPEYLEFSNLKNRFPHVPRIAL 176
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL--KANG 257
TATA ++D+++ L L+N SSF+RPN+ Y + KD + L + L + G
Sbjct: 177 TATADELTRQDIIKHLGLENGRTFISSFDRPNIRYRIMTKD---NEKKQLLNFLNEEHKG 233
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D+ IVYC+ R E++ YL G YHAGLN R D +I V+VAT+A
Sbjct: 234 DS-GIVYCISRDKVMEIAKYLKENGYDALPYHAGLNKDKRMKNQDRFIKDDGVVMVATIA 292
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFIL 374
FGMGI++ DVR V H ++PKS+E++YQE+GRAGRD LPS + + YG++D ++ +FI+
Sbjct: 293 FGMGINKPDVRFVAHLDLPKSVESYYQETGRAGRDGLPSDAWMVYGIEDIVKLQQFII 350
>gi|349687060|ref|ZP_08898202.1| ATP-dependent DNA helicase RecQ [Gluconacetobacter oboediens
174Bp2]
Length = 611
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 224/350 (64%), Gaps = 9/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSEQEADDAARVRADLMAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P+VP +ALTATA + + D+++
Sbjct: 137 ----TLSVIAIDEAHCISAWGHEFRPEYRELAALPQHFPNVPRIALTATADARTRSDILD 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L +L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVRPKT---SELRQLTGILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G + +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 IARSLAGKGYAALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGAQAETVLLYGGDDMARARYWLEQSNAPEAQ 359
>gi|94264239|ref|ZP_01288034.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
gi|93455350|gb|EAT05554.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
Length = 605
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 16/377 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ LR FG+ FR +Q + ++ +L G D F LMPTGGGKS+CYQ+PAL +PG+ +VVSPL
Sbjct: 6 RTLRDVFGYDSFRPQQQEIVERLLGGGDAFVLMPTGGGKSLCYQLPALHRPGLAVVVSPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ F +S ++ + G+ L LLYV PE F+
Sbjct: 66 ISLMKDQVDALRANGVRAAFYNSALGADEARRVLARMHDGQ--LDLLYVAPERLLHSDFL 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L ++ L L AIDEAHCIS WGHDFRP Y KL LR P VP++ALTATA P
Sbjct: 124 GRLGQLK----LALFAIDEAHCISQWGHDFRPEYTKLGLLRQNFPGVPLIALTATAEPHT 179
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ L + + +SF+RPN+ Y VR K + L + + + IVYCL
Sbjct: 180 RRDILARLQIADEAAFITSFDRPNIRYTVRDKK---RPFDQLLAFVGSRPREAGIVYCLS 236
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E++A L+A G + AYHAGL + R + D ++ ++VATVAFGMGID+ ++
Sbjct: 237 RKRVEEVTARLNAAGFAARAYHAGLGAEEREAAQDAFLRDDTLIIVATVAFGMGIDKSNI 296
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H++IPK++E +YQE+GRAGRD LP+++LL +G D +++ NSQ+
Sbjct: 297 RYVVHYDIPKNIEGYYQETGRAGRDGLPAEALLLFGFGD-----VAVARGLIDNSQNEER 351
Query: 388 RERSSKK--SISDFSQV 402
R S K ++ F+Q
Sbjct: 352 RRVESHKLNAMVGFAQA 368
>gi|297570067|ref|YP_003691411.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
gi|296925982|gb|ADH86792.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
Length = 609
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 229/371 (61%), Gaps = 16/371 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG A FR +Q + I+ +L+GRD F LMPTGGGKS+CYQ+PAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGFASFRPQQREIIEDLLAGRDAFVLMPTGGGKSLCYQLPALHRPGVAIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK +GI +S Q ++ L G+ L LLYV PE + F+ +L+++
Sbjct: 73 QVDALKAQGIKAACYNSALEAQEARQVLARLHGGE--LDLLYVAPERLMSEDFLGRLREL 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP Y +L LR P +P++ALTATA P +KD++
Sbjct: 131 Q----IALFAIDEAHCVSQWGHDFRPEYIQLGRLRQKFPGIPLIALTATAEPHTRKDIIA 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L+ +SF+RPN+ Y V K + L L + I+YCL R ++
Sbjct: 187 RLNLEKARCYLTSFDRPNIRYTVLEKK---RPFNQLLDFLDGRREEAGIIYCLSRKRVEQ 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L+A L G + A+YHAGL+ + RS V + ++ ++VATVAFGMGID+ ++R V H
Sbjct: 244 LTAKLQEAGFAAASYHAGLSGEERSRVQEAFLRDDLPLIVATVAFGMGIDKSNIRYVVHH 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PK++E +YQE+GRAGRD L S++LL +GM D L++ NSQ+ R +
Sbjct: 304 DVPKNIEGYYQETGRAGRDGLNSEALLLFGMGD-----VALARGLIDNSQNEERRRIENH 358
Query: 394 K--SISDFSQV 402
K ++ F+Q
Sbjct: 359 KLAAMVGFAQA 369
>gi|423725451|ref|ZP_17699588.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
gi|409234575|gb|EKN27403.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
Length = 726
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 347
>gi|225450636|ref|XP_002282715.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Vitis
vinifera]
Length = 602
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 161/373 (43%), Positives = 225/373 (60%), Gaps = 22/373 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA +PG+ +VV PL++L+++
Sbjct: 198 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 257
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L GI FLSS QT + ++L KPS +LLYVTPE + F LK
Sbjct: 258 QIITLNLNFGIPATFLSSQQTASQAAAVLKELRKDKPSCKLLYVTPERIAGNSTFFEILK 317
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR+L L+ PDVP++ALTATA V+KD+
Sbjct: 318 SLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPVRKDI 377
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ SL + + LVL++SF+R NL YEV K LL D + +L C I
Sbjct: 378 LNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLKDRFKNL----------CGI 427
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL ++ C E+S +L+ I YHAGL+ + R V W + + ++ AT+AFGMG
Sbjct: 428 VYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMG 487
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V H + KS+E +YQESGRAGRD LP+ + Y D R+ +L
Sbjct: 488 INKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALYQKKDFSRVVCMLRNGHGCK 547
Query: 382 SQSFSTRERSSKK 394
S++F ++K
Sbjct: 548 SETFKEAMTQARK 560
>gi|423346935|ref|ZP_17324622.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
gi|409218596|gb|EKN11564.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
Length = 726
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE 347
>gi|357441847|ref|XP_003591201.1| Bloom syndrome protein-like protein [Medicago truncatula]
gi|355480249|gb|AES61452.1| Bloom syndrome protein-like protein [Medicago truncatula]
Length = 603
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 225/366 (61%), Gaps = 8/366 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ R Q A +A L+ +D F LMPTGGGKS+CYQ+PA +PG+ +VVSPL++L+++
Sbjct: 197 FGNKSLRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQD 256
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S Q + ++L KPS +LLYVTPE + F+ LK
Sbjct: 257 QIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFVGILK 316
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L SL+ P VP++ALTATA V++D+
Sbjct: 317 CMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHPVREDI 376
Query: 212 MESLCLQNPLVLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+ +L + + +VL+ SF+RPNL YE V+ K+ L L K+ C IVYCL ++
Sbjct: 377 LNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQ---CGIVYCLSKS 433
Query: 270 TCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C ++S +L+ I A YHAGL + R +V W +V AT+AFGMGID+ DVR
Sbjct: 434 ECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKADVR 493
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H + KS+E++YQESGRAGRD LP+ + Y D R+ ++ Q +SF T
Sbjct: 494 FVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTA 553
Query: 389 ERSSKK 394
+KK
Sbjct: 554 MAQAKK 559
>gi|322699139|gb|EFY90903.1| QDE3 protein [Metarhizium acridum CQMa 102]
Length = 1698
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 221/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K+L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ + G + +V
Sbjct: 827 KMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRTGKTRGVTIV 886
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K +I + P + LLYVTPE+
Sbjct: 887 VSPLLSLMQDQVDHMKALGIQAVAFNGGCSAEYKRQIMSAFNERSPEHFIELLYVTPEMV 946
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ P F + ++ ++ RG + IDEAHC+S WGHDFRP Y+ L +R P+VPI+ALT
Sbjct: 947 SMNPAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKSLGQVRMKFPEVPIMALT 1006
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N V SFNRPNL+YEVR K +A + S++ A +
Sbjct: 1007 ATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTKTSNSNATESIASLINAKYRNI 1066
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R +E++ L+ GI+ YHA ++ + + V W +VVVAT+AFG
Sbjct: 1067 TGIVYTISRKQAEEVARKLAGHGIAARHYHAAIDPQEKVEVQTSWQKGDIKVVVATIAFG 1126
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1127 MGIDKPNVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKADIRVLKKLITDGDG 1186
Query: 380 KNSQ 383
N Q
Sbjct: 1187 NNEQ 1190
>gi|227325786|ref|ZP_03829810.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 609
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/343 (45%), Positives = 228/343 (66%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|226292234|gb|EEH47654.1| ATP-dependent DNA helicase Q1 [Paracoccidioides brasiliensis Pb18]
Length = 1550
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 221/367 (60%), Gaps = 13/367 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 692 FGLSGFRLNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 751
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 752 LMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 809
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 810 ALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 869
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 870 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 929
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 930 YCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 989
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H +PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 990 DKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEGSFE 1049
Query: 383 QSFSTRE 389
Q R+
Sbjct: 1050 QKKRQRQ 1056
>gi|302755182|ref|XP_002961015.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
gi|300171954|gb|EFJ38554.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
Length = 935
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/377 (45%), Positives = 235/377 (62%), Gaps = 26/377 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG++ FR Q + IQ +L GRDC +M TG GKS+CYQIP L +V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV+GLK +GI E+L S QT K ED +G+ +LY+TPE
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQT----DKTVED-KAGRGEYDILYMTPEKACGTT 115
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ S L SRG+ +L+A+DEAHCIS WGHDFRP Y++LSS+R+ LP+VP +ALTATA
Sbjct: 116 WTSLL----SRGV-SLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATH 170
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV----RYKDLLDDAYADLCSVLKANGDTCA 261
KV++D+++SL L N + SSF+RPN+ Y V R ++ ++ L+ G T
Sbjct: 171 KVREDILKSLMLTNAYIAVSSFDRPNILYGVKPLTRSNAFREELATEVVKDLEQGGST-- 228
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC DE++ L G + AYH+ L K R+ V ++ QVVVATVAFGMG
Sbjct: 229 IVYCNTIKDVDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMG 288
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ D+R V H+ PKS+E++YQESGR GRD LPS LY+ D R EF S+
Sbjct: 289 IDKPDIRRVIHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEFYTSE----- 343
Query: 382 SQSFSTRERSSKKSISD 398
T+ER KK+++D
Sbjct: 344 ---VRTQER--KKAVAD 355
>gi|302890734|ref|XP_003044250.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
gi|256725172|gb|EEU38537.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
Length = 1302
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 220/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ FG +FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 694 RMLKDRFGMEEFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTQGVTIV 753
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + K ++ + G P + LLYVTPE+
Sbjct: 754 VSPLLSLMQDQVDHMKRLGIQAVAFHGECSAEYKRQVMAAFEEGIPEHHVELLYVTPEMV 813
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +H RG L + IDEAHCIS WGHDFRP Y+ L +R P VP++ALT
Sbjct: 814 GKSTAFNNGMQTLHGRGKLARIVIDEAHCISQWGHDFRPDYKALGQVRQRYPGVPVMALT 873
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + SFNRPNL+YEVR K + + S+++ +
Sbjct: 874 ATATQNVIADIRHNLGMDRCQTFSQSFNRPNLYYEVRPKTTNNKTIDSIASLIRLQYRNQ 933
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ L+ GI YHA ++ + + V D W + +VVVATVAFG
Sbjct: 934 SGIVYTISRKNAEKVAESLTKQGIMARHYHAHVDPREKVEVQDGWQRGQVKVVVATVAFG 993
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++ +
Sbjct: 994 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGNPSDCILFYGKGDIRVLKKLIADGEG 1053
Query: 380 KNSQ 383
Q
Sbjct: 1054 SEEQ 1057
>gi|361131758|gb|EHL03410.1| putative ATP-dependent DNA helicase hus2/rqh1 [Glarea lozoyensis
74030]
Length = 855
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 215/350 (61%), Gaps = 11/350 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K LR FG FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ + G + LV
Sbjct: 118 KALRDRFGLRGFRQNQLEAINATLGGKDAFILMPTGGGKSLCYQLPAVVQSGKTRGVTLV 177
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM +QV LK + I +S + + ++ ++ L+ KP ++LLYVTPE+
Sbjct: 178 VSPLLSLMSDQVDHLKARNIQACLISGDTSKEERSIVFAALEERKPEQYIQLLYVTPEMV 237
Query: 142 ATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
A S L K+H L + IDEAHC+S WGHDFRP Y+ LS LR+ VP +ALT
Sbjct: 238 ANSRKLESTLDKLHRIQRLARIVIDEAHCVSQWGHDFRPDYKSLSKLRDRYHGVPFIALT 297
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCS-VLKAN 256
ATA V+ D + +L + N K SFNRPNL+YEVR K + ++ ++ +LK
Sbjct: 298 ATATEAVKLDCIHNLGMTNCEQYKQSFNRPNLYYEVRTKKGKGVSEEVLKNMSELILKDY 357
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y L R C++L+ L GI +HA ++ + V DW + + QVVVAT+
Sbjct: 358 KNMSGIIYTLSRKGCEDLAEKLREKGIRAHHFHASMDAVEKHQVQRDWQAGKHQVVVATI 417
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
AFGMGID+ DVR V H +PKS+E +YQE+GRAGRD PS LYYG D
Sbjct: 418 AFGMGIDKADVRFVIHHTMPKSLEGYYQETGRAGRDGKPSGCYLYYGYQD 467
>gi|254567515|ref|XP_002490868.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|238030664|emb|CAY68588.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|328351249|emb|CCA37649.1| bloom syndrome protein [Komagataella pastoris CBS 7435]
Length = 1302
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 225/356 (63%), Gaps = 12/356 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVV 84
+LR F FR QL+A+ A LSG D F LMPTGGGKS+CYQ+PAL + G +VV
Sbjct: 534 ILRETFKLESFRSNQLEAVNATLSGEDVFVLMPTGGGKSLCYQLPALVQSGSTRGTTVVV 593
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TAT 143
SPLI+LM++QV L I ++S T+Q + ++++ L+SG L L+Y++PE+ +A+
Sbjct: 594 SPLISLMQDQVEHLIANKIKAGMINSKGTVQERRQMFDLLNSG--DLDLIYLSPEMISAS 651
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
S LK++H G L + +DEAHC+SSWGHDFRP Y+ L+ + PD+P++ALTATA
Sbjct: 652 NQARSSLKRLHRIGKLARIVVDEAHCVSSWGHDFRPDYKTLNYFKKEYPDIPVMALTATA 711
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTCA 261
V D++ +L L P K SFNR NLFY +V+ K LD+ + + +
Sbjct: 712 NEHVVMDIVHNLGLNKPQCFKQSFNRTNLFYKVQVKTKTHLDEITNMINGQYR---NQTG 768
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC + +C++ SA L GI C+ YHAG+ + R +V W S + +V+ AT+AFGMG
Sbjct: 769 IIYCHSKNSCEQTSARLIQNGIKCSFYHAGMTTEDRFAVQSAWQSDKIRVICATIAFGMG 828
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
ID+ DVR V H +P+++E +YQE+GRAGRD S +++Y D R ++ ++ K+
Sbjct: 829 IDKPDVRFVIHLTVPRTLEGYYQETGRAGRDGNHSDCIMFYSYRDVRTLQTMIQKD 884
>gi|292486686|ref|YP_003529556.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|292897923|ref|YP_003537292.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783612|ref|ZP_19001107.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
gi|291197771|emb|CBJ44866.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552103|emb|CBA19140.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|312170752|emb|CBX79014.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ATCC BAA-2158]
gi|426277898|gb|EKV55621.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
Length = 610
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/379 (43%), Positives = 231/379 (60%), Gaps = 13/379 (3%)
Query: 24 EALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+ L
Sbjct: 10 EALADQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L G+A L+STQ + + + SGK +RLLY+ PE
Sbjct: 70 VVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGK--VRLLYIAPERLM 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTAT
Sbjct: 128 MDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A + D+ L L +PL+ SSF+RPN+ Y + K L ++ C I
Sbjct: 184 ADETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMGI
Sbjct: 241 IYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCLEEKKQ 357
Query: 383 QSFSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 358 GPLQDIERHKLNAMGAFAE 376
>gi|224025973|ref|ZP_03644339.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
gi|224019209|gb|EEF77207.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
Length = 727
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 224/353 (63%), Gaps = 19/353 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEQLKKYFGFDTFKGNQEAIIRNLLEGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E G+A F++S+ T ++ D+ SGK +LLYV PE L
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLTKSAIDQVKSDILSGKT--KLLYVAPESL 123
Query: 141 TATP--GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
T GF+ +K ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 124 TKEENVGFLKHVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIA 176
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKV+ D+ ++L + + + KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 177 LTATATPKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRAKTANVDR--DIIKFIRQNEE 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI YHAG++ RS+ D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEELAEVLQANGIKARPYHAGMDSATRSANQDAFLKEDIDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 GMGIDKPDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE 347
>gi|429091857|ref|ZP_19154510.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
gi|429099036|ref|ZP_19161142.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426285376|emb|CCJ87255.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426743518|emb|CCJ80623.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
Length = 609
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 224/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + SG+ +RLLY+ P
Sbjct: 66 GLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRSGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L + L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDSLSYWN----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L++PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLEDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|71282216|ref|YP_266851.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
gi|71147956|gb|AAZ28429.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
Length = 615
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 229/371 (61%), Gaps = 9/371 (2%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M S Q++++ L+ L+ +FG+ FR+ Q I ++L G+D LM
Sbjct: 1 MNSSVANAQTSAEISTELSAENNALLLDTLKHYFGYESFREGQAKIINSLLQGQDSLVLM 60
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQ+PA+ PG+ +VVSPLIALM++QV GL +GI+ F++S+ + I
Sbjct: 61 PTGGGKSLCYQLPAVLLPGVTVVVSPLIALMKDQVDGLTRQGISAAFINSSLEQSEISDI 120
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+ L G+ ++LLYV PE F+ L ++ L+L AIDEAHCIS WGHDFRP+
Sbjct: 121 FARL--GRGEIKLLYVAPERLTNYYFLQSLNQLP----LSLFAIDEAHCISQWGHDFRPA 174
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
Y KL L+ P VP++ALTATA +KD++ L L NP + SF+RPN+ + + K
Sbjct: 175 YTKLQCLKQNFPTVPVMALTATADVTTRKDILNQLALPNPYIHLDSFDRPNIRFTLAPKY 234
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
+ L +K G+ I+YC R ++L+ YL+A GI+CAAYHAGL ++ RS V
Sbjct: 235 ---NGEKQLLGYIKKKGEDSGIIYCNSRWQVEKLAKYLAASGINCAAYHAGLENEIRSLV 291
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
+ + Q+V+ATVAFG+GI++ +VR V HF P+++E++YQE GRAGRD L +++L
Sbjct: 292 QEGFTKDNIQIVIATVAFGLGINKPNVRYVIHFEPPRTLESYYQEIGRAGRDGLNAEALF 351
Query: 361 YYGMDDRRRME 371
D R++
Sbjct: 352 LVDDKDVARIK 362
>gi|194744401|ref|XP_001954683.1| GF16620 [Drosophila ananassae]
gi|190627720|gb|EDV43244.1| GF16620 [Drosophila ananassae]
Length = 1512
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/358 (43%), Positives = 221/358 (61%), Gaps = 7/358 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 677 LMHGLSYSFGLKSFRPNQLQVINASLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 736
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q L I + LS Q + IY DL++ P ++LLYVTPE ++++
Sbjct: 737 PLKSLIFDQTNKLASLDICAKSLSGEQKLADAMAIYRDLEAQPPMVKLLYVTPEKISSSA 796
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 797 RFQDTLDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 856
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L++ SSFNR NL Y+V K LDD + S +
Sbjct: 857 PRVRLDILAQLNLKHCKWFLSSFNRSNLRYKVMPKKGASTLDDISGYIRS---KPAHSSG 913
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CD+++ + G+ AYHAGL D R + DW++ + +V+ AT+AFGMG
Sbjct: 914 IIYCLSRKECDDVAKKMCKDGVRAVAYHAGLTDNERETRQKDWLTGKLRVICATIAFGMG 973
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
ID+ DVR V H+++PKS+E FYQE+GRAGRD + +LYY D R++ +L +++
Sbjct: 974 IDKPDVRFVLHYSLPKSIEGFYQEAGRAGRDGEVADCILYYNYADMLRIKKMLDADKA 1031
>gi|146300558|ref|YP_001195149.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146154976|gb|ABQ05830.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
Length = 705
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 220/343 (64%), Gaps = 11/343 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I VLSG D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 ELLHAKLKENFGFEKFRPNQETIITTVLSGNDALAIMPTGGGKSICFQLPALVLPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++S+Q+ + + ++L + + +L+Y+ PE
Sbjct: 64 ISPLIALMKDQVDSLKSNGISACYINSSQSSEEQQYYIDNLKTN--TFKLVYIAPES--- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L I S ++L+AIDEAHCISSWGHDFRP+Y L L+N P P+LALTATA
Sbjct: 119 ---LSYLDTIFSELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKNRFPSTPVLALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRVDITKQLNLKNPKTFVASFDRKNLSLEVR---PALDRVKQIIDFVENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L+ GI+ AYHAGL++ R+ D++I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKTTEELAEKLAKNGIAAKAYHAGLDNTTRAKTQDEFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYAD 335
>gi|344231853|gb|EGV63732.1| ATP-dependent DNA helicase [Candida tenuis ATCC 10573]
Length = 1031
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 228/361 (63%), Gaps = 13/361 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLV 83
+L F FR Q +AI ++L GRD F LMPTGGGKS+CYQ+P+L K G+ +V
Sbjct: 346 VLNKKFKLQNFRSNQFEAIISLLQGRDVFVLMPTGGGKSLCYQLPSLIKIGARNQGVTIV 405
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLI+LM++QV LK K I ++S K +I + + + L L+Y++PE+ +
Sbjct: 406 ISPLISLMQDQVQHLKNKNIKAGMINSKIEYSEKKQIIDLFKTAQ--LDLVYLSPEMVNS 463
Query: 144 PGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ ++ K+++ LN V +DEAHCISSWGHDFRP Y+ +S R PD+PI+ALTAT
Sbjct: 464 SAQIQRIIKQLYDTKQLNKVIVDEAHCISSWGHDFRPDYKAMSIFRQNYPDIPIMALTAT 523
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD--LLDDAYADLCSVLKANGDTC 260
A KV+ D++ L +++P V K SFNR NL+YE+R K ++D ++L +
Sbjct: 524 ANDKVRLDILHLLNMKSPKVFKQSFNRINLYYEIRMKKAGFVEDIRD---TILAKYKNQT 580
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C+++S L+ GI A YHAG++ + R V D W R +V+ AT+AFGM
Sbjct: 581 GIIYCHSKQSCEQISMKLNQFGIESAFYHAGMSTEDRFEVQDSWQQERLRVICATIAFGM 640
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +P+++E +YQE+GRAGRD L S ++YY D R ++ ++ K++
Sbjct: 641 GIDKPNVRFVIHSFLPRNLEGYYQETGRAGRDGLHSDCIMYYSYKDARNLQLMIQKDEEY 700
Query: 381 N 381
N
Sbjct: 701 N 701
>gi|85817623|gb|EAQ38797.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 731
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/358 (45%), Positives = 224/358 (62%), Gaps = 20/358 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG QF+ Q + I++++ G F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKKYFGFGQFKGLQEEVIKSIVGGNHTFVIMPTGGGKSLCYQLPALIAEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV L+ ++GIA SS ++KT + ED+ G +LLYV PE L
Sbjct: 68 PLIALMKNQVDALRGISQDEGIAHVLNSSLTKGEIKT-VKEDIARG--VTKLLYVAPESL 124
Query: 141 TATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPIL 197
T F+ + K ++ +AIDEAHCIS WGHDFRP YR L + + D +PI+
Sbjct: 125 TKEENVEFLREQK-------ISFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDNIPII 177
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
A+TATA PKVQ+D++++L + N K+SFNRPNL+YEVR K DA D+ +K N
Sbjct: 178 AVTATATPKVQEDILKNLGITNANTFKASFNRPNLYYEVRPKTAQVDA--DIIRFVKQNE 235
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R +EL+ L G+ YHAGL+ K R+ D ++ VVVAT+A
Sbjct: 236 GKSGIIYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIA 295
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
FGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 296 FGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS 353
>gi|424842508|ref|ZP_18267133.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
gi|395320706|gb|EJF53627.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
Length = 737
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 227/358 (63%), Gaps = 17/358 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG QF+ +Q + IQ++L G+D F +MPTGGGKS+CYQ+PAL G +VV
Sbjct: 7 SLTTALKKYFGFEQFKGQQEEIIQSILGGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVV 66
Query: 85 SPLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ E FL+S+ + ++ +D+ SG + +LLY+ PE L
Sbjct: 67 SPLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSG--ATKLLYIAPETL 124
Query: 141 TA--TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPIL 197
T T F+S++K ++ VA+DEAHCIS WGHDFRP YR++ S+ N ++PI+
Sbjct: 125 TKEDTLRFLSQIK-------VSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPII 177
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKV+ D++++L L+ P SFNR NLFYEV+ K +D + +K
Sbjct: 178 ALTATATPKVRMDIVKTLRLEAPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQFIKDKA 237
Query: 258 -DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y R T +E++ LS I A YHAGL K RS D ++ + V+VAT+
Sbjct: 238 PNESGIIYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D R+E L
Sbjct: 298 AFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFL 355
>gi|254583105|ref|XP_002499284.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
gi|238942858|emb|CAR31029.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
Length = 1294
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 222/356 (62%), Gaps = 10/356 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
L FG FR QL A+ + L+G+D F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 553 LHQSFGLRSFRPNQLQAVNSTLAGKDVFVLMPTGGGKSLCYQLPAIVKSGKTRGTTIVIS 612
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L I SS T + + + G L L+Y++PE+ +A+
Sbjct: 613 PLISLMQDQVEHLLNNNIKASMFSSRGTADQRRQTFNLFIHG--LLDLIYISPEMISASE 670
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+KK+H+ G L + +DEAHC+S+WGHDFRP Y++L + P VP++ALTATA+
Sbjct: 671 QCKRGIKKLHNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPHVPMMALTATAS 730
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ DV+ +L L++P+ LK SFNR NLFY V K + A++C + + I+
Sbjct: 731 EQVRLDVIHNLELKDPVFLKQSFNRKNLFYGVVRK--TKNTIAEICESINTRFANQTGII 788
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ +A + GI CA YHAG+ RS V W + QV+ ATVAFGMGID
Sbjct: 789 YCHSKNSCEQTAAQIQRNGIRCAFYHAGMEPDERSDVQRAWQNDDLQVICATVAFGMGID 848
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+ +P+++E +YQE+GRAGRD PS + YY D R ++ ++ K+++
Sbjct: 849 KADVRFVYHYTVPRTLEGYYQETGRAGRDGKPSFCITYYTFRDVRSIQTMIQKDKN 904
>gi|408379129|ref|ZP_11176723.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
gi|407746613|gb|EKF58135.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
Length = 618
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 222/358 (62%), Gaps = 15/358 (4%)
Query: 19 PLHEKEAL---VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
PL AL + +L+ +G++ FR +Q + + V+SG D L PTG GKS+C+Q+PAL
Sbjct: 9 PLFSHPALDGPLSVLKRIYGYSAFRGRQAEVVSHVVSGGDAVVLFPTGAGKSLCFQVPAL 68
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+PG+ +VVSPLIALM +QV LK G+ L+ST + + +I LD G+ L LY
Sbjct: 69 CRPGVGVVVSPLIALMRDQVEALKGLGVKAAALNSTLSREEYVEIRRALDRGE--LDFLY 126
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
VTPE TATPGF+ ++ + + L AIDEAHC+S WGHDFRP YR+L L + P VP
Sbjct: 127 VTPERTATPGFIEMMQGVE----IALFAIDEAHCVSQWGHDFRPEYRELGKLADLFPGVP 182
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
LALTATA P ++D++ L L V +SF+RPN+ YE+ +D L L
Sbjct: 183 RLALTATADPHTREDIIARLRLDEAQVFTTSFDRPNIAYEIVERD---QPRQQLLRFLSR 239
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ + IVYCL R +E++++L GI YHAG++ R + D ++ +VAT
Sbjct: 240 HKGSSGIVYCLSRAKVEEIASWLDDQGIRALPYHAGMDRAIRDANQDAFLKEEDLCLVAT 299
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
VAFGMGID+ +VR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D R RM
Sbjct: 300 VAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRGRM 357
>gi|332882718|ref|ZP_08450329.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679220|gb|EGJ52206.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 729
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 224/354 (63%), Gaps = 17/354 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 12 LKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIVISPLIA 71
Query: 90 LMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
LM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV PE
Sbjct: 72 LMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISNGKT--KLLYVAPESLIKE 127
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATA 203
+ + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI+ALTATA
Sbjct: 128 EYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPIVALTATA 183
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N I+
Sbjct: 184 TPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQNTKKSGII 241
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 242 YCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGID 301
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSK 376
+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++ K
Sbjct: 302 KPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGK 355
>gi|402830902|ref|ZP_10879596.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
gi|402283336|gb|EJU31854.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
Length = 729
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/358 (45%), Positives = 229/358 (63%), Gaps = 17/358 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG + F+ KQ D I++++ G F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 8 LQKALKSIFGFSAFKGKQEDIIRSIMEGNHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 67
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDVVR--GISGTDKIAHVLNSSLTKGEIRTVMEDIRNG--DTKLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
+ L+ I+ ++ VA+DEAHCIS WGHDFRP YR + ++ L + +PI+AL
Sbjct: 124 LTKDEYADFLRTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIPIIAL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + V KSSFNRPNL+YEVR K + +D+ +K
Sbjct: 180 TATATTKVQEDILKNLGIPQANVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQRPGQ 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ +VVVAT+AFG
Sbjct: 238 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSK 376
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++SK
Sbjct: 298 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVSK 355
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 217/342 (63%), Gaps = 9/342 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ QFR Q + I +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 2 ILKTLKSYFGYTQFRPLQEEIITQILHKKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 61
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+ST I + G+ ++LLY++PE L
Sbjct: 62 PLISLMKDQVESLQANGIIARALNSTNDETTDANIRFECRQGR--VKLLYISPERLMGEV 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ K +I +L AIDEAHCIS WGHDFRP Y +L LR PDVP++ALTATA
Sbjct: 120 NFLMKDIRI------SLFAIDEAHCISQWGHDFRPEYTQLKILRQQFPDVPVVALTATAD 173
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L +++P + SSF+RPNL +V+ + + + + I+Y
Sbjct: 174 KITRQDIIRQLAMKDPQIFISSFDRPNLSLDVKRGFQQKEKMRTIFDFIARHRGESGIIY 233
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ ++++ L GI+ A YHAGL+ AR + DD+I+ R QVV AT+AFGMGID+
Sbjct: 234 CMSRSKTEKVAEMLEEHGIATAVYHAGLSTAAREAAQDDFINDRVQVVCATIAFGMGIDK 293
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D
Sbjct: 294 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGD 335
>gi|325093139|gb|EGC46449.1| RecQ family helicase MusN [Ajellomyces capsulatus H88]
Length = 1559
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 237/401 (59%), Gaps = 22/401 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNGQ-AGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q +R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQ--KSR 1043
Query: 389 ERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+R + + F Q+L ++F + NR D
Sbjct: 1044 QRQMLRHVVQFCENRSDCRRVQILAYFNEKFKKENCNRSCD 1084
>gi|399033938|ref|ZP_10732419.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398067770|gb|EJL59249.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 703
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/360 (43%), Positives = 228/360 (63%), Gaps = 11/360 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I +LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 EILHAKLKENFGFEKFRPNQETIINTILSGQDTLAIMPTGGGKSICFQLPALVLPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++S+Q+ + + E+L S + +L+Y+ PE
Sbjct: 64 ISPLIALMKDQVDSLKANGISACYINSSQSSEEQQFYIENLKSN--TFKLVYIAPE---- 117
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L I + ++L+AIDEAHCISSWGHDFRP+Y L L++ P PILALTATA
Sbjct: 118 --SLSYLDVIFNELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRTDITKQLNLKNPKTFVASFDRKNLSLEVRPAL---DRVKQIIDFVENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L GI+ AYHAGL +K R+ D++I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKTTEELAEKLQKSGITAKAYHAGLENKLRAKTQDEFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D +++ S+ + + Q
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQLQKFASEGLNSDVQ 352
>gi|312129258|ref|YP_003996598.1| ATP-dependent DNA helicase recq [Leadbetterella byssophila DSM
17132]
gi|311905804|gb|ADQ16245.1| ATP-dependent DNA helicase RecQ [Leadbetterella byssophila DSM
17132]
Length = 773
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 224/368 (60%), Gaps = 18/368 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG FR +Q I++V+SG++ F +MPTG GKS+CYQ+PA G +V+SPLIA
Sbjct: 14 LKEIFGFDNFRGEQEKIIKSVISGKNTFVIMPTGAGKSLCYQLPATVLEGTAIVISPLIA 73
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST ++ D+ SG +LLY+ PE +
Sbjct: 74 LMKNQVDQLTAYGINAQFLNSTLNKSEMNRVKNDVISG--VCKLLYIAPESLTKEDNLEF 131
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQ 208
LKK ++ VA+DEAHCIS WGHDFRP YRK+ + N +PI+ALTATA PKVQ
Sbjct: 132 LKKAK----ISFVAVDEAHCISEWGHDFRPEYRKIKDIIENIDTALPIVALTATATPKVQ 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ +SL + + ++ K+SFNR NL+YEVR K +A L + N IVYCL R
Sbjct: 188 LDIKKSLNMDDSVIFKTSFNRANLYYEVRPKQ---NAKKQLIKFVSQNRGKSGIVYCLSR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L+ G YHAGL+ + R D +++ +VVAT+AFGMGID+ DVR
Sbjct: 245 KKVEEIAELLNVNGFKALPYHAGLDPEVRMKNQDAFLNENCDIVVATIAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H++ PKS+E +YQE+GRAGRD + L++Y +DD ++E N+ KN
Sbjct: 305 FVVHYDAPKSLEGYYQETGRAGRDGIDGTCLMFYALDDITKLEKF---NKDKN-----VT 356
Query: 389 ERSSKKSI 396
ER + K++
Sbjct: 357 ERDNAKAL 364
>gi|156844324|ref|XP_001645225.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156115884|gb|EDO17367.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 1280
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 231/362 (63%), Gaps = 10/362 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV-- 81
E L L F FR QL+AI A LSGRD F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 518 EELYYRLHNTFRIQSFRQNQLEAINATLSGRDVFVLMPTGGGKSLCYQLPAIVKSGTTSG 577
Query: 82 --LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L +K I +SS T + + + +G L L+Y++PE
Sbjct: 578 TTIVISPLISLMQDQVEHLLDKNIKACMISSKSTAAQRKETFNLFVNG--LLDLVYISPE 635
Query: 140 L-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ +A+ + K++S L+ + +DEAHC+S+WGHDFRP Y+ LS + P++P++A
Sbjct: 636 MISASQQCKRAINKLYSSSKLSRIVVDEAHCVSNWGHDFRPDYKSLSFFKREYPNIPLVA 695
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA+ +V+ D++ +L + NPL LK SFNR NL Y+V+ K + ++C++LK
Sbjct: 696 LTATASEQVRMDIIANLEMHNPLTLKQSFNRTNLNYQVKAKS--KETINEICTLLKGRFK 753
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ I+YC + +C++++ +S I CA YHAG++ R + W ++ QV+ ATVA
Sbjct: 754 NQSGIIYCHSKNSCEQVAEQISQHKIRCAFYHAGIDPAERLQIQKAWQKNQIQVICATVA 813
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H+ +P+++E +YQE+GRAGRD L S + Y+ D R ++ ++ K+
Sbjct: 814 FGMGIDKPDVRYVFHYTVPRTLEGYYQETGRAGRDGLYSYCICYFSFKDVRTLQTMIQKD 873
Query: 378 QS 379
++
Sbjct: 874 KN 875
>gi|240275770|gb|EER39283.1| RecQ family helicase MusN [Ajellomyces capsulatus H143]
Length = 1559
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 237/401 (59%), Gaps = 22/401 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNGQ-AGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q +R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQ--KSR 1043
Query: 389 ERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+R + + F Q+L ++F + NR D
Sbjct: 1044 QRQMLRHVVQFCENRSDCRRVQILAYFNEKFKKENCNRSCD 1084
>gi|323499630|ref|ZP_08104598.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
gi|323315231|gb|EGA68274.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
Length = 611
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/355 (41%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M +T + +P H +++++ + FG+ +FRD Q + I++ + G+D +MPTGGGKS
Sbjct: 1 MTATLLAESTEPTHTPQSVLQEV---FGYQEFRDGQQEVIESAVRGQDSLVIMPTGGGKS 57
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQIPAL + G+ LV+SPLI+LM++QV LK G+A E ++ST +Y ++SG
Sbjct: 58 LCYQIPALVRNGLTLVISPLISLMKDQVDQLKANGVAAECVNSTMPRDELISVYNRMNSG 117
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
+++L+YV+PE F+ +L+++ L+++A+DEAHCIS WGHDFRP Y L L
Sbjct: 118 --AIKLIYVSPERVLMRDFIERLEQLP----LSMIAVDEAHCISQWGHDFRPEYASLGQL 171
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA 247
+ Y P VP++ALTATA +KD+M+ L LQ+P SF+RPN+ Y + K +
Sbjct: 172 KQYFPHVPVMALTATADDATRKDIMQRLQLQDPHSYLGSFDRPNIRYTLIEKH---KPIS 228
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+ L+ C I+YC R + ++ L G+ A+YHAGL+ R+ V + +
Sbjct: 229 QVVRFLEGQRGQCGIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQEAFQRD 288
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 289 DIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 343
>gi|227114714|ref|ZP_03828370.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|403060389|ref|YP_006648606.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807715|gb|AFR05353.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 608
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/343 (45%), Positives = 227/343 (66%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L + L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----IALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|345882276|ref|ZP_08833781.1| ATP-dependent DNA helicase RecQ [Prevotella oulorum F0390]
gi|343918032|gb|EGV28804.1| ATP-dependent DNA helicase RecQ [Prevotella oulorum F0390]
Length = 725
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 219/352 (62%), Gaps = 17/352 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG QF+ Q IQ +++G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LAKQLKHYFGFDQFKGDQEAIIQNLMAGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LT 141
PLIALM+NQV L ++ L+S+ T K+ +D+ SG+ +LLYV PE LT
Sbjct: 67 PLIALMKNQVDVMNSLSDEPCLAHCLNSSLTKTAVQKVMDDIRSGRT--KLLYVAPESLT 124
Query: 142 --ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T F+ +K ++ A+DEAHCIS WGHDFRP YR + + N + + P++AL
Sbjct: 125 KEETVAFLQTIK-------ISFYAVDEAHCISEWGHDFRPEYRNIRPIINRIGNAPVIAL 177
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KV+ D+ +SL + + +SSFNRPNL+YEVR K +D + ++ N
Sbjct: 178 TATATDKVRSDIKKSLGIADAKEFRSSFNRPNLYYEVRPK--TNDIDKQIIKFIRQNAGK 235
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R +EL+ L A I A YHAGL RS DD++ R V+VAT+AFG
Sbjct: 236 SGIIYCLSRKKVEELAEILRANDIKAAPYHAGLESGVRSQTQDDFLMERLDVIVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
MGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 MGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAQKDLKKLE 347
>gi|333378586|ref|ZP_08470317.1| ATP-dependent DNA helicase RecQ [Dysgonomonas mossii DSM 22836]
gi|332883562|gb|EGK03845.1| ATP-dependent DNA helicase RecQ [Dysgonomonas mossii DSM 22836]
Length = 731
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/346 (44%), Positives = 216/346 (62%), Gaps = 13/346 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q IQ +L G+D F LMPTGGGKS+CYQ+PAL G +++SPLIA
Sbjct: 12 LKKHFGFDNFKGNQKAIIQNLLDGKDTFVLMPTGGGKSLCYQLPALLMEGTAVIISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E G+A F++S+ ++ D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAMRNFSEEDGVA-HFMNSSLNKAAIEQVKGDILSGKT--KLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L++I ++ AIDEAHCIS WGHDFRP YR++ + N + PI+ALTATA P
Sbjct: 129 NIDFLRQIK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIVNEIGKHPIIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + V KSSFNR NL+YEVR K D D+ +K+ G I+YC
Sbjct: 185 KVQMDIQKNLGMVEADVFKSSFNRENLYYEVRSK--TDKVDKDIIKYIKSQGTKSGIIYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L I+ YHAGL+ RS+ D ++ + V+VAT+AFGMGID+
Sbjct: 243 LSRKKVEEFAEILQTNNINALPYHAGLDPSTRSANQDAFLMEKVNVIVATIAFGMGIDKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 303 DVRYVIHYDMPKSLEGYYQETGRAGRDGGEGRCIAFYSFKDLQKLE 348
>gi|324502133|gb|ADY40940.1| ATP-dependent DNA helicase Q5 [Ascaris suum]
Length = 662
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 188/544 (34%), Positives = 283/544 (52%), Gaps = 87/544 (15%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALA 76
P +E +LR FG+ +++ Q AI +L R D F +PTGGGKS+CYQ+PAL
Sbjct: 98 PEQLQEEAKNVLRNVFGYEKYKTSIQKKAIAGILRKRWDVFVCLPTGGGKSLCYQLPALV 157
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ ++ SPLIAL+++QV K +GI + L+S T + I EDL + P +R+LY+
Sbjct: 158 HSGVTVIFSPLIALIQDQVSACKARGIKCDSLNSKCTADERASIIEDLRAASPQIRMLYI 217
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE ATP + ++ RGLLN + +DEAHC++ WGHDFRP Y KL +LR+ P+V
Sbjct: 218 TPESAATPNIQRLISNLNKRGLLNYLVVDEAHCVTHWGHDFRPDYLKLGNLRSLAPEVRW 277
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-------------- 242
+ALTATA PK Q+D+++ L L N + K+S R NL Y+V KDL+
Sbjct: 278 IALTATANPKAQEDILKQLRLSNVRIFKASTFRANLHYDVILKDLIECVPERHLALFMMK 337
Query: 243 -------------DDAYADLCS--------------VLKANGDTCAIVYCLERTTCDELS 275
D D+CS V +G IVYC R C +++
Sbjct: 338 ALSRIEKKHNDTKDSTIVDVCSPSTSADKRESHGQRVFTGSG----IVYCRTREECGKMA 393
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
L+ G+ AYHAGL++K R SV + W+ + V+ AT++FGMGID+ DVR+V H+
Sbjct: 394 MRLTEEGVPACAYHAGLSNKVRDSVQEKWMKNEIPVLAATISFGMGIDKADVRVVVHWTA 453
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395
+++ A+YQESGRAGRD S +YY DDR+ + F+++++ K TR + K
Sbjct: 454 SQNLAAYYQESGRAGRDGKRSFCRIYYSRDDRQLLNFLINQDIRK------TRAKKIDKK 507
Query: 396 ISDFSQVLDVAGKRFSRVL------GNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
+ D + + A F +++ G R+ V F P
Sbjct: 508 LID--EQIKAAQHGFEKMIEFCEKPGCRH---------------VAFAKYFGDEDTRP-- 548
Query: 450 LCKNSCDACKHP----NLLAKYLGELTSAVLQKNHFSQIFISSQD--MTDGGQYS--EFW 501
C+ SCD CK P + +A++ E + + + I+ D + +GG+ + E W
Sbjct: 549 -CRVSCDYCKDPKACEDAIARFSEESWKTAISSGYRKRGHINDDDSFLYEGGKRAQNEHW 607
Query: 502 NRDD 505
+ DD
Sbjct: 608 DADD 611
>gi|225563190|gb|EEH11469.1| RecQ family helicase MusN [Ajellomyces capsulatus G186AR]
Length = 1559
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/361 (44%), Positives = 222/361 (61%), Gaps = 11/361 (3%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRRKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNGQ-AGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQKSRQR 1045
Query: 389 E 389
+
Sbjct: 1046 Q 1046
>gi|197287158|ref|YP_002153030.1| ATP-dependent DNA helicase RecQ [Proteus mirabilis HI4320]
gi|227357149|ref|ZP_03841518.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|425070259|ref|ZP_18473373.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
gi|425074080|ref|ZP_18477185.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|194684645|emb|CAR46565.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
gi|227162681|gb|EEI47648.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|404594320|gb|EKA94907.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|404595525|gb|EKA96065.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
Length = 609
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 219/340 (64%), Gaps = 13/340 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ QFR Q + I +++GRDC +MPTGGGKS+CYQIPAL G+ +VVSPLI
Sbjct: 16 ILRETFGYQQFRPGQQEIIDTIITGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L GI FL+STQ+ + ++ G+ ++LLY+ PE F+
Sbjct: 76 SLMKDQVDQLCLHGIDAAFLNSTQSRDEQLQVQMRCQRGE--IKLLYIAPERLMMESFLH 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + L+A+DEAHCIS WGHDFRP YR + LR YLPDVPI+ALTATA +
Sbjct: 134 HLVQWQP----ALLAVDEAHCISQWGHDFRPEYRGIGLLRQYLPDVPIIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D++ L L+ PLV SSF+RPN+ Y + +YK L L ++ I+YC
Sbjct: 190 HDIINQLALRTPLVHISSFDRPNIRYTLVEKYKPL-----DQLWLFIRGQKGKSGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R+ +E + L G+S AAYHAG++ R+ V D + Q+VVATVAFGMGI++ +
Sbjct: 245 SRSKVEETAERLGKRGLSIAAYHAGMDIATRAKVQDAFQRDDLQIVVATVAFGMGINKPN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAQAVLFYDPAD 344
>gi|366993190|ref|XP_003676360.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
gi|342302226|emb|CCC69999.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
Length = 1344
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 248/428 (57%), Gaps = 38/428 (8%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+SPLI+LM++Q
Sbjct: 587 FRSNQLEAVDATLSGKDVFVLMPTGGGKSLCYQLPAVVKSGKTKGTTIVISPLISLMQDQ 646
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L K I SS T + + + + G L L+Y++PE+ +A+ + K+
Sbjct: 647 VEHLLAKDIKACMFSSKGTAEQRKQTFNLFIHG--LLDLIYISPEMISASEQCKRAISKL 704
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
HS G L + +DEAHC+S+WGHDFRP Y++L + PDVP++ALTATA+ +V+ D++
Sbjct: 705 HSDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMIALTATASEQVRMDIIH 764
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCD 272
+L L++P+ LK SFNR NL+YEV+ K +A ++ +K + I+YC + +C+
Sbjct: 765 NLELKDPVFLKQSFNRTNLYYEVKKK--TKNAIFEIIDSIKTKFRNQTGIIYCHSKNSCE 822
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ S L GI CA YHAG+ R V W + QV+ ATVAFGMGID+ DVR V H
Sbjct: 823 QTSDKLQRQGIKCAFYHAGMEPDDRLKVQKAWQADEIQVICATVAFGMGIDKPDVRFVYH 882
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
F +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++ + Q +
Sbjct: 883 FTVPRTLEGYYQETGRAGRDGKFSYCITYFSFRDVRTMQTMIQKDENLDRQ-------NK 935
Query: 393 KKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCK 452
+K ++ QV+ Y D LVL Y++ + LC
Sbjct: 936 EKHLNKLQQVMS-------------YCDNM----TDCRRKLVLSYFN----EDFDSKLCH 974
Query: 453 NSCDACKH 460
+CD CK+
Sbjct: 975 KNCDNCKN 982
>gi|356541884|ref|XP_003539402.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1534
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 256/464 (55%), Gaps = 29/464 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 780 FGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHPGITLVISPLVSLIQD 839
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I +LS+ + I +L+S +LLYVTPE A + + L
Sbjct: 840 QIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDN 899
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H R LL + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 900 LHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 959
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL Y V + K L+D + ++ N D C IVYCL R
Sbjct: 960 QALGLVNCIIFRQSFNRPNLRYSVIPKTKKCLED----IDKFIRENHFDECGIVYCLSRM 1015
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G CA YH ++ R+SV W ++ ATVAFGMGI++ DVR
Sbjct: 1016 DCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICATVAFGMGINKPDVRF 1075
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ +LS+ + S S
Sbjct: 1076 VIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYTYSDYIRVKHMLSQGAIEQSSMTSGYN 1135
Query: 390 RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
RS ++ + ++L+ + R++ DV L L H ++ S
Sbjct: 1136 RS---NMINSGRILETNTENLVRMVSYCENDV----DCRRLLQLA------HFGEKFNSS 1182
Query: 450 LCKNSCDAC--------KHPNLLAKYLGELTSAVLQKNHFSQIF 485
C +CD C K +AK L EL Q+ S I
Sbjct: 1183 TCLKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRFSSSHIL 1226
>gi|385786868|ref|YP_005817977.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
gi|310766140|gb|ADP11090.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
Length = 610
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 231/379 (60%), Gaps = 13/379 (3%)
Query: 24 EALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+ L
Sbjct: 10 EALAGQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L G+A L+STQ + + + SG ++RLLY+ PE
Sbjct: 70 VVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSG--TVRLLYIAPERLM 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTAT
Sbjct: 128 MDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A + D+ L L +PL+ SSF+RPN+ Y + K L ++ C I
Sbjct: 184 ADETTRNDIARLLRLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMGI
Sbjct: 241 IYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCMEEKTQ 357
Query: 383 QSFSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 358 GPLQDIERHKLNAMGAFAE 376
>gi|109896583|ref|YP_659838.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
gi|109698864|gb|ABG38784.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
Length = 602
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 210/342 (61%), Gaps = 10/342 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ +FRD Q D I+ +L G D LMPTGGGKS+CYQIPAL G+ +VVSPLI
Sbjct: 14 VLKTVFGYDEFRDGQRDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSPLI 73
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L G++ +++S + + +Y + G +L+YV PE F+
Sbjct: 74 ALMKDQVDALVASGVSAAYINSNLSSEEIHNVYRGMQDGH--YKLIYVAPERLMQFDFIQ 131
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L L A+DEAHC+S WGHDFR YR+L L+ P VP++ LTATA +
Sbjct: 132 RLHSLE----LALFAVDEAHCVSHWGHDFRKEYRRLGQLKQQFPTVPVVGLTATADITTR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+++ L LQ+P + K SF+RPN +RY L D + I+YC R
Sbjct: 188 SDILQQLALQDPFIFKGSFDRPN----IRYNQLFKYKATDQVIQYVKQQEGSGIIYCNSR 243
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+LS L+ GI+CA YHAGL R + D+I ++VATVAFGMGI++ +VR
Sbjct: 244 KKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINKSNVR 303
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V HF++P+S+EA+YQE+GRAGRD +P+++LL + D R+
Sbjct: 304 FVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARI 345
>gi|282898834|ref|ZP_06306821.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
gi|281196361|gb|EFA71271.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
Length = 719
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 258/447 (57%), Gaps = 42/447 (9%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K + +FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 6 LEKEFKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ + SS T QV+++ E + +GK ++LLYV PE +
Sbjct: 66 PLIALMQDQVEALRNNNISATLINSSLTTYQVRSR-EEAIMNGK--VKLLYVAPERLVSE 122
Query: 145 GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L + + GL N V IDEAHC+S WGHDFRP YR+L LR VP +ALTATA
Sbjct: 123 RFLPILDVVKEKFGLANFV-IDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ ++Y ++ ++K N + I+
Sbjct: 182 TDRVRADIIQQLGLKQPAVHIASFNRQNLYYEVRPKN--RNSYGEILEIIKEN-EGSGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L I+ YHAGL D R+ +I +++VAT+AFGMGI+
Sbjct: 239 YCLTRKNVDELTLKLQNSQIAALPYHAGLVDYERAKNQTRFIRDDVRIMVATIAFGMGIN 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD PS+ L++ D + +E+ + K Q
Sbjct: 299 KPDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFGDVKTIEWSIGKKTDPQEQ 358
Query: 384 SFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLL 443
+ ++ QV+D A D + +G+F
Sbjct: 359 LIAKQQ---------LRQVIDYAEGT----------DCRRTIQLGYF------------G 387
Query: 444 KQIPVSLCKNSCDACKHPNLLAKYLGE 470
++ P S C N CD C++P L + E
Sbjct: 388 ERFPGS-CAN-CDNCRYPKPLQDWTVE 412
>gi|423211952|ref|ZP_17198481.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
gi|295088062|emb|CBK69585.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens XB1A]
gi|392695316|gb|EIY88539.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
Length = 726
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|297739574|emb|CBI29756.3| unnamed protein product [Vitis vinifera]
Length = 1235
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 261/465 (56%), Gaps = 33/465 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 434 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQD 493
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I +LS++ + +I +L S K +LLY TPE A M L
Sbjct: 494 QIMHLLQANIPAAYLSASMEWNEQQEILRELSSCK--YKLLYATPEKVAKSDVLMRNLDN 551
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+R LL+ + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 552 LHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 611
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + + LDD + ++ N D C I+YCL R
Sbjct: 612 QALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDD----IDKFIRENHFDECGIIYCLSRL 667
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 668 DCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 727
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ ++++ + S S +
Sbjct: 728 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQN 787
Query: 390 RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
RS +++ ++L+ + R++ DV L LV H ++ +
Sbjct: 788 RS---NMASSGRILETNTENLLRMVSYCENDV----DCRRLLQLV------HFGEKFDSA 834
Query: 450 LCKNSCDAC--------KHPNLLAKYLGELTSAVLQKNHFSQIFI 486
CK +CD C K +AK L EL L + FS I
Sbjct: 835 HCKKTCDNCLKIKSFVEKDVTEIAKQLVELVK--LTREQFSSSHI 877
>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
Length = 604
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 218/333 (65%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I+AVL+G D +M TGGGKS+CYQ+PAL G+ LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEVIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 75 QVDQLLTNGIEAGYINSTQTFEEQQHVEQKAISGQ--LKLLYLSPEKVMTQGFFHFI--- 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L LR+ P+VP++ALTATA P + D++
Sbjct: 130 -SHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSTFPNVPMMALTATADPTTRHDIIH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ P SF+RPN+ Y V+ K + A + K G + IVYC R +E
Sbjct: 189 HLRLQEPHTYLGSFDRPNIRYTVQEKFKPMEQLAKF--IAKQQGKS-GIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA G+S YHAG+ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVAHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAILFYDPAD 338
>gi|373501519|ref|ZP_09591870.1| ATP-dependent DNA helicase RecQ [Prevotella micans F0438]
gi|371948172|gb|EHO66059.1| ATP-dependent DNA helicase RecQ [Prevotella micans F0438]
Length = 727
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 220/350 (62%), Gaps = 11/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ +Q IQ +L G + F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEYLKRYFGFDKFKGEQQAIIQNLLDGNNTFVLMPTGGGKSLCYQLPSLLMEGTAIVVS 66
Query: 86 PLIALMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + +E G+A SS + +++ ++ D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGLAHYLNSSLKKLEID-RVKADISSGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ AIDEAHCIS WGHDFRP YR++ + + PI+ALTA
Sbjct: 124 TKEENVEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRRIRFAIDEICKAPIIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA KV+ D+++SLC+ + KSSFNRPNL+YEVR K +D L ++ +
Sbjct: 180 TATDKVRTDIIKSLCIDDCKEFKSSFNRPNLYYEVRPKRSDEDTNRQLIRFIRQHAGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+A L A I A YHAGL+ + RS D ++ V+VAT+AFGMG
Sbjct: 240 IIYCLSRRKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDGFLMEEIDVIVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+NIPKS+E +YQE+GRAGRD + +Y D ++++
Sbjct: 300 IDKPDVRFVIHYNIPKSLEGYYQETGRAGRDGEEGICITFYSQKDLKKLD 349
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 238/382 (62%), Gaps = 18/382 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + +LR FG+ FR Q + I A LSG+D +M TG GKS+CYQIPAL PG+ L
Sbjct: 15 KTTALNMLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTL 74
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L+ GI +FL+S+QT + + ++ L SG+ L+LLYV+PE
Sbjct: 75 VISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQ--LKLLYVSPEKVM 132
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+ PI+ALTAT
Sbjct: 133 TNSFF----QLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTAT 188
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L L +P SF+RPN+ Y E ++K + L + A
Sbjct: 189 ADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEKFKPM-----EQLTRFVLAQKGKS 243
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R+ + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFGM
Sbjct: 244 GIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNIQVVVATIAFGM 303
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y + D ++ +L K+++
Sbjct: 304 GINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYELADYAWLQKILLEKSET 363
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
Q E+ ++I +F++
Sbjct: 364 PQRQI----EQHKLEAIGEFAE 381
>gi|85818249|gb|EAQ39409.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 701
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/359 (43%), Positives = 230/359 (64%), Gaps = 14/359 (3%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N L ++ L KLL+ HFG+ FR Q + I+++ +G+D +MPTGGGKSMC+Q+PALA
Sbjct: 3 NSALPTQQDLHKLLKTHFGYDGFRPNQQEIIESICNGQDALVIMPTGGGKSMCFQLPALA 62
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ LV+SPLIALM++QV L+ GI + +STQ + K+ DL +L L+YV
Sbjct: 63 LDGVALVISPLIALMKDQVDALRANGIKAAYYNSTQPPEETQKVLSDLQHN--ALDLIYV 120
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE L +S +K ++L+AIDEAHCISSWGHDFRP+Y +L L+ P+ P
Sbjct: 121 APESLQLLDPVLSTIK-------ISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRYPETP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA Q D+ + L + SSF+RPNL+ +VR ++ D L+
Sbjct: 174 LVALTATADRSTQDDIAQQLSIPQAKKYISSFDRPNLYLDVRPGQKRNEQILDF---LED 230
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ I+YCL R + + L+A L + G + AAYHAG++ + RS V +D+I+ ++ AT
Sbjct: 231 HPFESGIIYCLSRKSTENLAAKLKSNGHNAAAYHAGMSAEQRSKVQEDFINDTTPIICAT 290
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFI 373
+AFGMGID+ +VR V H+N+PK++E +YQE GRAGRD LPS ++L+Y D ++ +FI
Sbjct: 291 IAFGMGIDKSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLPSHTVLFYSYADTMQLRQFI 349
>gi|251787844|ref|YP_003002565.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
gi|247536465|gb|ACT05086.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
Length = 599
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/338 (46%), Positives = 221/338 (65%), Gaps = 13/338 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 4 MQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+ G+A L+STQ+ + + ++ G+ L+LLY+ PE T GF
Sbjct: 64 LISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFSACRRGE--LKLLYIAPERLTTDGF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L ++ L+AIDEAHCIS WGHDFRP YR L ++ P +PI+ALTATA
Sbjct: 122 LDQLAHWNT----ALIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVALTATADET 177
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+ L L++PL SSF+RPN+ Y + ++K L L ++ IVY
Sbjct: 178 TRQDIARLLDLRDPLTNISSFDRPNIRYTLVEKFKPL-----DQLWLFIQGQRGKSGIVY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++L A L G+S AYHAGL + R+ V + ++ QVVVATVAFGMGI++
Sbjct: 233 CNSRAKVEDLCARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFGMGINK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y
Sbjct: 293 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFY 330
>gi|261195180|ref|XP_002623994.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
gi|239587866|gb|EEQ70509.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
Length = 1562
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 9/363 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 685 LRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSGKTKGVTVVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LME+QV L++ I L+ + + K +IY L + ++LLYVTPE+
Sbjct: 745 PLLSLMEDQVAHLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLIQLLYVTPEMVNK 804
Query: 144 PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTAT
Sbjct: 805 NGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTKFPGIPLMALTAT 864
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A V+ DV+ +L + + V SFNRPNL YEVR K + A + +K +
Sbjct: 865 ATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKGTNVVASIAETIKGSYSGKAG 924
Query: 262 IVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +C+ ++ L I YHAGL R S+ DW + V+VAT+AFGM
Sbjct: 925 IIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATIAFGM 984
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 985 GIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIRHMIDKGEGS 1044
Query: 381 NSQ 383
+ Q
Sbjct: 1045 SEQ 1047
>gi|160882388|ref|ZP_02063391.1| hypothetical protein BACOVA_00337 [Bacteroides ovatus ATCC 8483]
gi|156112201|gb|EDO13946.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus ATCC 8483]
Length = 749
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 30 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 89
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 90 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 146
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 147 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 202
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 203 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 260
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 261 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 320
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 321 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 370
>gi|374597031|ref|ZP_09670035.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
gi|373871670|gb|EHQ03668.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
Length = 732
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 222/355 (62%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q I ++++G + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKQLKKYFGFSQFKGLQEQVITSIVNGHNTFVIMPTGGGKSLCYQLPALIAEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +V+ ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRGISSEHGVAHVLNSSLNKSEVR-QVKEDITNG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LT
Sbjct: 125 TKEENVEFLRSVK----ISFMAVDEAHCISEWGHDFRPEYRNLRTIIKRIGDNIPIIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YE+R K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGIPDAKTFKASFNRPNLYYEIRPK--TKNVDADIIRFVKQNEGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K R D +I VVVAT+AFGM
Sbjct: 239 GIIYCLSRKRVEELAQTLQVNGIKAVPYHAGLDPKTRIRHQDMFIMEDTDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMS 353
>gi|408370738|ref|ZP_11168512.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
gi|407743730|gb|EKF55303.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
Length = 733
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 221/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKEYFGFSQFKGLQEKVIKSIVNDHNTFVIMPTGGGKSLCYQLPALVKEGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ KGIA SS +++ ++ ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNKGIAHVLNSSLNKSEIR-QVKEDITSG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ + + ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ALTATA
Sbjct: 129 YIEFFRTVK----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIQRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
KVQ+D++++L + V K+SFNRPNL+YEVR K + D+ +K N I+Y
Sbjct: 185 EKVQEDILKNLGIGKANVFKASFNRPNLYYEVRPK--TKNVDVDIIRFVKQNTGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQTLEVNGIKAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS 353
>gi|259906892|ref|YP_002647248.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae Ep1/96]
gi|387869602|ref|YP_005800972.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
gi|224962514|emb|CAX53969.1| ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283476685|emb|CAY72514.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
Length = 610
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 231/379 (60%), Gaps = 13/379 (3%)
Query: 24 EALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+ L
Sbjct: 10 EALAGQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L G+A L+STQ + + + SG ++RLLY+ PE
Sbjct: 70 VVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSG--TVRLLYIAPERLM 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTAT
Sbjct: 128 MDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A + D+ L L +PL+ SSF+RPN+ Y + K L ++ C I
Sbjct: 184 ADETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMGI
Sbjct: 241 IYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCLEEKTQ 357
Query: 383 QSFSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 358 GPLQDIERHKLNAMGAFAE 376
>gi|429083282|ref|ZP_19146326.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
gi|426547898|emb|CCJ72367.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
Length = 609
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 223/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L + L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDNLTYWN----LTMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|298480171|ref|ZP_06998369.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
gi|298273452|gb|EFI15015.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
Length = 726
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|349580478|dbj|GAA25638.1| K7_Sgs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1447
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|383114099|ref|ZP_09934864.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|423294544|ref|ZP_17272671.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
gi|313694193|gb|EFS31028.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|392675735|gb|EIY69176.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
Length = 726
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|239610645|gb|EEQ87632.1| RecQ family helicase MusN [Ajellomyces dermatitidis ER-3]
gi|327348921|gb|EGE77778.1| RecQ family helicase MusN [Ajellomyces dermatitidis ATCC 18188]
Length = 1562
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 9/363 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 685 LRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSGKTKGVTVVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LME+QV L++ I L+ + + K +IY L + ++LLYVTPE+
Sbjct: 745 PLLSLMEDQVAHLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLIQLLYVTPEMVNK 804
Query: 144 PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTAT
Sbjct: 805 NGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTKFPGIPLMALTAT 864
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A V+ DV+ +L + + V SFNRPNL YEVR K + A + +K +
Sbjct: 865 ATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKGTNVVASIAETIKGSYSGKAG 924
Query: 262 IVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +C+ ++ L I YHAGL R S+ DW + V+VAT+AFGM
Sbjct: 925 IIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATIAFGM 984
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 985 GIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIRHMIDKGEGS 1044
Query: 381 NSQ 383
+ Q
Sbjct: 1045 SEQ 1047
>gi|225448193|ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis
vinifera]
Length = 1224
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/465 (37%), Positives = 261/465 (56%), Gaps = 33/465 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 423 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQD 482
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I +LS++ + +I +L S K +LLY TPE A M L
Sbjct: 483 QIMHLLQANIPAAYLSASMEWNEQQEILRELSSCK--YKLLYATPEKVAKSDVLMRNLDN 540
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+R LL+ + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 541 LHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 600
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + + LDD + ++ N D C I+YCL R
Sbjct: 601 QALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDD----IDKFIRENHFDECGIIYCLSRL 656
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 657 DCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 716
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ ++++ + S S +
Sbjct: 717 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQN 776
Query: 390 RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
RS +++ ++L+ + R++ DV L LV H ++ +
Sbjct: 777 RS---NMASSGRILETNTENLLRMVSYCENDV----DCRRLLQLV------HFGEKFDSA 823
Query: 450 LCKNSCDAC--------KHPNLLAKYLGELTSAVLQKNHFSQIFI 486
CK +CD C K +AK L EL L + FS I
Sbjct: 824 HCKKTCDNCLKIKSFVEKDVTEIAKQLVELVK--LTREQFSSSHI 866
>gi|407035712|gb|EKE37810.1| recQ family helicase, putative [Entamoeba nuttalli P19]
Length = 774
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 226/371 (60%), Gaps = 9/371 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H KE + ++L F H R Q I A+L+G + LMPTGGGKS+CYQ+P+L K G
Sbjct: 367 FHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKDG 426
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
LVVSPLI+LM++QV L + GI +S + I D+++ K ++++YV PE
Sbjct: 427 YTLVVSPLISLMQDQVKALNDLGIPAITCNSNNPENIDIFI-NDIETRK--IKIVYVAPE 483
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
L + M++ +KK++ RGL + + IDEAHCIS WGHDFR SY +L R P V +
Sbjct: 484 LLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSVQTIL 543
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +V+ D++ S+ L+ +V +FNRPNL YE R K D+ ++ + +
Sbjct: 544 FTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKS--PKVEVDIAHYIQQHPN 601
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IV+CL + C+ LS +L GI YHAGL+ K R V +DW++ VV ATVAF
Sbjct: 602 QCGIVFCLSKKDCESLSKFLVNYGIRATHYHAGLDAKRRKKVQNDWMNGTFLVVCATVAF 661
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI---LS 375
GMGID+ DVR V H +P S+E ++QE+GRAGRD PS ++Y+ M D R+E++ +
Sbjct: 662 GMGIDKPDVRFVIHQTMPSSIEQYFQEAGRAGRDGKPSDCIIYFNMKDISRVEWLKRDMG 721
Query: 376 KNQSKNSQSFS 386
KN+ +SQ S
Sbjct: 722 KNELTSSQQQS 732
>gi|237719061|ref|ZP_04549542.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|293369500|ref|ZP_06616079.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|299148144|ref|ZP_07041206.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_23]
gi|336415756|ref|ZP_08596095.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|423292370|ref|ZP_17270948.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
gi|229451440|gb|EEO57231.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|292635385|gb|EFF53898.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|298512905|gb|EFI36792.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_23]
gi|335940635|gb|EGN02502.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|392661779|gb|EIY55352.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
Length = 726
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|154248226|ref|YP_001419184.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
gi|154162311|gb|ABS69527.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
Length = 607
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 220/352 (62%), Gaps = 10/352 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ FR Q + ++ V +G D LMPTGGGKS+CYQ+PAL +PG +VVSP
Sbjct: 13 LRVLRHVFGYEAFRGHQKEIVEHVAAGGDALVLMPTGGGKSLCYQVPALVRPGTAIVVSP 72
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM +QV L++ G+ L+S+ ++ L G L LLYV PE T F
Sbjct: 73 LIALMHDQVQALRQLGVKAAMLNSSLAPGEARQVERALAMG--DLDLLYVAPERLLTDSF 130
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L ++L AIDEAHC+S WGHDFRP YR+L+ L P VP LALTATA
Sbjct: 131 LTLLDGAR----ISLFAIDEAHCVSQWGHDFRPEYRQLTILHERFPGVPRLALTATADGP 186
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++++ME L L+ V SSF+RPN+ Y + K + A L + L A+ D IVYC+
Sbjct: 187 TRREIMERLALEEGRVFLSSFDRPNIRYRIEPKA---NPRAQLRAFLDAHADEAGIVYCM 243
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + + LS G + YHAGL+ R+ D ++ V+VATVAFGMGID+ D
Sbjct: 244 SRAKVEATAEILSTEGRTALPYHAGLDADTRARHQDRFLKEEGVVMVATVAFGMGIDKPD 303
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSKN 377
VR V H ++PKS+EA+YQE+GRAGRD LPS++LL YG++D ++ +F+ S +
Sbjct: 304 VRFVVHLDLPKSIEAYYQETGRAGRDGLPSEALLLYGVEDVAKLIQFVESSD 355
>gi|108864716|gb|ABA95537.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|215701406|dbj|BAG92830.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 665
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/324 (48%), Positives = 213/324 (65%), Gaps = 6/324 (1%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110
+SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI L+S
Sbjct: 1 MSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLAS 60
Query: 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169
T +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AIDEAHC
Sbjct: 61 TTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHC 120
Query: 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR 229
S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S+ NR
Sbjct: 121 CSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINR 180
Query: 230 PNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285
PNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS GI
Sbjct: 181 PNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSERGILA 239
Query: 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345
YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME +YQE
Sbjct: 240 DYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQE 299
Query: 346 SGRAGRDQLPSKSLLYYGMDDRRR 369
SGRAGRD LPS+ +LYY D R
Sbjct: 300 SGRAGRDGLPSECILYYRPGDVPR 323
>gi|19114004|ref|NP_593092.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe 972h-]
gi|1175484|sp|Q09811.1|HUS2_SCHPO RecName: Full=ATP-dependent DNA helicase hus2/rqh1
gi|1019410|emb|CAA91177.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe]
gi|1684754|emb|CAA70577.1| DNA-helicase [Schizosaccharomyces pombe]
Length = 1328
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 245/402 (60%), Gaps = 25/402 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVS 85
L+ F FR QL+AI LSG+D F LMPTGGGKS+CYQ+PA+ A G+ LV+S
Sbjct: 511 LKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVIS 570
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++Q+ L++ I LS Q + ++ L + ++LLYVTPE A+ G
Sbjct: 571 PLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNG 630
Query: 146 FMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+ +P +ALTATA
Sbjct: 631 AITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATAN 690
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--DTCAI 262
V+KD++ +L ++N L LKSSFNRPNLFYE++ K D Y +L + +NG I
Sbjct: 691 EIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK---KDLYTELYRFI-SNGHLHESGI 746
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+YCL RT+C++++A L G+ YHAGL R + ++W S +++VAT+AFGMG
Sbjct: 747 IYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMG 806
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + I+S +
Sbjct: 807 VDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDA 866
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRV 413
++ R+R + + F QVL G+ F +V
Sbjct: 867 ETKE---RQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKV 905
>gi|302832866|ref|XP_002947997.1| hypothetical protein VOLCADRAFT_57553 [Volvox carteri f.
nagariensis]
gi|300266799|gb|EFJ50985.1| hypothetical protein VOLCADRAFT_57553 [Volvox carteri f.
nagariensis]
Length = 646
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 223/352 (63%), Gaps = 14/352 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +FR Q + + A L GRD CL+P+GGGKS+CYQ+PAL PG+ LVVSPL++L+++
Sbjct: 48 FGLREFRALQREVMNAALQGRDVLCLLPSGGGKSLCYQLPALVSPGLTLVVSPLLSLIQD 107
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+ L+ I G L+S + + ++Y ++ G+ L+LLYVTPE + ++ FMSKL+K
Sbjct: 108 QVLSLRALSINGSCLTSLSSKEEVAEVYGKMERGE--LKLLYVTPEKIVSSKRFMSKLEK 165
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H G L+ +AIDEAHC S+WG+DFRP Y+KL L+ P VPI+ALTATA +V KD+
Sbjct: 166 VHQGGRLDRIAIDEAHCASAWGNDFRPDYKKLGVLKQQFPQVPIIALTATATHQVCKDLK 225
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK----ANGDTCAIVYCLER 268
L +Q ++S NRPNLFYEV K G++ IVYCL R
Sbjct: 226 SILRIQGCEFFRASVNRPNLFYEVLPKPAAAADAIAAIVAWIHRHYPRGES-GIVYCLTR 284
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C+ +++ L+AGG+S YHA + R + W + + QV+VATVAFGMGI++ DVR
Sbjct: 285 KDCETVASELAAGGVSARHYHADMEPGPREAAHAAWSAGKVQVMVATVAFGMGINKPDVR 344
Query: 329 LVCHFNIPKSMEAFYQ------ESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
V H ++ KS+E +YQ ESGRAGRD LP++ L++Y D R I+
Sbjct: 345 FVVHHSLSKSLENYYQAGSRLIESGRAGRDGLPARCLMFYRFSDALRQAAIV 396
>gi|347761952|ref|YP_004869513.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580922|dbj|BAK85143.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 611
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 224/350 (64%), Gaps = 9/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSELEADEAARVRSDLVAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P VP +ALTATA + + D++E
Sbjct: 137 ----TLSVIAIDEAHCISAWGHEFRPEYRELAALPQHFPHVPRIALTATADARTRSDILE 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L ++L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVRPKT---SELRQLTAILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G + +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 VARSLAGKGYAALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + ++Q
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGEQAETVLLYGGDDMARARYWLEQSNAPDAQ 359
>gi|151945893|gb|EDN64125.1| Nucleolar DNA helicase of the RecQ family involved in maintenance of
genome integrity [Saccharomyces cerevisiae YJM789]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|167761544|ref|ZP_02433671.1| hypothetical protein CLOSCI_03955 [Clostridium scindens ATCC 35704]
gi|336422640|ref|ZP_08602783.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium
5_1_57FAA]
gi|167661210|gb|EDS05340.1| ATP-dependent DNA helicase RecQ [Clostridium scindens ATCC 35704]
gi|336007813|gb|EGN37834.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium
5_1_57FAA]
Length = 622
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 229/372 (61%), Gaps = 14/372 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ KLL+ +FG+ FR+ Q I+AVLSGRD +MPTG GKSMC+QIPAL GI L
Sbjct: 3 KKTAEKLLKQYFGYDGFREGQEQLIEAVLSGRDVLGIMPTGAGKSMCFQIPALMMEGITL 62
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L + GI FL+S+ ++ K G+ +++YV PE
Sbjct: 63 VISPLISLMKDQVGALNQAGIHAAFLNSSLSVGQYAKALAYAREGR--YKIIYVAPERLE 120
Query: 143 TPGFMSKLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALT 200
T GF L + S G+ ++ +A+DEAHC+S WG DFRPSY K+ LP P++ A T
Sbjct: 121 TQGF---LDFVMSEGIKISFLAVDEAHCVSQWGQDFRPSYLKILDFLKKLPYRPVIGAYT 177
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL----KAN 256
ATA V+ D+M+ L LQ+P V+ + F+R NL++ VR K + D Y +L S + K
Sbjct: 178 ATATTGVRDDIMDILQLQDPSVITTGFDRENLYFAVR-KPV--DKYKELVSYIRRKEKEM 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ IVYCL R +++ L G S YHAGL+D R DD+I R+Q++VAT
Sbjct: 235 PGSSGIVYCLTRKNVEDVCYNLRKEGFSVTRYHAGLSDMERKENQDDFIYDRRQIMVATN 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+N+PK+ME++YQE+GRAGRD PS +LYY D R F +
Sbjct: 295 AFGMGIDKSDVRFVIHYNMPKNMESYYQEAGRAGRDGEPSDCILYYEPMDVRTNRFFIEN 354
Query: 377 NQSKNSQSFSTR 388
N+ + TR
Sbjct: 355 NEDNEALDEITR 366
>gi|431796165|ref|YP_007223069.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786930|gb|AGA77059.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 708
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/339 (44%), Positives = 219/339 (64%), Gaps = 7/339 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +G+ FR +Q IQ++L +D LMPTGGGKS+CYQIPA+ G+ LV+SPL
Sbjct: 6 EVLKNFYGYDSFRGQQEAIIQSILKQQDTIVLMPTGGGKSVCYQIPAMVNDGLTLVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV L GI +L+S+Q+ + + E++ SGK L+LLYV PE F
Sbjct: 66 IALMKDQVDALNGMGIPAAYLNSSQSASEQRFVSEEIRSGK--LKLLYVAPERLFGGAF- 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+LVAIDEAHC+S WGHDFRP Y + LR LPDVP +ALTATA +
Sbjct: 123 -PLTETLKTSRLSLVAIDEAHCVSQWGHDFRPDYLMIGRLRQELPDVPFVALTATADKQT 181
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ + L L+ P SSF+RPN+ Y + K +++ L L+ + I+YCL
Sbjct: 182 RADIADKLGLRKPKWFISSFDRPNITYRIVPKR---NSFEKLLDFLEYHQKNSGIIYCLS 238
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++++ L A G+S YHAGL+ + R+S + +I + +++VAT+AFGMGID+ +V
Sbjct: 239 RKNVEDMAGRLQAAGLSALPYHAGLDRQTRASHQEKFIKDKVKIMVATIAFGMGIDKSNV 298
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
R V H N+P+++E +YQE+GRAGRD LPS +LL+Y D
Sbjct: 299 RFVVHMNMPQNIEGYYQETGRAGRDGLPSDALLFYSYAD 337
>gi|383316443|ref|YP_005377285.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
gi|379043547|gb|AFC85603.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
Length = 602
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 228/362 (62%), Gaps = 9/362 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR +Q ++ V G D LMPTGGGKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 8 ILQSVFGYTAFRGQQQAVVEHVAEGGDALVLMPTGGGKSLCYQVPALLRSGLGVVVSPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L++ G+A +L+S+ + + + + SG+ L+LLYV PE +P ++
Sbjct: 68 ALMQDQVDALRQLGVAAAYLNSSLDAEAQRAVERQMMSGE--LQLLYVAPERLLSPRLLA 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L++I + L AIDEAHC+S WGHDFRP YR+L+ L+ P VP +ALTATA P+ +
Sbjct: 126 MLERIE----IALFAIDEAHCVSQWGHDFRPEYRELAELQRRFPQVPRIALTATADPRTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
++++E L LQ SSF+RPN+ Y V + L + L + ++YCL R
Sbjct: 182 EEIIERLGLQQARQFLSSFDRPNIRYRVGQRQ---QGRKQLEAFLADHRGDSGVIYCLSR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE + +L A G + AYHAGL RS ++ V+VATVAFGMGID+ DVR
Sbjct: 239 KKVDETAGWLQAMGFNALAYHAGLEAALRSEHQQRFLREDGVVMVATVAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++P+S+E +YQE+GRAGRD LP+ + + YG++D M ++++++S + + R
Sbjct: 299 FVAHLDLPRSIEGYYQETGRAGRDGLPADAWMVYGLNDVVTMSQMIAQSESADDRKRIER 358
Query: 389 ER 390
++
Sbjct: 359 QK 360
>gi|67468457|ref|XP_650264.1| recQ family helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466865|gb|EAL44882.1| recQ family helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710010|gb|EMD49159.1| recQ family helicase [Entamoeba histolytica KU27]
Length = 774
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/371 (42%), Positives = 226/371 (60%), Gaps = 7/371 (1%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H KE + ++L F H R Q I A+L+G + LMPTGGGKS+CYQ+P+L K G
Sbjct: 367 FHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKDG 426
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
LVVSPLI+LM++QV L + GI +S + I D+++ K ++++YV PE
Sbjct: 427 YTLVVSPLISLMQDQVKALNDLGIPAITCNSNNPENIDIFI-NDIETRK--IKIVYVAPE 483
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
L + M++ +KK++ RGL + + IDEAHCIS WGHDFR SY +L R P V +
Sbjct: 484 LLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSVQTIL 543
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +V+ D++ S+ L+ +V +FNRPNL YE R K D+ ++ + +
Sbjct: 544 FTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKS--PKVEVDIAHYIQQHPN 601
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IV+CL + C+ LS +L GI YHAGL+ K R V +DW++ VV ATVAF
Sbjct: 602 QCGIVFCLSKKDCESLSKFLINYGIRATHYHAGLDAKRRKKVQNDWMNGTFLVVCATVAF 661
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +P S+E ++QESGRAGRD PS ++Y+ M D R+E+ L ++
Sbjct: 662 GMGIDKPDVRFVIHQTMPSSIEQYFQESGRAGRDGKPSDCIIYFSMKDIARVEW-LKRDM 720
Query: 379 SKNSQSFSTRE 389
KN + S ++
Sbjct: 721 GKNELTASQQQ 731
>gi|256271606|gb|EEU06648.1| Sgs1p [Saccharomyces cerevisiae JAY291]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|6323844|ref|NP_013915.1| Sgs1p [Saccharomyces cerevisiae S288c]
gi|464912|sp|P35187.1|SGS1_YEAST RecName: Full=ATP-dependent helicase SGS1; AltName: Full=Helicase
TPS1
gi|349194|gb|AAA35167.1| bps. 390..881 = homology to E.coli recQ; bps. 414..430 = ATP binding
site [Saccharomyces cerevisiae]
gi|642282|emb|CAA87811.1| Tps1p [Saccharomyces cerevisiae]
gi|726279|gb|AAB60289.1| Sgs1p [Saccharomyces cerevisiae]
gi|285814193|tpg|DAA10088.1| TPA: Sgs1p [Saccharomyces cerevisiae S288c]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|363580415|ref|ZP_09313225.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 728
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 216/355 (60%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QFR Q I+++L D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 6 LQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS V + D+ +G +LLYV PE
Sbjct: 66 PLIALMKNQVDAIRSISSENGIAHVLNSSLNKTDV-ANVKMDISNG--VTKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LT
Sbjct: 123 VKEEYAEFL----ASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIKGIGDNIPIIGLT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNLFYEVR K + D+ +K N +
Sbjct: 179 ATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTA--NVETDIIRFVKQNSEKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 237 GIIYCLSRKKVEELAQALQVNGIIAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H++IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 297 GIDKPDVRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMS 351
>gi|410080512|ref|XP_003957836.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
gi|372464423|emb|CCF58701.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
Length = 873
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/364 (43%), Positives = 224/364 (61%), Gaps = 7/364 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV---- 81
LV L+ F FR QL AI A LSG D F LMPTGGGKS+CYQ+P++ + G+
Sbjct: 220 LVYKLQNVFKLPNFRSDQLSAINATLSGDDVFILMPTGGGKSLCYQLPSIIRSGVTCGTT 279
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
+V+SPLI+LM++Q+ L + I +SS + + + +G L LLY++PE L
Sbjct: 280 IVISPLISLMQDQIDHLLQLNIKACSISSKLSTSQRNFYFSLFANG--DLDLLYISPEML 337
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
TA+ F + L K+H L +A+DEAHC+S+WGHDFRP Y+ L R PD+PI+ALT
Sbjct: 338 TASKKFKTTLDKLHKSRKLARIAVDEAHCLSNWGHDFRPDYKNLDYFRINYPDIPIVALT 397
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA VQ D++ +L L PLVLK SFNR NLFYEV KD +L
Sbjct: 398 ATANNLVQDDIIRNLRLGRPLVLKQSFNRNNLFYEVLPKDKKIVTSQIASYILNDFKSQS 457
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC + TC+++S L+ G+ + YHAG+ +K R V W S+R QV+ ATVAFGM
Sbjct: 458 GIVYCHSKDTCEKVSMALTQMGVKASFYHAGMTNKQRDHVQKLWQSNRYQVICATVAFGM 517
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+ +P+S+E +YQE+GRAGRD S + +Y +D R ++ ++ ++
Sbjct: 518 GIDKADVRFVIHYTVPRSLEGYYQETGRAGRDGNFSYCITFYSFNDVRSLQKLIQTDKGL 577
Query: 381 NSQS 384
N ++
Sbjct: 578 NKEN 581
>gi|357054028|ref|ZP_09115119.1| ATP-dependent DNA helicase RecQ [Clostridium clostridioforme
2_1_49FAA]
gi|355384913|gb|EHG31966.1| ATP-dependent DNA helicase RecQ [Clostridium clostridioforme
2_1_49FAA]
Length = 627
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/363 (42%), Positives = 227/363 (62%), Gaps = 8/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q IQ +L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 5 EILKHYFGYDTFRDGQDVLIQNILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +++S+ T K+ + +G+ ++YV PE + F+
Sbjct: 65 ISLMKDQVSSLNQVGILAAYINSSLTAAQYYKVLDLARAGR--YPIIYVAPERLMSEDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ + +++VA+DEAHC+S WG DFRPSY K+ N LPD P++ A TATA +
Sbjct: 123 RF--ALSGQVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPDRPVVSAFTATATAQ 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + FNRPNL++ V+ D YA + + L+ + I+YCL
Sbjct: 181 VRDDIIDILMLRNPQVMTTGFNRPNLYFAVQSPK---DKYATMVNYLERHKGESGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ + L G S YHAGL+D +D+I R Q++VAT AFGMGID+ +
Sbjct: 238 TRKVVEEVCSQLIREGFSVTRYHAGLSDSEHRHNQEDFIYDRAQIMVATNAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 298 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPV 357
Query: 387 TRE 389
TRE
Sbjct: 358 TRE 360
>gi|323307639|gb|EGA60904.1| Sgs1p [Saccharomyces cerevisiae FostersO]
Length = 1396
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|393241346|gb|EJD48868.1| ATP-dependent DNA helicase [Auricularia delicata TFB-10046 SS5]
Length = 852
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/357 (44%), Positives = 213/357 (59%), Gaps = 18/357 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSP 86
++L FG+ FR KQ + +QA + G D +MPTG GKS+C+QIPA+A G+ LVVSP
Sbjct: 50 RVLTKTFGYESFRGKQKEIVQAAVRGNDVLVVMPTGMGKSLCFQIPAIADTHGVSLVVSP 109
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM+NQV L++ + + + ++ +I DL SG P RLLY+TPE + P F
Sbjct: 110 LLALMKNQVKRLEQLQVPVQSWTGETPEHMRQEIIRDLQSGHPRTRLLYITPESMSRPQF 169
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
LK ++ + LN +DEAHCIS WGHDFR YRKL + R PDVPI+ALTA+A P
Sbjct: 170 RGVLKVVYQQNELNRFVVDEAHCISEWGHDFREEYRKLGNFRQMFPDVPIMALTASATPY 229
Query: 207 VQKDVMESLCLQNP--LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL--------KAN 256
V++D++ SL ++N L + FNR NLFYE+RY D A + V K
Sbjct: 230 VREDIIRSLGMENDQLLTVVHPFNRHNLFYEIRYMPSTWDQEAQMKHVQEYIQKLHDKRG 289
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK------- 309
+ ++YC +R TC+EL+A+L GI+ YH GL L W +
Sbjct: 290 CPSSGLIYCRKRDTCNELAAFLRKKGINAKPYHKGLGAATLDLTLRQWEETTDGQGAGAV 349
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V V TVAFGMGID+ DVR V HF++PKS E +YQE+GRAGRD +K +LYY D
Sbjct: 350 DVAVCTVAFGMGIDKPDVRYVIHFDLPKSFEGYYQETGRAGRDGNSAKCILYYSRKD 406
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 233/370 (62%), Gaps = 27/370 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 28 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 87
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK E+ L++LY+ PE P
Sbjct: 88 SLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLEN------RLKVLYIAPERLMMP 141
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR---NYLPDVPILALTA 201
G + LKK G ++L AIDEAHCIS WGHDFRP YRKL LR N PDVP++ALTA
Sbjct: 142 GTFAFLKK----GKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTA 197
Query: 202 TAAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
TA +V+KD++ L L + P V +SFNR NL+YEVR K D ++++ L +
Sbjct: 198 TATERVKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRPKK---DTFSEITDYLLRH 252
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+
Sbjct: 253 RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATI 312
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 313 AFGMGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQ 372
Query: 377 NQSKNSQSFS 386
++ + S
Sbjct: 373 KTNEKEKDIS 382
>gi|198276172|ref|ZP_03208703.1| hypothetical protein BACPLE_02361 [Bacteroides plebeius DSM 17135]
gi|198270984|gb|EDY95254.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 727
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 220/350 (62%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
LV L+ +FG F+ Q I+ +LSG+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LVAALKKYFGFDTFKGNQEAIIRNLLSGKDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ T ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLTKSATDQVKADIMAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRHVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKV+ D+ ++L + + +SSFNRPNL+YEVR K D D+ +K N
Sbjct: 180 TATPKVKMDIQKNLGMMDATEFRSSFNRPNLYYEVRAKSANVDK--DIIKFIKQNEGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI AYHAG++ R+ D ++ V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELTEILLANGIKARAYHAGMDSATRNGNQDAFLKEDIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE 347
>gi|260596045|ref|YP_003208616.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis z3032]
gi|260215222|emb|CBA27089.1| ATP-dependent DNA helicase recQ [Cronobacter turicensis z3032]
Length = 635
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 229/365 (62%), Gaps = 14/365 (3%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
+K +P+ + + ++ +E L K +L+ FG+ QFR Q I AVL GRDC +
Sbjct: 13 LKIAPVLFSVSGVSVAQAEVYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVV 72
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKS+CYQIPAL K G+ +VVSPLI+LM++QV L G+A L+STQ+ +
Sbjct: 73 MPTGGGKSLCYQIPALVKTGLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQHA 132
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ +G+ +RLLY+ PE F+ L L +VA+DEAHCIS WGHDFRP
Sbjct: 133 VMAGCRTGE--VRLLYIAPERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRP 186
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--R 237
Y L LR P VP +ALTATA ++D++ L L +PL+ SSF+RPN+ Y + +
Sbjct: 187 EYAALGQLRARFPAVPFIALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEK 246
Query: 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+K L L ++ I+YC R ++ +A L + GIS AAYHAGL + R
Sbjct: 247 FKPL-----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVR 301
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
+SV + + Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++
Sbjct: 302 ASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 361
Query: 358 SLLYY 362
++L+Y
Sbjct: 362 AMLFY 366
>gi|323336083|gb|EGA77356.1| Sgs1p [Saccharomyces cerevisiae Vin13]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|190408415|gb|EDV11680.1| ATP-dependent helicase SGS1 [Saccharomyces cerevisiae RM11-1a]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|95930254|ref|ZP_01312992.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
gi|95133717|gb|EAT15378.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
Length = 598
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/339 (45%), Positives = 217/339 (64%), Gaps = 9/339 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ L+ FG +FR+ Q I+ +++G+DCF LMPTGGGKS+CYQIPAL + G+ +VVSPL
Sbjct: 5 QTLQNTFGFREFREPQQQIIETLIAGQDCFVLMPTGGGKSLCYQIPALHRQGVAIVVSPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G++ +S+ Q + L + L LLYV PE +P F+
Sbjct: 65 ISLMKDQVDALNANGVSAACYNSSLAAQEARDVLSQLH--RQQLDLLYVAPERLLSPDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L I + L+A+DEAHC+S WGHDFRP Y +L LR+ PD P++ALTATA +
Sbjct: 123 ERLHDIK----IALIAVDEAHCVSQWGHDFRPEYVQLGQLRDQFPDTPMIALTATADMQT 178
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++E L L + SSF+RPN+ Y V K L L + + IVY L
Sbjct: 179 RQDIVERLRLHHARKFISSFDRPNIRYTVVDKQ---KPIVQLEQFLDQHRNEAGIVYALS 235
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E++A L GI AAYHAGL D+ R V + ++ QVVVATVAFGMGID+ +V
Sbjct: 236 RKRVEEIAAKLVDRGIVAAAYHAGLPDRQRHEVQEAFLRDDIQVVVATVAFGMGIDKSNV 295
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
R V H+++PK++E++YQE+GRAGRD LP+++LL +G D
Sbjct: 296 RFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD 334
>gi|123494887|ref|XP_001326616.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121909533|gb|EAY14393.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 224/350 (64%), Gaps = 7/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F H+ FR +Q DAI A L+G D F LMPTGGGKS+CYQ+P + G+ +V+SPLI+L+++
Sbjct: 362 FKHSHFRGRQRDAIAAALNGEDVFVLMPTGGGKSLCYQLPGFIQMGVTIVISPLISLIQD 421
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKK 152
QV L E G+ T +I +++G+ LR L++TPE ++ +
Sbjct: 422 QVRSLTELGLDAMAYGQETTAADYNEIVRKINNGR--LRFLFMTPEKIMMGSINTRFIGS 479
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
I+ + L ID+AHC+S WGHDFRP Y +L L+ PD+PI+ALTATA VQ+D+
Sbjct: 480 IYEKKRLTRFVIDKAHCVSQWGHDFRPDYTQLGVLKTMYPDIPIMALTATATDAVQRDIK 539
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTT 270
E L ++N V KSSFNRPN+FYEV K+ +++ ++ +KA+G ++ I++C+
Sbjct: 540 EILNIRNCHVFKSSFNRPNIFYEVIQKE--ENSKDEMIRWIKAHGYENSTGIIFCMTTPE 597
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
LS Y++ G + A YH + + R V + W++++ +V+VAT+AFGMGID+ DVR V
Sbjct: 598 TVNLSQYMNTKGFNTAYYHGKMENADRKKVQEMWMNNQIRVIVATLAFGMGIDKPDVRYV 657
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
H +P+S+EA+YQESGRAGRD S LL++ M D+ R+ ++S +S+
Sbjct: 658 IHMTMPRSLEAYYQESGRAGRDGKQSHCLLFFSMGDKARVHRLISYTESE 707
>gi|91775306|ref|YP_545062.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91775450|ref|YP_545206.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709293|gb|ABE49221.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709437|gb|ABE49365.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|167042457|gb|ABZ07183.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 611
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 225/367 (61%), Gaps = 6/367 (1%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +LL FG++ FR +Q + V+ G D LMPTGGGKS+CYQIP+L +PG+ +VV
Sbjct: 6 AAQQLLEQTFGYSAFRGEQEAIVNHVVDGGDALVLMPTGGGKSLCYQIPSLLRPGVGIVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GI FL+S+ +Y+ L G+ L++LYV PE TP
Sbjct: 66 SPLIALMQDQVDALRQLGIQAAFLNSSLDADTARHVYQALMRGE--LKVLYVAPERLMTP 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+S L I R + L AIDEAHC+S WGHDFRP YR+L+ L P+VP +ALTATA
Sbjct: 124 SFLSTLHDIQQRFGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHEEFPEVPRIALTATAD 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIV 263
+ +++E L L++ SSF+RPN+ Y V K ++A L L++ + + I+
Sbjct: 184 TPTRNEIVERLGLEHARQFISSFDRPNIRYRVALK---NNARKQLLGFLESEHPNDAGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +E +A+L G YHAGL+ R + ++ ++VATVAFGMGID
Sbjct: 241 YCLSRRKVEETAAWLKEQGWDALPYHAGLDATVRQANQQRFLREEGIIMVATVAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H ++PKSME +YQE+GRAGRD L + + + YG+ D M +L + + +
Sbjct: 301 KPNVRFVVHLDLPKSMEGYYQETGRAGRDGLDADAWMVYGLGDVVNMRQLLDGSDTPEER 360
Query: 384 SFSTRER 390
R++
Sbjct: 361 KRLERQK 367
>gi|295133854|ref|YP_003584530.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981869|gb|ADF52334.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 702
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 227/362 (62%), Gaps = 11/362 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK+ L+ L+ +FG+ FR Q IQ++ G+D +MPTGGGKS+CYQ+PA+ P +
Sbjct: 2 EKQQLLNTLKEYFGYDSFRPLQEKIIQSIFDGKDNLVIMPTGGGKSICYQLPAILLPKLT 61
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPLIALM++QV GLK GI EFL+S+Q + + I++ +D K L+LLYV PE
Sbjct: 62 IVISPLIALMKDQVDGLKANGIKAEFLNSSQQVADQESIFQKID--KNELKLLYVAPE-- 117
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L + + ++L+AIDEAHCISSWGHDFRP+Y +L L+ + PI+ALTA
Sbjct: 118 ----SLQILDRFLTEENISLIAIDEAHCISSWGHDFRPAYTQLGYLKKRFSNTPIIALTA 173
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ + L + + SSF+R NL EVR + + +K+
Sbjct: 174 TADKATRHDICQQLNIPDAKKHISSFDRKNLSLEVRQGI---KRFEQIIKFIKSRPSESG 230
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L G+ AYHAGL + R S+ DD+I+ + +++ ATVAFGMG
Sbjct: 231 IIYCLSRKNTEELAEKLQQKGLDAKAYHAGLKHEERESIQDDFINDKTEIICATVAFGMG 290
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ ++R V H+N+PK++E +YQE GRAGRD L S +LL++ D +++ ++K+
Sbjct: 291 IDKSNIRWVIHYNMPKNLEGYYQEIGRAGRDGLSSDTLLFHSYADVVQLQRFAENTKNKD 350
Query: 382 SQ 383
Q
Sbjct: 351 IQ 352
>gi|365763903|gb|EHN05429.1| Sgs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1314
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|392297356|gb|EIW08456.1| Sgs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1341
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 561 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 620
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 621 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 678
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 679 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 738
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 739 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 796
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 797 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 856
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 857 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 915
>gi|302767148|ref|XP_002966994.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
gi|300164985|gb|EFJ31593.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
Length = 901
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 169/377 (44%), Positives = 236/377 (62%), Gaps = 26/377 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG++ FR Q + IQ +L GRDC +M TG GKS+CYQIP L +V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV+GLK +GI E+L S QT K ED +G+ +LY+TPE
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQT----DKTVED-KAGRGEYDILYMTPEKACGTT 115
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ S L SRG+ +L+A+DEAHCIS WGHDFRP Y++LSS+R+ LP+VP +ALTATA
Sbjct: 116 WTSLL----SRGV-SLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATH 170
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV----RYKDLLDDAYADLCSVLKANGDTCA 261
KV++D+++SL L+N + SSF+R N+FY V R ++ ++ L+ G T
Sbjct: 171 KVREDILKSLMLKNAYIAVSSFDRSNIFYGVKPLTRSNAFREELATEVVKDLEQGGST-- 228
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC DE++ L G + AYH+ L K R+ V ++ QVVVATVAFGMG
Sbjct: 229 IVYCNTIKDVDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMG 288
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ D+R V H+ PKS+E++YQESGR GRD LPS LY+ D R E+ S+
Sbjct: 289 IDKPDIRRVIHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEYYTSE----- 343
Query: 382 SQSFSTRERSSKKSISD 398
T+ER KK+++D
Sbjct: 344 ---VRTQER--KKAVAD 355
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 235/376 (62%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTEGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NPL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|188532380|ref|YP_001906177.1| ATP-dependent DNA helicase RecQ [Erwinia tasmaniensis Et1/99]
gi|188027422|emb|CAO95269.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99]
Length = 610
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/340 (46%), Positives = 218/340 (64%), Gaps = 10/340 (2%)
Query: 24 EALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+ L
Sbjct: 10 EALADQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L G+A L+STQ + + + SGK +RLLY+ PE
Sbjct: 70 VVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGK--VRLLYIAPERLM 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTAT
Sbjct: 128 MDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A + D+ L L +PL+ SSF+RPN+ Y + K L ++ C I
Sbjct: 184 ADDTTRNDIARLLQLDDPLIQVSSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMGI
Sbjct: 241 IYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNVHRARVQEAFQRDDLQIVVATVAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y
Sbjct: 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLY 340
>gi|367004206|ref|XP_003686836.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
gi|357525138|emb|CCE64402.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
Length = 1355
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/429 (37%), Positives = 248/429 (57%), Gaps = 40/429 (9%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR Q DA+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G +VVSPLI+LM++Q
Sbjct: 601 FRPNQEDAVNATLSGKDVFVLMPTGGGKSLCYQLPAIIKSGNTKGTTIVVSPLISLMQDQ 660
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L K I SS T + + + G L L+Y++PE+ +A+ + K+
Sbjct: 661 VDHLLAKNIKASMFSSKGTADQRRQTFNLFIHG--LLDLIYISPEMISASEQCKRAIAKL 718
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H G L + +DEAHC+S+WGHDFRP Y++L + P++P++ALTATA+ +V+ D++
Sbjct: 719 HEDGNLARIVVDEAHCVSNWGHDFRPDYKELKFFKGEYPNIPMMALTATASEQVRMDIIH 778
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L++P+ LK SFNR NL+YE+ + K+ + + D+ + + I+YC + +C
Sbjct: 779 NLKLKDPVFLKQSFNRTNLYYEIIKKSKNTIFEMSDDIKRRFR---NQTGIIYCHSKNSC 835
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++ SA + GI CA YHAG+ R V W + QV+ ATVAFGMGID+ DVR V
Sbjct: 836 EQTSAQMERAGIKCAYYHAGMEPDDRLKVQKAWQADEVQVICATVAFGMGIDKPDVRFVY 895
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF +P+++E +YQE+GRAGRD S + YY D R ++ ++ K+++ + + +
Sbjct: 896 HFTVPRTLEGYYQETGRAGRDGKFSYCITYYSFKDVRTIQTMIQKDENLDRE-------N 948
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
+K ++ QV+ Y D LVL Y++ +Q LC
Sbjct: 949 KEKHLNKLQQVM-------------AYCDNV----TDCRRKLVLSYFN----EQFDSKLC 987
Query: 452 KNSCDACKH 460
K +CD C++
Sbjct: 988 KKNCDNCRN 996
>gi|262408128|ref|ZP_06084675.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|294645124|ref|ZP_06722849.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294809724|ref|ZP_06768411.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|336403758|ref|ZP_08584467.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|345508918|ref|ZP_08788536.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|229447212|gb|EEO53003.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|262353680|gb|EEZ02773.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|292639548|gb|EFF57841.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294443058|gb|EFG11838.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|335945112|gb|EGN06928.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
Length = 726
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 221/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIIYNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE 347
>gi|259148775|emb|CAY82020.1| Sgs1p [Saccharomyces cerevisiae EC1118]
Length = 1447
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|326336566|ref|ZP_08202735.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691231|gb|EGD33201.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 730
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/358 (44%), Positives = 229/358 (63%), Gaps = 17/358 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG F+ KQ + I +++ F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 9 LQKALKSIFGFNAFKGKQEEIITSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G+ +LLYV PE
Sbjct: 69 PLIALMKNQVDVVR--GISGTDKIAHVLNSSLTKGEIRTVMEDIRNGET--KLLYVAPES 124
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILAL 199
+ LK I+ ++ VA+DEAHCIS WGHDFRP YR + ++ + L ++PI+AL
Sbjct: 125 LTKDEYADFLKTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKAIIDRLGNNIPIIAL 180
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + LV KSSFNRPNL+YEVR K + +D+ +K +
Sbjct: 181 TATATTKVQEDILKNLGIPEALVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQHPGQ 238
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ +VVVAT+AFG
Sbjct: 239 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIAFG 298
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSK 376
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++ K
Sbjct: 299 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVGK 356
>gi|294142824|ref|YP_003558802.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293329293|dbj|BAJ04024.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
Length = 610
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 230/366 (62%), Gaps = 10/366 (2%)
Query: 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
KP + + L L+ FG+ FR Q + I+ + +G DC +MPTGGGKS+CYQ+PAL
Sbjct: 7 KPQPQLDPLSSSLQSVFGYRTFRKGQREVIEQICAGVDCLVIMPTGGGKSLCYQLPALQM 66
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
PG+ +VVSPLI+LM++QV L++ G+ +L+S+Q Q +I ++ SG+ L+LLYV+
Sbjct: 67 PGLTIVVSPLISLMKDQVDSLQQMGVNAGYLNSSQAGQESARILREMHSGE--LKLLYVS 124
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE F+ +L ++H ++L AIDEAHCIS WGHDFRP Y L LR Y P VPI+
Sbjct: 125 PERLLQASFIDRLHELH----ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIM 180
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA ++D+ + L + P +SF+RPN+ Y V K +A L + A
Sbjct: 181 ALTATADQATRQDICQRLTI-TPFSFLTSFDRPNIRYTVAEKL---NAANQLRQFVTAQN 236
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
T I+YC R DE++ L G + +YHAG + R+ V D ++ + +VVATVA
Sbjct: 237 GTSGIIYCGSRRRVDEVAERLRLQGHNADSYHAGRTQEERADVQDRFLKDQLDIVVATVA 296
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ +VR V H++IPKS+E++YQE+GRAGRD L S++L+ + D R+ ++ ++
Sbjct: 297 FGMGINKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQS 356
Query: 378 QSKNSQ 383
+ Q
Sbjct: 357 EPGPQQ 362
>gi|332291025|ref|YP_004429634.1| RecQ familyATP-dependent DNA helicase [Krokinobacter sp. 4H-3-7-5]
gi|332169111|gb|AEE18366.1| ATP-dependent DNA helicase, RecQ family [Krokinobacter sp.
4H-3-7-5]
Length = 732
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/361 (44%), Positives = 224/361 (62%), Gaps = 20/361 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG +QF+ Q + I++++ G F +MPTGGGKS+CYQ+PAL G
Sbjct: 8 LHEE------LKRYFGFSQFKGLQEEVIRSIVGGNHSFVIMPTGGGKSLCYQLPALIAEG 61
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+VVSPLIALM+NQV L+ E+GIA SS ++K K+ ED+ G +LLY
Sbjct: 62 TAIVVSPLIALMKNQVDALRGISQEEGIAHVLNSSLTKGEIK-KVKEDITRG--VTKLLY 118
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-V 194
V PE + L+ + ++ +AIDEAHCIS WGHDFRP YR L + + D +
Sbjct: 119 VAPESLTKEENVEFLRGV----TVSFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDNI 174
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
PI+A+TATA PKVQ+D++++L + + K+SFNRPNL+YEVR K DA D+ +K
Sbjct: 175 PIIAVTATATPKVQEDILKNLGITDANTFKASFNRPNLYYEVRPKTAQVDA--DIIRFVK 232
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
N I+YCL R +EL+ L G+ YHAGL+ K R D ++ VVVA
Sbjct: 233 QNEGKSGIIYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRVRHQDMFLMEDVDVVVA 292
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +
Sbjct: 293 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFM 352
Query: 375 S 375
S
Sbjct: 353 S 353
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 235/376 (62%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NPL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|428173190|gb|EKX42094.1| BLM RecQ DNA helicase family member, partial [Guillardia theta
CCMP2712]
Length = 412
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 219/349 (62%), Gaps = 7/349 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L K+ + F + FR Q + I +LSG DCF LMPTGGGKS+CYQ+PAL PG+ +V
Sbjct: 7 EKLRKINKHVFRNPSFRKHQEEIINTILSGHDCFVLMPTGGGKSLCYQLPALMSPGVTIV 66
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL--RLLYVTPELT 141
+SPL++LM +QV L I +S+ M ++Y L K + +L+Y+TPE
Sbjct: 67 ISPLVSLMHDQVYNLNLLRIGAYCISANTPMSELEEMYSCLRGVKEGINCQLIYITPEKF 126
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
A + +++++ G L+ + IDEAHC+S WGHDFRP Y+ L +L++ LP V I+ALT
Sbjct: 127 AHSQRLQNEMQRSFQNGKLSRIIIDEAHCVSEWGHDFRPDYKMLGALKSKLPGVQIMALT 186
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GD 258
ATA P+V++D+ L + SFNRPNL YEVR K+ A ++ + +K N G+
Sbjct: 187 ATATPRVRRDIRNILQINEAYTFMQSFNRPNLRYEVRKKEKKKSA-ENIATFIKENYPGE 245
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
T I+YCL + C+E++A + I YHAGL+D+ R D W + + V+VAT+AF
Sbjct: 246 T-GIIYCLSKNRCEEMAAKMQEFKIKALPYHAGLDDQTRKFNQDQWSNDKTHVIVATIAF 304
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
GMGI++ DVR V H ++PKSME +YQESGRAGRD S +LYY D+
Sbjct: 305 GMGINKPDVRFVIHESLPKSMEGYYQESGRAGRDGKISHCILYYSYSDK 353
>gi|323303418|gb|EGA57213.1| Sgs1p [Saccharomyces cerevisiae FostersB]
Length = 1423
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKXSMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 233/370 (62%), Gaps = 27/370 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 8 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK E+ L++LY+ PE P
Sbjct: 68 SLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLEN------RLKVLYIAPERLMMP 121
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR---NYLPDVPILALTA 201
G + LKK G ++L AIDEAHCIS WGHDFRP YRKL LR N PDVP++ALTA
Sbjct: 122 GTFAFLKK----GKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTA 177
Query: 202 TAAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
TA +V+KD++ L L + P V +SFNR NL+YEVR K D ++++ L +
Sbjct: 178 TATERVKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRPKK---DTFSEITDYLLRH 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+
Sbjct: 233 RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 293 AFGMGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQ 352
Query: 377 NQSKNSQSFS 386
++ + S
Sbjct: 353 KTNEKEKDIS 362
>gi|347536603|ref|YP_004844028.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529761|emb|CCB69791.1| ATP-dependent DNA helicase RecQ3 [Flavobacterium branchiophilum
FL-15]
Length = 702
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 218/337 (64%), Gaps = 11/337 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG FR Q IQ+VL+G+D +MPTGGGKS+C+Q+PAL G+ +VVSPLIA
Sbjct: 10 LKDHFGFENFRPNQEAIIQSVLNGQDTVAIMPTGGGKSICFQLPALIFQGLTIVVSPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV LK GI F++S+Q + E + +G +++L+YV PE ++
Sbjct: 70 LMKDQVDSLKANGINACFINSSQQAMEQHYYLEQIHNG--NIKLVYVAPES------LNY 121
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + ++L+AIDEAHCIS+WGHDFRP+Y L L+N + PILALTATA ++
Sbjct: 122 LEPLFASIQVSLIAIDEAHCISAWGHDFRPAYCNLGYLKNKFANTPILALTATADKATRQ 181
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ + L LQNP V +SF+R NL EVR D + + D I+YCL R
Sbjct: 182 DICDQLNLQNPHVFVASFDRKNLSLEVRPAL---DRVKQIVQFIDKKADEAGIIYCLSRK 238
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T +ELS L + GIS AYHAGL++ R+ V D +I+ QVV ATVAFGMGID+ +VR
Sbjct: 239 TTEELSEKLQSKGISAMAYHAGLDNHNRTKVQDAFINDTCQVVCATVAFGMGIDKSNVRW 298
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V H+N+PK++E +YQE GRAGRD P++++L+ D
Sbjct: 299 VIHYNLPKNIEGYYQEIGRAGRDGQPAETILFQSYGD 335
>gi|189462225|ref|ZP_03011010.1| hypothetical protein BACCOP_02908 [Bacteroides coprocola DSM 17136]
gi|189431078|gb|EDV00063.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 727
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 223/356 (62%), Gaps = 13/356 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK L + L+ +FG F+ Q I +L+G+D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAEKINLAEQLKKYFGFDTFKGNQEAIISNLLAGKDTFVLMPTGGGKSLCYQLPSLLMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ T ++ D+ +GK +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLTKSAIDQVKSDILAGKT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LK + ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLKHVK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGKAP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKV+ D+ ++L + KSSFNRPNL+YEVR K ++ D+ +K
Sbjct: 174 VIALTATATPKVKMDIQKNLGMVGATEFKSSFNRPNLYYEVRPK--TNNVDKDIIRFIKQ 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N + I+YCL R +EL+ L A GI YHAG++ R++ D ++ +V+VAT
Sbjct: 232 NPEKSGIIYCLSRKKVEELAEILQANGIKARPYHAGMDSATRNANQDAFLKEDIEVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGMCITFYSNKDLQKLE 347
>gi|386389497|ref|ZP_10074311.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
gi|385695267|gb|EIG25829.1| ATP-dependent DNA helicase RecQ [Haemophilus paraphrohaemolyticus
HK411]
Length = 601
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 216/333 (64%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I++ L+G+D F +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEVIESTLAGKDTFVIMTTGGGKSLCYQVPALCLEGITLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +L+STQT++ + + + +G+ L+LLY++PE T GF +
Sbjct: 75 QVDQLLTNGIEAAYLNSTQTLEEQRAVEQKALNGQ--LKLLYLSPEKVMTQGFYHFI--- 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +A+DEAHC+S WGHDFRP Y L +LRN P++P++ALTATA P + D++
Sbjct: 130 -SHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNIPLMALTATADPTTRADILH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K L + IVYC R +E
Sbjct: 189 HLRLNDPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFIAGQKGKSGIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARNISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++++Y D
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSQAVMFYDPAD 338
>gi|288803880|ref|ZP_06409305.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica D18]
gi|288333645|gb|EFC72095.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica D18]
Length = 727
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 215/349 (61%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIETIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE 349
>gi|302345889|ref|YP_003814242.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica ATCC
25845]
gi|302148973|gb|ADK95235.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica ATCC
25845]
Length = 727
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 215/349 (61%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIETIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICVVFYSKKDLNKLE 349
>gi|407692774|ref|YP_006817563.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
gi|407388831|gb|AFU19324.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
Length = 602
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/333 (45%), Positives = 215/333 (64%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQTFEEQQDVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LRN P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K L + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFIGKQQGKSGIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLATRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 339
>gi|332882051|ref|ZP_08449686.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357048209|ref|ZP_09109763.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
gi|332679975|gb|EGJ52937.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355528792|gb|EHG98270.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
Length = 608
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 214/340 (62%), Gaps = 11/340 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG FR Q D I +L+G D LMPTGGGKS+CYQ+PAL + G +V+SPLI
Sbjct: 4 ILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
+LM++QV GL+ G+ L+S ++ G+ L+LLY++PE + P
Sbjct: 64 SLMKDQVEGLRANGVPAAALNSMNDEAESARVRAACLRGE--LKLLYISPERLMLELPYL 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +K ++L A+DEAHCIS WGHDFRP Y +L LR PDVPI+ALTATA
Sbjct: 122 IRDMK-------VSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFPDVPIVALTATADRL 174
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D+ + L L +P+V SSF+RPNL +V+ D + ++ + D C I+YCL
Sbjct: 175 TREDIQKQLALSDPVVFISSFDRPNLSLDVKRGYQKKDKDRAILELIARHPDDCGIIYCL 234
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ T + ++ L I+ AYHAGL + R DD+I R QVV ATVAFGMGID+ +
Sbjct: 235 SKKTTESVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCATVAFGMGIDKSN 294
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+N+PKS+E FYQE GRAGRD LP++++L+Y + D
Sbjct: 295 VRFVIHYNLPKSIEGFYQEIGRAGRDGLPAETVLFYSLGD 334
>gi|345866766|ref|ZP_08818787.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
gi|344048686|gb|EGV44289.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
Length = 733
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 157/351 (44%), Positives = 222/351 (63%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ Q ++++LSG+D F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKTYFGFSAFKGLQEPVVKSILSGKDTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +++ ++ ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISDHDGVAHVLNSSLNKTEIR-QVKEDITSG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L S+ + D +PI+ LTATA
Sbjct: 129 NVEFLRSVK----ISFMAVDEAHCISEWGHDFRPEYRNLKSIIERIGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K DA D+ +K IVY
Sbjct: 185 PKVQEDILKNLNINDAKTFKASFNRPNLYYEVRPKTKHVDA--DIIRFVKKYEGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K+R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQTLQVNGIKAVPYHAGLDAKSRARHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGYCLAFYAYKDIEKLEKFMS 353
>gi|373957711|ref|ZP_09617671.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
gi|373894311|gb|EHQ30208.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
Length = 731
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/358 (45%), Positives = 224/358 (62%), Gaps = 17/358 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ K++L L+ FG F+ +Q I +LSG D F +MPTGGGKSMCYQ+PAL G
Sbjct: 2 IETKKSLFDNLQNFFGFDNFKGEQEAIITNILSGNDTFVIMPTGGGKSMCYQLPALMTDG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ +V+SPLIALM+NQV L+ G + FL+S+ T TK+ ED+ SGK +LLYV
Sbjct: 62 MAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLTKSEITKVKEDVLSGKT--KLLYV 119
Query: 137 TPELTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPD 193
PE ++K + I L ++ VA+DEAHCIS WGHDFRP YRK+ + N +
Sbjct: 120 APE------SLTKQENIDFLRLNSVSFVAVDEAHCISEWGHDFRPEYRKIRQVISNIGEN 173
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
+PI+ALTATA PKVQ+D+ ++L + N + KSSFNR NLFYEVR K + ++ +
Sbjct: 174 IPIIALTATATPKVQQDIQKNLQMNNATIYKSSFNRGNLFYEVRAKR---NVLKEIVRFV 230
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K + I+YCL R +E++ LS G+ YHAGL+ K R+ D ++ V+V
Sbjct: 231 KQHTGKSGIIYCLSRKKVEEVAEALSLNGVKALPYHAGLDAKVRADTQDRFLMEDVDVIV 290
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
AT+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD L +Y D +++
Sbjct: 291 ATIAFGMGIDKPDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGVCLAFYSEKDIDKLQ 348
>gi|374334314|ref|YP_005091001.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
gi|372984001|gb|AEY00251.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
Length = 608
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 227/361 (62%), Gaps = 15/361 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FRD QL+ ++A ++GRD +MPTGGGKS+CYQIPAL +PG+ +VVSPLI
Sbjct: 20 VLQQVFGYQDFRDGQLEIVEAAVAGRDAMVIMPTGGGKSLCYQIPALLRPGLTVVVSPLI 79
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L G+A +++S+ + + + L G+ ++LLYV+PE FM
Sbjct: 80 SLMKDQVDTLVANGVAAAYINSSLSRDTMLRHFTALRRGE--IKLLYVSPERLLQHEFME 137
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L ++ L L AIDEAHCIS WGHDFRP Y +L L+ + P +P++ALTATA +
Sbjct: 138 RLGELE----LGLFAIDEAHCISQWGHDFRPEYAELGRLKQWFPHIPVMALTATADEATR 193
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+D++ L L PL+ +SF+RPN+ Y + ++K L L + C IVYC
Sbjct: 194 QDMLGRLNLTAPLIHIASFDRPNIRYTLVEKFKGL-----DQLVRYVAEQNGQCGIVYCS 248
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G A+YHAGL + R SV + +I +VVATVAFGMGID+ +
Sbjct: 249 SRKRVEEVAERLLAKGHRAASYHAGLPLELRQSVQERFIRDDLDIVVATVAFGMGIDKPN 308
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H++IPK++E++YQE+GR GRD LPS++LL Y D R+ +L S N Q
Sbjct: 309 VRYVVHYDIPKNIESYYQETGRGGRDGLPSEALLLYDPGDVGRVRRLLEN--SDNEQQLQ 366
Query: 387 T 387
Sbjct: 367 V 367
>gi|253690325|ref|YP_003019515.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756903|gb|ACT14979.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 608
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/343 (45%), Positives = 227/343 (66%), Gaps = 14/343 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L + L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----IALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ +SF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQINSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFY 340
>gi|389842669|ref|YP_006344753.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
gi|387853145|gb|AFK01243.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
Length = 609
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 223/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|87125637|ref|ZP_01081482.1| DEAD/DEAH box helicase:Helicase C-terminal domain [Synechococcus
sp. RS9917]
gi|86166937|gb|EAQ68199.1| DEAD/DEAH box helicase:Helicase C-terminal domain [Synechococcus
sp. RS9917]
Length = 499
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 154/359 (42%), Positives = 222/359 (61%), Gaps = 5/359 (1%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L+ +L+ FG +FR Q I+A+L GRD ++PTGGGKS+CYQ+PAL + G+VLV
Sbjct: 2 DPLLVMLQEQFGWDRFRSGQRPVIEALLEGRDALAVLPTGGGKSLCYQLPALVRQGLVLV 61
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL+ALME+QV L+++ IA L + + ++ DL SG +LRLLY+ PE +
Sbjct: 62 VSPLVALMEDQVRQLRQRQIAAACLHAGLAPDQRQAVFRDLASG--ALRLLYLAPERLQS 119
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P + G L +A+DEAHCIS+WGHDFRP YR+L +R + P VP++AL+ATA
Sbjct: 120 PTIKGVIASTAQAGHLVALAVDEAHCISAWGHDFRPDYRRLGEIRAHCPGVPVVALSATA 179
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
AP+V+ D++ L LQ PLV S R NL Y +R + D D+ + LKA A++
Sbjct: 180 APQVRADILRLLALQQPLVQVGSARRDNLHYAMRRR--AKDPLPDVLAALKAT-RGAALI 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y R + ++ + L A GI YHAGL + R L ++ + V+VATVAFGMG+D
Sbjct: 237 YARTRRSVEQWAERLCAQGIEAIPYHAGLEPEVRQQALRHFLETEHPVLVATVAFGMGVD 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
R DV LV H N+P + E + QESGRAGRD LP++ L+ + DR + + + + ++
Sbjct: 297 RPDVGLVLHLNLPATPEGYLQESGRAGRDGLPAQCLVLFSPGDRTSLGWAMQTSWRRSG 355
>gi|325298909|ref|YP_004258826.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324318462|gb|ADY36353.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 606
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 217/342 (63%), Gaps = 9/342 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ FR Q + I VL +D LMPTGGGKS+CYQIPAL G +VVS
Sbjct: 1 MLKTLKSYFGYTSFRPLQEEIISCVLQKKDTLVLMPTGGGKSLCYQIPALLTEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+S I + G+ ++LLY++PE L A
Sbjct: 61 PLISLMKDQVEALQNNGIIARALNSNNDETANANIRFECRQGR--VKLLYISPERLLAEI 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK IH ++L AIDEAHCIS WGHDFRP Y +L+ LR P VPI+ALTATA
Sbjct: 119 NYL--LKDIH----ISLFAIDEAHCISQWGHDFRPEYTQLAVLREQFPHVPIIALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+++ L +++P + SSF+RPNL +V+ + + + + IVY
Sbjct: 173 KITREDIVKQLAMRDPQIFISSFDRPNLSLDVKRGYQQKEKNRAVLEFITRHKGESGIVY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R T ++++ L G+S A YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRNTTEKVADMLEEHGVSTAVYHAGLSSTIRDKAQEDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFAD 334
>gi|156935855|ref|YP_001439771.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ATCC
BAA-894]
gi|424801979|ref|ZP_18227521.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|429119492|ref|ZP_19180209.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
gi|156534109|gb|ABU78935.1| hypothetical protein ESA_03738 [Cronobacter sakazakii ATCC BAA-894]
gi|423237700|emb|CCK09391.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|426326019|emb|CCK10946.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
Length = 609
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 223/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 235/368 (63%), Gaps = 23/368 (6%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 28 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 87
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK+ E+ L++LY+ PE P
Sbjct: 88 SLMKDQVDGLEANGIAAACMNSTQSAREIRDVKSAFLEN------RLKILYIAPERLMMP 141
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN---YLPDVPILALTA 201
G ++ LKK G ++L AIDEAHCIS WGHDFRP YRKL LR+ PDVP++ALTA
Sbjct: 142 GTITFLKK----GKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDVPVIALTA 197
Query: 202 TAAPKVQKDVMESLCLQ-NPL--VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TA +V+KD++ L L +P + +SFNR NL+YEVR K D ++++ L +
Sbjct: 198 TATGRVRKDIIVQLGLDLDPEKGLYVASFNRSNLYYEVRPKK---DTFSEITDYLLRHRG 254
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+AF
Sbjct: 255 EAGIIYCQSRNNVETLTKKLNLAGFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAF 314
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 315 GMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKT 374
Query: 379 SKNSQSFS 386
++ + S
Sbjct: 375 NEKEKDIS 382
>gi|417792738|ref|ZP_12440060.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|429117792|ref|ZP_19178710.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449309964|ref|YP_007442320.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
gi|333953169|gb|EGL71149.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|426320921|emb|CCK04823.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449099997|gb|AGE88031.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
Length = 609
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 223/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|448111284|ref|XP_004201806.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359464795|emb|CCE88500.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1430
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 221/349 (63%), Gaps = 18/349 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PAL G +V+SPLI+LM++Q
Sbjct: 750 FRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRGTTIVISPLISLMQDQ 809
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKI 153
V L K I +SS + + E +G+ L+L+Y++PE+ T + ++ ++
Sbjct: 810 VQHLLHKNIRAGMISSKGSAAERKSTLEQFRNGE--LQLVYLSPEMVNTSQHIQRIIARL 867
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L V +DEAHC+SSWGHDFRP Y+ +S + P VP++ALTATA KV+ D++
Sbjct: 868 YESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPVMALTATANEKVRMDIVH 927
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLER 268
L + +P++LK SFNR NLFYE+++K D + D +L + I+YC +
Sbjct: 928 HLQMSDPVLLKQSFNRTNLFYEIKWKAANFLDWIRDY------ILTKQQNKTGIIYCHSK 981
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ S L+ G+ C+ YHAGL+ R + DW +R QV+ AT+AFGMGID+ DVR
Sbjct: 982 QSCEVTSDRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICATIAFGMGIDKPDVR 1041
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
V H IP+S+E +YQE+GRAGRD LPS+ +++Y D R ++ ++ ++
Sbjct: 1042 FVIHLFIPRSLEGYYQETGRAGRDGLPSECIMFYSYKDARSLQNMIQRD 1090
>gi|323343308|ref|ZP_08083535.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323095127|gb|EFZ37701.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 725
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 220/349 (63%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG +F+ Q I+ +L+G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LIEKLKHYFGFDKFKGDQEAIIRNLLAGKDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ +D+ +G+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVVNGMSEEEGVAHYLNSSLNKAAIQQVMDDVRNGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L+ ++ ++ AIDEAHCIS WGHDFRP YR + N + + P++ALTAT
Sbjct: 125 KEENVEFLRGVN----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SLC+ KSSFNRPNL+YEVR K +D + +K + I
Sbjct: 181 ATDKVRTDIKKSLCITEAKEFKSSFNRPNLYYEVRQKS--NDIDRQVIKFIKQHPCKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAAILLANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLQKLE 347
>gi|300728338|ref|ZP_07061703.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299774403|gb|EFI71030.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 726
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 214/349 (61%), Gaps = 11/349 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG +F+ Q I+ VL G D F LMPTGGGKS+CYQ+P+L PG +V+S
Sbjct: 7 LIDALKRYFGFDKFKGDQEAIIRNVLDGNDTFVLMPTGGGKSLCYQLPSLIMPGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E +L+S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGMSEGDGVAHYLNSSLNKSAVEQVKSDIRAGKT--KLLYVAPESLT 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + + + + P++ALTAT
Sbjct: 125 KEDNVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIISQIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ SL + + KSSFNRPNL+YEVR K D + +K + I
Sbjct: 181 ATDKVRTDIKRSLGIADAHEFKSSFNRPNLYYEVRPK--TKDVDKQIIMFIKQHPGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L A I AAYHAGL+ RS DD++ V+VAT+AFGMGI
Sbjct: 239 IYCLARKKVEELAEILKANDIKAAAYHAGLDSSTRSKTQDDFLMENIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GR GRD K + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRVGRDGGEGKCIAFYAKKDLKKLE 347
>gi|50292717|ref|XP_448791.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528104|emb|CAG61761.1| unnamed protein product [Candida glabrata]
Length = 1371
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 226/360 (62%), Gaps = 10/360 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIV 81
+ K L+ F FR Q +AI A LSG+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 615 VYKKLKTVFNLTSFRSNQEEAINATLSGKDVFVLMPTGGGKSLCYQLPAIVKGGCTKGTT 674
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL- 140
+V+SPLI+LM++QV L++ + LSS + K + +G L L+Y++PE+
Sbjct: 675 IVISPLISLMQDQVEHLQKLNVKARMLSSKGGIDEKNHTFNLFING--FLDLIYLSPEMI 732
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ + + ++K++ L + +DEAHC+S+WGHDFRP Y++LS + PD+P++ALT
Sbjct: 733 SVSEKCKTAIEKLYQNKQLARIVVDEAHCVSNWGHDFRPDYKQLSYFKVQYPDIPMMALT 792
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA+ +VQ D++ +L L++ L L+ SFNR NL+YEVR K + ++C +K +
Sbjct: 793 ATASEQVQMDIVFNLKLKDNLFLRQSFNRTNLYYEVRKK--TKNTIFEICDTIKQQFRNQ 850
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC + +C++ + + GI CA YHAG+ R V +W + QV+ ATVAFG
Sbjct: 851 TGIIYCHSKNSCEQTAQQMQRNGIKCAYYHAGMEADERLQVQREWQNDNLQVICATVAFG 910
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF +P+++E +YQE+GRAGRD S + YY D R M+ ++ K+++
Sbjct: 911 MGIDKADVRFVFHFTVPRTLEGYYQETGRAGRDGNYSYCITYYSFRDVRTMQTMIQKDKN 970
>gi|389775051|ref|ZP_10193137.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
gi|388437716|gb|EIL94498.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
Length = 608
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 235/378 (62%), Gaps = 11/378 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +VVSP
Sbjct: 5 LDILQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSP 64
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A FL+S+ + ++ L +G+ L LLYV PE T F
Sbjct: 65 LIALMQDQVDALREAGVAAAFLNSSLAGDQQREVERQLLAGE--LNLLYVAPERLLTSRF 122
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L++ + L AIDEAHC+S WGHDFRP YR+L+ L P+VP +ALTATA P+
Sbjct: 123 LDLLERTE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPEVPRIALTATADPR 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+++++E L LQ+ SSF+RPN+ Y V + +A L L + IVYCL
Sbjct: 179 TREEIVERLSLQDARQFVSSFDRPNIGYRVGQRH---NAKRQLGEFLLGHEGESGIVYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+ +A+L+ GI YHAGL+ R+ ++ V+VATVAFGMGID+ D
Sbjct: 236 SRRKVDDTAAWLAESGIEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPD 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + +
Sbjct: 296 VRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRV 355
Query: 387 TRERSSKKSISDFSQVLD 404
ER +S+ +++ +D
Sbjct: 356 --ERQKLESLLAYAEAID 371
>gi|321475158|gb|EFX86121.1| RecQ1-like protein [Daphnia pulex]
Length = 624
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/357 (44%), Positives = 216/357 (60%), Gaps = 3/357 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ F +FR QL A+ A L G D +MPTGGGKS+CYQ+PAL GI LV++
Sbjct: 69 LYQTLKDAFHIEKFRPMQLSAMNATLKGHDVILIMPTGGGKSLCYQLPALVSDGITLVIT 128
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL++LME+Q+ L++ GI L+++ + + ++ + K SL+LLYVTPE L +
Sbjct: 129 PLVSLMEDQLASLEKLGIEAAKLNASSSKEEVNMVHLAMTDAKSSLKLLYVTPEKLAKSK 188
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
FM+KL+K++ VA+DE HC S WGHDFRP Y+ L LR+ P VPI+ LTATA
Sbjct: 189 RFMTKLQKMYQIKRFACVAVDEVHCCSQWGHDFRPDYKYLGVLRSLFPTVPIVGLTATAT 248
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAI 262
V DV + L ++N LV K+SFNRPNL+YEVR K D L N I
Sbjct: 249 LNVTNDVQKMLNMKNSLVFKASFNRPNLYYEVRIKPSTQKECIDELVQLLTNRFHGQSGI 308
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+Y CD+L++ L A+YHA L R+ V W +R Q VVAT+AFGMGI
Sbjct: 309 IYTTSVKDCDQLASELRQQKCRVASYHASLEPADRTEVHTGWRENRYQAVVATIAFGMGI 368
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
D+ DVR V H +I KSME FYQESGRAGRD L + ++Y+ + D R+ ++ Q+
Sbjct: 369 DKPDVRFVIHHSISKSMENFYQESGRAGRDDLQACCIVYWRLSDLFRLSTMVFTEQT 425
>gi|317494839|ref|ZP_07953250.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917164|gb|EFV38512.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 612
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I A ++GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G++ L+STQ + + ++Y SG +++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVSAACLNSTQNREQQQEVYAGCRSG--AIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + +L+A+DEAHCIS WGHDFRP Y L ++ PD+P++ALTATA
Sbjct: 133 DQLPHWNP----SLLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATADDAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+ L L +PLV SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKPL-----DQLIRFVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G S AYHAGL+ + RSSV D + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++EA+YQE+GRAGRD LP++++L Y
Sbjct: 304 NVRFVVHFDIPRNIEAYYQETGRAGRDGLPAEAVLLY 340
>gi|195157038|ref|XP_002019403.1| GL12253 [Drosophila persimilis]
gi|194115994|gb|EDW38037.1| GL12253 [Drosophila persimilis]
Length = 1349
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 221/358 (61%), Gaps = 7/358 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 577 LMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 636
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS M IY DL+S P ++LLYVTPE ++++
Sbjct: 637 PLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYVTPEKISSSA 696
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 697 RFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 756
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L+N SSFNR NL Y+V K +DD A + ++
Sbjct: 757 PRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGASTIDDMSA---YIRTKPPNSSG 813
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CDE++ + G+ AYHAGL D R DW++++ +V+ AT+AFGMG
Sbjct: 814 IIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVICATIAFGMG 873
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
ID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ +++
Sbjct: 874 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEVADCILYYNYSDMLRLKKMMDGDKA 931
>gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis]
Length = 1632
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 226/378 (59%), Gaps = 18/378 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K+L+ F FR QL+AI A L+G D F LMPTGGGKS+CYQ+PA+ + G+ +V
Sbjct: 789 KMLKERFKLKGFRHHQLEAINATLNGEDAFILMPTGGGKSLCYQLPAVVQSGKTKGVTIV 848
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM +QV L++ I ++ + +I +L P ++LLYVTPE+
Sbjct: 849 VSPLLSLMHDQVEHLRKNSIQAATINGDTDSAERREIMNNLRQQHPEQHIQLLYVTPEMV 908
Query: 142 ATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ G M L ++ R L IDEAHC+S WGHDFR Y LS LR P VPI+ALT
Sbjct: 909 SQSGQMGDILSSLNQRSKLARFVIDEAHCVSQWGHDFRKEYIALSRLRKDFPSVPIMALT 968
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK------DLLDDAYADLCSVLK 254
ATA V+ DV+ +L + P + SFNRPNL+YEVR K +LL + ADL + K
Sbjct: 969 ATATENVKNDVISNLGMGKPPIFSQSFNRPNLYYEVRPKSGRKMPELLKE-IADLVT-RK 1026
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
G T I+Y L R C++++ LS IS YHAG+ + ++ V DW S + QVVV
Sbjct: 1027 YRGQT-GIIYTLSRKGCEDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGKLQVVV 1085
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EF 372
AT+AFGMGID+ DVR V H+ IPKS+E +YQE+GRAGRD S LYY D + +F
Sbjct: 1086 ATIAFGMGIDKPDVRFVIHYTIPKSLEGYYQETGRAGRDGKKSGCYLYYSWGDTVMLRKF 1145
Query: 373 ILSKNQSKNSQSFSTRER 390
I + + +S +ER
Sbjct: 1146 IFESDTKNDQKSTDQKER 1163
>gi|397162702|ref|ZP_10486172.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
gi|396095746|gb|EJI93286.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
Length = 608
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 239/382 (62%), Gaps = 17/382 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q D I VLSGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQQDIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVLQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQFDVINGCRNGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L++ + L+A+DEAHCIS WGHDFRP Y L LR LP VP +ALTA
Sbjct: 127 MLDNFLDQLRQWNP----VLLAVDEAHCISQWGHDFRPEYAALGHLRQMLPSVPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA ++D+ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADDTTRRDIERLLGLNDPLIQVSSFDRPNIRYMLMEKFKPL-----DQLLRYVQEQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++ +A L + G S AAYHAGL+++ R+ V + + Q+VVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGFSAAAYHAGLDNELRARVQEQFQRDDLQIVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 355 KPAGPLQDIERHKLNAMGAFAE 376
>gi|290513154|ref|ZP_06552516.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
gi|289774365|gb|EFD82371.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
Length = 618
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 154/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 19 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 78
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 79 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 136
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR LP +P +ALTA
Sbjct: 137 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRLPQIPFMALTA 192
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 193 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 246
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 247 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 306
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 307 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 350
>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
Length = 601
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 220/338 (65%), Gaps = 9/338 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR+ Q + I+AVL+G+DC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQHFRNGQQEVIEAVLTGQDCLVIMTTGGGKSLCYQVPALCLEGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++ +QT + + ++ + SG+ L+LLY++PE T F S +
Sbjct: 76 QVDQLLTYGIEAGYINCSQTFEEQQRVEQKALSGQ--LKLLYLSPEKVMTQAFFSFI--F 131
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H + ++L+ +DEAHC+S WGHDFRP Y L LR +P++ALTATA P +KD+++
Sbjct: 132 HCK--ISLIVVDEAHCVSQWGHDFRPEYALLGRLRKTFVGIPLMALTATADPTTRKDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
LCL NP SF+RPN+ Y V+ K + +L+ G + I+YC R +E
Sbjct: 190 HLCLTNPYTYLGSFDRPNIRYTVQQKFKPLEQLTQF--ILRQQGKS-GIIYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+S L+A IS YHAG+ + R V + + Q+VVAT+AFGMGI++ +VR V HF
Sbjct: 247 ISEKLAARKISVMGYHAGMPVQQREMVQEAFQRDNIQIVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
++P+S+EA+YQE+GRAGRD LPS+++L+Y D ME
Sbjct: 307 DLPRSIEAYYQETGRAGRDDLPSEAVLFYNPSDYAWME 344
>gi|154281633|ref|XP_001541629.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411808|gb|EDN07196.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1557
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 236/401 (58%), Gaps = 22/401 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKVIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNGQ-AGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q +R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQ--KSR 1043
Query: 389 ERSSKKSISDF---------SQVLDVAGKRFSRVLGNRYWD 420
+R + + F Q+L ++F + NR D
Sbjct: 1044 QRQMLRHVVQFCENRSDCRRVQILAYFNEKFKKENCNRSCD 1084
>gi|409911451|ref|YP_006889916.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
gi|298505021|gb|ADI83744.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
Length = 603
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 216/340 (63%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR FG+ FR Q + + V G D F LMPTGGGKS+CYQIP+L +PG+ +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +ST + ++ L G+ L LLYV PE T F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRQVLARLHGGE--LDLLYVAPERLMTDAF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L++I + L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + + F+RPN+ Y V K + L L IVYCL
Sbjct: 180 TRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQ---KPFRQLEEFLATRPREAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G+ AAYHAGL D RS V + ++ +VVVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAEKLRAAGVEAAAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PK++E++YQE+GRAGRD LP+++LL +G D
Sbjct: 297 VRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD 336
>gi|239625286|ref|ZP_04668317.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium
1_7_47_FAA]
gi|239519516|gb|EEQ59382.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium 1_7_47FAA]
Length = 824
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 226/363 (62%), Gaps = 8/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q I ++L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 5 EILKQYFGYDTFRDGQDVLINSILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI F++S+ T K+ E +G+ ++YV PE + F+
Sbjct: 65 ISLMKDQVSNLNQVGILAAFINSSLTASQYIKVLELARAGR--YPIIYVAPERLMSEDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ R +++VA+DEAHC+S WG DFRPSY K+ N LP PI+ A TATA +
Sbjct: 123 RF--ALDGRVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPVRPIVSAFTATATAE 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + F+R NL++ V+ D YA L + L+ + I+YCL
Sbjct: 181 VRDDIIDILMLRNPNVMTTGFDRSNLYFAVQSPK---DKYATLVNYLERHKGESGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ + L G S YHAGL+D R +D+I R Q++VAT AFGMGID+ +
Sbjct: 238 TRKVVEEVCSQLMREGFSMTRYHAGLSDSERKRNQEDFIYDRAQIMVATNAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 298 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPV 357
Query: 387 TRE 389
TRE
Sbjct: 358 TRE 360
>gi|387793516|ref|YP_006258581.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379656349|gb|AFD09405.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 705
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 223/341 (65%), Gaps = 14/341 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG+ +FR Q + IQ++L +D LMPTGGGKS+C+Q+PAL G+ +V+SPLI
Sbjct: 8 VLKEYFGYDEFRPLQRNIIQSILDKKDTLVLMPTGGGKSICFQVPALLLDGLCVVISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ GI +L+S+Q+ + + + ED +G +++LLY++PE
Sbjct: 68 SLMKDQVDALRINGIGAAYLNSSQSFEEEEVVIEDCING--NIKLLYLSPE--------- 116
Query: 149 KLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
KLK + R + L+AIDEAHCISSWGHDFRP Y +LS L+ DVPI+ALTATA
Sbjct: 117 KLKSSIPMLGRFNIQLLAIDEAHCISSWGHDFRPEYTQLSILKERFSDVPIVALTATADR 176
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+KD++ L L P +SF+RPNL EV+ ++ + + + I+YC
Sbjct: 177 VTRKDIIRQLNLHKPATFVASFDRPNLNLEVKTGIKTRQKDQEIVQFIHSKPNQSGIIYC 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T +EL+ L ++ AAYHAG++ R+ +D+I+ R QVV ATVAFGMGID+
Sbjct: 237 LSRKTTEELAEKLREHQVNAAAYHAGMSADDRNETQEDFINDRVQVVCATVAFGMGIDKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PK++E +YQE GRAGRD L S+++LYY + D
Sbjct: 297 NVRWVIHYNLPKNIEGYYQEIGRAGRDGLESETILYYNLVD 337
>gi|326789234|ref|YP_004307055.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
gi|326539998|gb|ADZ81857.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
Length = 733
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 224/341 (65%), Gaps = 10/341 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ ++G+ FR Q + IQA+LSG+D +MPTGGGKS+CYQ+PAL G+ +V+SP
Sbjct: 4 LNILKKYYGYDAFRPGQEELIQAILSGKDALGIMPTGGGKSICYQVPALLLDGVTIVISP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV LKE GI E ++ST + + +I + G + +LLYV PE T F
Sbjct: 64 LISLMKDQVDTLKEYGIEAELINSTLSTKEFREIRANARMG--AYKLLYVAPERLETESF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA-LTATAAP 205
M ++++ +++VA+DEAHC+S WGHDFRPSYR++S + LP PI+A TATA P
Sbjct: 122 MDLIREVP----VSMVAVDEAHCVSQWGHDFRPSYRRVSQILYALPKRPIVAAFTATATP 177
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
V++D+++ L L P L SSF+RPNL++EVR + + + L+ + ++YC
Sbjct: 178 LVKEDIIKLLELNKPFELTSSFDRPNLYFEVRKPE---NKLHETEMYLREHVGESGVIYC 234
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D+L L G+ C YHAGL++ RSS DD++ R V++AT AFGMGID+
Sbjct: 235 ATRKGVDDLYERLLRLGLPCTKYHAGLSEAERSSNQDDFLYDRVSVMIATNAFGMGIDKP 294
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PK+ME +YQE+GRAGRD ++ +L +G D
Sbjct: 295 NVRFVLHYNMPKNMEGYYQEAGRAGRDGEEAQCILLFGTQD 335
>gi|198454689|ref|XP_001359676.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
gi|198132910|gb|EAL28826.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
Length = 1349
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 221/358 (61%), Gaps = 7/358 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 577 LMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 636
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS M IY DL+S P ++LLYVTPE ++++
Sbjct: 637 PLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYVTPEKISSSA 696
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 697 RFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 756
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L+N SSFNR NL Y+V K +DD A + ++
Sbjct: 757 PRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGASTIDDMSA---YIRTKPPNSSG 813
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CDE++ + G+ AYHAGL D R DW++++ +V+ AT+AFGMG
Sbjct: 814 IIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVICATIAFGMG 873
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
ID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ +++
Sbjct: 874 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEVADCILYYNYSDMLRLKKMMDGDKA 931
>gi|325268722|ref|ZP_08135351.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
gi|324988966|gb|EGC20920.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
Length = 727
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 215/345 (62%), Gaps = 9/345 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +LSG D F LMPTGGGKS+CYQ+P+L G +VVSPLIA
Sbjct: 11 LKHYFGFDKFKGDQEAIIRNLLSGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTATA K
Sbjct: 129 IAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIEAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMEDLDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE 349
>gi|339243055|ref|XP_003377453.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
gi|316973743|gb|EFV57302.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
Length = 605
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 213/350 (60%), Gaps = 5/350 (1%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG--IVLV 83
L + L+ FG FR QL A+ A+LSGRD M TGGGKS+ YQ+PA+ LV
Sbjct: 74 LSEKLKSIFGMNSFRPLQLSAMNAILSGRDVLLTMSTGGGKSLTYQLPAVLGNASQFTLV 133
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPL++LME+QVI L +GI L + +I +++S RLLYVTPE L
Sbjct: 134 ISPLVSLMEDQVISLNTRGIEAVLLYQHTPPEEMKRILAEMNSPGCKFRLLYVTPERLAK 193
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ FM+KL+K + GLL L+AIDE HC S WGHDFRP Y+ L LR PD PIL LTAT
Sbjct: 194 SKRFMAKLEKAYQAGLLKLIAIDEVHCCSQWGHDFRPDYKFLGVLRRQFPDTPILGLTAT 253
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTC 260
A V +D+ E L + L ++SFNRPNLFY+V+ K D ++ +C +LK
Sbjct: 254 ATVAVLQDIKEILNIPMALEFRASFNRPNLFYQVQQKPDRPEELLQIVCKLLKGQFSGQS 313
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + + + L G+ YHA ++ R V W+S++ QV+VATVAFGM
Sbjct: 314 GIIYCFSKKDSETFAQNLRTNGVKAEHYHADMDPNERGMVHRKWLSNKCQVIVATVAFGM 373
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
GID+ DVR+V H +PKS+E +YQESGRAGRD P+ LLY+G D R+
Sbjct: 374 GIDKADVRVVIHLALPKSVENYYQESGRAGRDGQPASCLLYFGFADLFRL 423
>gi|374328402|ref|YP_005078586.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
gi|359341190|gb|AEV34564.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
Length = 612
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 227/363 (62%), Gaps = 8/363 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q I +V++G C LMPTG GKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 18 VLKKVFGYDAFRGNQQVVIDSVMAGESCCVLMPTGAGKSLCYQVPALCRRGVGIVVSPLI 77
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++Q+ L+E G+ ++S + Y DL +G+ L LLYV PE P F+
Sbjct: 78 ALMQDQIATLRELGVRATSINSALSYDEVQAAYRDLRAGE--LDLLYVAPERLVRPEFVG 135
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L++++ RGL+ L+AIDEAHCIS WGHDFRP YR+L+++R L VP LA+TATA +
Sbjct: 136 LLEELNQRGLIALLAIDEAHCISQWGHDFRPEYRELTNVRAKLEGVPCLAVTATADEPTR 195
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
KD+ E L L P ++ S F+RPN+ Y V K + L LK I+YCL
Sbjct: 196 KDIQERLNL--PRLISSGFDRPNITYTVGIKH---NPKQQLRRFLKERPAGESGIIYCLS 250
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E +A+L G YHAG ++ R + D +I ++VATVAFGMGID+ +V
Sbjct: 251 RKKVEETAAWLVEEGFDALPYHAGFDNSVREANQDRFIKEEGLIMVATVAFGMGIDKPNV 310
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PK++EA+YQE+GRAGRD LPS++ + YGM D + ++ ++++ +Q
Sbjct: 311 RFVAHLDLPKNIEAYYQETGRAGRDGLPSEAWMIYGMQDVVLLNQMIDRSEAPENQKQIE 370
Query: 388 RER 390
R++
Sbjct: 371 RQK 373
>gi|345485326|ref|XP_001600102.2| PREDICTED: ATP-dependent DNA helicase Q5 [Nasonia vitripennis]
Length = 1040
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 273/502 (54%), Gaps = 44/502 (8%)
Query: 30 LRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPG-IVLVVSP 86
L+ FGH ++ D Q A +AV G +D + MPTG GKS+C+Q+PA+ K +V+SP
Sbjct: 15 LKSQFGHDNYKSDLQRKAAEAVYKGEKDVYICMPTGSGKSLCFQLPAVTKENSYAIVISP 74
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIAL++NQ+ L K I L+S T ++ I D+ S KP ++LLYVTPEL T F
Sbjct: 75 LIALVKNQLDYLNSKNIVAHTLNSKTTKNMRLAIKTDMLSSKPKMKLLYVTPELCDTSTF 134
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L +I +L+ IDEAHC+S WGHDFRPSYRKL LR P+VPI+ALTATAA +
Sbjct: 135 QLMLSQIKP-NVLSYFVIDEAHCLSQWGHDFRPSYRKLIELRKKRPEVPIIALTATAAKE 193
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV----LKANGDT--- 259
V++D+ ++L +++P++ + R NLFY+V + D + D + L L N D+
Sbjct: 194 VKEDIFKTLKMESPMIFSTPVFRTNLFYDVWFIDAIPDPFEHLKKFINDSLGPNDDSVPK 253
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C I+YC ++ T + L+ LS+ GI +YHAGL K R V D W + V+ AT
Sbjct: 254 EKKNCGIIYCRKKETTETLARKLSSMGIPTLSYHAGLKSKERMEVQDSWTNGVVPVIAAT 313
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+FGMG+D+ VR V H+ +P+++ ++YQESGRAGRD S +Y+ ++ + F+
Sbjct: 314 CSFGMGVDKGSVRFVAHWTVPQTIASYYQESGRAGRDGKQSYCRVYFSREEFNAISFLC- 372
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVL 435
Q+ + ST S KS D+ Q K F ++ + F +
Sbjct: 373 --QNAAEEELST---SQYKSRQDYQQA---KMKSFKQI-------------VESFTGVKC 411
Query: 436 LYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGG 495
+ F PV CKN CD CK+ + + + + S+ NH+S+ + + G
Sbjct: 412 RHALFSKYFGDPVPQCKNRCDVCKNKDAVREKILHFESS----NHYSRPKNRKEPLESFG 467
Query: 496 --QYSEF-WNRDDEASGSEEDI 514
+Y ++ D E SG E +
Sbjct: 468 MDKYDNVTYDSDSEGSGEREQL 489
>gi|325855159|ref|ZP_08171782.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
gi|325483896|gb|EGC86840.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
Length = 727
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 153/345 (44%), Positives = 216/345 (62%), Gaps = 9/345 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 11 LKHYFGFDKFKGNQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPALIMEGTAIVISPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEVDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTATA K
Sbjct: 129 IAFLRSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGLCIVFYSKKDLNKLE 349
>gi|357059803|ref|ZP_09120582.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355377445|gb|EHG24664.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 726
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 223/366 (60%), Gaps = 13/366 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ + L+ +FG F+ Q D I ++LSG+D F LMPTGGGKSMCYQ+P+L G
Sbjct: 3 ERSEIHNALKKYFGFDCFKKNQEDIILSLLSGKDVFVLMPTGGGKSMCYQLPSLLMQGTA 62
Query: 82 LVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
+V+SPLIALM+NQV ++ E G+A FL+S+ + D+ SGK +LLYV
Sbjct: 63 IVISPLIALMKNQVDAIRHICEEDGVA-HFLNSSLNKGDIDHVKLDILSGKT--KLLYVA 119
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE A ++ K I ++ A+DEAHCIS WGHDFRP YR + + + + PI+
Sbjct: 120 PESLAKREYVEFFKTIK----ISFYAVDEAHCISEWGHDFRPEYRNIRVVIDEIERAPII 175
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA KV+ D+ +SL +Q+ KSSFNR NL+YEVR K + ++ + ++ N
Sbjct: 176 ALTATATDKVRFDIKKSLAIQDAEEFKSSFNRANLYYEVRPK--TKEINKEIVTFIRQNA 233
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R T DEL+ L A I YHAGL RS D ++ V+VAT+A
Sbjct: 234 GKSGIIYCLSRKTVDELAKVLQANEIKAKPYHAGLEPDERSQTQDLFLMQDIDVIVATIA 293
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H++IPKS+E +YQE+GRAGRD K + +Y DD +++E + K
Sbjct: 294 FGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDDGEGKCITFYSPDDLKKLEKFMEKK 353
Query: 378 QSKNSQ 383
+ +
Sbjct: 354 GEQERE 359
>gi|170078505|ref|YP_001735143.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
gi|169886174|gb|ACA99887.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
Length = 712
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 226/381 (59%), Gaps = 9/381 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ FR Q I A L RD LMPTG GKS+C+Q+PAL KPG+ +V+
Sbjct: 6 SLEAALKHFFGYDNFRHGQKAVITAALENRDILALMPTGAGKSLCFQLPALLKPGLTVVI 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L + GI FL+ST + Q +++I + +++LLYV PE
Sbjct: 66 SPLIALMQDQVDALTDNGIGATFLNSTLNLDQARSRIQAIFNG---NIKLLYVAPERLFN 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
GF L + L +DEAHC+S WGHDFRP YR+LS +R P P A TATA
Sbjct: 123 EGFQQLLTDVDQTIGLTGFVVDEAHCVSEWGHDFRPEYRQLSRIRRRYPRTPCQAFTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L LQNP +SFNRPNL+YEV K + +Y L ++ I+
Sbjct: 183 TQRVREDIIDQLALQNPSFHCTSFNRPNLYYEVLPK--VRKSYTQLLCYVRQRRGQPGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+ L G+ YHAGL D+ R+ + +I V+VATVAFGMGI+
Sbjct: 241 YCSSRKKVDELADRLKQDGVKALPYHAGLADRLRADYQEQFIRDDVPVMVATVAFGMGIN 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P ++E +YQESGRAGRD P+ L+Y D +R E+ + + + +
Sbjct: 301 KPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYRAGDIKRAEYFIELKEDEQEK 360
Query: 384 SFSTRERSSKKSISDFSQVLD 404
+ ++ + + D+++ +D
Sbjct: 361 RIAYQQ---LQKMIDYAEGID 378
>gi|387015566|gb|AFJ49902.1| ATP-dependent DNA helicase Q1 [Crotalus adamanteus]
Length = 652
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/345 (43%), Positives = 214/345 (62%), Gaps = 3/345 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG FR QL+ I A ++GRD F +MPTGGGKS+CYQ+PA PG LV+ PLI
Sbjct: 82 VLQKSFGLQNFRPLQLETINATMAGRDVFLVMPTGGGKSLCYQLPAEGSPGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ G++ L+++ + + ++ ++ S L+LLYVTPE A + FM
Sbjct: 142 SLMEDQLMMLEQLGVSATLLNASSSKEHVKWVHAEMLSRNSQLKLLYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
SKL+K + G L +A+DE HC S WGHDFRP Y+ L L+ P+ P++ LTATA V
Sbjct: 202 SKLEKAYQTGQLTRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNAPLIGLTATATGHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
+D LC+ ++ +SFNRPNL+YEVR K + D+ ++ I+YC
Sbjct: 262 LRDAQNILCVPKCIIFTASFNRPNLYYEVRQKPSSAQNCIEDIVKLINGRYKGLSGIIYC 321
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ ++++ L GI YHA + K +S V W ++ QVVVATVAFGMGID+
Sbjct: 322 FSQKDAEQVTMSLQKLGIKAGTYHANMEPKDKSRVHKRWCANEIQVVVATVAFGMGIDKP 381
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
DVR V H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 382 DVRFVIHHSMSKSMENYYQESGRAGRDDQRADCILYYGFGDIFRI 426
>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
Length = 602
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 219/329 (66%), Gaps = 9/329 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L G+ FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGVEAGFLNSTQTFEEQQDVEQKALSGQ--LKLLYLSPEKVMTQGFF----RF 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFR Y L +LRN P+VP++ALTATA P + D+++
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRSEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K +G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPMEQLAKFIS--KQHGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+A IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLAARKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
++P+S+E++YQE+GRAGRD LPS+++L+Y
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFY 335
>gi|321476989|gb|EFX87948.1| DNA helicase RecQ5 [Daphnia pulex]
Length = 997
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 174/510 (34%), Positives = 275/510 (53%), Gaps = 44/510 (8%)
Query: 24 EALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPG-I 80
E ++K L FGH F+ Q DA+ AV+ G D F MPTG GKS+CYQ+PA+ K +
Sbjct: 7 ETVLKTLEDKFGHTDFKSTLQKDAVLAVVQGSGDVFVSMPTGSGKSLCYQLPAVIKERCV 66
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL+AL+ +Q+ L ++ I E ++S ++ K ++ DL + P+ +LLY+TPE
Sbjct: 67 AIVVSPLLALITDQIEHLLKRKIVAETINSKMLVEDKRRVCNDLKTKCPNTQLLYITPEQ 126
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT F L +H ++ +DEAHC+S WGHDFRP Y KL LR D+P +ALT
Sbjct: 127 AATSTFQEILAHLHKHKQISYFVVDEAHCVSQWGHDFRPDYLKLGKLREKYMDIPCIALT 186
Query: 201 ATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADL----CSVLKA 255
ATA +V+KD+ E L L++P+ K+S R NLFY++ +++ D DL L
Sbjct: 187 ATATAQVEKDIYEQLSLKSPVARFKTSCFRSNLFYDIAFQNTSADPETDLSLYASEWLGD 246
Query: 256 NGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
+ DT C I+YC R + L+ L+ GI AYHAGL D+ R+ V D+W++ +
Sbjct: 247 DWDTQPLKTRPCGIIYCRTRESTGTLAEILTKKGIHTKAYHAGLKDRERAEVQDEWMTGK 306
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+ AT++FGMG+D+ VR V H+ +P+S+ +YQESGRAGRD PS ++Y +R
Sbjct: 307 IPVITATISFGMGVDKASVRFVAHWCMPQSVAGYYQESGRAGRDGQPSGCRIFYSRKERN 366
Query: 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIG 428
+EF+L ++ SK ++ + E+ +K+ + + ++ R+ + R+
Sbjct: 367 AVEFLLKQDVSKKTKKGAKYEKQAKQMMKSYEAMV-----RYCEIPQCRH---------- 411
Query: 429 WFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISS 488
+S + P C+ CD C P S+ + K +F
Sbjct: 412 -------AIFSSYFGDSPPD--CQKKCDFCLDPKATEDKTQAYFSSDVGKVPSLNLFDDD 462
Query: 489 QDMTDGG-----QYSEFWNRDDEASGSEED 513
D+ GG + ++++ + E G ++D
Sbjct: 463 SDLYGGGRRGQEKEADYYRKSKEEGGPKKD 492
>gi|282878161|ref|ZP_06286958.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
gi|281299739|gb|EFA92111.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
Length = 725
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 216/355 (60%), Gaps = 11/355 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK L + L+ +FG F+ +Q I+ +L+G F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAEKVNLTEKLKLYFGFDAFKGEQEAIIKHLLAGNSAFVLMPTGGGKSLCYQLPSLIMKG 60
Query: 80 IVLVVSPLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+VVSPLIALM+NQV G+ E+ FL+S+ ++ +D+ SG+ +LLYV
Sbjct: 61 TAIVVSPLIALMKNQVDVINGISEEEGVAHFLNSSLNKAAIQQVMDDVRSGRT--KLLYV 118
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE + LK + ++ AIDEAHCIS WGHDFRP YR + N + D P+
Sbjct: 119 APESLNKEENIEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPV 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA KV+ D+ SL + + KSSFNRPNL+YEVR K D + ++ +
Sbjct: 175 IALTATATDKVRTDIKRSLGIADAREFKSSFNRPNLYYEVRQK--ASDIDRQIIMFIRQH 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+
Sbjct: 233 EGKSGIIYCLSRKKVEELSEVLKANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 293 AFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICVAFYARKDLKKLE 347
>gi|390343347|ref|XP_786769.3| PREDICTED: ATP-dependent DNA helicase Q1 [Strongylocentrotus
purpuratus]
Length = 980
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 210/350 (60%), Gaps = 5/350 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG ++R Q + A LSGRD LMPTGGGKS+CYQ+PAL G LVVSPL++LME+
Sbjct: 96 FGIKKYRPLQEKTMNASLSGRDVILLMPTGGGKSLCYQLPALVSKGFTLVVSPLLSLMED 155
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
Q + L+E G+ L+S + ++ + + L+LLYVTPE + + FM+ L+K
Sbjct: 156 QTMALEEIGVNATVLNSNTPPESVKDVHRQMIDARSELKLLYVTPEKIAKSKRFMACLEK 215
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ LL +AIDE HC S WGHDFRP Y+ L L+ D PIL LTATA V DV
Sbjct: 216 AYKANLLTRIAIDEVHCCSQWGHDFRPDYKILGLLKRQFTDTPILGLTATATMDVLDDVK 275
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---TCAIVYCLERT 269
L LQ V ++ FNRPNLFYEVR K + + L NG+ I+YC R
Sbjct: 276 GILGLQGCQVFRAGFNRPNLFYEVRPKPSKQAEFVEELIKL-INGEFKGQSGIIYCFSRK 334
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++ L GGI YHA L+ + RS V +W + QVVVATVAFGMGID+ DVR
Sbjct: 335 DTETMAENLKKGGIQAHPYHAMLDAQYRSQVHRNWKENNIQVVVATVAFGMGIDKPDVRF 394
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
V H +I KSME +YQESGRAGRD P++ ++YYG+ D R ++ Q+
Sbjct: 395 VIHHSISKSMENYYQESGRAGRDDEPARCIVYYGIGDVFRQSTMVVTEQT 444
>gi|365833970|ref|ZP_09375421.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
gi|364570619|gb|EHM48223.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
Length = 612
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I A ++GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMEGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G++ L+STQ + + ++Y SG +++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVSAACLNSTQNREQQQEVYAGCRSG--AIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP Y L ++ PD+P++ALTATA
Sbjct: 133 DQLPHWNP----ALLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATADDAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+ L L +PLV SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKPL-----DQLIRFVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G S AYHAGL+ + RSSV D + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++EA+YQE+GRAGRD LP++++L Y
Sbjct: 304 NVRFVVHFDIPRNIEAYYQETGRAGRDGLPAEAVLLY 340
>gi|349702223|ref|ZP_08903852.1| ATP-dependent DNA helicase RecQ [Gluconacetobacter europaeus LMG
18494]
Length = 611
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 223/350 (63%), Gaps = 9/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSEQEADDGARVRSDLMAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P+VP +ALTATA + + D+++
Sbjct: 137 ----TLSIIAIDEAHCISAWGHEFRPEYRELAALPQHFPNVPRIALTATADARTRTDILD 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL V+ K L +L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVKPK---TSELRQLTGILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 IARSLAGKGYVALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGEQAETVLLYGGDDMARARYWLEQSNAPEAQ 359
>gi|417228931|ref|ZP_12030689.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
gi|386208266|gb|EII12771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
Length = 611
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 220/337 (65%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+L SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLILISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|406603614|emb|CCH44869.1| bloom syndrome protein [Wickerhamomyces ciferrii]
Length = 1521
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 226/354 (63%), Gaps = 8/354 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV----LVVS 85
LR F + FR QL+A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G+ +VVS
Sbjct: 696 LRQIFKLSSFRQNQLEAVNATLSGKDTFVLMPTGGGKSLCYQLPAVVKSGVTHGTTIVVS 755
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L EK I ++S + + + + G L L+Y++PE+ +A+
Sbjct: 756 PLISLMQDQVEHLWEKNIKAGMINSKGSPEERRTTFNLFVDG--FLDLVYLSPEMISASN 813
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ + +++ +G L V +DEAHC+SSWGHDFRP Y+ LS + P++P++ALTATA
Sbjct: 814 QAKNAIDRLYRQGKLARVVVDEAHCVSSWGHDFRPDYKHLSYFKTNYPEIPVMALTATAN 873
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
V+ D++ +L L++P+ LK SFNR NLFYEV KD + ++ S+L D I+Y
Sbjct: 874 DHVKMDIIHNLNLKDPVFLKQSFNRTNLFYEVLNKDKDHMKHIEM-SILGKFKDQTGIIY 932
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C + C++ S L GI CA YHAG+ + R + W + +V+ AT+AFGMGID+
Sbjct: 933 CHSKNACEQTSDKLINSGIKCAFYHAGMTPEDRLDIQKAWQNGTIKVICATIAFGMGIDK 992
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
DVR V H +P+++E +YQE+GRAGRD S ++YG D R ++ ++S+++
Sbjct: 993 ADVRFVIHLTLPRTLEGYYQETGRAGRDGNYSYCTMFYGFRDARTLQNMISRDK 1046
>gi|88861126|ref|ZP_01135760.1| ATP-dependent DNA helicase [Pseudoalteromonas tunicata D2]
gi|88816848|gb|EAR26669.1| ATP-dependent DNA helicase [Pseudoalteromonas tunicata D2]
Length = 605
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 231/362 (63%), Gaps = 17/362 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I A G+D LMPTGGGKS+CYQIPALA PGI +VVSPL
Sbjct: 15 QVLKEVFGYDQFRTGQDLVITAATQGQDTLVLMPTGGGKSLCYQIPALALPGITIVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G++ E L+ + T + IY+DL +GK ++LLYV PE F+
Sbjct: 75 ISLMQDQVAQLKALGVSAECLNQSLTREQSMAIYQDLHAGK--IKLLYVAPERLLLADFI 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++L AIDEAHC+S WGHDFRP Y +L+ L+ Y P +PI+ALTATA
Sbjct: 133 ERLHHLP----VSLFAIDEAHCVSHWGHDFRPHYFQLNRLKEYFPAIPIMALTATADTAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+++ L L +P + SF+RPN+ Y E ++K L + L LKA I+YC
Sbjct: 189 RHDIVQQLRLNSPYIYTGSFDRPNIRYTLEEKFKPL-----SQLIRYLKAQPGQSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DE+SA L G + AAYHAGL ++ RS V + +VVATVAFGMGI++
Sbjct: 244 TSRKRVDEISAKLVEAGFNAAAYHAGLENQQRSFVQTAFAKDDIHIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEFILSKNQSKN 381
+VR V H++IPK++E++YQE+GRAGRD L ++++LY+ D +R E I+ + + K
Sbjct: 304 NVRFVIHYDIPKNIESYYQETGRAGRDGLAAEAILYFDPADIPRVKRFFEDIVDEQRKKV 363
Query: 382 SQ 383
Q
Sbjct: 364 EQ 365
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 224/361 (62%), Gaps = 9/361 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ K+L +FG+ +FR Q D I +L +D F +MPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 1 MYKILHKYFGYEEFRSHQKDIITDILDKKDTFVVMPTGGGKSLCYQLPALLMEGVTIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV L+ GI+ L+ST Q +I DL + + +LY+TPE
Sbjct: 61 PLISLMKDQVDELRSNGISAACLNSTLGYQESNQICNDLLYNR--IDVLYITPERLTMSK 118
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+ ++ +NL AIDEAHCIS WG DFRP Y +L+ L+ PD+P++ALTATA P
Sbjct: 119 TLDFLESVN----INLFAIDEAHCISEWGQDFRPEYLRLNMLKKKFPDIPLIALTATATP 174
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ DV+ L L++ SSFNR NL+YEVR+K DAY + LK + I+YC
Sbjct: 175 RVQNDVISLLELEDCRRYISSFNRDNLYYEVRHKK---DAYKQMVRYLKTHRKYNGIIYC 231
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++L L G YHAGL K R + +I Q++VAT+AFGMGI++
Sbjct: 232 QSRRAVEDLYNKLKKEGFRVLPYHAGLPAKIREENQESFIRDDVQIIVATIAFGMGINKP 291
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+++PK++E +YQ++GR GRD L +L++ DR ++E+ +++ K+ +
Sbjct: 292 NVRFVIHYDLPKNLENYYQQTGRGGRDGLDCDCILFFSYGDRYKIEYFINQKSRKSERDI 351
Query: 386 S 386
+
Sbjct: 352 A 352
>gi|332304550|ref|YP_004432401.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
gi|332171879|gb|AEE21133.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
Length = 599
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 214/352 (60%), Gaps = 10/352 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + A +L+ FG+ FRD Q + I+ +L G+D LMPTGGGKS+CYQIPAL
Sbjct: 2 PSTDINAAQNVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLE 61
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L G++ +++S + + +Y + G+ +L+YV P
Sbjct: 62 GLTIVISPLIALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGR--YKLIYVAP 119
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ +L ++ + L A+DEAHC+S WGHDFR YR+L ++ P VP++
Sbjct: 120 ERLMQFDFIQRLHSLN----VALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPGVPVVG 175
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + D+++ L L+ P V K SF+RPN +RY L D D
Sbjct: 176 LTATADITTRSDILQQLALEQPFVFKGSFDRPN----IRYNQLFKYKATDQVIQYVKQQD 231
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R D+LS L+ GI+CA YHAGL R + D+I ++VATVAF
Sbjct: 232 GSGIIYCNSRKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAF 291
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
GMGI++ +VR V HF++P+S+EA+YQE+GRAGRD +P+++LL + D R+
Sbjct: 292 GMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARI 343
>gi|398793349|ref|ZP_10553767.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
gi|398210961|gb|EJM97590.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
Length = 608
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 219/335 (65%), Gaps = 9/335 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I+ LSGRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLQDTFGYQQFRPGQQNIIETALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQT + + +++ D +GK L+LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRTGK--LKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + + ++A+DEAHCIS WGHDFRP Y + LR + PD+P++ALTATA
Sbjct: 133 DSLHQWNP----VMLAVDEAHCISQWGHDFRPEYGSIGQLRQHFPDLPVMALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ L + +PL+ SSF+RPN+ Y + K L ++ I+YC
Sbjct: 189 RNDIAHLLQMDDPLIQISSFDRPNIRYTLVEK---FKPTEQLLRYVQDQRGKSGIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +A L + G+S AYHAG++ R+SV + + Q+VVATVAFGMGI++ +V
Sbjct: 246 RAKVEDTAARLQSRGLSVGAYHAGIDSAQRASVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 340
>gi|325300153|ref|YP_004260070.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324319706|gb|ADY37597.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 727
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 222/350 (63%), Gaps = 13/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q I+ +L+G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LAAQLKKYFGFDTFKGNQEAIIRNLLAGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ T ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNYSEEDGVA-HFINSSLTKSAIDQVKADILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLKHVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKV+ D+ ++L + + + KSSFNRPNL+YEVR K + D D+ +K N +
Sbjct: 180 TATPKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRSKTVNIDK--DIIRFIKQNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI YHAG++ R++ D ++ V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGIKARPYHAGMDSATRNANQDAFLKEDIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 298 IDKPDVRFVIHYDMPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE 347
>gi|91786081|ref|YP_547033.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. JS666]
gi|91695306|gb|ABE42135.1| ATP-dependent DNA helicase RecQ [Polaromonas sp. JS666]
Length = 633
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 216/345 (62%), Gaps = 13/345 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG+++FR Q ++ V+ G D LMPTGGGKS+CYQIPA+ A G+ +V+SPLIA
Sbjct: 25 FGYSEFRGPQEAIVEHVVQGGDALVLMPTGGGKSLCYQIPAIVRQNAGHGVTVVISPLIA 84
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM +QV L E G++ FL+STQ+ + +++ + L + L LLY PE TP
Sbjct: 85 LMHDQVGALHEAGVSAAFLNSTQSFEESSQLEKQLL--RNELTLLYAAPERINTPRMKGL 142
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L +H RGLL+L AIDEAHC+S WGHDFRP YR LS L PDVP +ALTATA ++
Sbjct: 143 LASLHERGLLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHETFPDVPRIALTATADALTRQ 202
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLER 268
D++E L L++ SSF+RPN+ Y + K D L +++ + IVYC R
Sbjct: 203 DMIERLKLEDAREFVSSFDRPNIRYTIVEK---ADPTRQLLRFIESEHEGEAGIVYCQSR 259
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++A L G+ AYHAGL+ R D ++ V+VAT+AFGMGID+ DVR
Sbjct: 260 KRVEEIAATLQDAGLKALAYHAGLDASLRQQRQDRFLREDGVVMVATIAFGMGIDKPDVR 319
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
V H ++PK++E +YQE+GRAGRD LP+ + + YG+ D +RRM
Sbjct: 320 FVAHLDMPKNIEGYYQETGRAGRDGLPANAWMAYGLQDVVNQRRM 364
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 235/382 (61%), Gaps = 18/382 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + LR FG+ FR Q + I A LSG+D +M TG GKS+CYQIPAL PG+ L
Sbjct: 12 KTTALHTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTL 71
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L+ GI +FL+S+QT + + ++ L SG+ L+LLYV+PE
Sbjct: 72 VISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQ--LKLLYVSPEKVM 129
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+ PI+ALTAT
Sbjct: 130 TNSFF----QLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTAT 185
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L L NP SF+RPN+ Y E ++K + L + A
Sbjct: 186 ADYATRQDILTHLKLDNPHKYIGSFDRPNIRYTLEEKFKPM-----EQLTRFVLAQKGKS 240
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R+ + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFGM
Sbjct: 241 GIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGM 300
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ +L K ++
Sbjct: 301 GINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPET 360
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
Q E+ ++I +F++
Sbjct: 361 PQRQI----EQHKLEAIGEFAE 378
>gi|377579442|ref|ZP_09808410.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
gi|377539235|dbj|GAB53575.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
Length = 609
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I VL GRDC +MPTGGGKS+CYQIPAL K G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIINTVLDGRDCLVVMPTGGGKSLCYQIPALVKAGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQT + + +GK +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQTRDEQQAVMAGCRTGK--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L IH ++ +A+DEAHCIS WGHDFR Y L LR+ PDVP +ALTA
Sbjct: 127 MLDNFLDQL--IHWNPVM--LAVDEAHCISQWGHDFRREYALLGQLRDRFPDVPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADETTRRDIVNLLGLHDPLIQISSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R ++ +A L + GIS AAYHAGL + R++V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENDVRANVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|303253309|ref|ZP_07339458.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307248139|ref|ZP_07530167.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302647991|gb|EFL78198.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306855316|gb|EFM87491.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 602
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 220/333 (66%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LVVSPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVVSPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQTFEEQRLVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LR+ P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPMEQLAKFIS--KQQGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L++ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 339
>gi|409098551|ref|ZP_11218575.1| ATP-dependent DNA helicase RecQ [Pedobacter agri PB92]
Length = 729
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 217/352 (61%), Gaps = 13/352 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG F+ Q I +L G + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 KKSLFDNLQNFFGFDNFKGDQESIITNILEGNNTFVIMPTGGGKSICYQLPALMSEGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ T++ DL SG+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEITQVKSDLLSGQT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
A + L I ++ VA+DEAHCIS WGHDFRP YRK+ + L ++PI+A
Sbjct: 122 SLAKQDNIEFLNLIK----ISFVAVDEAHCISEWGHDFRPEYRKIKQVIAGLGNNIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+M++L + + KSSFNRPNLFYE+R K D ++ +K+N
Sbjct: 178 LTATATPKVQQDIMKNLGMTEATLFKSSFNRPNLFYEIRPKR---DITKEIIKYIKSNPG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GIS YHAGL K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEVAEALNLNGISALPYHAGLEPKVRAETQDKFLMEDAEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
GMGID+ DVR V H ++PKSME +YQE+GRAGRD + +Y D ++
Sbjct: 295 GMGIDKPDVRFVIHHDVPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKL 346
>gi|258647142|ref|ZP_05734611.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
gi|260853106|gb|EEX72975.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
Length = 726
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 221/348 (63%), Gaps = 14/348 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
KLL + FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G+ +++SPL
Sbjct: 10 KLLSY-FGFDSFKSNQEAIIRTLLNGEDVFVLMPTGGGKSLCYQLPSLLMDGVAIIISPL 68
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ + GIA F++S+ T ++ +D+ +GK +LLYV PE
Sbjct: 69 IALMKNQVDAIRHTSEDDGIA-HFINSSLTKGAIDQVKDDIRTGKT--KLLYVAPESLTK 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALTATA
Sbjct: 126 REQVEFLQSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRPIIDEIGRAPIIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
KV+ D+ ++L + N KSSFNRPNL+YEVR K D D+ + + N I+
Sbjct: 182 TDKVRLDIKKNLGILNAKEFKSSFNRPNLYYEVRSK--TKDIDKDIITYIHHNKGKSGII 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L A I AAYHAG++ + RS DD++ ++VAT+AFGMGID
Sbjct: 240 YCLSRKKVEELAEVLRANNIKAAAYHAGMDPQTRSQTQDDFLMESIDIIVATIAFGMGID 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+ DVR V H++IPKS+E +YQE+GRAGRD L +Y DD +++E
Sbjct: 300 KPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGVCLAFYSPDDLKKLE 347
>gi|409124316|ref|ZP_11223711.1| ATP-dependent DNA helicase RecQ [Gillisia sp. CBA3202]
Length = 731
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 220/351 (62%), Gaps = 14/351 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEQVIKSIVNKHNTFVIMPTGGGKSLCYQLPALIEEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS ++K ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLNKSEIK-QVKEDITNG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LTATA
Sbjct: 129 NVEFLRGVE----ISFMAVDEAHCISEWGHDFRPEYRNLKHIIKRIGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YE+R K + +D+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGITDAKTFKASFNRPNLYYEIRPK--TKNVDSDIIRFVKQNEGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R D +I VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRIKHQDMFIMEDIDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 303 PDVRFVIHNDIPKSLESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMS 353
>gi|410639269|ref|ZP_11349819.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
gi|410648965|ref|ZP_11359360.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410131472|dbj|GAC07759.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410141191|dbj|GAC08006.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
Length = 604
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 214/352 (60%), Gaps = 10/352 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + A +L+ FG+ FRD Q + I+ +L G+D LMPTGGGKS+CYQIPAL
Sbjct: 7 PSTDINAAQNVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLD 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L G++ +++S + + +Y + G+ +L+YV P
Sbjct: 67 GLTIVISPLIALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGR--YKLIYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ +L ++ + L A+DEAHC+S WGHDFR YR+L ++ P VP++
Sbjct: 125 ERLMQFDFIQRLHSLN----VALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPGVPVVG 180
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + D+++ L L+ P V K SF+RPN +RY L D D
Sbjct: 181 LTATADITTRSDILQQLALEQPFVFKGSFDRPN----IRYNQLFKYKATDQVIQYVKQQD 236
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R D+LS L+ GI+CA YHAGL R + D+I ++VATVAF
Sbjct: 237 GSGIIYCNSRKKVDDLSIALAKQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
GMGI++ +VR V HF++P+S+EA+YQE+GRAGRD +P+++LL + D R+
Sbjct: 297 GMGINKSNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARI 348
>gi|303236792|ref|ZP_07323371.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
gi|302482960|gb|EFL45976.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
Length = 750
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 217/350 (62%), Gaps = 11/350 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 30 LTEKLKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 89
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E G+A SS + ++ ++ D+ SGK +LLYV PE
Sbjct: 90 PLIALMKNQVDVINGISAEDGVAHYLNSSLKKTEI-DQVKVDIHSGKT--KLLYVAPESL 146
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ + + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTA
Sbjct: 147 NKEDSIEFFRTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDQIGKAPIIALTA 202
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA KV+ D+++SL ++ KSSFNR NL+YEVR K +D + +K N
Sbjct: 203 TATDKVRSDIVKSLGIEGCSEFKSSFNRANLYYEVRPKKNEEDTNRQIIKFIKQNQGKSG 262
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMG
Sbjct: 263 IIYCLSRKKVEELAAVLQANEIKAEPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMG 322
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y +D +++E
Sbjct: 323 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFYSKNDLKKLE 372
>gi|312091032|ref|XP_003146836.1| RecQ helicase [Loa loa]
Length = 970
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 229/391 (58%), Gaps = 12/391 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ G+ +V+S
Sbjct: 279 MYRVLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVIS 338
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S + +IY L+ P ++LLYVTPE + A+
Sbjct: 339 PLKSLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASE 398
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H RGLL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 399 KLNNVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 458
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDT 259
A PK+ D L +Q + SSF R NL Y+V K LL D +L
Sbjct: 459 ATPKIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLL--KVMDRMKILYPG--K 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R C+ ++ L + +S YHAGL+DK R V WI++R V+ AT+AFG
Sbjct: 515 SGIVYCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFG 574
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF+IPKS+E +YQE+GRAGRD L S + Y +D R+ ++
Sbjct: 575 MGIDKPDVRFVIHFSIPKSIEGYYQETGRAGRDGLNSYCAILYSYNDSVRIRKMIEGEN- 633
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGKRF 410
N+Q T SS I + + + + +++
Sbjct: 634 -NTQGVRTMHLSSVLEIVAYCENVSICRRKW 663
>gi|332662257|ref|YP_004445045.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332331071|gb|AEE48172.1| ATP-dependent DNA helicase, RecQ family [Haliscomenobacter
hydrossis DSM 1100]
Length = 632
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 227/346 (65%), Gaps = 10/346 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR ++GHAQFR +Q IQ+VL GRD L+PTGGGKS+C+Q+PAL +PGI +V+SP
Sbjct: 4 IDVLRQYWGHAQFRPQQEAIIQSVLDGRDTLALLPTGGGKSVCFQVPALCQPGICIVISP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L++KGI + + + ++ ++ G+ ++ LY++PE +
Sbjct: 64 LIALMKDQVQNLQKKGIPALAIYAGMAYRDIDRLLDNCVHGE--IKFLYLSPERLVSDLA 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+++K++ +NL+A+DEAHCIS WG+DFRP Y +++ +R + P +P++ALTATA P+
Sbjct: 122 RARIKQMK----VNLIAVDEAHCISQWGYDFRPPYLEIAKIREFFPQIPVMALTATATPE 177
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V KD+ E L ++ + +SSF+RPNL Y VR + +D ++ + +G +VY
Sbjct: 178 VVKDIQEKLEFKHQHLFQSSFSRPNLAYIVRPTEAKEDQLIEILQKVPGSG----VVYVR 233
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R E++ L IS YHAGL RS+ D W+S R +V+V+T AFGMGID+ D
Sbjct: 234 NRRRTKEVAQLLQKKRISADYYHAGLTPDERSAKQDAWVSGRTRVMVSTNAFGMGIDKPD 293
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VR V H +P S+EA++QE+GRAGRD S ++L Y +DRR +E+
Sbjct: 294 VRTVVHLELPDSLEAYFQEAGRAGRDGKKSFAVLLYNSNDRRSLEY 339
>gi|282860206|ref|ZP_06269280.1| ATP-dependent DNA helicase RecQ [Prevotella bivia JCVIHMP010]
gi|424899672|ref|ZP_18323214.1| ATP-dependent DNA helicase RecQ [Prevotella bivia DSM 20514]
gi|282587027|gb|EFB92258.1| ATP-dependent DNA helicase RecQ [Prevotella bivia JCVIHMP010]
gi|388591872|gb|EIM32111.1| ATP-dependent DNA helicase RecQ [Prevotella bivia DSM 20514]
Length = 727
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 215/349 (61%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG F+ +Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LIDNLKHYFGFDNFKGEQEAIIRHLLAGYDAFVLMPTGGGKSLCYQLPSLIMEGTAVVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E +L+S+ K+ D+ GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEGDGVAHYLNSSLKKAEVDKVRTDIREGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEDNIEFLKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRNAIEVIGRAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL ++ +SSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATAKVRTDIVRSLGIEGCAEFRSSFNRPNLYYEVRPKKSEDDTNKQIIRFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS D ++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLLANDIKAAPYHAGLDSEVRSKTQDQFLMEDIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD L++Y +D +++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICLVFYSRNDLKKLE 349
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 234/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 9 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 69 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 126
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 127 LDQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 182
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PLV SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 183 TRGDILRLLNLSQPLVQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 237
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 238 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 297
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 298 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQD 357
Query: 385 FSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 358 I---ERHKLNAMGAFAE 371
>gi|429107085|ref|ZP_19168954.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
gi|426293808|emb|CCJ95067.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
Length = 609
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|91772141|ref|YP_564833.1| ATP-dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
gi|91711156|gb|ABE51083.1| ATP dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
Length = 647
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 227/359 (63%), Gaps = 9/359 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ L+ +FG+++FR Q D I VL+ +D F LMPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 3 RTLQKYFGYSEFRPLQEDIINDVLNKKDVFVLMPTGGGKSICYQIPALIMDGLAVVVSPL 62
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV GL GI+ +L+ST + KI + G ++ +LYV PE M
Sbjct: 63 ISLMKDQVDGLVSNGISAAYLNSTLSYNEVQKITRAIVEG--NVDILYVAPERLC----M 116
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+++ S ++L AIDEAHCIS WGHDFRP YR++ L+ PDVP++ALTATA KV
Sbjct: 117 KSTQELLSHVNVSLFAIDEAHCISEWGHDFRPEYRRMGFLKKKYPDVPVIALTATATAKV 176
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+++ ++ L L +P V +SF+R NL YE+R K+ + Y D+ S LK I+YC
Sbjct: 177 KENTIKQLDLVSPSVYVASFDRANLSYEIRPKN---NTYGDMVSYLKGQRGNSGIIYCNS 233
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + + +S L+ G YHAGLND R + +I ++VATVAFGMGID+ +V
Sbjct: 234 RKSVESVSTKLNREGFHALPYHAGLNDAKRQDNQERFIRDDVDIIVATVAFGMGIDKPNV 293
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
R V H+++PK++E +YQE+GR GRD L +LY+ D ++++++ + K+ + +
Sbjct: 294 RFVIHYDLPKNLEGYYQETGRGGRDGLECDCILYFSRADWYKIKYLIDQKPKKSERDIA 352
>gi|298206967|ref|YP_003715146.1| ATP-dependent DNA helicase recQ [Croceibacter atlanticus HTCC2559]
gi|83849601|gb|EAP87469.1| ATP-dependent DNA helicase recQ [Croceibacter atlanticus HTCC2559]
Length = 698
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 149/342 (43%), Positives = 215/342 (62%), Gaps = 11/342 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
++ +LL+ HFG+ F+ Q I VLSG+D +MPTGGGKS+CYQ+PALAK G LV+
Sbjct: 7 SITQLLKTHFGYDSFKPNQEAIINDVLSGKDTLAIMPTGGGKSLCYQLPALAKEGTALVI 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L+ GI + +S+Q + + + + L G+ L L YV PE
Sbjct: 67 SPLIALMKDQVDALRANGITAAYYNSSQPEEEQQHVLQQLTKGE--LSLFYVAPE----- 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L+ S LNL+A+DEAHCIS+WGHDFRP+Y KL SL+ P +PI+ALTATA
Sbjct: 120 -SLPNLRHTISTITLNLIAVDEAHCISAWGHDFRPAYTKLGSLKQEFPQIPIIALTATAD 178
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
Q D+ + L + + +SF+R NLF +VR + L G I+Y
Sbjct: 179 KATQDDISKQLNISHAKKHLASFDRQNLFLDVRPGQ---SRIKQILKFLGPRGAQSGIIY 235
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++L+ L G AYHAGL+ + R+++ +D+++ ++VAT+AFGMGID+
Sbjct: 236 CLSRKSTEKLAQKLKQAGYKAKAYHAGLSPEDRANIQEDFVNDTTPIIVATIAFGMGIDK 295
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H+N+PK++E +YQE GRAGRD L + +LL+Y D
Sbjct: 296 SNVRWVIHYNMPKNIEGYYQEIGRAGRDGLKAHTLLFYSYAD 337
>gi|300917877|ref|ZP_07134511.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|432531614|ref|ZP_19768636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
gi|300414922|gb|EFJ98232.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|431066937|gb|ELD75555.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
Length = 611
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 220/337 (65%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
RT ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRTKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|393911582|gb|EJD76373.1| CBR-HIM-6 protein [Loa loa]
Length = 1044
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 229/391 (58%), Gaps = 12/391 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ G+ +V+S
Sbjct: 279 MYRVLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVIS 338
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S + +IY L+ P ++LLYVTPE + A+
Sbjct: 339 PLKSLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASE 398
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H RGLL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 399 KLNNVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 458
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDT 259
A PK+ D L +Q + SSF R NL Y+V K LL D +L
Sbjct: 459 ATPKIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLL--KVMDRMKILYPG--K 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R C+ ++ L + +S YHAGL+DK R V WI++R V+ AT+AFG
Sbjct: 515 SGIVYCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFG 574
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF+IPKS+E +YQE+GRAGRD L S + Y +D R+ ++
Sbjct: 575 MGIDKPDVRFVIHFSIPKSIEGYYQETGRAGRDGLNSYCAILYSYNDSVRIRKMIEGEN- 633
Query: 380 KNSQSFSTRERSSKKSISDFSQVLDVAGKRF 410
N+Q T SS I + + + + +++
Sbjct: 634 -NTQGVRTMHLSSVLEIVAYCENVSICRRKW 663
>gi|206578880|ref|YP_002241119.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
gi|206567938|gb|ACI09714.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
Length = 608
Score = 304 bits (778), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|417714622|ref|ZP_12363574.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|417719543|ref|ZP_12368424.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
gi|332998230|gb|EGK17832.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|333013771|gb|EGK33134.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
Length = 609
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 232/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D + L + Q Q
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKQQGQLQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|427722202|ref|YP_007069479.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
gi|427353922|gb|AFY36645.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
Length = 715
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/347 (44%), Positives = 214/347 (61%), Gaps = 6/347 (1%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q I+A L RD LMPTG GKS+C+Q+PAL K G+ +V+SPLIA
Sbjct: 11 LKHFFGYESFRPGQKTVIEAALQNRDVLALMPTGAGKSICFQLPALLKSGLTVVISPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L + GI FL+ST + Q +++I L+ GK ++LLYV PE GF
Sbjct: 71 LMQDQVDSLTDNGIGATFLNSTLNLNQARSRIQAILN-GK--IKLLYVAPERLFNEGFQE 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + L+ +DEAHC+S WGHDFRP YR+L+ LR P VP A TATA +V+
Sbjct: 128 FLNDVTDSVGLSGFVVDEAHCVSEWGHDFRPEYRQLARLRRNYPQVPCHAFTATATERVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L L P +SFNRPNL+YEV K +Y + + + I+YC R
Sbjct: 188 QDIITQLALHTPSFHCTSFNRPNLYYEVIPKS--SRSYDQVLKYTRKHRGKSGIIYCSSR 245
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE+S L GI+ YHAG++DKAR+S D +I V+VAT+AFGMGI++ DVR
Sbjct: 246 KKVDEISDRLKNDGINALPYHAGMSDKARASHQDQFIRDDVPVIVATIAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
V H+++P ++E +YQESGRAGRD P+ L Y + D ++ E+ +
Sbjct: 306 FVLHYDLPGNLERYYQESGRAGRDNEPADCALLYSVGDIKKAEYFIE 352
>gi|429102817|ref|ZP_19164791.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
gi|426289466|emb|CCJ90904.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
Length = 609
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGE--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|291614340|ref|YP_003524497.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
gi|291584452|gb|ADE12110.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
Length = 614
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 218/348 (62%), Gaps = 6/348 (1%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+A FR Q ++ V++G D LMPTGGGKS+CYQIPAL + G+ ++VSPL
Sbjct: 8 QILRDTFGYASFRGAQQAIVEHVVAGGDALVLMPTGGGKSLCYQIPALMRKGVGIIVSPL 67
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV LK+ G++ FL+S+ + ++ L + L+LLYV PE T GF+
Sbjct: 68 IALMQDQVDALKQLGVSAAFLNSSLEAEEAREVSRQL--MRCELKLLYVAPERLLTEGFL 125
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L++++ + L AIDEAHC+S WGHDFRP YR L+ L P VP +ALTATA
Sbjct: 126 NLLERLNQDNNIALFAIDEAHCVSQWGHDFRPEYRGLTVLHERFPSVPRIALTATADAPT 185
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCL 266
+ +V+E L L+ SSF+RPN+ Y V K D+A L L+ + D IVYCL
Sbjct: 186 RSEVVERLSLEQAEQFVSSFDRPNIRYRVTLK---DNARKQLQDFLETEHPDDAGIVYCL 242
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E +A+L G YHAGL+ RS ++ ++VATVAFGMGID+ +
Sbjct: 243 SRKKVEETAAWLKEQGWDALPYHAGLDAAVRSKNQKKFLREEGVIMVATVAFGMGIDKPN 302
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
VR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D M +L
Sbjct: 303 VRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVSMRQML 350
>gi|225010696|ref|ZP_03701166.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
gi|225005249|gb|EEG43201.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
Length = 647
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 218/350 (62%), Gaps = 20/350 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ +Q I+ VL+ + F +MPTGGGKSMCYQ+PAL + G +VVSPLIA
Sbjct: 12 LKQYFGFSEFKGRQEAVIKNVLAKKHSFVIMPTGGGKSMCYQLPALLQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
LM+NQV ++ G+A L+ T+ QVK+ + + +LLYV PE
Sbjct: 72 LMKNQVDAIRGVSANPGVAHVLNSSLTKTEIKQVKSDVVNGI------TKLLYVAPESLT 125
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ L + ++ VA+DEAHCIS WGHDFRP YR L + + + ++PI+ LTA
Sbjct: 126 KEENVAFLNTV----TVSFVAVDEAHCISEWGHDFRPEYRNLQRIIDRVGANIPIIGLTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V KSSFNRPNLFYEVR K + AD+ +K +
Sbjct: 182 TATPKVQEDIIKNLGITDATVFKSSFNRPNLFYEVRPK--TQNVEADIIRFVKQHVGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMG
Sbjct: 240 IIYCLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEEVDVVVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
ID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 300 IDKPDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLE 349
>gi|165976542|ref|YP_001652135.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|165876643|gb|ABY69691.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 602
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/333 (45%), Positives = 220/333 (66%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LR+ P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFIS--KQQGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L++ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 339
>gi|345885011|ref|ZP_08836404.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
gi|345042066|gb|EGW46174.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
Length = 727
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 216/349 (61%), Gaps = 9/349 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGKDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGIAHYLNSSLKKGEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENVEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIESIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHAGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILKANDIKAAPYHAGLDSETRSKAQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE 349
>gi|39996003|ref|NP_951954.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
gi|39982768|gb|AAR34227.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
Length = 603
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 215/340 (63%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR FG+ FR Q + + V G D F LMPTGGGKS+CYQIP+L +PG+ +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +ST + ++ L G+ L LLYV PE T F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGE--LDLLYVAPERLMTDAF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L++I + L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + + F+RPN+ Y V K + L L IVYCL
Sbjct: 180 TRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQ---KPFRQLEEFLATRPREAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G+ AYHAGL D RS V + ++ +VVVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PK++E++YQE+GRAGRD LP+++LL +G D
Sbjct: 297 VRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD 336
>gi|126208588|ref|YP_001053813.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250135|ref|ZP_07336337.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307246031|ref|ZP_07528113.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307250372|ref|ZP_07532320.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252754|ref|ZP_07534645.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307255013|ref|ZP_07536831.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307257169|ref|ZP_07538941.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307259449|ref|ZP_07541174.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307261598|ref|ZP_07543266.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126097380|gb|ABN74208.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|302651198|gb|EFL81352.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306852966|gb|EFM85189.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306857582|gb|EFM89690.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306859786|gb|EFM91808.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306861886|gb|EFM93862.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864331|gb|EFM96242.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306866385|gb|EFM98248.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868721|gb|EFN00530.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 602
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/333 (45%), Positives = 220/333 (66%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LR+ P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFIS--KQQGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L++ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 339
>gi|254361946|ref|ZP_04978077.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452745568|ref|ZP_21945402.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
gi|153093493|gb|EDN74473.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452086443|gb|EME02832.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
Length = 599
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 234/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN P+VP++ALTATA
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADLT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L + IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKFISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQ 401
++ ++I DF++
Sbjct: 355 I---KQHKLQAIGDFAE 368
>gi|429089133|ref|ZP_19151865.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
gi|426508936|emb|CCK16977.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
Length = 609
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVLAGCRTGE--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|257464903|ref|ZP_05629274.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
gi|257450563|gb|EEV24606.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
Length = 604
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 218/333 (65%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I+AVL+G D +M TGGGKS+CYQ+PAL G+ LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEIIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 75 QVDQLLTNGIEAGYINSTQTFEEQQLVEQKAISGQ--LKLLYLSPEKVMTQGFFHFI--- 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L LR+ P VP++ALTATA P + D++
Sbjct: 130 -SHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSAFPKVPMMALTATADPTTRHDIIH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ+P SF+RPN+ Y V+ K + A + K G + IVYC R +E
Sbjct: 189 HLRLQDPHTYLGSFDRPNIRYTVQEKFKPMEQLAKF--IAKQQGKS-GIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA G+S YHAG+ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVAHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAILFYDPAD 338
>gi|430808837|ref|ZP_19435952.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
gi|429498733|gb|EKZ97235.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
Length = 615
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 236/404 (58%), Gaps = 26/404 (6%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVL 82
+ +L+ FG+ FR +Q + I V G DC LMPTGGGKS+CYQIPAL A G+ +
Sbjct: 5 LAILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGI 64
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+ L+ST + + + DL +G+ L +LYV PE
Sbjct: 65 VVSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGR--LDILYVAPERLM 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTAT
Sbjct: 123 TPRFLDLLERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPRVPRIALTAT 178
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------N 256
A +++++E L L V SSF+RPN+ Y + K D+A L + +KA
Sbjct: 179 ADALTRQEIVERLALDEASVFISSFDRPNIRYRIIEK---DNARLQLLAFIKAEHMNATG 235
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G IVYCL R ++ +A+LS+ GI+ YHAG++ + R + + V+VAT+
Sbjct: 236 GHDSGIVYCLSRKKVEDTAAWLSSHGINALGYHAGMDSQVRQTHQARFREEEGIVMVATI 295
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + K
Sbjct: 296 AFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQQK 350
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWD 420
S++ +R S + + + AG R R+L Y+D
Sbjct: 351 RMIDESEADEAHKRVSSSKLDALLGLCETAGCRRVRILA--YFD 392
>gi|304414091|ref|ZP_07395459.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
gi|304283305|gb|EFL91701.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
Length = 629
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/384 (40%), Positives = 238/384 (61%), Gaps = 16/384 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++++ ++LR FG+ QFR Q + I A+LSG+DC +MPTGGGKS+CYQIPAL G
Sbjct: 12 INQEQFTTEILRDVFGYQQFRPGQKEIIAAILSGQDCLVIMPTGGGKSLCYQIPALVMKG 71
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ LVVSPLI+LM++QV L G+ L+S+QT Q ++++ + SGK ++LLY+ PE
Sbjct: 72 LTLVVSPLISLMKDQVDQLLAYGVTAACLNSSQTWQQQSEVIANCRSGK--IKLLYIAPE 129
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F+ +L L+A+DEAHCIS WGHDFRP YR L+ L+ P +P++AL
Sbjct: 130 RLVAENFLQQLSFFSP----ALLAVDEAHCISQWGHDFRPEYRALNQLKLRFPHLPVIAL 185
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG 257
TATA + D++ L L +PL+ +SF+RPN+ Y + ++K + LC ++ G
Sbjct: 186 TATADEVTRADIIRLLNLHHPLIQINSFDRPNIRYTLIEKFKPV-----EQLCRLVGKQG 240
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R + A L G+S AAYHAGL+ R+ V + + Q+VV+TVA
Sbjct: 241 AKSGIIYCNSRAKVESTVARLQNRGLSVAAYHAGLDSLVRAQVQEAFQRDDLQIVVSTVA 300
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ ++R V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L +
Sbjct: 301 FGMGINKPNIRFVIHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPSDMVWLRHCLEEK 360
Query: 378 QSKNSQSFSTRERSSKKSISDFSQ 401
Q+ ER ++ F++
Sbjct: 361 PVSEQQNI---ERHKLNAMGAFAE 381
>gi|429112524|ref|ZP_19174294.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
gi|426313681|emb|CCK00407.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
Length = 609
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 222/346 (64%), Gaps = 14/346 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFVA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|448097267|ref|XP_004198627.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359380049|emb|CCE82290.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1415
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 221/349 (63%), Gaps = 18/349 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PAL G +V+SPLI+LM++Q
Sbjct: 741 FRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRGTTIVISPLISLMQDQ 800
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKI 153
V L K I +SS + + E +G+ L+L+Y++PE+ T + ++ ++
Sbjct: 801 VQHLLHKNIRAGMISSKGSAAERKSTLEQFRNGE--LQLVYLSPEMVNTSQHIQRIIARL 858
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L V +DEAHC+SSWGHDFRP Y+ +S + P VP++ALTATA KV+ D++
Sbjct: 859 YESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPVIALTATANEKVRMDIVH 918
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLER 268
L + +P++LK SFNR NLFYE+++K D + D +L + I+YC +
Sbjct: 919 HLQMSDPVLLKQSFNRTNLFYEIKWKAANFLDWIRDY------ILTKQQNKTGIIYCHSK 972
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ + L+ G+ C+ YHAGL+ R + DW +R QV+ AT+AFGMGID+ DVR
Sbjct: 973 QSCEVTADRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICATIAFGMGIDKPDVR 1032
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
V H IP+S+E +YQE+GRAGRD LPS+ +++Y D R ++ ++ ++
Sbjct: 1033 FVIHLFIPRSLEGYYQETGRAGRDGLPSECIMFYSYKDARSLQNMIQRD 1081
>gi|46143327|ref|ZP_00135472.2| COG0514: Superfamily II DNA helicase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 604
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/333 (45%), Positives = 220/333 (66%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 18 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 77
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 78 QVDQLLTNGIEAGFLNSTQTFEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 132
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LR+ P+VP++ALTATA P + D+++
Sbjct: 133 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 191
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K G + IVYC R +E
Sbjct: 192 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFIS--KQQGKS-GIVYCNSRKKVEE 248
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L++ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 249 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 308
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 309 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 341
>gi|451846770|gb|EMD60079.1| hypothetical protein COCSADRAFT_100311 [Cochliobolus sativus
ND90Pr]
Length = 485
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 221/377 (58%), Gaps = 25/377 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F A FR Q + + A L G+D F T GKS+CYQ+PA+ GI +V+SPL+A
Sbjct: 16 LRKVFKKAAFRPPQREVVLATLEGQDVFVQAATSFGKSLCYQLPAVVDFGITIVISPLLA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQV L+ I E ++ST + + +I DL G P RLLYVTPE F
Sbjct: 76 LMNNQVASLRNANIRVETINSTTPTEDRKRILADLQCGHPLTRLLYVTPEFCQGDHFRKI 135
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ IHS+ L +A+DEAHC+S WGHDFRPS+++LS + PD+P++ LTATA +V+
Sbjct: 136 LRVIHSQRELARIAVDEAHCVSEWGHDFRPSFQQLSFFKTEFPDIPVICLTATATARVRD 195
Query: 210 DVMESLCL--QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------------ 255
D++ +L L + + S +RPNL YEVR+K +D Y D S+LK
Sbjct: 196 DIINTLALDPKKLATFRMSSSRPNLHYEVRFKSDEEDHYDDFLSLLKGIYARRAERPERV 255
Query: 256 ---------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ I+Y L R C+ L+ L + GI YHAGL+ R+ L WI+
Sbjct: 256 TQLASQNQRTDNVPGIIYTLFRKDCESLAERLRSDGIGAKPYHAGLSVSERADALSSWIA 315
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
++ ++VAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD S +LYYG
Sbjct: 316 NKPGYDIIVATTAFGMGIDKENVRFVVHWQIPKSFEGFYQEAGRAGRDGKASLCILYYGR 375
Query: 365 DDRRRMEFILSKNQSKN 381
+DR R +++++ ++
Sbjct: 376 EDRDRAANMMARDTARQ 392
>gi|367001388|ref|XP_003685429.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
gi|357523727|emb|CCE62995.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
Length = 1280
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 229/361 (63%), Gaps = 10/361 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
L+ F FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 538 LKNSFNLNSFRPNQLEAINSTLNGRDVFVLMPTGGGKSLCYQLPAIVKSGKTSGTTIVIS 597
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM +QV L I +SS + K + +G L L+Y++PE+ +A+
Sbjct: 598 PLISLMHDQVEHLLNINIKASMISSKSPAAQRKKTFNLFING--LLDLVYISPEMMSASQ 655
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+K+++ L + +DEAHC+S+WGHDFRP Y++L + P +P++ALTATA
Sbjct: 656 QCKRAIKRLYETNKLARIVVDEAHCVSNWGHDFRPDYKELKLFKREYPTIPLIALTATAN 715
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+VQ D++ +L ++NPL+LK SFNR NL Y +R K + ++CS LK + + I+
Sbjct: 716 EQVQLDIINNLGVRNPLLLKQSFNRTNLDYIIRTKS--KNTVNEICSSLKTDFKNQSGII 773
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++++ +++ I A YHAG+ R + W +++ QV+ ATVAFGMGID
Sbjct: 774 YCNSKISCEQVAQQIASQKIRTAFYHAGMTPSERLKIQKAWQNNQVQVICATVAFGMGID 833
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V HF IP+++E +YQE+GRAGRD LP++ + Y+ D R ++ ++ +++S N +
Sbjct: 834 KPDVRFVIHFTIPRTLEGYYQETGRAGRDGLPAQCITYFSFKDVRSLQTMIQRDKSLNKE 893
Query: 384 S 384
+
Sbjct: 894 N 894
>gi|327312566|ref|YP_004328003.1| ATP-dependent DNA helicase RecQ [Prevotella denticola F0289]
gi|326944958|gb|AEA20843.1| ATP-dependent DNA helicase RecQ [Prevotella denticola F0289]
Length = 727
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/345 (44%), Positives = 216/345 (62%), Gaps = 9/345 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVSPLIA
Sbjct: 11 LKHYFGFDKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEVDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTATA K
Sbjct: 129 IAFLRSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGLCIVFYSKKDLNKLE 349
>gi|300714809|ref|YP_003739612.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
gi|299060645|emb|CAX57752.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
Length = 608
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 220/341 (64%), Gaps = 10/341 (2%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL ++L+ FG+ FR Q IQA L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 8 QEALAEQVLQETFGYQHFRPGQQSIIQASLNGRDCLVVMPTGGGKSLCYQIPALVREGLT 67
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G++ L+STQT + + ++ +GK +RLLY+ PE
Sbjct: 68 LVVSPLISLMKDQVDQLLANGVSAACLNSTQTREEQQEVMAGCRTGK--VRLLYIAPERL 125
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 126 MMDNFLDNLLHWNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ L L +PL+ SSF+RPN+ Y + K L ++ C
Sbjct: 182 TADETTRNDIARLLQLDDPLIQISSFDRPNIRYTLVEK---FKPTEQLLRYVQDQRGKCG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMG
Sbjct: 239 IIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++L+ Y
Sbjct: 299 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALMLY 339
>gi|344202287|ref|YP_004787430.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
gi|343954209|gb|AEM70008.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
Length = 695
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 229/357 (64%), Gaps = 11/357 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++LL+ HFG F Q + ++L G D +MPTGGGKS+C+Q+PAL G +VVSP
Sbjct: 9 LQLLKKHFGFDTFLPNQQAIVNSILEGNDLLGIMPTGGGKSVCFQLPALLLHGTAIVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+ GI F +S+Q + +++I + L + + ++LLYV PE + P
Sbjct: 69 LIALMKDQVDALQANGIPATFYNSSQAAEAQSEILKKLRAQE--IKLLYVAPE--SLPHL 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M L + + ++L A+DEAHCIS+WGHDFRP+Y +L L+ P+VPI A TATA
Sbjct: 125 MPFLTEDN----VSLFAVDEAHCISAWGHDFRPAYTQLGKLKEVFPNVPIAAFTATADSA 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D+++ L + N +SF+R NLF EVR + + + L+ D I+YCL
Sbjct: 181 TQDDILKQLNITNAERHIASFDRKNLFLEVRPGT---NRFTQIVRFLEQRTDQSGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++L+ L+ G AYHAG++ +AR+ V +D+++ R ++VAT+AFGMGID+ +
Sbjct: 238 SRKGTEKLAEKLNNNGFKAQAYHAGMDTEARNQVQEDFVNDRTPIIVATIAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
VR V H+N+PK++E++YQE GR+GRD+LP+ +LL+Y D ++ + ++++K Q
Sbjct: 298 VRWVIHYNMPKNIESYYQEIGRSGRDRLPANTLLFYSFSDVIQLRKFIEESETKEVQ 354
>gi|224070434|ref|XP_002303149.1| predicted protein [Populus trichocarpa]
gi|222840581|gb|EEE78128.1| predicted protein [Populus trichocarpa]
Length = 1194
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 179/465 (38%), Positives = 257/465 (55%), Gaps = 31/465 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 454 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQD 513
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I +LS+ + +I +L S RLLYVTPE A + L+
Sbjct: 514 QIMHLLQANIPAAYLSANMEWTEQQEILRELCSDYCKYRLLYVTPEKVAKSDVLLRNLES 573
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ RGLL + IDEAHC+S WGHDFRP Y++L L+ P+LALTATA V++DV+
Sbjct: 574 LNGRGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVV 633
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L + +V + SFNRPNL+Y V + K L+D + +K N D C I+YCL R
Sbjct: 634 QALGLVDCIVFRQSFNRPNLWYSVIPKTKKCLED----IDKFIKENHFDECGIIYCLSRM 689
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ RS V W ++ ATVAFGMGI++ DVR
Sbjct: 690 DCEKVAEKLQECGHKTAFYHGNMDAAQRSFVQKQWSKDEINIICATVAFGMGINKPDVRF 749
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ ++ + Q++ S +
Sbjct: 750 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIIQGQAEQSPWTAGCG 809
Query: 390 RSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVS 449
R++ KS SD ++L+ + R++ DV L H ++
Sbjct: 810 RNNMKS-SD--RILEKNTENLLRMVSYSENDV----------DCRRLLQLLHFGEKFDAG 856
Query: 450 LCKNSCDACKHPNLL--------AKYLGELTSAVLQKNHFSQIFI 486
C N+CD C L AK L EL L HFS I
Sbjct: 857 NCGNTCDNCSKIKTLVERDVTESAKQLVELVK--LTGQHFSSSHI 899
>gi|288937759|ref|YP_003441818.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
gi|288892468|gb|ADC60786.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
Length = 608
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPKIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|294495880|ref|YP_003542373.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
gi|292666879|gb|ADE36728.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
Length = 599
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 227/354 (64%), Gaps = 9/354 (2%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92
+FG+ FR Q + IQ VL+ +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI+LM+
Sbjct: 8 YFGYDTFRPLQENIIQDVLNKKDVFVLMPTGGGKSLCYQLPSLLMEGVTVVVSPLISLMK 67
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
+QV L GIA +++ST + + + L GK L LLYV PE A P + L K
Sbjct: 68 DQVDRLLSHGIAAAYMNSTLDNSEMSHVKDSLIRGK--LDLLYVAPERLAMPSTLKLLAK 125
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ +NL A+DEAHCIS WGHDFRP YRKL +LR+ P+VP++ALTATA P V +D+
Sbjct: 126 VN----VNLFAVDEAHCISQWGHDFRPEYRKLGALRSGFPNVPLIALTATATPAVARDIT 181
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
+ L + +SFNR NL+YEV+ + +A + S L+++ ++C I+YC R + +
Sbjct: 182 KQLNMVRSEKYVASFNRSNLYYEVKSGE---NADQQITSYLRSHPESCGIIYCQTRKSVE 238
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
L+ L G++ A YHAG++D+ R + ++ +VVVATVAFGMGID+ +VR V H
Sbjct: 239 GLAGRLKKLGVNAAFYHAGMSDELRHRAQEKFLDGTIRVVVATVAFGMGIDKSNVRFVMH 298
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
+++P +E++YQ++GR GRD P +L++ D + ++ + + SK + +
Sbjct: 299 YDLPADLESYYQQTGRGGRDGQPCDCILFFKRGDWYKQQYFIEQMSSKKEREIA 352
>gi|163751804|ref|ZP_02159020.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161328289|gb|EDP99450.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 610
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 230/365 (63%), Gaps = 10/365 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + + L L+ FG+ FR Q + I+ + +G DC +MPTGGGKS+CYQ+PAL P
Sbjct: 8 PQPQSDPLSSSLQSVFGYRTFRKGQREVIEQICAGIDCLVIMPTGGGKSLCYQLPALQMP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L++ G+ +L+S+Q + + +I ++ SG+ L+LLYV+P
Sbjct: 68 GLTIVVSPLISLMKDQVDSLQQMGVNAGYLNSSQAGEERARILREMHSGE--LKLLYVSP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ +L ++H ++L AIDEAHCIS WGHDFRP Y L LR Y P VPI+A
Sbjct: 126 ERLLQASFIERLHELH----ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA ++D+ + L + P +SF+RPN+ Y V K +A L + A
Sbjct: 182 LTATADQATRQDICQRLTI-TPFSFLTSFDRPNIRYTVAEKL---NAANQLRQFVTAQNG 237
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R DE++ L G + AYHAG + R+ V D ++ + +VVATVAF
Sbjct: 238 SSGIIYCGSRRRVDEVAERLRLQGHNADAYHAGRTQEERTDVQDRFLKDQLDIVVATVAF 297
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V H++IPKS+E++YQE+GRAGRD L +++L+ + D R+ ++ +++
Sbjct: 298 GMGINKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDAEALMLFDPADIGRVRHLIEQSE 357
Query: 379 SKNSQ 383
Q
Sbjct: 358 PGPQQ 362
>gi|94312259|ref|YP_585469.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
gi|93356111|gb|ABF10200.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
Length = 630
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 236/404 (58%), Gaps = 26/404 (6%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVL 82
+ +L+ FG+ FR +Q + I V G DC LMPTGGGKS+CYQIPAL A G+ +
Sbjct: 20 LAILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGI 79
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+ L+ST + + + DL +G+ L +LYV PE
Sbjct: 80 VVSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGR--LDILYVAPERLM 137
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTAT
Sbjct: 138 TPRFLDLLERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPRVPRIALTAT 193
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------N 256
A +++++E L L V SSF+RPN+ Y + K D+A L + +KA
Sbjct: 194 ADALTRQEIVERLALDEASVFISSFDRPNIRYRIIEK---DNARQQLLAFIKAEHMNATG 250
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G IVYCL R ++ +A+LS+ GI+ YHAG++ + R + + V+VAT+
Sbjct: 251 GHDSGIVYCLSRKKVEDTAAWLSSHGINALGYHAGMDSQIRQTHQARFREEEGIVMVATI 310
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + K
Sbjct: 311 AFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQQK 365
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWD 420
S++ +R S + + + AG R R+L Y+D
Sbjct: 366 RMIDESEADEAHKRVSSSKLDALLGLCETAGCRRVRILA--YFD 407
>gi|410632491|ref|ZP_11343149.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
gi|410147917|dbj|GAC20016.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
Length = 594
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 222/366 (60%), Gaps = 15/366 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FRD Q I VL +D LMPTGGGKS+CYQIPA+ PG+ +VVSPLI
Sbjct: 7 ILKQTFGYDHFRDGQAQVISQVLQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L G+ +++S + Q +Y+ + GK +L+YV PE F+
Sbjct: 67 SLMKDQVDALLTYGVNAAYINSNLSPQEMFNVYKSMQDGK--YKLIYVAPERLMQLEFIH 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L+ + ++L+A+DEAHC+S WGHDFR YR L L+ P++PI+ LTATA +
Sbjct: 125 RLQGL----TVSLIAVDEAHCVSHWGHDFRKDYRLLGQLKATFPNIPIMGLTATADLATR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ + L LQ P + K SF+RPN +RY + D + I+YC R
Sbjct: 181 ADITQQLNLQQPFIFKGSFDRPN----IRYNQVTKYKATDQAIAFVKQQEGSGIIYCNSR 236
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+LS L+ G++CA YHAGL + R + D+I + ++VATVAFGMGID+ +VR
Sbjct: 237 RKVDDLSIALAKHGVNCAGYHAGLEGEIRDKIQRDFIQDKIDIIVATVAFGMGIDKSNVR 296
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS--KNQSKNS---Q 383
V HF++P+S+E++YQE GRAGRD +P+++LL + D R+ +S +N +N+ Q
Sbjct: 297 FVVHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWISTGENPQRNNVELQ 356
Query: 384 SFSTRE 389
F+ E
Sbjct: 357 KFAAME 362
>gi|326803569|ref|YP_004321387.1| ATP-dependent DNA helicase RecQ [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650946|gb|AEA01129.1| ATP-dependent DNA helicase RecQ [Aerococcus urinae
ACS-120-V-Col10a]
Length = 596
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L +FG+ FR Q + I+++L+GRD ++PTGGGKS+CYQ+PAL PGI LV+SPLI+
Sbjct: 7 LEKYFGYKTFRPGQKELIESILAGRDSLGILPTGGGKSICYQLPALILPGITLVISPLIS 66
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E GI +L+S+Q+ + + + + SG+ ++L+YV+PE + F+
Sbjct: 67 LMKDQVDSLNEHGIHSVYLNSSQSSEDYFAVLDRIHSGQ--VKLIYVSPERLKSESFLQL 124
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPKVQ 208
+ L+ +AIDEAHC+S WGHDFR SYR++++ + L P++ A TATA +VQ
Sbjct: 125 ANDLP----LDQIAIDEAHCVSQWGHDFRASYREIANFIDQLSHRPVVSAFTATATNRVQ 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L L+NP VL +SF+RPNL +EV + DL + + AI+Y R
Sbjct: 181 QDIIHQLALENPYVLINSFDRPNLTFEVMEPESKKKTVIDLI-----DKEEAAIIYASSR 235
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
T D LS +L G+ +AYHAG++ R + +D+I R ++VAT AFGMGID+ DVR
Sbjct: 236 KTVDRLSEWLRDQGLPVSAYHAGMSPADRMASQNDFIYERTNIIVATNAFGMGIDKPDVR 295
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
V H+N+P ++E++YQE+GRAGRD LP++++L Y D +F++S++ S+
Sbjct: 296 QVIHYNLPTNLESYYQEAGRAGRDGLPARAILLYSPKDILTAKFLISQSNDPTSE 350
>gi|405951075|gb|EKC19019.1| ATP-dependent DNA helicase Q5 [Crassostrea gigas]
Length = 1138
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 248/419 (59%), Gaps = 26/419 (6%)
Query: 24 EALVKLLRWHFGHAQFR-DKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIV 81
E + ++L+ F H F+ D Q A++ V+ G+ D F MPTG GKS+CYQ+PA+A PGI
Sbjct: 3 EKMYEVLKKIFKHDDFKSDLQKRAVKCVVEGKNDVFISMPTGAGKSLCYQLPAVASPGIT 62
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLIALM++Q+ L+ I E ++S T + + K+ EDL+ KP +LLY+TPE
Sbjct: 63 VVVSPLIALMQDQLEHLEILKIPAETINSKMTTKQRAKVVEDLNRAKPKTKLLYITPEQA 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ G + ++ + R +L +DEAHC+S WGHDFRP Y KL S R +P+VP +ALTA
Sbjct: 123 ASEGCRTLIEGLVKRQMLTYFVVDEAHCVSQWGHDFRPDYLKLGSFRKIMPNVPCVALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT 259
TA + +D+++ L L+N L K+S R N++Y++ KD++ D Y DL L + G
Sbjct: 183 TATAQTVEDIVQQLKLKNQLTKFKTSCFRSNIYYDIVMKDVVHDPYEDLMKFGLTSLGRE 242
Query: 260 -----------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
C IVYC R C E++++L+ GI YHAGL R +V
Sbjct: 243 MFTKEDNSLIENWSEFGCGIVYCRTRDACAEVASHLTRKGILTKPYHAGLKADVRETVQS 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
DW+ R V+ AT++FGMG+D+ +VR V H+ IPKSM +YQESGRAGRD S LYY
Sbjct: 303 DWMEGRFPVIAATISFGMGVDKPNVRFVAHWTIPKSMSGYYQESGRAGRDGAQSFCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDV 421
+ + F+++K SK +++ ++ K + S F ++ ++ L R+W +
Sbjct: 363 SKREMDTVAFLINKENSKFTKNTEAQKIRKKAAESGFDAIV-----KYCENLSCRHWSI 416
>gi|148266306|ref|YP_001233012.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
gi|146399806|gb|ABQ28439.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
Length = 715
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 215/334 (64%), Gaps = 10/334 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + ++ ++ G D F +MPTGGGKS+CYQIPAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGYNTFRQPQQEIVEGLIRGDDAFVIMPTGGGKSLCYQIPALHRPGVGIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ F +S+ ++ +L + +L L+YV PE + F+ +LK++
Sbjct: 73 QVDALRANGVRAAFYNSSLGEVEARRVLAELHN--QALDLIYVAPERLMSEPFLERLKEM 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA + + D++E
Sbjct: 131 E----IALFAIDEAHCVSQWGHDFRPEYVQLGRLRRLFPQVPMIALTATADAQTRGDIIE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCD 272
L LQ + F+RPN+ Y V K + L + L G D IVY L R +
Sbjct: 187 RLGLQGAACHVAGFDRPNIRYTVMEKQ---KPFVQLTTFLAGRGRDEAGIVYALSRKRVE 243
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E++ LSA GI+ A YHAGL D+ RS V + + QVVVATVAFGMGID+ +VR V H
Sbjct: 244 EVAERLSAAGIAAAPYHAGLPDRERSRVQEAFQRDELQVVVATVAFGMGIDKPNVRFVVH 303
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+++PK++E++YQE+GR+GRD LP+++LL +G D
Sbjct: 304 YDLPKNIESYYQETGRSGRDGLPAEALLLFGYGD 337
>gi|429855219|gb|ELA30187.1| RecQ family ATP-dependent DNA helicase [Colletotrichum
gloeosporioides Nara gc5]
Length = 1695
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/348 (46%), Positives = 210/348 (60%), Gaps = 11/348 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
+ L+ F FR QL+AI A L+G+D F LMPTGGGKS+CYQ+PA+ G I +V
Sbjct: 792 RALKDRFRMRGFRPNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIINSGKTRGITIV 851
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL--RLLYVTPE-L 140
VSPL++LM++QV + I L+ T Q + +I+ P L +LLYVTPE L
Sbjct: 852 VSPLLSLMQDQVDHMSALNIQAVSLNGETTSQKRNQIFSSFKERSPELFVQLLYVTPEML 911
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+P FM L +HS L + IDEAHC+S WGHDFRP Y+ L LRN+ P VPI+ALT
Sbjct: 912 NNSPSFMKALTTLHSGKRLARIVIDEAHCVSQWGHDFRPDYKALGKLRNHFPTVPIIALT 971
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKANGDT 259
ATA V D+ +L + N V SFNRPNL YEVR K+ L ADL +
Sbjct: 972 ATATQNVIVDIKHNLGMDNCEVFCQSFNRPNLTYEVRRKERELVHKIADL--IQSKYDQQ 1029
Query: 260 CAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C I+Y L R T ++++ L GI YHA ++ + R V W R VVVAT+AF
Sbjct: 1030 CGIIYTLSRKTSEQVAEKLRDKYGILAHHYHAQMSPEDRIDVQRQWQKDRIHVVVATIAF 1089
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
GMGID+ DVR V H ++PKS+E +YQE+GRAGRD PS +LY+G D
Sbjct: 1090 GMGIDKPDVRFVIHHSVPKSLEGYYQETGRAGRDGNPSDCILYFGYQD 1137
>gi|85858064|ref|YP_460266.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
gi|85721155|gb|ABC76098.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
Length = 619
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 148/333 (44%), Positives = 212/333 (63%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + + ++ G D F LMPTGGGKS+CYQ+PAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGYDAFRLHQQEIVDGLIRGEDAFVLMPTGGGKSLCYQLPALHRPGVGIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ F +S+ + K+ L GK L L+Y+ PE + F+ +L I
Sbjct: 73 QVDSLKAYGVKAAFYNSSLSGTEARKVLARLHGGK--LDLIYIAPERLMSREFLERLNDI 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHCIS WGHDFRP YR+L LR P++P++ALTATA ++D++E
Sbjct: 131 P----IALFAIDEAHCISQWGHDFRPEYRQLGRLRGLFPEIPLIALTATAEAHTRRDILE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L+ S F+RPN+ Y V K +A L + L+ IVYCL R ++
Sbjct: 187 RLGLRQARSYISGFDRPNIRYTVLEKR---KPFAQLTTFLQPRYKGTGIVYCLSRQRVEK 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G A YHAGL AR V +D++ +++VATVAFGMGID+ ++R V H+
Sbjct: 244 VAGALTEAGFQAAPYHAGLPAGARKQVQEDFLRDDIRIIVATVAFGMGIDKSNIRWVVHY 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+IPK++E++YQE+GRAGRD LP+++LL +G D
Sbjct: 304 DIPKNIESYYQETGRAGRDGLPAEALLLFGYGD 336
>gi|198429056|ref|XP_002130932.1| PREDICTED: similar to MGC131022 protein [Ciona intestinalis]
Length = 652
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 215/341 (63%), Gaps = 3/341 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ F FR KQL+AI A LSGRD +M TGGGKS+ YQ+PAL GI +V+SPL+
Sbjct: 77 ILKSTFRMDDFRSKQLEAINATLSGRDVILIMSTGGGKSLTYQLPALVGKGITVVISPLV 136
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFM 147
+LME+Q+I L GI + L++ T +++ + S PS RLLYVTPE ++ + FM
Sbjct: 137 SLMEDQIISLNRFGIEAKLLNAASTKDEVKHVHQSMTSQSPSFRLLYVTPEKISKSKRFM 196
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
++L+K + LN +AIDE HC S WG+DFRP Y+ L L+ P PI+ LTAT+ KV
Sbjct: 197 AQLEKCYKSVNLNRIAIDEVHCASQWGNDFRPDYKILGILKRQFPKSPIIGLTATSTDKV 256
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
+D + L + LV K++ +R NLFY+VR K + DD D+ ++ +N + I+YC
Sbjct: 257 TEDTKKMLNIPFALVFKTALDRRNLFYQVREKPNTNDDVIKDIVQLINSNFKNQPGIIYC 316
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R C E+++ L+ GI + YHA L ++ V W + QV+ AT+AFGMGID+
Sbjct: 317 FSRKNCAEVASSLNKRGIKSSEYHAQLTPDDKTKVHHMWSDNNIQVICATIAFGMGIDKP 376
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H ++ KS+E +YQESGRAGRD P+ LLY+G D
Sbjct: 377 NVRFVIHHSMSKSVENYYQESGRAGRDGSPALCLLYFGFTD 417
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 231/367 (62%), Gaps = 16/367 (4%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTADFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L+ G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQ 383
++ Q
Sbjct: 354 SEPGPQQ 360
>gi|284006614|emb|CBA71875.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
Length = 608
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 233/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I +L+ +DC +MPTGGGKS+CYQIPAL PG+ +VVSPL
Sbjct: 15 QVLQQIFGYQQFRPGQEQIINTILTKQDCLVVMPTGGGKSLCYQIPALILPGLTIVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +L+S+QT Q + ++ E GK ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLSQYGIEASYLNSSQTGQQQKQVIEYCRQGK--IKLLYIAPERLVMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L K++ L+A+DEAHCIS WGHDFRP YR L LR +P++ALTATA
Sbjct: 133 DRLPKLNP----VLLAVDEAHCISQWGHDFRPEYRALGQLRRRFSQLPVIALTATADQTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PLV SSF+RPN+ Y + +YK L L +K IVYC
Sbjct: 189 RNDIIHGLELCEPLVHISSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGNSGIVYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E + L G+S AAYHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSKAEETAERLHKRGLSAAAYHAGLDNTQRAKVQDAFQKDDLQVVVATVAFGMGINKS 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+I +++E++YQE+GRAGRD L ++++L+Y D + L++ + Q
Sbjct: 304 NVRFVVHFDIARNIESYYQETGRAGRDGLAAEAILFYDPADLSWLRRCLAEKPAGQLQEI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++S F++
Sbjct: 364 ---ERHKLNAMSAFAE 376
>gi|343085469|ref|YP_004774764.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342354003|gb|AEL26533.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 725
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 215/343 (62%), Gaps = 8/343 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG QFR Q + +L G + F +MPTG GKS+CYQ+PA++ G +V+SPLIA
Sbjct: 9 LKKIFGFNQFRGNQQLIVDNILKGNNTFVIMPTGAGKSLCYQLPAVSNKGTAIVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI FL+ST + ++ ++ +G +LLYV PE +
Sbjct: 69 LMKNQVDQLNSFGINAHFLNSTLSKTESNRVKGEVSAGLT--KLLYVAPESLTKEENVKF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQ 208
LK ++ VAIDEAHCIS WGHDFRP YRK+ S+ + D +P++ALTATA PKVQ
Sbjct: 127 LKSAD----ISFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDNLPVIALTATATPKVQ 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ +L ++ + KSSFNR NL+YEVR K + + ++ +K+ I+YCL R
Sbjct: 183 QDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-VKSETKKEIIKYIKSQKGKSGIIYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
E++ L GI+ A YHAGL+ R DD+++ V+VAT+AFGMGID+ DVR
Sbjct: 242 KKVTEIAELLKVNGINAAPYHAGLDGHVRVKNQDDFLNEEVDVIVATIAFGMGIDKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V H+++PKS+E +YQE+GR+GRD L L++Y +D ++E
Sbjct: 302 YVIHYDVPKSLEGYYQETGRSGRDGLEGHCLMFYRYEDIIKLE 344
>gi|417955149|ref|ZP_12598172.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342813701|gb|EGU48661.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 612
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 227/363 (62%), Gaps = 12/363 (3%)
Query: 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70
TS +P+ E +L FG+ FRD Q + I++ ++G+D +MPTGGGKS+CY
Sbjct: 2 TSTLLAPQPMEELPTPQSILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCY 61
Query: 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130
QIPAL + G+ LV+SPLI+LM++QV LK G+A E ++ST + + +Y + SG +
Sbjct: 62 QIPALVRSGLTLVISPLISLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSG--A 119
Query: 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
L+L+YV+PE F+ +L+ + L+++A+DEAHCIS WGHDFRP Y L L+ Y
Sbjct: 120 LKLVYVSPERVLMRDFIERLESLP----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQY 175
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P VP++ALTATA +KD+M+ L L P SF+RPN+ Y + K + +
Sbjct: 176 FPHVPVMALTATADDATRKDIMQRLQLNEPHTYLGSFDRPNIRYTLVEK---HKPVSQVV 232
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
L+ +C I+YC R + ++ L G+ A+YHAGL R+ V + + Q
Sbjct: 233 RFLENQRGSCGIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQ 292
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---R 367
+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y D
Sbjct: 293 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWL 352
Query: 368 RRM 370
RRM
Sbjct: 353 RRM 355
>gi|326800755|ref|YP_004318574.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
gi|326551519|gb|ADZ79904.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
Length = 729
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 239/406 (58%), Gaps = 17/406 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ L L+ FG F+ Q I +L +D F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 EKTLFDNLQNFFGFDTFKGDQEAIITNILQKKDTFVIMPTGGGKSICYQLPALMSEGTAV 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G A FL+S+ T++ +D+ GK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGADSIAHFLNSSLNKSEITRVKQDVLDGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
A + LK I ++ VA+DEAHCIS WGHDFRP YRK+ + N + ++PI+A
Sbjct: 122 SLAKTDNIEFLKLI----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + + KSSFNRPNL+YEVR K + ++ +K N
Sbjct: 178 LTATATPKVQSDIRKNLQMNDATLFKSSFNRPNLYYEVRPKK---NVVKEIVKFIKNNPS 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GIS YHAGL+ K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEIAEVLNINGISALPYHAGLDAKTRAETQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSKN 377
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +F+ K
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYSEKDIEKLTKFMKDKP 354
Query: 378 QSK---NSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWD 420
S+ +Q S+ S+ Q+L G+ F+ N D
Sbjct: 355 VSEREIGTQILKEVIDYSESSVCRRKQILHYFGENFNEAGCNNMCD 400
>gi|354594252|ref|ZP_09012293.1| ATP-dependent DNA helicase RecQ [Commensalibacter intestini A911]
gi|353672427|gb|EHD14125.1| ATP-dependent DNA helicase RecQ [Commensalibacter intestini A911]
Length = 610
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 237/388 (61%), Gaps = 11/388 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q AI V+ G+D LMPTGGGKS+CYQIP+L +PG+ LV+SPLI
Sbjct: 22 VLKHVFGYEDFRGLQQQAIDFVMQGQDVLLLMPTGGGKSICYQIPSLCRPGMGLVISPLI 81
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L++ GI L S Q I +D+ +G SL LLY++PE + +
Sbjct: 82 ALMDDQVAALRQVGINAGALHSELEPQEAASIRQDMMNG--SLDLLYISPERLLSDDMLR 139
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LK+I L+L+AIDEAHC+S WGH+FRP YR +++L + P+VP +ALTATA P +
Sbjct: 140 FLKRIP----LSLIAIDEAHCVSVWGHEFRPEYRLMTNLSSMFPNVPRIALTATADPTTR 195
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ SL + N VL++SF+R NLF KD L +L+ + D I+YC R
Sbjct: 196 QDIVASLGMPNAHVLQASFHRTNLFIRALPKD---GETKQLLMILQKHKDAACIIYCGSR 252
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++A L+ G + AYHAGL+ + +VL + S ++VATVAFGMGIDR DVR
Sbjct: 253 NKAERVAAMLTGRGFTGLAYHAGLSALEKRAVLLRFRSGEPLIIVATVAFGMGIDRPDVR 312
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
LV H ++PK E +YQ+ GRAGRD P++++L YG +D + + L ++ S Q R
Sbjct: 313 LVVHLDMPKGPEHYYQQIGRAGRDGDPAETVLLYGGEDIVKARYWLEQSNSDEEQKKIAR 372
Query: 389 ERSSKKSISDFSQVLDVAGKRFSRVLGN 416
R + ++ F++ D + R G
Sbjct: 373 SRLN--TMIAFAETADCRTQILLRCFGE 398
>gi|78187521|ref|YP_375564.1| ATP-requiring DNA helicase RecQ [Chlorobium luteolum DSM 273]
gi|78167423|gb|ABB24521.1| ATP-dependent DNA helicase RecQ [Chlorobium luteolum DSM 273]
Length = 615
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 218/351 (62%), Gaps = 9/351 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA+ + L+ FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+PA+ PG +V
Sbjct: 8 EAVHEALQRVFGFQAFRPNQREVVRAILEGRDVFAVMPTGGGKSLCYQLPAVLLPGTCIV 67
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV G + GI FL+S+Q + + + L SG+ L LLYV PE A
Sbjct: 68 VSPLIALMKDQVDGARANGIRAAFLNSSQLPEERQMVANALQSGE--LELLYVAPERFAV 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F + L+ I +++ IDEAHCIS WGHDFRP Y LS+L + P+ A TATA
Sbjct: 126 DSFRAMLRGIR----ISMAVIDEAHCISEWGHDFRPDYLSLSALVDLAGMAPVAAFTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+VQ D + L L++P ++++SF+RPNL YEV +KD D + S+L+ I+
Sbjct: 182 TERVQADTLLRLALRDPFLVRASFDRPNLSYEVLFKDSADR---QILSILRRFSGKAGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y R + ++ +A L A G YHAGL+D+ R + +I V++ATVAFGMGID
Sbjct: 239 YRASRKSVNDTAAMLRAKGFRALPYHAGLDDREREQNQNAFIRDEVDVIIATVAFGMGID 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
+ ++R V H ++PKS+E +YQE+GRAGRD P+ L Y D ++ F +
Sbjct: 299 KSNIRFVIHADLPKSIENYYQETGRAGRDGEPAHCTLLYSQGDIAKVRFFI 349
>gi|417610582|ref|ZP_12261072.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
gi|345353354|gb|EGW85588.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
Length = 603
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 221/338 (65%), Gaps = 15/338 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 9 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 68
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 69 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 126
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 127 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 182
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA---IVY 264
++D++ L L +PL+ +SF+RPN+ Y +L + + L +++ + C I+Y
Sbjct: 183 RQDIVRLLGLNDPLIQINSFDRPNIRY------MLMEKFKPLDQLMRYVQEQCGKSGIIY 236
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 237 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 296
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 334
>gi|168052509|ref|XP_001778692.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669907|gb|EDQ56485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/428 (39%), Positives = 249/428 (58%), Gaps = 21/428 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SGRD F LMPTGGGKS+ YQ+PA+ G+ LVVSPL++L+ +
Sbjct: 10 FGNKSFRLNQREIINATMSGRDVFVLMPTGGGKSLTYQLPAICSAGVTLVVSPLVSLIMD 69
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKK 152
Q++ L E I +LS T Q + +I +LD+G +LLYVTPE A +S+ L
Sbjct: 70 QIMHLSEANIPAAYLSGTMEWQEQNEILRNLDAG--VYKLLYVTPEKIARSDRLSQHLTS 127
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ + LL + +DEAHC+S WGHDFRP Y+ L + PDVP++ALTATA V++DV+
Sbjct: 128 LYDQRLLARIVVDEAHCVSQWGHDFRPDYQNLGVFKERFPDVPLIALTATATLSVKEDVV 187
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT 270
+L L ++ + +FNRPNL YEV + K L+D + + + + I+YCL R+
Sbjct: 188 RALKLTRCIIFRQTFNRPNLRYEVLPKSKKCLEDIDK---FIRERHPNESGIIYCLSRSD 244
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
C++++ L G A YH ++ RS V W ++ ATVAFGMGI++ DVR V
Sbjct: 245 CEKVTEKLREFGHKVAFYHGQMDPDERSYVQRMWSKDEVNIICATVAFGMGINKPDVRFV 304
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H ++PKS+E ++QESGRAGRD LP+ +LYY D R++ +L++ ++ + S+
Sbjct: 305 IHHSLPKSLEGYHQESGRAGRDNLPASCILYYTYADSIRLKHMLTQGAAELGSTGSSFRN 364
Query: 391 SSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSL 450
+ + + S LD +R++G D I SL L ++ VS
Sbjct: 365 HNTVTSNQLSTNLD----NLNRMIGYCQND------IDCRRSLQLAHFG---EMDFDVSS 411
Query: 451 CKNSCDAC 458
CK +CD C
Sbjct: 412 CKGTCDNC 419
>gi|336434030|ref|ZP_08613835.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336014617|gb|EGN44457.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 753
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/354 (42%), Positives = 219/354 (61%), Gaps = 10/354 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ +FG+ FR Q + I +L+GRD +MPTG GKS+CYQ+PAL GI +V+SP
Sbjct: 6 LQILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM +QV L E GI +++S+ T K E +G+ +++YV PE TP F
Sbjct: 66 LISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGR--YKIVYVAPERLETPRF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAP 205
+ +++V IDEAHCIS WG DFRPSY ++ S LP PI+ A TATA
Sbjct: 124 LD----FACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATK 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ D+ E L LQNP V + F+R NL++EV+ + + L+ + D I+YC
Sbjct: 180 RVQTDIREVLKLQNPYVAVTGFDRENLYFEVQ---RTKEKKERIREYLEKHSDESGIIYC 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL +L + G S YHAG+ ++AR S +D+I R QV++AT AFGMGID+
Sbjct: 237 ATRKNVDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+VR V H+N+P+S+E +YQE+GRAGRD PS+ ++YY D +F+L ++
Sbjct: 297 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLLESKEN 350
>gi|329113513|ref|ZP_08242294.1| ATP-dependent DNA helicase RecQ [Acetobacter pomorum DM001]
gi|326697338|gb|EGE48998.1| ATP-dependent DNA helicase RecQ [Acetobacter pomorum DM001]
Length = 641
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/363 (44%), Positives = 227/363 (62%), Gaps = 9/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 45 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 104
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 105 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 162
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 163 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 218
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 219 REDILTALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 275
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G AYHAGL+ + + L + S V+VATVAFGMGIDR DV
Sbjct: 276 RARTERMAASLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATVAFGMGIDRPDV 335
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 336 RAVVHLDMPSSPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 395
Query: 388 RER 390
R R
Sbjct: 396 RSR 398
>gi|390448336|ref|ZP_10233957.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
gi|389666305|gb|EIM77757.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
Length = 600
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 232/376 (61%), Gaps = 14/376 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +G+ FR +Q + + V++G + F LMPTGGGKS+CYQIPAL +PG+ L++SPLI
Sbjct: 8 ILKTVYGYEAFRGRQAEIVDHVIAGNNAFVLMPTGGGKSLCYQIPALCRPGLGLIISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV LK+ G+ L+S + I+ + +G SL +LYV+PE P +
Sbjct: 68 ALMADQVAALKQAGVRAAALNSNLPPDARQAIWRAMGNG--SLDILYVSPETLLRPAVLD 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+LK++ L+L+AIDEAHC+S WGHDFRP YR+L +L PD P +ALTATA +
Sbjct: 126 RLKQVK----LSLIAIDEAHCLSQWGHDFRPHYRQLDALVEEFPDTPRMALTATADAPTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+++ L + + F+RPN+ Y + KD + L L+ + D IVYCL +
Sbjct: 182 AEIIAHLGIAGLDSFIAGFDRPNINYAIEEKD---NPRRQLQRFLEKHRDESGIVYCLSK 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE +A+L + G + AYHAG++ +AR + + ++VAT+AFGMGID+ DVR
Sbjct: 239 RKTDETAAWLQSEGYNALAYHAGMDREAREANQTRFQREEAVIMVATIAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQSF 385
V H ++P S+EA+YQE+GRAGRD LPS++++ YG DD RRR FI + S +
Sbjct: 299 FVAHLDLPGSIEAYYQETGRAGRDGLPSEAMMLYGFDDIALRRR--FIEESDASDQRKRM 356
Query: 386 STRERSSKKSISDFSQ 401
++ + +++ +Q
Sbjct: 357 EMQKLDALLGLAETAQ 372
>gi|157157237|ref|YP_001465308.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
gi|157079267|gb|ABV18975.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
Length = 609
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 221/338 (65%), Gaps = 15/338 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA---IVY 264
++D++ L L +PL+ +SF+RPN+ Y +L + + L +++ + C I+Y
Sbjct: 189 RQDIVRLLGLNDPLIQINSFDRPNIRY------MLMEKFKPLDQLMRYVQEQCGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|6692125|gb|AAF24590.1|AC007654_6 T19E23.16 [Arabidopsis thaliana]
Length = 849
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/381 (42%), Positives = 234/381 (61%), Gaps = 31/381 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 119 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 178
Query: 94 Q-------------VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
Q V+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE
Sbjct: 179 QYVCYDQLLLMIVQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK 238
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ + FMSKL+K H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++AL
Sbjct: 239 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVAL 298
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKA 255
TATA KVQ D++E L + + SS NRPNLFY VR K L+ D A+ +
Sbjct: 299 TATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYS 358
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N ++ IVYC R C++++ L GIS YHA ++ R V W ++ QV+V T
Sbjct: 359 NNES-GIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGT 417
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQ-----------ESGRAGRDQLPSKSLLYYGM 364
VAFGMGI++ DVR V H ++ KSME +YQ ESGRAGRD LPS+ +L++
Sbjct: 418 VAFGMGINKPDVRFVIHHSLSKSMETYYQVPVSCPLKLDIESGRAGRDGLPSECILFFRS 477
Query: 365 DDRRRMEFILSKNQSKNSQSF 385
D R + +LS + ++S F
Sbjct: 478 ADVPR-QLMLSFSPQQSSMVF 497
>gi|398349668|ref|ZP_10534371.1| DNA helicase [Leptospira broomii str. 5399]
Length = 624
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 234/371 (63%), Gaps = 13/371 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
+ K PL +K+ K+L+ FG A+FR Q ++I+++ GRD ++PTGGGKS+ YQ+P
Sbjct: 4 STKRLPLQKKDDWRKILKASFGFAEFRPGQWESIESIQEGRDVLSILPTGGGKSLIYQLP 63
Query: 74 ALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132
A A K ++LVVSPLIALM++QV LK KG+ + +STQ + +I +GK +R
Sbjct: 64 AFAQKEFLILVVSPLIALMKDQVDSLKGKGLEAAYCNSTQDELEQIRILSGAATGK--IR 121
Query: 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YL 191
+LYV+PE + F+ + K+ L LVA+DEAHC+S WGHDFRP YRKL +LR+ +
Sbjct: 122 ILYVSPERATSRSFLDLVPKLP----LGLVAVDEAHCVSQWGHDFRPEYRKLYTLRSSFH 177
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251
++P +ALTATA +V+KD+ +SL L+NP ++ +++RPNL + +++ + D +L S
Sbjct: 178 ENIPWVALTATATDRVKKDICDSLGLKNPTSVQGTYSRPNLRFRIQFPESERDKEKELLS 237
Query: 252 VL-----KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+L + + AI+YC R+ D++ L G YHAG D +R D + S
Sbjct: 238 ILETGNFRKSNSGKAIIYCATRSKVDDVYEMLKKSGYKVGKYHAGRTDSSREKTQDGYTS 297
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT AFGMG+D +VRLV H+ +P S+E++YQE+GRAGRD S +L++ D
Sbjct: 298 GKTNVLVATNAFGMGLDSPNVRLVLHYQVPSSIESYYQEAGRAGRDGKDSDCVLFFHTSD 357
Query: 367 RRRMEFILSKN 377
F+LSK
Sbjct: 358 LSIQNFLLSKE 368
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/382 (40%), Positives = 235/382 (61%), Gaps = 16/382 (4%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQ+PAL G+
Sbjct: 20 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQVPALCFEGLT 79
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 80 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQ--LKLLYVSPEKV 137
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P PI+ALTA
Sbjct: 138 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTA 193
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 194 TADHATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 248
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 249 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFG 308
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR + HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL +
Sbjct: 309 MGINKSNVRFIAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE 368
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
+ + E+ ++I +F++
Sbjct: 369 TSQRQI---EQHKLEAIGEFAE 387
>gi|156848959|ref|XP_001647360.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
gi|156118046|gb|EDO19502.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
Length = 1332
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 254/451 (56%), Gaps = 42/451 (9%)
Query: 20 LHEK----EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
+HEK + L+ F FR Q DA+ A L G+D F LMPTGGGKS+CYQ+PA+
Sbjct: 536 MHEKYRWTNEVNHKLKSIFKLPGFRPNQEDAVNATLDGKDVFVLMPTGGGKSLCYQLPAM 595
Query: 76 AKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
K G +V+SPLI+LM +QV LK K I + SS T + + + G L
Sbjct: 596 IKSGKTRGTTIVISPLISLMHDQVEHLKSKDIKADMFSSKGTTEQRRNTFNLFILG--LL 653
Query: 132 RLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
++Y++PE+ +A+ +KK++ L + +DEAHC+S+WGHDFRP Y++L +
Sbjct: 654 DIIYISPEMVSASEQCKKAIKKLYVDKKLARIVVDEAHCVSNWGHDFRPDYKELKFFKRE 713
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
PD+P++ALTATA +V D+ +L L++P+ LK SFNR NLFYE+R K+ ++ ++C
Sbjct: 714 YPDIPLMALTATANERVILDINHNLSLKDPVFLKQSFNRTNLFYEIRIKN--KNSIFEMC 771
Query: 251 SVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
+ +K + I+YC + +C++ ++ + G+ C YHAG+ + R V W +
Sbjct: 772 NDIKTRFRNQTGIIYCHSKNSCEQTASLIERSGVKCTYYHAGMEPEDRMKVQQAWQEDKI 831
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
QV+ ATVAFGMGID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R
Sbjct: 832 QVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFKDIRS 891
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGW 429
++ ++ K+Q+ + ++ K+ IS + D K
Sbjct: 892 IQTMIQKDQNLDRENKEKHLNKLKQVISYCDNIADCRRK--------------------- 930
Query: 430 FLSLVLLYYSFHLLKQIPVSLCKNSCDACKH 460
LVL Y++ ++ + C+ +CD CK+
Sbjct: 931 ---LVLSYFN----EKFDEAKCQKNCDNCKN 954
>gi|154506622|ref|ZP_02043079.1| hypothetical protein RUMGNA_03889 [Ruminococcus gnavus ATCC 29149]
gi|153793375|gb|EDN75797.1| ATP-dependent DNA helicase RecQ [Ruminococcus gnavus ATCC 29149]
Length = 763
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/354 (42%), Positives = 219/354 (61%), Gaps = 10/354 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ +FG+ FR Q + I +L+GRD +MPTG GKS+CYQ+PAL GI +V+SP
Sbjct: 16 LQILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISP 75
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM +QV L E GI +++S+ T K E +G+ +++YV PE TP F
Sbjct: 76 LISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGR--YKIVYVAPERLETPRF 133
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAP 205
+ +++V IDEAHCIS WG DFRPSY ++ S LP PI+ A TATA
Sbjct: 134 LD----FACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATK 189
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ D+ E L LQNP V + F+R NL++EV+ + + L+ + D I+YC
Sbjct: 190 RVQTDIREVLKLQNPYVAVTGFDRENLYFEVQ---RTKEKKERIREYLEKHSDESGIIYC 246
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL +L + G S YHAG+ ++AR S +D+I R QV++AT AFGMGID+
Sbjct: 247 ATRKNVDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 306
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+VR V H+N+P+S+E +YQE+GRAGRD PS+ ++YY D +F+L ++
Sbjct: 307 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLLESKEN 360
>gi|242022338|ref|XP_002431597.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
gi|212516905|gb|EEB18859.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
Length = 652
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 209/341 (61%), Gaps = 3/341 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +F ++FR QL+ I A LS D +MPTGGGKS+CYQ+PAL GI LVVSPL+
Sbjct: 73 LLKENFKISEFRPFQLEVINATLSKEDVILIMPTGGGKSLCYQLPALVDKGITLVVSPLV 132
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFM 147
+LME+QV+ LK+ LS+ + + + L P +L+YVTPE L + FM
Sbjct: 133 SLMEDQVMALKKINYPALMLSANSSKEDVKLVTAALQDSCPKHKLIYVTPEKLAKSKRFM 192
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K H +G +AIDE HC S+WGHDFRP Y L L++ P VP+L LTAT+ KV
Sbjct: 193 SQLQKCHQQGRFTRLAIDEVHCCSTWGHDFRPDYNYLGILKDMFPGVPLLGLTATSTSKV 252
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYC 265
DV + L +Q LV+K++FNRPNL+YEV K DL N + I+Y
Sbjct: 253 TADVQKMLNIQGCLVIKATFNRPNLYYEVVLKPSSQSENLDLLENWLKNKFSNKSGIIYT 312
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
C+EL+ L GI YHA L+ + RS + W+S+ QV+VATVAFGMGID+
Sbjct: 313 TAIKECEELTKELRKRGIKAGVYHAMLDAEVRSKMHTKWMSNEYQVIVATVAFGMGIDKP 372
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
DVR V H ++ KSME FYQESGRAGRD S ++ + + D
Sbjct: 373 DVRFVIHHSLSKSMENFYQESGRAGRDGKNSHCIVMFRLAD 413
>gi|301631087|ref|XP_002944639.1| PREDICTED: ATP-dependent DNA helicase recQ-like, partial [Xenopus
(Silurana) tropicalis]
Length = 954
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/346 (45%), Positives = 212/346 (61%), Gaps = 15/346 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIA 89
FG+AQFR Q ++ V++G D LMPTGGGKS+CYQ+PA+ + GI +VVSPLIA
Sbjct: 56 FGYAQFRGPQEAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRRDVGQGITVVVSPLIA 115
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM +QV L E G+ FL+ST Q + L G+ + LLY PE T F+
Sbjct: 116 LMHDQVGALHEAGVEAAFLNSTLDWQQTLDVERRLSHGE--ITLLYAAPERVTTERFLGL 173
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L ++H RG L+L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA +
Sbjct: 174 LDRLHERGQLSLFAIDEAHCVSQWGHDFRPEYRQLSILHERYPGVPRIALTATADELTRV 233
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLE 267
D++E L LQ + SSF+RPN+ Y + K + A L ++ GD +VYC
Sbjct: 234 DIIEGLRLQGARLFLSSFDRPNIRYRIEEK---KEPLAQLLRFIEREHPGD-AGVVYCQS 289
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E++ L+ GI YHAGL R + D ++ VVVAT+AFGMGID+ DV
Sbjct: 290 RKRVEEMAEALAQAGIDALPYHAGLPADMRQAHQDRFLREDGVVVVATIAFGMGIDKPDV 349
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
R V H ++PK++E +YQE+GRAGRD LP+ + + YG+ D +RRM
Sbjct: 350 RFVAHVDMPKNIEGYYQETGRAGRDGLPADAWMVYGLQDVVNQRRM 395
>gi|302772997|ref|XP_002969916.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
gi|300162427|gb|EFJ29040.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
Length = 703
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 215/348 (61%), Gaps = 4/348 (1%)
Query: 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90
R +FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PA+ PG+ LVV PL++L
Sbjct: 29 RRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICCPGVTLVVCPLVSL 88
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSK 149
+ +Q++ L + I E LSS + + +I + L+ RLLYVTPE A + +
Sbjct: 89 IMDQIMHLSQASIRAEHLSSNLEYEEQRQILQQLNFDHCEYRLLYVTPEKIARSDNLLRN 148
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ +H R LL + IDEAHC+S WGHDFRP Y+ L L+ PDVP++ALTATA +V++
Sbjct: 149 LENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFPDVPLMALTATATMRVKE 208
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLER 268
DV+++L L ++ + +FNRPNL Y V K Y ++ + +K N I+YC +
Sbjct: 209 DVVQALGLCKCIIFRQTFNRPNLRYSVVPK--TKKVYEEIDAFIKENYPHESGIIYCFSK 266
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C+ + L G YHA ++ + R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 267 MDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICATVAFGMGINKPDVR 326
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
V H +IPKS+E ++QESGRAGRD LP+ +LYY D R++ +LS+
Sbjct: 327 FVIHHSIPKSIEGYHQESGRAGRDNLPASCILYYSYSDYVRVKHLLSQ 374
>gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM10+]
gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus
str. 91001]
gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
32953]
gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|108810297|ref|YP_646064.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|153947607|ref|YP_001399215.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939115|ref|ZP_02227666.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92]
gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|270488824|ref|ZP_06205898.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294505497|ref|YP_003569559.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|384123966|ref|YP_005506586.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|384127827|ref|YP_005510441.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|384138308|ref|YP_005521010.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|384413065|ref|YP_005622427.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420549046|ref|ZP_15046797.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|420554379|ref|ZP_15051553.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|420560006|ref|ZP_15056434.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|420565382|ref|ZP_15061272.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|420581390|ref|ZP_15075799.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|420586787|ref|ZP_15080681.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|420591869|ref|ZP_15085252.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|420597248|ref|ZP_15090090.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|420602944|ref|ZP_15095145.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|420608335|ref|ZP_15100039.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|420613725|ref|ZP_15104865.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|420619086|ref|ZP_15109540.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|420624397|ref|ZP_15114328.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|420629378|ref|ZP_15118846.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|420639815|ref|ZP_15128223.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|420645253|ref|ZP_15133196.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|420650581|ref|ZP_15137995.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|420661646|ref|ZP_15147913.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|420666997|ref|ZP_15152736.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|420671856|ref|ZP_15157169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|420682761|ref|ZP_15167043.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|420688171|ref|ZP_15171857.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|420693441|ref|ZP_15176465.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|420699163|ref|ZP_15181511.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|420705063|ref|ZP_15186161.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|420710327|ref|ZP_15190893.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|420721372|ref|ZP_15200506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|420726804|ref|ZP_15205306.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|420732302|ref|ZP_15210251.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|420737293|ref|ZP_15214760.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|420742774|ref|ZP_15219685.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|420753919|ref|ZP_15229361.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|420765089|ref|ZP_15238752.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|420780906|ref|ZP_15252870.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|420797138|ref|ZP_15267335.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|420802233|ref|ZP_15271911.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|420812973|ref|ZP_15281585.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|420818445|ref|ZP_15286557.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|420823785|ref|ZP_15291325.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|420828848|ref|ZP_15295891.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|420834430|ref|ZP_15300927.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|420839377|ref|ZP_15305399.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|420844579|ref|ZP_15310118.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|420850225|ref|ZP_15315189.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|420855965|ref|ZP_15320020.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|420861052|ref|ZP_15324517.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|421765358|ref|ZP_16202143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
gi|21957085|gb|AAM83986.1|AE013640_5 ATP-dependent DNA helicase [Yersinia pestis KIM10+]
gi|45437834|gb|AAS63383.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51587839|emb|CAH19442.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108773945|gb|ABG16464.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|108778100|gb|ABG12158.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|115349447|emb|CAL22420.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
gi|145212396|gb|ABP41803.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|149289417|gb|EDM39495.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|152959102|gb|ABS46563.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|162351672|gb|ABX85620.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165912888|gb|EDR31514.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921764|gb|EDR38961.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989444|gb|EDR41745.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205308|gb|EDR49788.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961206|gb|EDR57227.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048747|gb|EDR60155.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167054800|gb|EDR64604.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682488|gb|EEO78575.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|229686865|gb|EEO78944.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695888|gb|EEO85935.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706105|gb|EEO92114.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|262363562|gb|ACY60283.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|262367491|gb|ACY64048.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|270337328|gb|EFA48105.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294355956|gb|ADE66297.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|320013569|gb|ADV97140.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853437|gb|AEL71990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|391421158|gb|EIQ83878.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|391421371|gb|EIQ84073.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|391421448|gb|EIQ84143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|391436188|gb|EIQ97169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|391453252|gb|EIR12582.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|391453411|gb|EIR12729.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|391455260|gb|EIR14393.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|391469060|gb|EIR26879.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|391469818|gb|EIR27555.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|391471272|gb|EIR28850.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|391484954|gb|EIR41152.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|391486455|gb|EIR42485.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|391486548|gb|EIR42569.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|391501084|gb|EIR55520.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|391506158|gb|EIR60104.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|391517115|gb|EIR69950.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|391518917|gb|EIR71596.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|391531438|gb|EIR82932.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|391534305|gb|EIR85494.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|391536661|gb|EIR87623.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|391550077|gb|EIR99727.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|391550347|gb|EIR99969.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|391564613|gb|EIS12805.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|391566044|gb|EIS14081.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|391569386|gb|EIS16980.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|391579599|gb|EIS25700.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|391591637|gb|EIS36175.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|391595137|gb|EIS39212.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|391595868|gb|EIS39867.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|391609696|gb|EIS52066.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|391610048|gb|EIS52385.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|391623135|gb|EIS63973.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|391633409|gb|EIS72815.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|391648413|gb|EIS85930.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|391666018|gb|EIT01535.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|391675612|gb|EIT10109.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|391675850|gb|EIT10329.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|391689548|gb|EIT22669.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|391691498|gb|EIT24422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|391693223|gb|EIT25990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|391706602|gb|EIT38024.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|391707573|gb|EIT38908.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|391710357|gb|EIT41433.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|391722570|gb|EIT52360.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|391722697|gb|EIT52473.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|391723511|gb|EIT53184.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|411173338|gb|EKS43383.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
Length = 610
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 234/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 131
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 132 LDQLYQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 187
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 188 TRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 303 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQD 362
Query: 385 FSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 363 I---ERHKLNAMGAFAE 376
>gi|391330518|ref|XP_003739707.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Metaseiulus
occidentalis]
Length = 876
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/465 (36%), Positives = 257/465 (55%), Gaps = 49/465 (10%)
Query: 24 EALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-KPGI 80
E L +L+ FG+ FR D+Q A Q + G RD F MPTG GKS+C+Q+P A G+
Sbjct: 3 EKLRDVLKKSFGYENFRCDEQRKAAQEIYDGKRDVFVSMPTGAGKSLCFQLPCAADSAGV 62
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VV+PL+ALMENQ+I + I E ++ST + K ++ DL S P +LLYVTPE
Sbjct: 63 TVVVTPLLALMENQIIHARSFKIVTETINSTMSAVDKRRVRGDLMSMSPKTQLLYVTPEQ 122
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT GF+ + + LL +DEAHC+ WGHDFRP Y KL R P VP ALT
Sbjct: 123 IATEGFLEIARALDRLKLLKRFVVDEAHCVLEWGHDFRPDYMKLGRARTEFPQVPWAALT 182
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-DAYADLCSVL------ 253
ATA+ K ++ ++++L L+N +++S R NLFY+V Y++ L + +A L +
Sbjct: 183 ATASKKDEEGIIDALKLRNVFKIRTSSFRKNLFYDVYYRETLHGEEFAHLAGFISDALGK 242
Query: 254 -----KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
K C IVYC R C ++++ L G++ AYHAGL R+ V + W+ +
Sbjct: 243 GWEDEKPEKRGCGIVYCRTRQDCHDVASELQKLGVTSGAYHAGLRPAERTEVQEGWMKGK 302
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
+ AT++FGMGID+ VR V H++ KS+++FYQESGRAGRD P++ +YY + D+R
Sbjct: 303 YSTIAATISFGMGIDKATVRFVAHWSPSKSLKSFYQESGRAGRDGKPARCRVYYSLKDKR 362
Query: 369 RMEFI--LSKNQSKNSQSFSTRERSSKKSISDFSQVLDV--AGKRFSRVLGNRYWDVWPV 424
+ F+ + N+SK+ + +++ S+ ++ +F V+ + A +VL + + D P
Sbjct: 363 SISFLIQMEANKSKSER----KKKHSEIAMKEFDSVVSMFEANSCRHKVLCSEFGDKIPE 418
Query: 425 LPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLG 469
CK CD+C +P + K LG
Sbjct: 419 --------------------------CKTQCDSCTNPKDVDKRLG 437
>gi|213982753|ref|NP_001135548.1| RecQ protein-like 5 [Xenopus (Silurana) tropicalis]
gi|195539645|gb|AAI68026.1| Unknown (protein for MGC:185094) [Xenopus (Silurana) tropicalis]
Length = 1050
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/454 (39%), Positives = 261/454 (57%), Gaps = 36/454 (7%)
Query: 30 LRWHFGHAQFR-DKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG FR D Q +A +AV+ G D F +MPTG GKS+CYQ+PA+ GI +V+SPL
Sbjct: 21 LKNVFGFNSFRSDLQENATRAVVKGETDVFVVMPTGAGKSLCYQLPAVLSVGITVVISPL 80
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L I L+S + + KI +DL+S P ++LLY+TPE+ A+ F
Sbjct: 81 IALIQDQVDHLVALKIKACSLNSKLPLPERKKIIQDLESEAPQIKLLYITPEMAASASFQ 140
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L ++ SR LL+ + IDEAHC+S WGHDFRP Y +L SLR+ +P P +ALTATA +V
Sbjct: 141 PILAQLLSRSLLSYLIIDEAHCVSEWGHDFRPDYLRLGSLRSRIPHTPCVALTATATKQV 200
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT------ 259
Q D++ SL L+ P+ + K+ R NLFY+V+ KDL+ D Y DL LKA G
Sbjct: 201 QDDIIASLKLRQPVSMFKTPCFRSNLFYDVQLKDLVGDPYGDLKEFCLKALGTKTPQGGF 260
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYC R C+E++ LS G+ YHAGL R ++ +DW+ V+VAT++
Sbjct: 261 PGCGIVYCRTRDACEEVAVQLSQRGVLSKPYHAGLKAGDRVTIQNDWMDGTVPVIVATIS 320
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NI KS+ +YQESGRAGRD + LYY DR ++ F++ K
Sbjct: 321 FGMGVDKANVRFVAHWNIAKSLAGYYQESGRAGRDGKQAFCRLYYSRTDRDQVGFLIRKE 380
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
++ + S K ++ F ++ F G R+ + + Y
Sbjct: 381 IAQAQAKRGDNKASDKAGMAGFDAMVS-----FCEDTGCRH-------------AAIAAY 422
Query: 438 YSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + C SCD+CK+P + + + +L
Sbjct: 423 FGDEKPQ------CNKSCDSCKNPLAVKRQVEQL 450
>gi|315635218|ref|ZP_07890495.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
gi|315475964|gb|EFU66719.1| ATP-dependent helicase RecQ [Aggregatibacter segnis ATCC 33393]
Length = 629
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 216/335 (64%), Gaps = 13/335 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + IQA L+G+DC +M TG GKS+CYQIPAL G+ LVVSPLI+LM++
Sbjct: 39 FGYQAFRKGQEEIIQAALNGQDCLVIMATGTGKSLCYQIPALCFDGMTLVVSPLISLMKD 98
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ ++L+S+QT + + ++ SG+ L+LLY++PE T F +
Sbjct: 99 QVDQLRASGVEADYLNSSQTFEEQQQVQNRAISGQ--LKLLYLSPEKVMTNSFFQFI--- 153
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+VPI+ALTATA P Q+D+++
Sbjct: 154 -SLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADPTTQQDILQ 212
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L P SF+RPN+ Y + ++K + LC + A IVYC R
Sbjct: 213 NLRLNRPHFHVGSFDRPNIRYTLVEKFKPM-----EQLCRFVVAQKGKSGIVYCNSRNKV 267
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+ ++ L G+ AAYHAG+ + R V D+ QVVVAT+AFGMGI++ +VR V
Sbjct: 268 ERIAETLCNKGVRAAAYHAGMENSLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPAD 362
>gi|225011808|ref|ZP_03702246.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
gi|225004311|gb|EEG42283.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
Length = 729
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 221/355 (62%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG + F+ Q I +L+ + F +MPTGGGKS+CYQ+PAL + G +VVS
Sbjct: 6 LKKALKKHFGFSTFKGLQESVITHMLNKENSFVIMPTGGGKSLCYQLPALMQEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS V+ ++ D+ SG +LLYV PE
Sbjct: 66 PLIALMKNQVDAIRGISSENGIAHVLNSSLNKTAVE-QVKSDIRSG--ITKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ + K + ++ +A+DEAHCIS WGHDFRP YR L ++ L +PI+ALT
Sbjct: 123 SKRENIDFFKSVK----ISFLAVDEAHCISEWGHDFRPEYRNLRAILEQLEQPIPIIALT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+DVM++L + + K+SFNRPNL+YEVR K D+ D+ +K N
Sbjct: 179 ATATPKVQEDVMKNLRISGARLFKASFNRPNLYYEVRPKTGQVDS--DIIRFIKQNSGKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI+ YHAGL+ K+R + D ++ V+VAT+AFGM
Sbjct: 237 GIIYCLSRKRVEELAQTLQVNGINALPYHAGLDSKSRVNNQDQFLKDDCDVIVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 297 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS 351
>gi|357060591|ref|ZP_09121359.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355375896|gb|EHG23164.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 608
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 224/355 (63%), Gaps = 7/355 (1%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR KQ + I VL GRDCF LMPTGGGKS+CYQIPA PG+ +VVSP
Sbjct: 4 LQALKKYFGYNSFRPKQAEIIDTVLGGRDCFVLMPTGGGKSVCYQIPAALLPGLTIVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L E GI ++S+ ++ ++ E +G + +L+Y++PE
Sbjct: 64 LISLMKDQVESLLEAGIPACAINSSLPLEQSVQLQEACVNG--AYKLVYLSPE-----AL 116
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L SR ++LVAIDEAHCIS WGHDFRP Y +L +R LP+VP++ALTATA
Sbjct: 117 LASLHGWISRAKISLVAIDEAHCISQWGHDFRPEYTQLGEIRRDLPNVPMMALTATADKV 176
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D+++ L L NP + SSF+RPNL V + + L+ I+YC+
Sbjct: 177 TREDILQQLGLHNPYISVSSFDRPNLSLTVIRGFNGSEKLKAILRFLRERPGQAGIIYCM 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T + ++ L+A G+ +YHAGL+ R +I+ Q++VATVAFGMGID+ +
Sbjct: 237 SRKTTESVAEKLTAKGVRALSYHAGLSADVRDKTQTAFINDDVQIIVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
VR V H+N+PKS+E++YQE GRAGRD P+ +LL+Y D ++E + +N
Sbjct: 297 VRWVVHYNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIIQLERFAQDSGQQN 351
>gi|334183459|ref|NP_176289.7| RECQ helicase L4B [Arabidopsis thaliana]
gi|75334305|sp|Q9FT70.1|RQL4B_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4B; AltName:
Full=RecQ-like protein 4B; Short=AtRecQ4B;
Short=AtRecQl4B
gi|11121451|emb|CAC14869.1| DNA Helicase [Arabidopsis thaliana]
gi|332195628|gb|AEE33749.1| RECQ helicase L4B [Arabidopsis thaliana]
Length = 1150
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/436 (38%), Positives = 249/436 (57%), Gaps = 25/436 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 465 FGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQD 524
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I+ LS+ + +I ++L S K +LLYVTPE A + + L+
Sbjct: 525 QIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEI 584
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SR LL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 585 LNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVV 644
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K + D+ ++ N D C I+YCL R C
Sbjct: 645 QALGLVNCVVFRQSFNRPNLWYSVVPK--TNKCLEDIDKFIRENHFDECGIIYCLSRMDC 702
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR V
Sbjct: 703 EKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 762
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTR 388
H ++PKS+E ++QE GRAGRD S +LYY D R++ ++S+ Q + ++ +
Sbjct: 763 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCK 822
Query: 389 ERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPV 448
S + ++ +L + + V R FL LV HL ++
Sbjct: 823 ASSGRMLETNTENLLRMVSYCENEVDCRR------------FLQLV------HLGEKFDS 864
Query: 449 SLCKNSCDACKHPNLL 464
+ CKN+CD C +L
Sbjct: 865 TNCKNTCDNCSSSKIL 880
>gi|421853205|ref|ZP_16285883.1| DNA helicase RecQ [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478547|dbj|GAB31086.1| DNA helicase RecQ [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 626
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 227/363 (62%), Gaps = 9/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 30 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 89
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 90 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 147
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 148 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 203
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 204 REDILAALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 260
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G AYHAGL+ + + L + S V+VAT+AFGMGIDR DV
Sbjct: 261 RARTERMAASLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATIAFGMGIDRPDV 320
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 321 RAVVHLDMPASPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 380
Query: 388 RER 390
R R
Sbjct: 381 RSR 383
>gi|291569161|dbj|BAI91433.1| ATP-dependent DNA helicase [Arthrospira platensis NIES-39]
Length = 739
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 241/400 (60%), Gaps = 9/400 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
L + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 8 LAQPQSLQQCLKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPG 67
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV LK GI FL+ST + Q + + + L GK ++LLYV P
Sbjct: 68 LTVVVSPLIALMQDQVEALKNNGIEATFLNSTVDLNQARQREFAIL-QGK--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L +I + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLGFLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D++ + L+ P V +SF R NL+Y+V K L ++ +G
Sbjct: 185 LTATATERVRFDIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLLKAIESMSG- 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 -SGIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ Q + R + + D+++ + + R G +
Sbjct: 363 DVDEQRIA---RQQLRQVIDYAESTECRHRIQLRYFGEEF 399
>gi|452005277|gb|EMD97733.1| hypothetical protein COCHEDRAFT_1190502 [Cochliobolus
heterostrophus C5]
Length = 485
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 222/377 (58%), Gaps = 25/377 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F A FR Q + + A L G+D F T GKS+CYQ+PA+ GI +V+SPL+A
Sbjct: 16 LRKVFKKAAFRPPQREVVLATLEGQDVFVQAATSFGKSLCYQLPAVVDFGITIVISPLLA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQV L+ I E ++ST + + +I DL G P RLLYVTPE F
Sbjct: 76 LMNNQVASLRNANIRVETINSTTPTEDRKRILADLQCGHPLTRLLYVTPEFCQGDHFRKI 135
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ IHS+ L +A+DEAHC+S WGHDFRPS+++LS + PDVP++ LTATA +V+
Sbjct: 136 LRVIHSQRELARIAVDEAHCVSEWGHDFRPSFQQLSFFKTEFPDVPVICLTATATARVRD 195
Query: 210 DVMESLCL--QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------------ 255
D++ +L L + + + + +RPNL YEVR+K +D Y D S+LK
Sbjct: 196 DIINTLALDPKKLAMFRMTSSRPNLHYEVRFKSDEEDHYDDFLSLLKGIYARRAERPERV 255
Query: 256 ---------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ I+Y L R C+ L+ L + GI YHAGL+ R+ L WI+
Sbjct: 256 TQLASQNQRTDNVPGIIYTLFRKDCESLAERLRSDGIGAKPYHAGLSVFERADALSGWIA 315
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
++ ++VAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD S +LYYG
Sbjct: 316 NKPGYDIIVATTAFGMGIDKENVRFVVHWQIPKSFEGFYQEAGRAGRDGKASLCILYYGR 375
Query: 365 DDRRRMEFILSKNQSKN 381
+DR R +++++ ++
Sbjct: 376 EDRDRAANMMARDMTRQ 392
>gi|343501055|ref|ZP_08738938.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|418477793|ref|ZP_13046915.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819043|gb|EGU53890.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|384574570|gb|EIF05035.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 612
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 218/335 (65%), Gaps = 9/335 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L FG+ FRD Q + I++ ++G+D +MPTGGGKS+CYQIPALA+ G+ LVVSPL
Sbjct: 19 RILEDVFGYQSFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALAREGLTLVVSPL 78
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A E ++ST + +Y + SG +L+L+YV+PE F+
Sbjct: 79 ISLMKDQVDQLKANGVAAECVNSTMPREELISVYNRMHSG--ALKLVYVSPERVLMRDFI 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ I L+++A+DEAHCIS WGHDFRP Y L L+ + P +P++ALTATA
Sbjct: 137 ERLENIS----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQHFPHIPVMALTATADDAT 192
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+KD+M+ L L P SF+RPN+ Y + K + + L+ +C I+YC
Sbjct: 193 RKDIMQRLQLDEPHTYLGSFDRPNIRYTLVEKH---KPVSQVVRFLEGQRGSCGIIYCGS 249
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++ L G+ A+YHAGL R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 250 RKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPNV 309
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 310 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 344
>gi|260770707|ref|ZP_05879637.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
gi|260614288|gb|EEX39477.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
Length = 611
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 215/334 (64%), Gaps = 9/334 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FRD Q + I++ ++GRD +MPTGGGKS+CYQIPALA+ G+ +V+SPLI
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK G+A E ++STQ+ + IY + SG+ L+LLYV+PE T F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQ--LKLLYVSPERVLTGEFIE 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P VPI+ALTATA +
Sbjct: 137 RLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFPQVPIMALTATADDATR 192
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L +P V SF+RPN+ Y + K + + L C I+YC R
Sbjct: 193 SDILSRLNLTDPHVYLGSFDRPNIRYTLMEK---HKPVSQVIRYLDTQKGHCGIIYCGSR 249
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ L I A YHAG++ R+ V + + Q+VVATVAFGMGI++ +VR
Sbjct: 250 KKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVR 309
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 310 FVVHFDIPRNIESYYQETGRAGRDGLPAEAVMLY 343
>gi|395804511|ref|ZP_10483749.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395433398|gb|EJF99353.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 768
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 216/343 (62%), Gaps = 11/343 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I +LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 EILHATLKENFGFEKFRPNQETIINTILSGQDALAIMPTGGGKSICFQLPALILPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++STQ+ Q + ++L S +L+YV PE
Sbjct: 64 ISPLIALMKDQVDSLKTNGISACYINSTQSSQEQQYYIDNLKSN--HFKLVYVAPE---- 117
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L S ++L+AIDEAHCISSWGHDFRP+Y L L++ P PILALTATA
Sbjct: 118 --SLSYLDMAFSELNISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRTDISKQLNLKNPKTFIASFDRKNLSLEVRPAL---DRVKQIIDFIENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L GI AYHAGL+++ R+ D +I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKATEELAEKLRKNGIEAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYAD 335
>gi|339327532|ref|YP_004687225.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
gi|338167689|gb|AEI78744.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
Length = 628
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 233/406 (57%), Gaps = 25/406 (6%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--- 75
PL AL +L+ FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL
Sbjct: 11 PLSMSHALA-ILKDVFGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQ 69
Query: 76 -AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
A G+ +VVSPLIALM++QV L E G+ L+ST T + + DL +G+ + +L
Sbjct: 70 RAGDGVGIVVSPLIALMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEIL 127
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
YV PE TP F L++I + L AIDEAHC+S WGHDFRP Y +LS L P V
Sbjct: 128 YVAPERLMTPRFQDLLERIR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYV 183
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
P +ALTATA + +++E L L N V SSF+RPN+ Y + K D+A L + +K
Sbjct: 184 PRIALTATADALTRNEIIERLALDNARVFISSFDRPNIRYRIVEK---DNARQQLLAFIK 240
Query: 255 ANGDTC------AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
A IVYCL R ++ + +LS GI+ YHAG++ + R +
Sbjct: 241 AEHTAADGTHDSGIVYCLSRKKVEDTAQWLSGQGINALGYHAGMDAQVRQHHQARFREEE 300
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+VAT+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D
Sbjct: 301 GLVMVATIAFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-- 358
Query: 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVL 414
+ K S++ +R S + + + AG R R+L
Sbjct: 359 ---VVQQKRMIDESEADEAFKRVSSSKLDALLGLCETAGCRRVRIL 401
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 233/377 (61%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 131
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 132 LDQLYQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 187
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 188 TRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R V + + QVVVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRGQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 303 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQD 362
Query: 385 FSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 363 I---ERHKLNAMGAFAE 376
>gi|423111286|ref|ZP_17098981.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
gi|423117298|ref|ZP_17104989.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376376415|gb|EHS89194.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376377058|gb|EHS89832.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
Length = 608
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLSDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|410075411|ref|XP_003955288.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
gi|372461870|emb|CCF56153.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
Length = 1318
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/493 (35%), Positives = 272/493 (55%), Gaps = 51/493 (10%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG---- 79
E + + L F FR Q +A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 539 EEVEERLHGVFKLPGFRPNQEEAVNATLDGKDVFVLMPTGGGKSLCYQLPAIVKSGRTRG 598
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L K I SS T + + + + G L ++Y++PE
Sbjct: 599 TTIVISPLISLMQDQVEHLLAKNIKASMFSSKGTSEERRQTFNLFIHG--LLDVVYISPE 656
Query: 140 L-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ +A+ + K+++ G L V +DEAHC+S+WGHDFRP Y++L + P +P++A
Sbjct: 657 MISASQQCKRAIDKLYTDGNLARVVVDEAHCVSNWGHDFRPDYKELKMFKVEYPTIPMMA 716
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA+ +V D++ +L L+N + LK SFNR NL+YEV+ KD D ++C ++K
Sbjct: 717 LTATASKQVIMDIIHNLGLKNEVFLKQSFNRTNLYYEVKKKD--KDTMNNICDMIKNRFR 774
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ I+YC + +C+++S+ L I CA YHAG+ + RS+V W QV+ ATVA
Sbjct: 775 NQTGIIYCHSKNSCEQVSSQLQRKNIRCAYYHAGMEPEERSAVQKAWQEDEIQVICATVA 834
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H+ +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+
Sbjct: 835 FGMGIDKPDVRFVIHYTVPRTLEGYYQETGRAGRDGNYSYCVTYFHFKDIRTMQTMIQKD 894
Query: 378 QSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLY 437
Q+ + + + +K ++ +V+ Y D LVL Y
Sbjct: 895 QNLDRE-------NKQKHLNKLQEVM-------------AYCDNI----TDCRRKLVLSY 930
Query: 438 YSFHLLKQIPVSLCKNSCDACKH-PNL---------LAKYLGELTSAVLQKNHFSQIFIS 487
++ + +LC +CD CK+ N+ LAK + L A+ H I
Sbjct: 931 FN----EDFNPALCAKNCDNCKNRSNITLEKRDVTGLAKDIARLVEAI---QHDRVTLIH 983
Query: 488 SQDMTDGGQYSEF 500
QD+ G + S+
Sbjct: 984 CQDIFKGSRNSKI 996
>gi|367009466|ref|XP_003679234.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
gi|359746891|emb|CCE90023.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
Length = 1364
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 224/356 (62%), Gaps = 10/356 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 601 LREIFKLPGFRPHQLEAINATLSGKDVFVLMPTGGGKSLCYQLPAVVKSGKTKGTTIVIS 660
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L I SS T + + + + G L L+Y++PE+ +A+
Sbjct: 661 PLISLMQDQVEHLLSNNIKASMFSSKGTAEQRRQTFNLFIHG--LLDLIYISPEMISASE 718
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ K+++ G L + +DEAHC+S+WGHDFRP Y++L + PDVP++ALTATA+
Sbjct: 719 QCKRGINKLYNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMIALTATAS 778
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ D++ +L L+ P+ LK SFNR NLFYE+ K ++ ++C +K + I+
Sbjct: 779 EQVRMDIIHNLELKEPVFLKQSFNRTNLFYEILKK--TKNSIFEICDTIKIRFRNQTGII 836
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ +A + GI CA YHAG+ R ++ W + QV+ ATVAFGMGID
Sbjct: 837 YCHSKNSCEQTAAQMQRSGIKCAFYHAGMEPDDRLTIQKAWQADEIQVICATVAFGMGID 896
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R ++ ++ K+++
Sbjct: 897 KPDVRFVYHFTVPRTLEGYYQETGRAGRDGKFSYCMAYFSFRDVRTIQTMIQKDKN 952
>gi|409992245|ref|ZP_11275447.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
gi|409936909|gb|EKN78371.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
Length = 739
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 241/400 (60%), Gaps = 9/400 (2%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
L + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 8 LAQPQSLQQCLKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPG 67
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV LK GI FL+ST + Q + + + L GK ++LLYV P
Sbjct: 68 LTVVVSPLIALMQDQVEALKNNGIEATFLNSTVDLNQARQREFAIL-QGK--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L +I + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLGFLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D++ + L+ P V +SF R NL+Y+V K L ++ +G
Sbjct: 185 LTATATERVRFDIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLLKAIESMSG- 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 -SGIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRY 418
+ Q + R + + D+++ + + R G +
Sbjct: 363 DVDEQRIA---RQQLRQVIDYAESTECRHRIQLRYFGEEF 399
>gi|432555903|ref|ZP_19792618.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
gi|431080717|gb|ELD87511.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
Length = 611
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 220/337 (65%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR+V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRVVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|425307629|ref|ZP_18697292.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
gi|408224965|gb|EKI48662.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|416333516|ref|ZP_11670743.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
gi|320197630|gb|EFW72242.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|238892418|ref|YP_002917152.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|365144577|ref|ZP_09348793.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|378976322|ref|YP_005224463.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386037440|ref|YP_005957353.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|402783066|ref|YP_006638612.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419976110|ref|ZP_14491512.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981887|ref|ZP_14497157.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987417|ref|ZP_14502537.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992987|ref|ZP_14507936.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999205|ref|ZP_14513983.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004974|ref|ZP_14519604.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010567|ref|ZP_14525038.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420016807|ref|ZP_14531094.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022207|ref|ZP_14536378.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027870|ref|ZP_14541857.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033622|ref|ZP_14547424.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039320|ref|ZP_14552956.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045195|ref|ZP_14558666.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051125|ref|ZP_14564416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056758|ref|ZP_14569910.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061820|ref|ZP_14574803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068079|ref|ZP_14580864.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073504|ref|ZP_14586129.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079309|ref|ZP_14591756.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085306|ref|ZP_14597536.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421908873|ref|ZP_16338705.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421917229|ref|ZP_16346791.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424833268|ref|ZP_18257996.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424930893|ref|ZP_18349265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425084062|ref|ZP_18487159.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425094091|ref|ZP_18497174.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428151187|ref|ZP_18998930.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428934219|ref|ZP_19007747.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|428939135|ref|ZP_19012250.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|238544734|dbj|BAH61085.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|339764568|gb|AEK00789.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|363648000|gb|EHL87187.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|364515733|gb|AEW58861.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341372|gb|EJJ34552.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342014|gb|EJJ35183.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397344702|gb|EJJ37833.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358598|gb|EJJ51314.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359601|gb|EJJ52294.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363627|gb|EJJ56265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397374431|gb|EJJ66767.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378264|gb|EJJ70477.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397385030|gb|EJJ77135.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392581|gb|EJJ84369.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394580|gb|EJJ86306.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403296|gb|EJJ94873.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409845|gb|EJK01145.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410215|gb|EJK01502.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420262|gb|EJK11348.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427007|gb|EJK17798.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429873|gb|EJK20579.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437837|gb|EJK28380.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397443829|gb|EJK34130.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449321|gb|EJK39461.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402543905|gb|AFQ68054.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405597672|gb|EKB70935.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405610253|gb|EKB83062.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805080|gb|EKF76331.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410117240|emb|CCM81330.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120477|emb|CCM89416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414710718|emb|CCN32422.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426303386|gb|EKV65559.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|426304490|gb|EKV66633.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|427538860|emb|CCM95068.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 608
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 238/383 (62%), Gaps = 19/383 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFAE 376
>gi|170593171|ref|XP_001901338.1| Bloom's syndrome protein homolog [Brugia malayi]
gi|158591405|gb|EDP30018.1| Bloom's syndrome protein homolog, putative [Brugia malayi]
Length = 1054
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 225/397 (56%), Gaps = 24/397 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ +L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 285 MYHILKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAILSKGITVVIS 344
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S +IY L+ P ++LLYVTPE + A+
Sbjct: 345 PLKSLIEDQKMKMKELEICCYALTSELNQAESDRIYSMLNESSPKIKLLYVTPEKIAASE 404
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H R LL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 405 KLNNMFFSLHRRDLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 464
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---------RYKDLLDDAYADLCSVL 253
A PK+ D+ L +Q + SSF R NL Y+V R D + Y D
Sbjct: 465 ATPKIVTDIRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLVRVMDRMKILYPD----- 519
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
IVYCL R C+ +S L IS YHAGL+DK R V WIS++ V+
Sbjct: 520 -----KSGIVYCLSRRDCELVSKMLENHAISSEVYHAGLSDKKRLEVQTKWISNQVNVIC 574
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V HF++PKS+EA+YQE+GRAGRD L S + Y +D R+ +
Sbjct: 575 ATIAFGMGIDKPDVRFVIHFSMPKSIEAYYQETGRAGRDGLNSYCAILYSYNDSVRIRKM 634
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRF 410
+ N+Q T +S I + + + + ++
Sbjct: 635 IEG--ENNTQGVRTMHLNSVLQIVAYCENVSICRRKL 669
>gi|148221|gb|AAA67618.1| DNA-dependent ATPase, DNA helicase [Escherichia coli str. K-12
substr. MG1655]
Length = 610
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|410611522|ref|ZP_11322620.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
gi|410168940|dbj|GAC36509.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
Length = 605
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 222/367 (60%), Gaps = 15/367 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ +FRD Q I V+ +D LMPTGGGKS+CYQIPA+ PG+ +VVSPL
Sbjct: 17 QVLKQTFGYDRFRDGQAQVITQVMQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ +++ST + Q IY+ + K +L+YV PE F+
Sbjct: 77 ISLMKDQVDALLTYGVNAAYINSTLSSQDMFNIYKGMQDDK--YQLIYVAPERLMQLDFI 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ + ++L+A+DEAHC+S WGHDFR YR L L+ P +PI+ LTATA
Sbjct: 135 QRLQGL----TISLIAVDEAHCVSHWGHDFRKDYRLLGQLKGTFPHIPIMGLTATADLAT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ + L LQ P + K SF+RPN +RY + + D I+YC
Sbjct: 191 RADITQQLNLQQPFIFKGSFDRPN----IRYNQITKYKATEQAIAFIKQQDGSGIIYCNS 246
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R D+LS L+ GI+CA YHAGL R + D+I + ++VATVAFGMGID+ +V
Sbjct: 247 RRKVDDLSIALAKQGINCAGYHAGLEGAIRDKIQRDFIQDKIDIIVATVAFGMGIDKSNV 306
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS--KNQSKNS--- 382
R V HF++P+S+E++YQE GRAGRD +P+++LL + D R+ +S +N +NS
Sbjct: 307 RFVLHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWISTGENLERNSVEL 366
Query: 383 QSFSTRE 389
Q F+ E
Sbjct: 367 QKFAAME 373
>gi|152972806|ref|YP_001337952.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329997483|ref|ZP_08302785.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|449059651|ref|ZP_21737339.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
gi|150957655|gb|ABR79685.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|328539051|gb|EGF65090.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|448874669|gb|EMB09708.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
Length = 608
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 237/382 (62%), Gaps = 17/382 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFG
Sbjct: 238 SGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 355 KPAGPLQDIERHKLNAMGAFAE 376
>gi|408399479|gb|EKJ78580.1| hypothetical protein FPSE_01246 [Fusarium pseudograminearum CS3096]
Length = 1673
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 222/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 823 RMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTRGVTIV 882
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ + P L LLYVTPE+
Sbjct: 883 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNERSPEHFLELLYVTPEMV 942
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + L+ +H +G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 943 SKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVRQKYPGVPVMALT 1002
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + + SFNRPNL+YEVR K + + S++++N +
Sbjct: 1003 ATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEKTIESIASLIQSNYANK 1062
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R + ++++ LS GI+ YHAG + + + V + W + +VVVAT+AFG
Sbjct: 1063 SGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQRGQVKVVVATIAFG 1122
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H IPKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1123 MGIDKPDVRFVIHHGIPKSLEGYYQETGRAGRDGNPSDCILFYGKADIRVLKKLIADGDG 1182
Query: 380 KNSQ 383
+ Q
Sbjct: 1183 SHEQ 1186
>gi|425078981|ref|ZP_18482083.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084628|ref|ZP_18487721.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405589261|gb|EKB62831.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608866|gb|EKB81789.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 608
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 238/383 (62%), Gaps = 19/383 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFAE 376
>gi|328770877|gb|EGF80918.1| hypothetical protein BATDEDRAFT_10941 [Batrachochytrium
dendrobatidis JAM81]
Length = 573
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 239/402 (59%), Gaps = 19/402 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
+ K+L+ F FR QL++I A L+ DCF LMPTGGGKS+CYQ+PA G +
Sbjct: 32 VFKVLQEVFHLTDFRQNQLESINATLNSIDCFILMPTGGGKSLCYQLPACCTTGKTTGLT 91
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPL++L+++QV L + I +SS + + K Y++L +++YVTPEL
Sbjct: 92 VVISPLLSLIQDQVSRLVQLNILAIAISSDMSAEDKRWAYDELRKEPLPPKMIYVTPELV 151
Query: 142 ATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
G F + L + RG L +DEAHC+S WGHDFRP Y++LS+LR P VPI+ALT
Sbjct: 152 MRSGQFKTALNDLFRRGRLARFVVDEAHCVSQWGHDFRPDYKELSTLRVQYPTVPIIALT 211
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDT 259
ATA KV+ D+++ L + + SFNR NL Y+VR KD DA D+ + +K +
Sbjct: 212 ATANDKVKMDIIKVLNIPQCAKFQQSFNRSNLRYDVRKKDKGLDA--DITAFIKTFYPNA 269
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R C+ SA L GI A YHAGL+ + RS + W ++ ++VAT+AFG
Sbjct: 270 SGIIYCSSRKACEATSAKLCKLGIKAAFYHAGLDKEDRSRIQTAWATNSVHIIVATIAFG 329
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H++IP+S+E +YQE+GRAGRD S +LYY D+ ++F++ +
Sbjct: 330 MGIDKGDVRFVIHYSIPQSLEGYYQETGRAGRDGKDSMCILYYAYKDKSTIDFLIENGEG 389
Query: 380 KNSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSR 412
Q R+R++ + I + QVL G+RF +
Sbjct: 390 NYEQ--KERQRNNLRQIISYCENLVDCRRQQVLAYFGERFDK 429
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/355 (43%), Positives = 223/355 (62%), Gaps = 13/355 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKTTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKPM-----EQLIRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAFRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 355
>gi|337277744|ref|YP_004617215.1| ATP-dependent DNA helicase [Ramlibacter tataouinensis TTB310]
gi|334728820|gb|AEG91196.1| Candidate ATP-dependent DNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 621
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 217/354 (61%), Gaps = 11/354 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP----G 79
+A + +LR FG+ QFR Q ++ V++G D LMPTGGGKS+CYQ+PA+A+ G
Sbjct: 2 QAPLSILREVFGYEQFRGPQAAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIARQRAGHG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
I +VVSPLIALM +QV L E G+ FL+ST + + + + L G+ + LLY PE
Sbjct: 62 ITVVVSPLIALMHDQVGALHEAGVEAAFLNSTLSGEEAAGVEKRLLRGE--VTLLYAAPE 119
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
TP F+++L +H RG L L AIDEAHC+S WGHDFRP YR L+ L VP +AL
Sbjct: 120 RVTTPRFLAQLDSLHQRGQLALFAIDEAHCVSQWGHDFRPEYRALTVLHERFAGVPRIAL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA + D++E L L++ SSF+RPN+ Y + K D L + +
Sbjct: 180 TATADALTRADIVERLQLEDAREFVSSFDRPNISYTIVEKK--DPTLQLLRFIEGEHAGE 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC R +E + LS G++ YHAGL+ + R D ++ V+VAT+AFG
Sbjct: 238 AGIVYCQSRKRVEETAQTLSGQGLTALPYHAGLDTEVRQRHQDRFLREDGIVMVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
MGID+ DVR V H ++PK++E +YQE+GRAGRD LP+ + + YG+ D +RRM
Sbjct: 298 MGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPAAAWMAYGLQDVVNQRRM 351
>gi|433323990|ref|ZP_20401319.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|433327299|ref|ZP_20403746.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432344992|gb|ELL39536.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432347541|gb|ELL42000.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|432682606|ref|ZP_19917956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
gi|431216878|gb|ELF14470.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKAEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|445053267|ref|ZP_21368273.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
gi|444659629|gb|ELW32037.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0083]
Length = 603
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 9 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 68
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 69 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 126
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 127 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 182
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 183 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 238 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 298 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 334
>gi|417692248|ref|ZP_12341449.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
gi|332084419|gb|EGI89615.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|260846402|ref|YP_003224180.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|419302912|ref|ZP_13844902.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|419869038|ref|ZP_14391264.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
gi|257761549|dbj|BAI33046.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
12009]
gi|378146097|gb|EHX07251.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11C]
gi|388343371|gb|EIL09335.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H2 str.
CVM9450]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|218707455|ref|YP_002414974.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMN026]
gi|417588964|ref|ZP_12239725.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
gi|218434552|emb|CAR15481.1| ATP-dependent DNA helicase [Escherichia coli UMN026]
gi|345331100|gb|EGW63561.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|7428315|pir||BVECRQ DNA helicase recQ - Escherichia coli (strain K-12)
Length = 610
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|419765474|ref|ZP_14291711.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741738|gb|EJK88959.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 608
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 238/383 (62%), Gaps = 19/383 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFAE 376
>gi|432855825|ref|ZP_20083516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
gi|431397110|gb|ELG80571.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLTHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|301025732|ref|ZP_07189247.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|419918818|ref|ZP_14436995.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
gi|300395855|gb|EFJ79393.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|388389458|gb|EIL50989.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|417173851|ref|ZP_12003647.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|417185330|ref|ZP_12010731.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
gi|386176543|gb|EIH54022.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2608]
gi|386182630|gb|EIH65386.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0624]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|293407448|ref|ZP_06651368.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298383188|ref|ZP_06992782.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300900624|ref|ZP_07118784.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|419937477|ref|ZP_14454373.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|422335405|ref|ZP_16416404.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|432355858|ref|ZP_19599118.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|432404223|ref|ZP_19646965.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|432428490|ref|ZP_19670969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|432463191|ref|ZP_19705321.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|432478186|ref|ZP_19720170.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|432491658|ref|ZP_19733516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|432520039|ref|ZP_19757217.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|432540207|ref|ZP_19777097.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|432633771|ref|ZP_19869687.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|432643423|ref|ZP_19879243.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|432668418|ref|ZP_19903986.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|432772598|ref|ZP_20006908.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|432841683|ref|ZP_20075137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|432889621|ref|ZP_20102893.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|432915492|ref|ZP_20120747.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|433021080|ref|ZP_20209155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|433055454|ref|ZP_20242605.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|433070190|ref|ZP_20256950.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|433160980|ref|ZP_20345793.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|433180699|ref|ZP_20365069.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|433205578|ref|ZP_20389319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
gi|291425559|gb|EFE98597.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298276424|gb|EFI17943.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300355875|gb|EFJ71745.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|373243555|gb|EHP63057.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|388397659|gb|EIL58631.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|430872071|gb|ELB95690.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|430922543|gb|ELC43295.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|430950316|gb|ELC69702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|430985141|gb|ELD01748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|431001695|gb|ELD17271.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|431017014|gb|ELD30531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|431047458|gb|ELD57458.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|431066698|gb|ELD75322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|431166942|gb|ELE67245.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|431177006|gb|ELE76946.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|431197038|gb|ELE95905.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|431323251|gb|ELG10799.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|431384955|gb|ELG68945.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|431413215|gb|ELG96009.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|431435094|gb|ELH16707.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|431526412|gb|ELI03166.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|431565194|gb|ELI38332.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|431578296|gb|ELI50904.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|431673078|gb|ELJ39309.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|431697564|gb|ELJ62670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|431715540|gb|ELJ79688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|419926481|ref|ZP_14444247.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
gi|388382669|gb|EIL44516.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
Length = 611
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|74314334|ref|YP_312753.1| ATP-dependent DNA helicase RecQ [Shigella sonnei Ss046]
gi|157163298|ref|YP_001460616.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|162135918|ref|YP_026263.3| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170083303|ref|YP_001732623.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. K-12 substr.
DH10B]
gi|187734194|ref|YP_001882520.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188494940|ref|ZP_03002210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218697543|ref|YP_002405210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 55989]
gi|218701485|ref|YP_002409114.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI39]
gi|222158515|ref|YP_002558654.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238902897|ref|YP_002928693.1| ATP-dependent DNA helicase RecQ [Escherichia coli BW2952]
gi|254795820|ref|YP_003080657.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14359]
gi|260857772|ref|YP_003231663.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|293468140|ref|ZP_06664552.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|383181074|ref|YP_005459079.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|386601849|ref|YP_006103355.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|386616632|ref|YP_006136298.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|386641456|ref|YP_006108254.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|387509272|ref|YP_006161528.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|387609630|ref|YP_006098486.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|388479428|ref|YP_491620.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|407466829|ref|YP_006786729.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484445|ref|YP_006781595.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484991|ref|YP_006772537.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578705|ref|ZP_11435867.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|415773800|ref|ZP_11486365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|415786023|ref|ZP_11493337.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|415811064|ref|ZP_11503414.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|415846355|ref|ZP_11525434.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|417583446|ref|ZP_12234244.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|417615484|ref|ZP_12265932.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|417620493|ref|ZP_12270894.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|417631303|ref|ZP_12281535.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|417636778|ref|ZP_12286983.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|417641842|ref|ZP_12291966.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|417675001|ref|ZP_12324430.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|417709647|ref|ZP_12358664.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|417807513|ref|ZP_12454440.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|417829992|ref|ZP_12476531.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|417835254|ref|ZP_12481693.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|417945670|ref|ZP_12588900.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|417977689|ref|ZP_12618470.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|418269891|ref|ZP_12888068.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|418305454|ref|ZP_12917248.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|419043191|ref|ZP_13590168.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|419053701|ref|ZP_13600566.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|419059737|ref|ZP_13606535.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|419065783|ref|ZP_13612482.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|419072168|ref|ZP_13617765.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|419077975|ref|ZP_13623471.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|419083146|ref|ZP_13628587.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|419089130|ref|ZP_13634478.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|419094916|ref|ZP_13640190.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|419100733|ref|ZP_13645918.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|419101663|ref|ZP_13646838.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|419112709|ref|ZP_13657750.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|419117387|ref|ZP_13662394.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|419123336|ref|ZP_13668272.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|419128635|ref|ZP_13673503.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|419134045|ref|ZP_13678868.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|419139187|ref|ZP_13683976.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|419144930|ref|ZP_13689656.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|419150857|ref|ZP_13695502.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|419156337|ref|ZP_13700890.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|419161695|ref|ZP_13706184.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|419166788|ref|ZP_13711235.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|419172782|ref|ZP_13716653.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|419177507|ref|ZP_13721313.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|419183343|ref|ZP_13726948.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|419188957|ref|ZP_13732459.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|419193893|ref|ZP_13737331.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|419212347|ref|ZP_13755409.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|419218190|ref|ZP_13761179.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|419229300|ref|ZP_13772135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|419235104|ref|ZP_13777867.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|419240508|ref|ZP_13783209.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|419245923|ref|ZP_13788552.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|419251927|ref|ZP_13794490.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|419257379|ref|ZP_13799876.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|419263508|ref|ZP_13805912.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|419264798|ref|ZP_13807187.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|419270449|ref|ZP_13812783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|419286604|ref|ZP_13828763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|419292039|ref|ZP_13834121.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|419297319|ref|ZP_13839353.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|419308855|ref|ZP_13850743.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|419393861|ref|ZP_13934658.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|419399220|ref|ZP_13939979.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|419404466|ref|ZP_13945182.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|419409630|ref|ZP_13950311.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|419415188|ref|ZP_13955818.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|419812399|ref|ZP_14337266.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|419874689|ref|ZP_14396603.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|419879645|ref|ZP_14401076.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|419902626|ref|ZP_14421829.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|419905653|ref|ZP_14424609.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|420099093|ref|ZP_14610339.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|420110650|ref|ZP_14620605.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|420113527|ref|ZP_14623259.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|420119768|ref|ZP_14629022.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|420126752|ref|ZP_14635465.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|420131499|ref|ZP_14639935.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|420272370|ref|ZP_14774716.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|420277955|ref|ZP_14780233.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|420283156|ref|ZP_14785386.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|420284102|ref|ZP_14786323.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|420289859|ref|ZP_14792029.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|420300926|ref|ZP_14802968.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|420306852|ref|ZP_14808837.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|420312140|ref|ZP_14814065.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|420317897|ref|ZP_14819765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|420322644|ref|ZP_14824463.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|420333543|ref|ZP_14835179.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|420349685|ref|ZP_14851058.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|420361261|ref|ZP_14862203.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|420365796|ref|ZP_14866655.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|420382758|ref|ZP_14882188.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|421814877|ref|ZP_16250576.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|421820625|ref|ZP_16256107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421826602|ref|ZP_16261954.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|421833458|ref|ZP_16268735.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|423728051|ref|ZP_17701830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|424080156|ref|ZP_17817094.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|424086551|ref|ZP_17823020.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|424092965|ref|ZP_17828872.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|424099656|ref|ZP_17834892.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|424105849|ref|ZP_17840562.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|424112488|ref|ZP_17846698.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|424118422|ref|ZP_17852240.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|424124621|ref|ZP_17857901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|424130785|ref|ZP_17863671.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|424137098|ref|ZP_17869517.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|424143655|ref|ZP_17875490.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|424150024|ref|ZP_17881383.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|424163751|ref|ZP_17886802.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|424257401|ref|ZP_17892343.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|424336089|ref|ZP_17898279.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|424452358|ref|ZP_17903983.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|424458522|ref|ZP_17909602.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|424465052|ref|ZP_17915355.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|424471287|ref|ZP_17921068.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|424477774|ref|ZP_17927073.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|424483558|ref|ZP_17932522.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|424489753|ref|ZP_17938273.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|424496448|ref|ZP_17943963.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|424503074|ref|ZP_17949941.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|424509345|ref|ZP_17955696.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|424516755|ref|ZP_17961322.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|424522879|ref|ZP_17966967.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|424528750|ref|ZP_17972445.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|424534892|ref|ZP_17978224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|424540980|ref|ZP_17983908.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|424547130|ref|ZP_17989443.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|424553325|ref|ZP_17995135.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|424559526|ref|ZP_18000903.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|424565847|ref|ZP_18006833.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|424571976|ref|ZP_18012493.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|424578134|ref|ZP_18018151.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|424583956|ref|ZP_18023586.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|424746311|ref|ZP_18174557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424756582|ref|ZP_18184393.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425100630|ref|ZP_18503350.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|425106704|ref|ZP_18509003.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|425112706|ref|ZP_18514611.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|425117443|ref|ZP_18519216.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|425122162|ref|ZP_18523834.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|425128636|ref|ZP_18529790.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|425134402|ref|ZP_18535238.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|425140995|ref|ZP_18541361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|425146671|ref|ZP_18546648.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|425152786|ref|ZP_18552384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|425158685|ref|ZP_18557932.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|425165005|ref|ZP_18563876.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|425170752|ref|ZP_18569210.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|425176796|ref|ZP_18574900.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|425182855|ref|ZP_18580536.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|425189156|ref|ZP_18586411.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|425195883|ref|ZP_18592638.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|425202362|ref|ZP_18598555.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|425208739|ref|ZP_18604521.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|425214496|ref|ZP_18609883.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|425220623|ref|ZP_18615570.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|425227269|ref|ZP_18621720.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|425233426|ref|ZP_18627450.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|425239348|ref|ZP_18633053.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|425245582|ref|ZP_18638874.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|425251778|ref|ZP_18644706.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|425257577|ref|ZP_18650057.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|425263832|ref|ZP_18655808.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|425269824|ref|ZP_18661435.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|425275115|ref|ZP_18666494.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|425285691|ref|ZP_18676703.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|425291039|ref|ZP_18681846.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|425297302|ref|ZP_18687410.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|425313995|ref|ZP_18703147.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|425319977|ref|ZP_18708738.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|425326116|ref|ZP_18714427.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|425332427|ref|ZP_18720224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|425338604|ref|ZP_18725927.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|425344898|ref|ZP_18731771.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|425350737|ref|ZP_18737180.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|425357009|ref|ZP_18743055.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|425362958|ref|ZP_18748590.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|425369225|ref|ZP_18754286.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|425375530|ref|ZP_18760154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|425382165|ref|ZP_18766145.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|425388417|ref|ZP_18771960.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|425395144|ref|ZP_18778235.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|425401199|ref|ZP_18783889.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|425407294|ref|ZP_18789499.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|425413652|ref|ZP_18795398.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|425419968|ref|ZP_18801223.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|425431264|ref|ZP_18811857.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|428949672|ref|ZP_19021928.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|428955744|ref|ZP_19027518.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|428961768|ref|ZP_19033029.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|428968370|ref|ZP_19039058.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|428974146|ref|ZP_19044441.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|428980535|ref|ZP_19050328.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|428986311|ref|ZP_19055684.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|428992459|ref|ZP_19061431.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|428998356|ref|ZP_19066931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|429004744|ref|ZP_19072788.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|429010783|ref|ZP_19078163.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|429017247|ref|ZP_19084107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|429023086|ref|ZP_19089586.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|429029170|ref|ZP_19095125.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|429035310|ref|ZP_19100818.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|429041420|ref|ZP_19106492.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|429047246|ref|ZP_19111942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|429052597|ref|ZP_19117153.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|429058154|ref|ZP_19122396.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|429063674|ref|ZP_19127630.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|429069876|ref|ZP_19133298.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|429075653|ref|ZP_19138895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|429080853|ref|ZP_19143978.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429829081|ref|ZP_19360059.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429835546|ref|ZP_19365772.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443619893|ref|YP_007383749.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444927567|ref|ZP_21246820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444933176|ref|ZP_21252172.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444938639|ref|ZP_21257361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444944245|ref|ZP_21262719.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444949646|ref|ZP_21267927.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444955383|ref|ZP_21273438.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444960749|ref|ZP_21278560.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444965954|ref|ZP_21283505.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444972010|ref|ZP_21289338.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444977298|ref|ZP_21294364.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444982637|ref|ZP_21299533.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444988047|ref|ZP_21304814.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444993429|ref|ZP_21310059.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444998607|ref|ZP_21315096.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|445004152|ref|ZP_21320531.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|445009571|ref|ZP_21325789.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|445014650|ref|ZP_21330744.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|445020572|ref|ZP_21336526.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|445025933|ref|ZP_21341746.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|445031388|ref|ZP_21347043.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|445036812|ref|ZP_21352329.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|445042490|ref|ZP_21357851.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|445047694|ref|ZP_21362931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|445061301|ref|ZP_21373807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|450226865|ref|ZP_21897539.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|450252923|ref|ZP_21902297.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
gi|54041622|sp|P15043.5|RECQ_ECOLI RecName: Full=ATP-dependent DNA helicase RecQ
gi|48994977|gb|AAT48221.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|73857811|gb|AAZ90518.1| ATP-dependent DNA helicase [Shigella sonnei Ss046]
gi|85676229|dbj|BAE77479.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
W3110]
gi|157068978|gb|ABV08233.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|169891138|gb|ACB04845.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
DH10B]
gi|187431186|gb|ACD10460.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188490139|gb|EDU65242.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218354275|emb|CAV00962.1| ATP-dependent DNA helicase [Escherichia coli 55989]
gi|218371471|emb|CAR19306.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
gi|222035520|emb|CAP78265.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238860042|gb|ACR62040.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
gi|254595220|gb|ACT74581.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|257756421|dbj|BAI27923.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|284923930|emb|CBG37029.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|291321518|gb|EFE60956.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|294490610|gb|ADE89366.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|307555948|gb|ADN48723.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|315618731|gb|EFU99316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|323155231|gb|EFZ41415.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|323167577|gb|EFZ53283.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|323173439|gb|EFZ59068.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|332084978|gb|EGI90160.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|332345801|gb|AEE59135.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|332996969|gb|EGK16587.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|335573445|gb|EGM59800.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|339417552|gb|AEJ59224.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|340731834|gb|EGR60973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|340737771|gb|EGR72025.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|342362570|gb|EGU26687.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|344192682|gb|EGV46771.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|345333780|gb|EGW66227.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|345357660|gb|EGW89852.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|345369561|gb|EGX01544.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|345369710|gb|EGX01692.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|345384846|gb|EGX14704.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|345389797|gb|EGX19598.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|359333954|dbj|BAL40401.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MDS42]
gi|374361266|gb|AEZ42973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|377889383|gb|EHU53847.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|377900947|gb|EHU65271.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|377901914|gb|EHU66224.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|377903769|gb|EHU68059.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|377906294|gb|EHU70540.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|377916995|gb|EHU81064.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|377923006|gb|EHU86977.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|377926673|gb|EHU90603.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|377937309|gb|EHV01090.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|377937816|gb|EHV01589.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|377952265|gb|EHV15861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|377957081|gb|EHV20618.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|377957368|gb|EHV20903.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|377960982|gb|EHV24457.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|377969378|gb|EHV32756.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|377970401|gb|EHV33763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|377980238|gb|EHV43504.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|377988783|gb|EHV51958.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|377989115|gb|EHV52284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|377992641|gb|EHV55787.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|378003621|gb|EHV66662.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|378006269|gb|EHV69255.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|378010076|gb|EHV73023.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|378020960|gb|EHV83688.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|378023963|gb|EHV86628.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|378028415|gb|EHV91033.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|378035128|gb|EHV97690.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|378048184|gb|EHW10539.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|378057740|gb|EHW19963.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|378068432|gb|EHW30533.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|378073450|gb|EHW35501.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|378078658|gb|EHW40639.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|378086522|gb|EHW48397.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|378088985|gb|EHW50834.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|378096895|gb|EHW58661.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|378102153|gb|EHW63835.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|378119748|gb|EHW81237.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|378121916|gb|EHW83364.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|378124653|gb|EHW86058.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|378125192|gb|EHW86594.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|378138180|gb|EHW99439.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|378144053|gb|EHX05229.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|378233768|gb|EHX93852.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|378239942|gb|EHX99919.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|378242825|gb|EHY02776.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|378250902|gb|EHY10804.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|378255628|gb|EHY15485.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|385154769|gb|EIF16778.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|388350582|gb|EIL15941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|388370946|gb|EIL34439.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|388373611|gb|EIL36859.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|388380812|gb|EIL43394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|390637133|gb|EIN16689.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|390637513|gb|EIN17059.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|390638307|gb|EIN17820.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|390655763|gb|EIN33679.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|390656665|gb|EIN34525.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|390659431|gb|EIN37196.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|390673956|gb|EIN50168.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|390677280|gb|EIN53339.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|390680714|gb|EIN56541.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|390691815|gb|EIN66538.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|390696174|gb|EIN70668.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|390697410|gb|EIN71830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|390711245|gb|EIN84228.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|390717538|gb|EIN90322.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|390718182|gb|EIN90940.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|390724300|gb|EIN96860.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|390736865|gb|EIO08185.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|390737487|gb|EIO08782.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|390741100|gb|EIO12195.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|390755766|gb|EIO25297.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|390758421|gb|EIO27875.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|390761852|gb|EIO31126.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|390764847|gb|EIO34042.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|390779055|gb|EIO46792.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|390786025|gb|EIO53561.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|390796590|gb|EIO63861.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|390799973|gb|EIO67092.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|390803163|gb|EIO70187.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|390804554|gb|EIO71520.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|390813588|gb|EIO80198.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|390821916|gb|EIO88072.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|390822385|gb|EIO88509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|390827531|gb|EIO93291.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|390840654|gb|EIP04669.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|390842695|gb|EIP06532.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|390847735|gb|EIP11259.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|390858215|gb|EIP20623.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|390862503|gb|EIP24686.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|390866548|gb|EIP28505.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|390874830|gb|EIP35918.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|390880191|gb|EIP40894.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|390890079|gb|EIP49765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|390891420|gb|EIP51051.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|390897852|gb|EIP57152.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|390905830|gb|EIP64755.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|390915489|gb|EIP74001.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|390915828|gb|EIP74328.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|391244920|gb|EIQ04196.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|391245159|gb|EIQ04433.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|391265596|gb|EIQ24564.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|391277456|gb|EIQ36200.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|391280624|gb|EIQ39291.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|391291630|gb|EIQ50010.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|391297979|gb|EIQ56004.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|394391248|gb|EJE68134.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|394402810|gb|EJE78500.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|394411617|gb|EJE85840.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|394423765|gb|EJE96980.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|394430839|gb|EJF03117.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|394431778|gb|EJF03941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|397894923|gb|EJL11359.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|406780153|gb|AFS59577.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056742|gb|AFS76793.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062864|gb|AFS83911.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061419|gb|EKG95938.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|408063920|gb|EKG98407.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|408065096|gb|EKG99572.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|408075235|gb|EKH09473.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|408080230|gb|EKH14314.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|408088415|gb|EKH21787.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|408094586|gb|EKH27603.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|408100770|gb|EKH33252.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|408105693|gb|EKH37840.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|408112433|gb|EKH44083.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|408118686|gb|EKH49805.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|408125003|gb|EKH55643.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|408134793|gb|EKH64609.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|408136802|gb|EKH66532.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|408143753|gb|EKH73027.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|408152134|gb|EKH80583.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|408157176|gb|EKH85342.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|408161220|gb|EKH89191.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|408170320|gb|EKH97532.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|408177268|gb|EKI04083.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|408180273|gb|EKI06898.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|408189631|gb|EKI15342.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|408197818|gb|EKI23069.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|408208793|gb|EKI33413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|408210666|gb|EKI35226.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|408223507|gb|EKI47276.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|408234880|gb|EKI57873.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|408237737|gb|EKI60587.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|408242911|gb|EKI65462.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|408251792|gb|EKI73509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|408256146|gb|EKI77539.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|408262801|gb|EKI83715.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|408271059|gb|EKI91208.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|408274185|gb|EKI94210.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|408282088|gb|EKJ01436.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|408288474|gb|EKJ07297.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|408293101|gb|EKJ11565.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|408303336|gb|EKJ20798.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|408304519|gb|EKJ21944.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|408315855|gb|EKJ32154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|408321307|gb|EKJ37346.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|408323034|gb|EKJ39003.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|408334009|gb|EKJ48917.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|408341948|gb|EKJ56384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|408544804|gb|EKK22250.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|408545335|gb|EKK22771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|408545856|gb|EKK23279.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|408563231|gb|EKK39371.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|408563445|gb|EKK39578.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|408564373|gb|EKK40483.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|408575663|gb|EKK51316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|408578574|gb|EKK54091.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|408588317|gb|EKK62900.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|408593310|gb|EKK67634.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|408599002|gb|EKK72934.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|408608686|gb|EKK82072.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421948409|gb|EKU05429.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421949627|gb|EKU06557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427201317|gb|EKV71710.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|427201385|gb|EKV71774.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|427204734|gb|EKV75006.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|427217586|gb|EKV86644.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|427221262|gb|EKV90123.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|427224265|gb|EKV92982.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|427237737|gb|EKW05261.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|427238116|gb|EKW05636.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|427242488|gb|EKW09895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|427255805|gb|EKW22046.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|427257425|gb|EKW23551.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|427257996|gb|EKW24110.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|427273047|gb|EKW37747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|427274751|gb|EKW39394.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|427280527|gb|EKW44885.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|427289002|gb|EKW52599.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|427295793|gb|EKW58875.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|427297634|gb|EKW60664.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|427307738|gb|EKW70166.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|427310706|gb|EKW72942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|427315500|gb|EKW77496.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|427324990|gb|EKW86445.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|427326402|gb|EKW87820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429250725|gb|EKY35374.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429251161|gb|EKY35784.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443424401|gb|AGC89305.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444534888|gb|ELV15066.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444536334|gb|ELV16361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444545204|gb|ELV24138.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444554349|gb|ELV31919.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444554556|gb|ELV32113.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444559217|gb|ELV36456.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444568882|gb|ELV45531.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444572276|gb|ELV48715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444575846|gb|ELV52071.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444587827|gb|ELV63229.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444589282|gb|ELV64624.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444589460|gb|ELV64795.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444603190|gb|ELV77901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444603275|gb|ELV77985.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|444612464|gb|ELV86757.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|444618782|gb|ELV92849.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|444620257|gb|ELV94266.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|444626765|gb|ELW00555.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|444635256|gb|ELW08688.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|444637104|gb|ELW10480.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|444642183|gb|ELW15387.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|444651734|gb|ELW24530.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|444657008|gb|ELW29510.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|444666687|gb|ELW38747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|449313574|gb|EMD03779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|449314202|gb|EMD04376.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|147559|gb|AAA24517.1| recQ [Escherichia coli]
Length = 610
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|418259306|ref|ZP_12882257.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
gi|397894450|gb|EJL10892.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
Length = 609
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLAVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|408675008|ref|YP_006874756.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387856632|gb|AFK04729.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 715
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 222/344 (64%), Gaps = 19/344 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FR Q + I+ +++ +DC LMPTGGGKS+C+Q+PA+ PGI LV+SPL
Sbjct: 5 EVLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV LK GI FL+ST + + I ED +G SL+LLY++PE + ++
Sbjct: 65 IALMQDQVQALKSNGIPAAFLNSTLSTIEQRTIEEDCKNG--SLKLLYISPEKLFSNNYL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+K ++ +N +AIDE+HC+S+WGHDFRP Y +L +L++ P+VP++ALTATA
Sbjct: 123 GFIKTLN----VNQIAIDESHCVSTWGHDFRPEYIQLKALKDTFPNVPMVALTATADRVT 178
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV-----RYKDLLDDAYADLCSVLKANGDTCAI 262
+KD++ L + L+ SSF+RPNL V R K + + + + I
Sbjct: 179 RKDILNQLGIPEALIFISSFDRPNLNLRVLPGRNRLKVIHE--------FIAKRTNQSGI 230
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R ++++ L GI YHAGL+ + R+ V D +I QV+VAT+AFGMGI
Sbjct: 231 IYCLSRKNTEDVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMGI 290
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
D+ +VR V H+++P ++E+FYQE GRAGRD + S +LL+Y D
Sbjct: 291 DKSNVRFVIHYSLPSNVESFYQEIGRAGRDGMKSDTLLFYSFGD 334
>gi|375258339|ref|YP_005017509.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|402839822|ref|ZP_10888300.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
gi|423105828|ref|ZP_17093529.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|365907817|gb|AEX03270.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|376379689|gb|EHS92440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|402287439|gb|EJU35887.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
Length = 608
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|424818190|ref|ZP_18243341.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
gi|325499210|gb|EGC97069.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
Length = 609
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIINTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|255932597|ref|XP_002557855.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582474|emb|CAP80660.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1511
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 219/351 (62%), Gaps = 8/351 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PG 79
+ + K+L+ F FR QL+AI A L+G+D F LMPTGGGKS+CYQ+P++ G
Sbjct: 633 QEVRKVLKERFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVTGGRTTG 692
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL-DSGKPSLRLLYVTP 138
+ +V+SPL++LME+QV L++ I ++ + K+ I L ++ + +LY+TP
Sbjct: 693 VTIVISPLLSLMEDQVSHLRKLNIKAFMVNGDTNPEEKSWIMSQLSNAAGEGMEVLYITP 752
Query: 139 E-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
E L+ + + L+K+H R L + IDEAHC+S WGHDFRP Y++L +R P VP++
Sbjct: 753 EMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVRARFPGVPVM 812
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256
ALTATA V+ DVM +L + + V SFNRPNL YEVR K D+ A + + ++
Sbjct: 813 ALTATATENVKVDVMHNLKITDCEVFLQSFNRPNLTYEVRSKGKNDEVLASMAETITSSY 872
Query: 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ C I+YCL R TCD+++ L + AYHAG++ K +S W R ++VAT
Sbjct: 873 QNQCGIIYCLSRKTCDKVAEDLQKKYHLKALAYHAGMSAKVKSEAQRKWQMGRVHIIVAT 932
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD S LY+G D
Sbjct: 933 IAFGMGIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRSGCYLYFGYKD 983
>gi|432545657|ref|ZP_19782479.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|432551136|ref|ZP_19787884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|432624192|ref|ZP_19860204.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|432817612|ref|ZP_20051362.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
gi|431070550|gb|ELD78853.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|431075989|gb|ELD83505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|431155723|gb|ELE56469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|431360028|gb|ELG46649.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|432619136|ref|ZP_19855233.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE75]
gi|431150651|gb|ELE51701.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE75]
Length = 604
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 10 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 69
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 70 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 127
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 128 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 183
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 184 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 239 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 299 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 335
>gi|363748979|ref|XP_003644707.1| hypothetical protein Ecym_2138 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888340|gb|AET37890.1| Hypothetical protein Ecym_2138 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1394
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 227/353 (64%), Gaps = 12/353 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G +VVSPLI+
Sbjct: 626 FKLPNFRPNQLEAINATLGGQDVFVLMPTGGGKSLCYQLPAIVKSGNTSGTTIVVSPLIS 685
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMS 148
LM++QV L K I SS T + + + + +G L L+Y++PE+ A+ +
Sbjct: 686 LMQDQVEHLLAKNIKASMFSSKGTAEQRRQTFNLFINGL--LDLVYISPEMICASVQCKN 743
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++K++ L+ + +DEAHC+S+WGHDFRP Y++L + P++P++ALTATA+ +V+
Sbjct: 744 AIQKLYRDHKLSRIVVDEAHCVSNWGHDFRPDYKELKFFKEEYPNIPMMALTATASEQVR 803
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCL 266
D++ +L L+ P+ LK SFNR NL+Y+V K ++ ++C +K G T IVYC
Sbjct: 804 MDIIHNLQLRQPVFLKQSFNRTNLYYQVLRKS--KNSMDEICETIKTKFRGQT-GIVYCH 860
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ +C++ +A + G+ CA YHAG++ R V W S++ QV+ ATVAFGMGID+ D
Sbjct: 861 SKNSCEQTAATMVRSGVKCAYYHAGMDPDERLQVQQGWQSNKVQVICATVAFGMGIDKPD 920
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
VR V HF +P+++E +YQE+GRAGRD S ++YY D R ++ ++ K+++
Sbjct: 921 VRFVYHFTVPRTLEGYYQETGRAGRDGSYSHCIMYYSFRDVRTIQSMIQKDKN 973
>gi|82546173|ref|YP_410120.1| ATP-dependent DNA helicase RecQ [Shigella boydii Sb227]
gi|416295404|ref|ZP_11651155.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
gi|81247584|gb|ABB68292.1| ATP-dependent DNA helicase [Shigella boydii Sb227]
gi|320186210|gb|EFW60949.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|399018929|ref|ZP_10721080.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
gi|398098859|gb|EJL89138.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
Length = 614
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 156/356 (43%), Positives = 226/356 (63%), Gaps = 14/356 (3%)
Query: 20 LHEKEA-LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
+HE+++ + +L FG++ FR +Q D ++ V+ G D LMPTGGGKS+CYQIPAL +
Sbjct: 9 VHEQQSRALHILETVFGYSSFRGQQGDIVRHVVQGGDALVLMPTGGGKSLCYQIPALVRD 68
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLIALM++QV L E G+ FL+STQT +I + SG L +LYV P
Sbjct: 69 GVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTFDEAMQIERRVRSG--DLDVLYVAP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E TP + L+ H + L AIDEAHC+S WGHDFRP Y KLS L P+VP +A
Sbjct: 127 ERLMTPRCLELLEAAH----IALFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPNVPRIA 182
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NG 257
LTATA + +++++ L L++ SSF+RPN+ Y++ K + L +++ +
Sbjct: 183 LTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKA---NGRKQLLDFIESEHA 239
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D +VYCL R +E + +L GI+ YHAG++ R++ ++ K V+VAT+A
Sbjct: 240 DDAGVVYCLSRKKVEETAEFLKQSGINALPYHAGMDYAKRTANQARFLREDKIVMVATIA 299
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
FGMGID+ DVR V H ++PKS+E +YQE+GRAGRD LP+ + + YG+ D +RRM
Sbjct: 300 FGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGLPANAWMAYGLQDVVQQRRM 355
>gi|417840674|ref|ZP_12486783.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
gi|341950862|gb|EGT77444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M19501]
Length = 615
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 224/355 (63%), Gaps = 13/355 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ PD PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATRQDILSHLNLENPHKYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLCNKGVSAAAYHAGMETARRDRVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 355
>gi|15804414|ref|NP_290454.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EDL933]
gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
Sakai]
gi|26250563|ref|NP_756603.1| ATP-dependent DNA helicase RecQ [Escherichia coli CFT073]
gi|91213348|ref|YP_543334.1| ATP-dependent DNA helicase RecQ [Escherichia coli UTI89]
gi|117626081|ref|YP_859404.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O1]
gi|168750361|ref|ZP_02775383.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|168753724|ref|ZP_02778731.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|168763952|ref|ZP_02788959.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|168768108|ref|ZP_02793115.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|168775622|ref|ZP_02800629.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|168780726|ref|ZP_02805733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|168786665|ref|ZP_02811672.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|168801109|ref|ZP_02826116.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|193065720|ref|ZP_03046785.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|193068067|ref|ZP_03049032.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194434028|ref|ZP_03066298.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|195938114|ref|ZP_03083496.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4024]
gi|208806062|ref|ZP_03248399.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208812810|ref|ZP_03254139.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208821321|ref|ZP_03261641.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209400089|ref|YP_002273341.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|217325284|ref|ZP_03441368.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|227888592|ref|ZP_04006397.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|237702832|ref|ZP_04533313.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|261225598|ref|ZP_05939879.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255644|ref|ZP_05948177.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK966]
gi|291285239|ref|YP_003502057.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|300818704|ref|ZP_07098911.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300939956|ref|ZP_07154585.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300950413|ref|ZP_07164336.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300955172|ref|ZP_07167569.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300985659|ref|ZP_07177546.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|301029039|ref|ZP_07192192.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|301047295|ref|ZP_07194381.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|301328411|ref|ZP_07221497.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301646111|ref|ZP_07246011.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|306815139|ref|ZP_07449292.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|331644555|ref|ZP_08345675.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331655508|ref|ZP_08356501.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331665474|ref|ZP_08366373.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331675289|ref|ZP_08376040.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332282668|ref|ZP_08395081.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|386597646|ref|YP_006094046.1| RecQ familyATP-dependent DNA helicase [Escherichia coli DH1]
gi|386606401|ref|YP_006112701.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|386626719|ref|YP_006146447.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|386631763|ref|YP_006151483.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|386636683|ref|YP_006156402.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|387619114|ref|YP_006122136.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|387623474|ref|YP_006131102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|387885050|ref|YP_006315352.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|415875441|ref|ZP_11542196.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|416261809|ref|ZP_11640557.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|416284789|ref|ZP_11647410.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|416307593|ref|ZP_11654634.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|416319727|ref|ZP_11662279.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|416326935|ref|ZP_11667010.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|416778771|ref|ZP_11876102.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|416790129|ref|ZP_11880995.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|416801903|ref|ZP_11885883.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|416812763|ref|ZP_11890805.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97]
gi|416823216|ref|ZP_11895422.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|416833537|ref|ZP_11900417.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|417087782|ref|ZP_11954640.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|417125722|ref|ZP_11973683.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|417135031|ref|ZP_11979816.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|417156682|ref|ZP_11994306.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|417169247|ref|ZP_12001502.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|417249485|ref|ZP_12041269.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|417265179|ref|ZP_12052558.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|417273258|ref|ZP_12060605.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|417279255|ref|ZP_12066565.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|417293640|ref|ZP_12080919.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|417296259|ref|ZP_12083506.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|417868124|ref|ZP_12513155.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|418040283|ref|ZP_12678529.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|418960294|ref|ZP_13512185.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|419804829|ref|ZP_14329980.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|419926606|ref|ZP_14444357.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|419943310|ref|ZP_14459870.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|421777493|ref|ZP_16214088.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|422361452|ref|ZP_16442074.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|422364103|ref|ZP_16444631.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|422752068|ref|ZP_16805973.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|422757541|ref|ZP_16811359.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|422764373|ref|ZP_16818123.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|422773902|ref|ZP_16827583.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|422818975|ref|ZP_16867187.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|422836240|ref|ZP_16884288.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|422842112|ref|ZP_16890078.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|422963299|ref|ZP_16973143.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|422990089|ref|ZP_16980861.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|422996987|ref|ZP_16987749.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|423002081|ref|ZP_16992833.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|423005737|ref|ZP_16996482.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|423012298|ref|ZP_17003030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|423021529|ref|ZP_17012234.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|423026687|ref|ZP_17017381.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|423032514|ref|ZP_17023200.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|423035353|ref|ZP_17026030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040509|ref|ZP_17031178.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047194|ref|ZP_17037853.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055733|ref|ZP_17044539.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057736|ref|ZP_17046535.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703345|ref|ZP_17677777.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|427807018|ref|ZP_18974085.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|427811606|ref|ZP_18978671.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429721569|ref|ZP_19256483.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773463|ref|ZP_19305477.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429778828|ref|ZP_19310793.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782663|ref|ZP_19314587.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429788056|ref|ZP_19319942.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429794495|ref|ZP_19326335.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429800455|ref|ZP_19332243.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429804067|ref|ZP_19335823.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429808715|ref|ZP_19340430.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429814414|ref|ZP_19346084.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429819617|ref|ZP_19351246.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429905937|ref|ZP_19371912.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910070|ref|ZP_19376031.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915970|ref|ZP_19381915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921018|ref|ZP_19386944.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926826|ref|ZP_19392736.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930757|ref|ZP_19396656.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937299|ref|ZP_19403184.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942978|ref|ZP_19408849.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945657|ref|ZP_19411516.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953220|ref|ZP_19419064.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956566|ref|ZP_19422396.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432360276|ref|ZP_19603487.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|432365076|ref|ZP_19608229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|432367297|ref|ZP_19610409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|432383719|ref|ZP_19626643.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|432389627|ref|ZP_19632505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|432394491|ref|ZP_19637307.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|432414086|ref|ZP_19656738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|432419345|ref|ZP_19661934.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|432434048|ref|ZP_19676469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|432438779|ref|ZP_19681155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|432443352|ref|ZP_19685684.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|432448496|ref|ZP_19690791.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|432452089|ref|ZP_19694343.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|432458964|ref|ZP_19701137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|432483235|ref|ZP_19725182.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|432487578|ref|ZP_19729484.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|432493074|ref|ZP_19734902.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|432506714|ref|ZP_19748431.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|432516211|ref|ZP_19753425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|432526295|ref|ZP_19763406.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|432528681|ref|ZP_19765751.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|432571096|ref|ZP_19807600.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|432576067|ref|ZP_19812534.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|432578095|ref|ZP_19814540.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|432590276|ref|ZP_19826626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|432595035|ref|ZP_19831345.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|432600079|ref|ZP_19836347.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|432605259|ref|ZP_19841468.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|432613825|ref|ZP_19849981.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|432629445|ref|ZP_19865409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|432634727|ref|ZP_19870624.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|432648493|ref|ZP_19884277.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|432653476|ref|ZP_19889212.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|432658058|ref|ZP_19893754.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|432663070|ref|ZP_19898697.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|432672915|ref|ZP_19908432.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|432677001|ref|ZP_19912440.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|432687652|ref|ZP_19922939.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|432689149|ref|ZP_19924414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|432701337|ref|ZP_19936480.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|432706554|ref|ZP_19941647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|432739319|ref|ZP_19974046.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|432747796|ref|ZP_19982457.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|432752279|ref|ZP_19986855.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|432756779|ref|ZP_19991322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|432768201|ref|ZP_20002590.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|432780984|ref|ZP_20015199.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|432785808|ref|ZP_20019983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|432789848|ref|ZP_20023974.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|432795081|ref|ZP_20029152.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|432796592|ref|ZP_20030625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|432808068|ref|ZP_20041980.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|432818612|ref|ZP_20052333.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|432824744|ref|ZP_20058407.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|432847043|ref|ZP_20079554.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|432866699|ref|ZP_20089036.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|432878187|ref|ZP_20095636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|432907645|ref|ZP_20116028.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|432931567|ref|ZP_20131599.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|432940641|ref|ZP_20138542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|432943514|ref|ZP_20140349.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|432951080|ref|ZP_20144823.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|432964632|ref|ZP_20153702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|432974095|ref|ZP_20162937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|432976046|ref|ZP_20164877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|432987668|ref|ZP_20176378.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|432997605|ref|ZP_20186184.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|433002200|ref|ZP_20190717.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|433002724|ref|ZP_20191232.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|433010024|ref|ZP_20198434.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|433016140|ref|ZP_20204466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|433025731|ref|ZP_20213696.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|433035751|ref|ZP_20223437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|433040839|ref|ZP_20228423.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|433045355|ref|ZP_20232827.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|433050297|ref|ZP_20237614.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|433060346|ref|ZP_20247376.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|433065296|ref|ZP_20252196.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|433084749|ref|ZP_20271193.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|433089549|ref|ZP_20275906.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|433103420|ref|ZP_20289488.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|433117753|ref|ZP_20303531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|433127456|ref|ZP_20312995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|433132402|ref|ZP_20317821.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|433137074|ref|ZP_20322396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|433141529|ref|ZP_20326765.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|433146459|ref|ZP_20331588.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|433151482|ref|ZP_20336476.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|433156014|ref|ZP_20340937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|433165840|ref|ZP_20350564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|433170836|ref|ZP_20355450.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|433175714|ref|ZP_20360216.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|433190628|ref|ZP_20374713.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|433195880|ref|ZP_20379845.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|433200586|ref|ZP_20384466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|433209973|ref|ZP_20393634.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|433214852|ref|ZP_20398424.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|442591349|ref|ZP_21009834.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442603448|ref|ZP_21018338.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
gi|452967363|ref|ZP_21965590.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4009]
gi|12518696|gb|AAG59018.1|AE005613_11 ATP-dependent DNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|26110993|gb|AAN83177.1|AE016769_292 ATP-dependent DNA helicase recQ [Escherichia coli CFT073]
gi|13364228|dbj|BAB38175.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|91074922|gb|ABE09803.1| ATP-dependent DNA helicase [Escherichia coli UTI89]
gi|115515205|gb|ABJ03280.1| ATP-dependent DNA helicase [Escherichia coli APEC O1]
gi|187768838|gb|EDU32682.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|188015421|gb|EDU53543.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|189001596|gb|EDU70582.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|189358975|gb|EDU77394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|189362723|gb|EDU81142.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|189365963|gb|EDU84379.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|189373237|gb|EDU91653.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|189376685|gb|EDU95101.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|192926687|gb|EDV81316.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|192958687|gb|EDV89125.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194417686|gb|EDX33785.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|208725863|gb|EDZ75464.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208734087|gb|EDZ82774.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208741444|gb|EDZ89126.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209161489|gb|ACI38922.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|209753168|gb|ACI74891.1| threonine efflux protein [Escherichia coli]
gi|209753170|gb|ACI74892.1| threonine efflux protein [Escherichia coli]
gi|209753172|gb|ACI74893.1| threonine efflux protein [Escherichia coli]
gi|209753174|gb|ACI74894.1| threonine efflux protein [Escherichia coli]
gi|209753176|gb|ACI74895.1| threonine efflux protein [Escherichia coli]
gi|217321505|gb|EEC29929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|226903003|gb|EEH89262.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|227834431|gb|EEJ44897.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|260451335|gb|ACX41757.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli DH1]
gi|290765112|gb|ADD59073.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|299878002|gb|EFI86213.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|300300814|gb|EFJ57199.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|300317889|gb|EFJ67673.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300408043|gb|EFJ91581.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|300450259|gb|EFK13879.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300455218|gb|EFK18711.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300528670|gb|EFK49732.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300845161|gb|EFK72921.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301075637|gb|EFK90443.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|305851508|gb|EFM51962.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|307628885|gb|ADN73189.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|312948375|gb|ADR29202.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|315138398|dbj|BAJ45557.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|315284755|gb|EFU44200.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|315293200|gb|EFU52552.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|320176754|gb|EFW51788.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|320179831|gb|EFW54778.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|320191083|gb|EFW65733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|320639307|gb|EFX08929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|320644692|gb|EFX13742.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|320650017|gb|EFX18520.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|320655364|gb|EFX23306.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660989|gb|EFX28432.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|320666113|gb|EFX33127.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|323938957|gb|EGB35176.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|323949294|gb|EGB45184.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|323954029|gb|EGB49827.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|324115715|gb|EGC09650.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|326344280|gb|EGD68040.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|326347892|gb|EGD71606.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|331036227|gb|EGI08462.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331046829|gb|EGI18913.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331057372|gb|EGI29361.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331067575|gb|EGI38979.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332105020|gb|EGJ08366.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|341921413|gb|EGT71013.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|342929411|gb|EGU98133.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|349740455|gb|AEQ15161.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|354857604|gb|EHF18058.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|354861156|gb|EHF21596.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|354862964|gb|EHF23400.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|354870560|gb|EHF30963.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|354876413|gb|EHF36774.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|354885260|gb|EHF45564.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|354888660|gb|EHF48915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|354892140|gb|EHF52353.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|354904405|gb|EHF64498.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907666|gb|EHF67724.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910042|gb|EHF70071.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912556|gb|EHF72556.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920351|gb|EHF80286.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355349511|gb|EHF98716.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|355422662|gb|AER86859.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|355427582|gb|AER91778.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|371591795|gb|EHN80734.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|371602176|gb|EHN90887.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|371609589|gb|EHN98126.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|383476777|gb|EID68710.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|384376901|gb|EIE34801.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|384472213|gb|EIE56273.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|385537533|gb|EIF84404.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|385708484|gb|EIG45496.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|386145721|gb|EIG92178.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|386152885|gb|EIH04174.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|386165432|gb|EIH31952.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|386170387|gb|EIH42447.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|386219806|gb|EII36270.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|386221361|gb|EII43805.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|386234435|gb|EII66413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|386238032|gb|EII74972.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|386251828|gb|EIJ01520.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|386259703|gb|EIJ15177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|386798508|gb|AFJ31542.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|388409130|gb|EIL69452.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|388421322|gb|EIL80939.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|408457407|gb|EKJ81203.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|412965200|emb|CCK49130.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|412971785|emb|CCJ46450.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429355564|gb|EKY92252.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429355754|gb|EKY92439.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357134|gb|EKY93808.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429371198|gb|EKZ07757.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429371402|gb|EKZ07959.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429375432|gb|EKZ11967.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429387228|gb|EKZ23670.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429389790|gb|EKZ26209.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429390496|gb|EKZ26908.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429400930|gb|EKZ37241.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429401897|gb|EKZ38191.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404472|gb|EKZ40747.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412703|gb|EKZ48894.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415644|gb|EKZ51805.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422963|gb|EKZ59072.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427510|gb|EKZ63592.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429431815|gb|EKZ67858.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439320|gb|EKZ75307.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443687|gb|EKZ79637.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448312|gb|EKZ84227.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454076|gb|EKZ89941.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458539|gb|EKZ94363.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430873088|gb|ELB96667.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|430883034|gb|ELC06041.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|430890837|gb|ELC13397.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|430903003|gb|ELC24748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|430903107|gb|ELC24851.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|430913882|gb|ELC35001.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|430932536|gb|ELC52957.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|430935905|gb|ELC56200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|430949889|gb|ELC69284.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|430959658|gb|ELC77969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|430962773|gb|ELC80625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|430970881|gb|ELC87926.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|430977239|gb|ELC94090.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|430978984|gb|ELC95773.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|431003540|gb|ELD19023.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|431013410|gb|ELD27143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|431030698|gb|ELD43704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|431034609|gb|ELD46535.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|431037921|gb|ELD48891.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|431047355|gb|ELD57356.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|431059796|gb|ELD69143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|431096876|gb|ELE02331.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|431104206|gb|ELE08809.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|431111518|gb|ELE15417.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|431117383|gb|ELE20622.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|431125535|gb|ELE27937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|431127306|gb|ELE29608.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|431144281|gb|ELE45988.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|431146062|gb|ELE47661.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|431160135|gb|ELE60653.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|431175867|gb|ELE75854.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|431177503|gb|ELE77427.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|431186593|gb|ELE86133.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|431188169|gb|ELE87668.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|431196510|gb|ELE95436.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|431207204|gb|ELF05474.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|431209667|gb|ELF07738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|431218899|gb|ELF16324.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|431234396|gb|ELF29797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|431239716|gb|ELF34188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|431239876|gb|ELF34342.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|431278992|gb|ELF69963.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|431289696|gb|ELF80437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|431293209|gb|ELF83589.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|431299667|gb|ELF89238.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|431321465|gb|ELG09066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|431323834|gb|ELG11300.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|431325714|gb|ELG13095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|431335017|gb|ELG22161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|431335488|gb|ELG22626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|431347763|gb|ELG34641.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|431352550|gb|ELG39319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|431373433|gb|ELG59039.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|431377686|gb|ELG62812.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|431392085|gb|ELG75688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|431400822|gb|ELG84186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|431417427|gb|ELG99890.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|431427140|gb|ELH09183.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|431459357|gb|ELH39670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|431459691|gb|ELH39983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|431466733|gb|ELH46750.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|431467349|gb|ELH47359.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|431477546|gb|ELH57314.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|431478399|gb|ELH58147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|431485180|gb|ELH64844.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|431493841|gb|ELH73433.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|431501796|gb|ELH80772.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|431504472|gb|ELH83098.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|431520867|gb|ELH98186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|431521765|gb|ELH99004.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|431526226|gb|ELI02985.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|431530167|gb|ELI06852.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|431545604|gb|ELI20252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|431547922|gb|ELI22215.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|431551988|gb|ELI25951.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|431561551|gb|ELI34918.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|431565593|gb|ELI38672.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|431577598|gb|ELI50229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|431597335|gb|ELI67242.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|431600495|gb|ELI70165.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|431615751|gb|ELI84873.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|431630352|gb|ELI98689.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|431639691|gb|ELJ07541.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|431642027|gb|ELJ09753.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|431653007|gb|ELJ20124.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|431655382|gb|ELJ22415.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|431657099|gb|ELJ24067.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|431666796|gb|ELJ33421.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|431669744|gb|ELJ36113.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|431683122|gb|ELJ48761.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|431683735|gb|ELJ49363.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|431687667|gb|ELJ53211.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|431701585|gb|ELJ66500.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|431712921|gb|ELJ77188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|431716632|gb|ELJ80739.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|431727917|gb|ELJ91647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|431731295|gb|ELJ94801.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|441608587|emb|CCP95671.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441715872|emb|CCQ04315.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|449274903|gb|EMC83940.1| ATP-dependent DNA helicase Q1, partial [Columba livia]
Length = 656
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 225/363 (61%), Gaps = 11/363 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
+K+ P +EK + L+ F +FR QL+ + A ++G+D F +MPTGGGKS+CYQ+P
Sbjct: 64 NKKDFPWYEK--IKTALQGKFKLQKFRSLQLETVNAAMAGKDIFLVMPTGGGKSLCYQLP 121
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G LV+ PLI+LME+Q++ L++ GI+ L+++ + + ++ ++ + L+L
Sbjct: 122 AVCSDGFTLVICPLISLMEDQLMVLEQLGISAALLNASSSKEHVKWVHTEMLNRNSQLKL 181
Query: 134 LYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192
+YVTPE A + FMSKL+K + G L +A+DE HC S WGHDFRP Y+ L L+ P
Sbjct: 182 VYVTPEKIAKSKMFMSKLEKAYQAGRLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFP 241
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYA 247
+ P++ LTATA V KD + L +Q + +SFNRPNL+YEVR+K D ++D
Sbjct: 242 NAPLIGLTATATNHVLKDAQKILHVQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVK 301
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+ K IVYC + ++++ L GI YHA ++ K ++ V W ++
Sbjct: 302 TINGRYKG---LSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAAN 358
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 359 QIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDI 418
Query: 368 RRM 370
R+
Sbjct: 419 FRI 421
>gi|30064881|ref|NP_839052.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|56480445|ref|NP_709628.2| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 301]
gi|384545430|ref|YP_005729494.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
gi|30043141|gb|AAP18863.1| ATP-dependent DNA helicase [Shigella flexneri 2a str. 2457T]
gi|56383996|gb|AAN45335.2| ATP-dependent DNA helicase [Shigella flexneri 2a str. 301]
gi|281603217|gb|ADA76201.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|387120628|ref|YP_006286511.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429733941|ref|ZP_19267991.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
gi|385875120|gb|AFI86679.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429153932|gb|EKX96695.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans Y4]
Length = 629
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I AVL+G+DC +M TG GKS+CYQIPAL G LVVSPLI+LM++
Sbjct: 39 FGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLISLMKD 98
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A ++L+STQT + + ++ SG+ L+LLY++PE T F +
Sbjct: 99 QVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQ--LKLLYLSPEKVMTSSFFQFI--- 153
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+VPI+ALTATA Q+D+++
Sbjct: 154 -SLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQ 212
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L P SF+RPN+ Y + ++K + LC + A IVYC R
Sbjct: 213 NLRLNRPHFYVGSFDRPNIRYTLVEKFKPM-----EQLCRFVLAQKGKSGIVYCNSRNKV 267
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+ ++ L G+ AAYHAG+ + R V D+ QVVVAT+AFGMGI++ +VR V
Sbjct: 268 ERIAETLYNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPAD 362
>gi|110807486|ref|YP_691006.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5 str. 8401]
gi|415859116|ref|ZP_11533441.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|417704375|ref|ZP_12353472.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|417725388|ref|ZP_12374173.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|417730594|ref|ZP_12379278.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|417735693|ref|ZP_12384331.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|417740471|ref|ZP_12389038.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|417745522|ref|ZP_12394040.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|420344000|ref|ZP_14845461.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
gi|424839868|ref|ZP_18264505.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|110617034|gb|ABF05701.1| ATP-dependent DNA helicase [Shigella flexneri 5 str. 8401]
gi|313647133|gb|EFS11588.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|332750946|gb|EGJ81351.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 4343-70]
gi|332751036|gb|EGJ81440.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-671]
gi|332752274|gb|EGJ82665.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2747-71]
gi|332764332|gb|EGJ94567.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2930-71]
gi|332998187|gb|EGK17790.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-218]
gi|333013511|gb|EGK32880.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-304]
gi|383468920|gb|EID63941.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 5a str. M90T]
gi|391262699|gb|EIQ21714.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-404]
Length = 609
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|416062304|ref|ZP_11581397.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069431|ref|ZP_11583273.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347997266|gb|EGY38280.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348000045|gb|EGY40845.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 629
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I AVL+G+DC +M TG GKS+CYQIPAL G LVVSPLI+LM++
Sbjct: 39 FGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLISLMKD 98
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A ++L+STQT + + ++ SG+ L+LLY++PE T F +
Sbjct: 99 QVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQ--LKLLYLSPEKVMTSSFFQFI--- 153
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+VPI+ALTATA Q+D+++
Sbjct: 154 -SLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQ 212
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L P SF+RPN+ Y + ++K + LC + A IVYC R
Sbjct: 213 NLRLNRPHFYVGSFDRPNIRYTLVEKFKPM-----EQLCRFVLAQKGKSGIVYCNSRNKV 267
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+ ++ L G+ AAYHAG+ + R V D+ QVVVAT+AFGMGI++ +VR V
Sbjct: 268 ERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPAD 362
>gi|347536771|ref|YP_004844196.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529929|emb|CCB69959.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium branchiophilum
FL-15]
Length = 731
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 225/355 (63%), Gaps = 19/355 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I+++L+ + F +MPTGGGKS+CYQ+PAL G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVIRSLLAKNNTFVIMPTGGGKSLCYQLPALMLEGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
IALM+NQV ++ E G+A L+ T+ QVK+ D+ +GK +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSEVGVAHVLNSSLNKTEIAQVKS----DIVAGKT--KLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
++S L+ + L+ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LT
Sbjct: 124 LTKEEYVSFLQTVP----LSFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLSDVPIIGLT 179
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNLFYEVR K + +D+ +K N
Sbjct: 180 ATATPKVQEDILKNLDMPDAKTFKASFNRPNLFYEVRTK--TKNIESDIIRFIKQNKGKS 237
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R + ++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGM
Sbjct: 238 GIIYCLSRKKVESIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGM 297
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H +IPKS+E++YQE+GR GRD L YY D ++E L+
Sbjct: 298 GIDKPDVRFVIHHDIPKSLESYYQETGRGGRDGGEGHCLAYYSYKDVEKLEKFLT 352
>gi|300904077|ref|ZP_07121957.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|301303719|ref|ZP_07209840.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|415865367|ref|ZP_11538229.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
gi|300403957|gb|EFJ87495.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|300841019|gb|EFK68779.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|315254188|gb|EFU34156.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFY 342
>gi|294673710|ref|YP_003574326.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
gi|294473219|gb|ADE82608.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
Length = 607
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 155/340 (45%), Positives = 220/340 (64%), Gaps = 11/340 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG++ FR Q + I+ V++G D LMPTGGGKS+CYQIPALA PGI +V+SPLI
Sbjct: 6 ILRQYFGYSSFRQNQEEIIRHVIAGNDALVLMPTGGGKSICYQIPALALPGITIVISPLI 65
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
+LM++QV L+ GI E L+S + T I +G+ ++LLY++PE L F
Sbjct: 66 SLMKDQVETLRSNGIEAEALNSGNDPTLDTVIRRKCLAGQ--IKLLYISPEKLLAEMDYF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M L+ ++L AIDEAHCIS WGHDFRP Y +L LR P+VP++ALTATA
Sbjct: 124 MQHLQ-------ISLFAIDEAHCISHWGHDFRPEYTQLGVLREKFPNVPMMALTATADKI 176
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D++ L L+N SSF+RPNL V+ + + + +KA + I+YCL
Sbjct: 177 TRQDILTQLKLRNAREFVSSFDRPNLSLSVKRGYKSAEKMHFILNFIKARPNDAGIIYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T ++++A L GI+ AAYHAGL+ RS + + + + VV AT+AFGMGID+ +
Sbjct: 237 SRKTTEKVAADLRKKGINAAAYHAGLSSLERSQTQEQFKNDQLLVVCATIAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+N+PKS+E+FYQE GRAGRD P+ ++L+Y + D
Sbjct: 297 VRWVIHYNMPKSIESFYQEIGRAGRDGAPADTVLFYSLAD 336
>gi|218550953|ref|YP_002384744.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ATCC 35469]
gi|416900390|ref|ZP_11929665.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|417117601|ref|ZP_11968462.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|422803414|ref|ZP_16851902.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|422808185|ref|ZP_16856611.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|450195654|ref|ZP_21892608.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
gi|218358494|emb|CAQ91141.1| ATP-dependent DNA helicase [Escherichia fergusonii ATCC 35469]
gi|323964066|gb|EGB59556.1| ATP-dependent DNA helicase RecQ [Escherichia coli M863]
gi|324111045|gb|EGC05032.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii B253]
gi|327250673|gb|EGE62379.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_7v]
gi|386140145|gb|EIG81300.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1.2741]
gi|449316195|gb|EMD06316.1| ATP-dependent DNA helicase RecQ [Escherichia coli SEPT362]
Length = 609
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 231/367 (62%), Gaps = 16/367 (4%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTADFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPLVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L+ G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQ 383
++ Q
Sbjct: 354 SEPGPQQ 360
>gi|46107336|ref|XP_380727.1| hypothetical protein FG00551.1 [Gibberella zeae PH-1]
Length = 1672
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 222/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 822 RMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTRGVTIV 881
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ + P L LLYVTPE+
Sbjct: 882 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNERSPEHFLELLYVTPEMV 941
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + L+ +H +G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 942 SKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVRQKYPGVPVMALT 1001
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + + SFNRPNL+YEVR K + + S++++N +
Sbjct: 1002 ATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEKTIESIASLIQSNYANK 1061
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R + ++++ LS GI+ YHAG + + + V + W + +VVVAT+AFG
Sbjct: 1062 SGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQRGQVKVVVATIAFG 1121
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H IPKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1122 MGIDKPDVRFVIHHGIPKSLEGYYQETGRAGRDGNPSDCILFYGKADIRVLKKLIADGDG 1181
Query: 380 KNSQ 383
+ Q
Sbjct: 1182 SHEQ 1185
>gi|432566205|ref|ZP_19802760.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
gi|431089461|gb|ELD95275.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
Length = 611
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVIHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|355672902|ref|ZP_09058623.1| hypothetical protein HMPREF9469_01660 [Clostridium citroniae
WAL-17108]
gi|354814929|gb|EHE99527.1| hypothetical protein HMPREF9469_01660 [Clostridium citroniae
WAL-17108]
Length = 787
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 226/363 (62%), Gaps = 10/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FR+ Q I +L+GRD F +MPTG GKS+C+QIPAL GI LV+SPL
Sbjct: 5 QVLKQYFGYDTFREGQEALIDGILAGRDVFGIMPTGSGKSLCFQIPALMMEGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + G+ +L+S+ T K G+ ++YV PE T GF+
Sbjct: 65 ISLMKDQVSTLNQAGVHAAYLNSSLTAGQYYKALSLAREGR--YPIIYVAPERLETEGFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+H++ + +VA+DE+HC+S WG DFRPSY K+ LP P++ A TATA +
Sbjct: 123 DF--ALHAK--ITMVAVDESHCVSQWGQDFRPSYLKIVDFIKKLPKRPVVSAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V++D+++ L LQ+P+V+ + ++RPNL+ V+ D YA L + ++ + C I+YCL
Sbjct: 179 VREDIIDILMLQDPVVVTTGYDRPNLYLGVQSPK---DKYAALKNFVEIHPGQCGIIYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+S L A GIS YHAGL+DK R DD+I R QV+VAT AFGMGID+ +
Sbjct: 236 TRKLVEEVSDRLRADGISVTRYHAGLSDKERRQNQDDFIYDRCQVMVATNAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+EAFYQE GR RDQ P + +L+Y D + + NQ
Sbjct: 296 VRYVIHYNMPKSIEAFYQEIGRCSRDQEPGECILFYSGQDVVTNQLFIDNNQDNQELDPL 355
Query: 387 TRE 389
TR+
Sbjct: 356 TRQ 358
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/349 (43%), Positives = 216/349 (61%), Gaps = 10/349 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FGH FR Q + + L+GRD F L+PTGGGKS+CYQ+PA+ G+ +V+SPLIA
Sbjct: 13 LKKYFGHDTFRPLQAEIVADALAGRDVFALLPTGGGKSLCYQLPAVLSEGLTVVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL E GIA FL+S+ + + Y L +G ++LYV PE GF+
Sbjct: 73 LMKDQVDGLTENGIAATFLNSSLGKKDAAQRYAKLFAG--DYQVLYVAPERLMLGGFLED 130
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK + A+DEAHCIS WGHDFRP YR+L+ LR PD P +ALTATA +V+
Sbjct: 131 LKKWK----VCRFAVDEAHCISEWGHDFRPEYRQLAELRKRFPDTPFMALTATATDRVRG 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L +P +SFNRPNL Y + K + + + +K+ I+YC R
Sbjct: 187 DIVKQLQLHDPTDYVASFNRPNLAYRIEQKQAV---FRQILKFVKSRPFESGIIYCFSRK 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
++ + L G+ AYHAG+ R+ D +I +VV AT+AFGMGID+ +VR
Sbjct: 244 ATEQTADRLRQEGVEAIAYHAGMTPLQRAKNQDAFIRDEVKVVCATIAFGMGIDKPNVRY 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377
V H +IPK++E +YQE+GRAGRD LPS+ ++Y+ D +++ FI K
Sbjct: 304 VIHQDIPKNIEGYYQETGRAGRDGLPSECVMYFSPGDVAKQLNFIAEKE 352
>gi|420338400|ref|ZP_14839955.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
gi|391258280|gb|EIQ17384.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-315]
Length = 609
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQGEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|417684666|ref|ZP_12334002.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|420327851|ref|ZP_14829589.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|420355277|ref|ZP_14856349.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|421684822|ref|ZP_16124603.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
gi|332088521|gb|EGI93637.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|391245516|gb|EIQ04783.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|391273146|gb|EIQ31974.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|404335343|gb|EJZ61813.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
Length = 609
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|190150443|ref|YP_001968968.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263787|ref|ZP_07545393.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915574|gb|ACE61826.1| ATP-dependent DNA helicase RecQ [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870908|gb|EFN02646.1| ATP-dependent DNA helicase recQ [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 602
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 219/333 (65%), Gaps = 9/333 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQ + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQIFEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LR+ P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRDTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPVEQLAKFIS--KQQGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L++ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLASRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++P+S+E++YQE+GRAGRD LPS+++L+Y D
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPAD 339
>gi|407928616|gb|EKG21469.1| Helicase [Macrophomina phaseolina MS6]
Length = 492
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/389 (42%), Positives = 231/389 (59%), Gaps = 30/389 (7%)
Query: 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA 74
+K++P+ + + +K + FG FR Q + I A L D F T GKS+CYQ+PA
Sbjct: 10 RKSQPMIDIDFTLKRI---FGKKTFRPLQREVINAALDKHDIFLQAATSFGKSLCYQLPA 66
Query: 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
+ G+ +V+SPL+ALM NQV L+ I ++ST KT I EDL G P RLL
Sbjct: 67 VIDHGLTVVISPLLALMNNQVAALRAADIKVATINSTTPYSQKTAIMEDLQCGHPRTRLL 126
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
Y+TPE F L+ IH+ L +AIDEAHCIS WGHDFRPS++ LS ++ PDV
Sbjct: 127 YITPEYCQLDSFRRILRIIHTHRELARIAIDEAHCISEWGHDFRPSFKNLSFFKHEFPDV 186
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYEVRYKDLLDDAYAD--- 248
PI+ LTATA +V+ D++ +L L +P LK S +RPNL YEVR+K +D Y D
Sbjct: 187 PIICLTATATAQVRDDIVRTLAL-DPATLKLYTMSTSRPNLHYEVRFKSDEEDHYDDFVR 245
Query: 249 -LCSV-------------LKANGDT----CAIVYCLERTTCDELSAYLSAGGISCAAYHA 290
LC+V L+A+G IVY L R +C+ L+ L A GI YHA
Sbjct: 246 WLCAVQARRTADPERASALRASGKRPEALSGIVYTLFRRSCEGLAERLRASGIGARPYHA 305
Query: 291 GLNDKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 348
GL++ + + L W+++ ++VVAT AFGMGID++DVR V H+ +PKS E FYQE+GR
Sbjct: 306 GLSNAEKDAALSGWVANAPGYEIVVATTAFGMGIDKEDVRFVVHWELPKSFEGFYQEAGR 365
Query: 349 AGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
AGRD + +LYY +DR R +++++
Sbjct: 366 AGRDGKAAACILYYSREDRDRAAGMMARD 394
>gi|390941990|ref|YP_006405751.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390415418|gb|AFL82996.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 711
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/388 (40%), Positives = 235/388 (60%), Gaps = 17/388 (4%)
Query: 20 LHEKEALVK---LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+++ E++VK +L+ FG+++FR Q IQ+VLS +D LMPTGGGKS+CYQ+PA+
Sbjct: 1 MNQAESVVKSEGILKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMI 60
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ LV+SPLI+LM++QV L GI FL+S+Q+ + I + SGK ++LLY+
Sbjct: 61 FDGLTLVISPLISLMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGK--IKLLYI 118
Query: 137 TPELTATPGF--MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
PE + + LK ++ L+LVAIDEAHC+S WGHDFRP Y K+ LR P +
Sbjct: 119 APERLYRGDYPLIDFLKTVN----LSLVAIDEAHCVSQWGHDFRPEYLKIGELRKSFPQI 174
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
P +ALTATA +KD+ + L L+ P SSF+R N+ Y V K DA L L
Sbjct: 175 PFIALTATADKLTRKDIADKLGLKTPQWFISSFDRSNITYRVTAKR---DAMGKLLEFLD 231
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++YCL R +E ++ L A G+S YHAGL + R + +I +++VA
Sbjct: 232 FHKKDSGVIYCLSRKNVEETASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVA 291
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ +VR V H N+P+++E +YQE+GRAGRD LPS +LL+Y D + +L
Sbjct: 292 TIAFGMGIDKSNVRFVVHMNMPQNVEGYYQETGRAGRDGLPSDALLFYSGQDANTLGRML 351
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQV 402
+ ++Q F+ + + + F Q
Sbjct: 352 DRG---DNQEFAHVMQEKLEKMKSFCQT 376
>gi|352106026|ref|ZP_08961137.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
gi|350598118|gb|EHA14242.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
Length = 608
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/343 (45%), Positives = 213/343 (62%), Gaps = 9/343 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +K+L+ FG+ FR Q I+ V++G D LMPTGGGKS+CYQIPAL + G +VV
Sbjct: 8 AALKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVV 67
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+ +L+S+ +I L +G+ L LLYV PE ATP
Sbjct: 68 SPLIALMQDQVAALEQNGVRAAYLNSSLDYHEAVEIENRLRAGE--LDLLYVAPERLATP 125
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ + + + L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA
Sbjct: 126 ----RMQMLLEQNQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATAD 181
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIV 263
+ D+ME L LQ + S F+RPN+ Y + +A L ++ + D IV
Sbjct: 182 VPTRHDIMEHLQLQEAALYNSGFDRPNIRYHIAENQ--GNAKEQLLRFIREHHDGEAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +E +A+L G++ YHAGL + R ++ VVVAT+AFGMGID
Sbjct: 240 YCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQQHQTRFLREDGVVVVATIAFGMGID 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ DVR V H N+PKS+EA+YQE+GRAGRD LP+ + + YG+ D
Sbjct: 300 KPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQD 342
>gi|343497191|ref|ZP_08735268.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
gi|342819758|gb|EGU54595.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
Length = 612
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/347 (44%), Positives = 218/347 (62%), Gaps = 12/347 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
VK+L FG+ FR Q + IQ+ L G+D +MPTGGGKS+CYQIPAL K G+ LVVSP
Sbjct: 18 VKVLNEVFGYQSFRVGQEEVIQSSLEGKDSLVIMPTGGGKSLCYQIPALVKEGVTLVVSP 77
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV LK G+A E ++ST K+Y +++G+ L+L+YV+PE T F
Sbjct: 78 LISLMKDQVDQLKANGVAAECINSTMERDELIKVYNRMNAGQ--LKLVYVSPERVLTRDF 135
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M +L+ + L+++A+DEAHCIS WGHDFR Y L L+ P PI+ALTATA
Sbjct: 136 MERLEHLR----LSMIAVDEAHCISQWGHDFRREYAALGELKQRFPYAPIMALTATADEA 191
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+KD++ L L+ PL SF+RPN+ Y + K + + L C ++YC
Sbjct: 192 TRKDIVSRLHLEEPLEYLGSFDRPNIRYNLVEK---HKPVSQVIRFLATQQGQCGVIYCG 248
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + L+ L I A YHAG++ R+ V D + QVVVATVAFGMGI++ +
Sbjct: 249 SRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQDAFQKDDIQVVVATVAFGMGINKPN 308
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y D +RRM
Sbjct: 309 VRFVLHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWQRRM 355
>gi|340621987|ref|YP_004740439.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
gi|339902253|gb|AEK23332.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
Length = 729
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 227/361 (62%), Gaps = 17/361 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ +Q + +++V++ ++ F +MPTGGGKS+CYQ+PA+ G +
Sbjct: 5 KNDLQSALKHYFGFDTFKGQQEEIVRSVINRQNTFVIMPTGGGKSLCYQLPAMVSKGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ ++ ED+ S K +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSVAHVLNSSLNKGEIREVMEDIRSKKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPI 196
PE + + LK I ++ VA+DEAHCIS WGHDFRP YR + ++ + L + +P+
Sbjct: 121 PESLTKDEYANFLKTID----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIDRLGEGIPV 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ D++++L + V K+SFNRPNL+YEVR K + AD+ +K +
Sbjct: 177 VALTATATPKVQDDILKNLGMAEANVFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQH 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +ELS L GI+ YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEELSQTLQVNGITAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMVG 354
Query: 376 K 376
K
Sbjct: 355 K 355
>gi|388455906|ref|ZP_10138201.1| ATP-dependent DNA helicase RecQ [Fluoribacter dumoffii Tex-KL]
Length = 607
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/359 (42%), Positives = 218/359 (60%), Gaps = 10/359 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+ + + +L+ +FG FR Q D I V+ G+D LMPTGGGKS+CYQIPA+ +P
Sbjct: 7 PVTRNKNSLAVLKEYFGFDSFRTPQEDIINEVIEGKDVLVLMPTGGGKSLCYQIPAIVRP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G +VVSPLIALME+QV L+ +GI + +S+ + + K+ L + L LLY+ P
Sbjct: 67 GTGIVVSPLIALMEDQVTALRLQGIRAAYYNSSLSGEESKKVLMQLHHNE--LDLLYIAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ +LK+ H + L AIDEAHCIS WGHDFRP Y L L+ + P++PI+A
Sbjct: 125 ERLMSPSFLERLKECH----IALFAIDEAHCISQWGHDFRPEYAALGVLKTHFPNIPIIA 180
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + ++D+++ L P +SFNRPN+ Y+V +K +A L L
Sbjct: 181 LTATADKQTRQDIIDKLHY-TPRKYIASFNRPNIHYKVVHKT---NAVKQLGQFLHTVER 236
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC RT + L+ L AYHAGL K R V + R +VVAT+AF
Sbjct: 237 QSGIIYCSTRTAVETLAQKLQEMDFKARAYHAGLPHKERREVQGLFRHDRIDIVVATIAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
GMGID+ +VR V H+++PK++E +YQE+GRAGRD LP+++LL Y D R+ + N
Sbjct: 297 GMGIDKSNVRFVVHYDLPKNIEGYYQETGRAGRDGLPAQALLLYDAADSARLRSWIHNN 355
>gi|418465350|ref|ZP_13036287.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756282|gb|EHK90441.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 629
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I AVL+G+DC +M TG GKS+CYQIPAL G LVVSPLI+LM++
Sbjct: 39 FGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLISLMKD 98
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A ++L+STQT + + ++ SG+ L+LLY++PE T F +
Sbjct: 99 QVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQ--LKLLYLSPEKVMTSSFFQFI--- 153
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+VPI+ALTATA Q+D+++
Sbjct: 154 -SLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQ 212
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L P SF+RPN+ Y + ++K + LC + A IVYC R
Sbjct: 213 NLRLNRPHFYVGSFDRPNIRYTLVEKFKPM-----EQLCRFVLAQKGKSGIVYCNSRNKV 267
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+ ++ L G+ AAYHAG+ + R V D+ QVVVAT+AFGMGI++ +VR V
Sbjct: 268 ERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPAD 362
>gi|260949491|ref|XP_002619042.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
gi|238846614|gb|EEQ36078.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
Length = 1408
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 225/351 (64%), Gaps = 8/351 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
F FR QL+A+ A L+G+D F L+PTGGGKS+CYQ+PAL K G + +V+SPLI+
Sbjct: 668 FKLPDFRPNQLEAVVAALNGKDVFVLIPTGGGKSLCYQLPALVKGGKTRGVTIVISPLIS 727
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L+++ I +SS T + K +L SG+ L L+Y++PE+ + + +
Sbjct: 728 LMQDQVQHLRDRNINAAMISSRGTTEEKHAAIRELTSGQ--LDLVYLSPEMVNSSNMIQR 785
Query: 150 -LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L K++ +L V +DEAHC+SSWGHDFRP Y+ +S + P+VPI+ALTATA KV+
Sbjct: 786 VLSKLYESNMLARVVVDEAHCVSSWGHDFRPDYQGMSLFKEKFPEVPIMALTATANEKVR 845
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L ++N ++LK SFNR NLFYEVR K + + K G T I+YC +
Sbjct: 846 LDIVHHLRMKNLVLLKQSFNRTNLFYEVRNKPPNLYEWIRDYVMGKMAGKT-GIIYCHSK 904
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ + L+ GI C YHAG++ R V W ++ Q++ AT+AFGMGID+ DVR
Sbjct: 905 QSCETTAQKLNDWGIKCMYYHAGMDPNERFDVQTQWQHNKIQLICATIAFGMGIDKPDVR 964
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
V H IPKS+E +YQE+GRAGRD S+ +++Y D R ++ ++ ++++
Sbjct: 965 FVIHMYIPKSLEGYYQETGRAGRDGKESECIMFYSYKDARALQSLIQRDRN 1015
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A L+G+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----GLLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|333381389|ref|ZP_08473071.1| ATP-dependent DNA helicase RecQ [Dysgonomonas gadei ATCC BAA-286]
gi|332830359|gb|EGK02987.1| ATP-dependent DNA helicase RecQ [Dysgonomonas gadei ATCC BAA-286]
Length = 731
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 219/352 (62%), Gaps = 13/352 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ HFG +F+ Q IQ +L +D F LMPTGGGKS+CYQ+PAL G ++
Sbjct: 6 DKLTVALKKHFGFDKFKGNQEAIIQNLLDEKDTFVLMPTGGGKSLCYQLPALLMEGTAVI 65
Query: 84 VSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+SPLIALM+NQV ++ E G+A F++S+ ++ D+ SGK +LLYV PE
Sbjct: 66 ISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKAAIEQVKGDILSGKT--KLLYVAPE 122
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ L++I ++ AIDEAHCIS WGHDFRP YR++ + + PI+AL
Sbjct: 123 SLTKEENIDFLRQIK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIVTEIGKHPIIAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ D+ ++L + + V K+SFNR NLFYEVR K ++ D+ +K+ G
Sbjct: 179 TATATPKVQLDIQKNLGMVDADVFKASFNRENLFYEVRSK--TNNVDKDIIKYIKSQGHK 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R +E + L I+ YHAGL+ RS+ D ++ + V+VAT+AFG
Sbjct: 237 SGIIYCLSRKKVEEFAEILQTNNINALPYHAGLDANTRSANQDAFLMEQVDVIVATIAFG 296
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
MGID+ DVR V H+++PKS+E +YQE+GRAGRD K + +Y D +++E
Sbjct: 297 MGIDKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGKCIAFYSFKDLQKLE 348
>gi|392963657|ref|ZP_10329081.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387847620|emb|CCH51120.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 715
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 225/352 (63%), Gaps = 9/352 (2%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ ++G+ +FR Q D ++++L GRD LMPTGGGKS+C+QIPAL PGI +VVSPLIA
Sbjct: 21 LKRYYGYDRFRPMQEDIVRSILRGRDTLVLMPTGGGKSVCFQIPALMMPGICVVVSPLIA 80
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L GI F +STQ+ + + I +D GK ++LLYV+PE T F
Sbjct: 81 LMKDQVEALHMNGIPAAFYNSTQSGKEQRAIEDDCVKGK--IKLLYVSPEKMLTESFFVF 138
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK+I+ ++L AIDEAHCISSWGHDFRP Y +L L+ + P VP +ALTATA +
Sbjct: 139 LKRIN----ISLFAIDEAHCISSWGHDFRPEYTQLHVLKEHFPTVPTVALTATADKLTRN 194
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ + L + +P V +SFNRPNL +V + + +L+ DT I+YCL R
Sbjct: 195 DIAQRLGMNDPAVFIASFNRPNLSLKVLPGT---NRLPQIIKLLQQKPDTSGIIYCLSRK 251
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ + L+A L G A YHA ++ + R+ + ++ +++ AT+AFGMGID+ +VR
Sbjct: 252 STESLAAKLQEKGFKAAFYHAKMDPEDRAKTQEAFLRDDVRIMCATIAFGMGIDKSNVRW 311
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
V H+N+PK++E+FYQE GRAGRD ++++L+Y D + +LS++ N
Sbjct: 312 VIHYNLPKNIESFYQEIGRAGRDGAEAQTVLFYSFADVATYKDMLSESAPAN 363
>gi|331685543|ref|ZP_08386127.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
gi|331077244|gb|EGI48458.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
Length = 611
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|354604692|ref|ZP_09022681.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
gi|353347271|gb|EHB91547.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
Length = 730
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 161/356 (45%), Positives = 229/356 (64%), Gaps = 20/356 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG F+ Q + I+ VL+G+D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHER------LKEYFGFTSFKGNQEEVIRNVLAGKDTFVLMPTGGGKSLCYQLPALVMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +++SPLIALM+NQV ++ E GIA FL+S+ K+ D+ +GK +LLY
Sbjct: 63 VAIIISPLIALMKNQVDAMRTFSMEDGIA-HFLNSSLNKAAVAKVKSDVLAGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE +S L++I ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVSFLRQIK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIINDIGAAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNLFYEVR K +A ++ +K+
Sbjct: 176 LIALTATATPKVQMDIQKNLGMLDAAVFKSSFNRPNLFYEVRSKT---NATKEIIRYIKS 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L+A I A YHAG++ R++ D +++ + V+VAT
Sbjct: 233 NPGKSGIIYCLSRKKVEELAELLAANSIKVAPYHAGMDAVTRAANQDAFLNEKVDVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGGGHCLTFYSYKDIQKLE 348
>gi|432604655|ref|ZP_19840881.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
gi|431136589|gb|ELE38447.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE66]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|409401711|ref|ZP_11251398.1| ATP-dependent DNA helicase RecQ [Acidocella sp. MX-AZ02]
gi|409129597|gb|EKM99441.1| ATP-dependent DNA helicase RecQ [Acidocella sp. MX-AZ02]
Length = 609
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/346 (44%), Positives = 220/346 (63%), Gaps = 13/346 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL FG FR +Q + +Q V +G D LMPTGGGKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 16 LLHRVFGLPGFRGQQEEIVQHVCAGGDALVLMPTGGGKSLCYQLPALCREGVGIVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV L++ G+ L+S+ + ++ DL +G+ L+LLY PE P F+
Sbjct: 76 ALMRDQVAALRQLGVPAAALNSSLIAPERAQVRSDLRAGR--LKLLYAAPERLLMPDFLE 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + L+AIDEAHC+S WGHDFRP Y LS L P VP +ALTATA P+ +
Sbjct: 134 MMDGAR----IALIAIDEAHCVSQWGHDFRPEYLGLSQLAERFPGVPRMALTATADPQTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ + L L+ + SSF+RPN+ Y V K+ L + L+A+ IVYCL R
Sbjct: 190 QDIAQRLGLEEAPLFLSSFDRPNIRYAVLRKEA---PLRQLQTFLRAHEGESGIVYCLSR 246
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ-VVVATVAFGMGIDRKDV 327
+ ++ +A L+ GI YHAG+ + R++ D+++++ + V+VATVAFGMGID+ DV
Sbjct: 247 NSVEQTAAALNQHGIRALPYHAGMPAETRAANQDEFLTTEEGLVLVATVAFGMGIDKPDV 306
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
R V H ++P S+EA+YQE+GRAGRD LP+++LL YGM D RR M
Sbjct: 307 RFVVHLDLPSSLEAYYQETGRAGRDGLPAETLLLYGMQDLVLRRGM 352
>gi|340346831|ref|ZP_08669950.1| ATP-dependent helicase RecQ [Prevotella dentalis DSM 3688]
gi|433652062|ref|YP_007278441.1| ATP-dependent DNA helicase RecQ [Prevotella dentalis DSM 3688]
gi|339611048|gb|EGQ15888.1| ATP-dependent helicase RecQ [Prevotella dentalis DSM 3688]
gi|433302595|gb|AGB28411.1| ATP-dependent DNA helicase RecQ [Prevotella dentalis DSM 3688]
Length = 742
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 259/477 (54%), Gaps = 58/477 (12%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG F+ Q I+ +++G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LLEQLKHYFGFDAFKGDQEAIIRNLMAGNDTFVLMPTGGGKSLCYQLPSLIMDGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV GL E+ FL+S+ ++ +D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGLTEEDGVAHFLNSSLNRAAINQVEQDVHSGK--TKLLYVAPESLN 124
Query: 143 TP---GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS------SLRNYLPD 193
F + K ++ AIDEAHCIS WGHDFRP YR + + ++
Sbjct: 125 KEDNLAFFTSFK-------ISFYAIDEAHCISEWGHDFRPEYRNIRPTIDRIACEQHVDK 177
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP++ALTATA KV+ D+ +SL + + KSSFNRPNL+YEVR K +D + + L
Sbjct: 178 VPVIALTATATDKVRTDIKKSLGIMDAPDFKSSFNRPNLYYEVRPKVSEEDTDSQIIRFL 237
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ + IVYCL R +ELS L G A YHAGL+ + R+ DD++ V+V
Sbjct: 238 RQHEGKSGIVYCLSRKKVEELSKKLQLNGFKAAPYHAGLDTELRTKTQDDFLKEELDVIV 297
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 298 ATIAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDDGEGICIAFYSPKDLKKLEKF 357
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSL 433
+ +N+ + + + K+ ++ S V +RF
Sbjct: 358 M-ENKGEAEKEIGRQLLEETKAYAETS----VCRRRF----------------------- 389
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACKHPNL---LAKYLGELTSAVLQ-KNHFSQIFI 486
LL+Y ++ P C N CD CKHP L E+ SAV K +F Q +I
Sbjct: 390 -LLHY---FGEEYPKPDCGN-CDNCKHPQKPRDAQDALVEVLSAVRAVKENFDQPYI 441
>gi|328866871|gb|EGG15254.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
fasciculatum]
Length = 834
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/354 (43%), Positives = 220/354 (62%), Gaps = 4/354 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + R Q DAI A+L RD F +PTGGGKS+C+Q+PAL G+ +VVSPL+ALM +
Sbjct: 386 FGVGELRALQKDAINAILYRRDTFVSLPTGGGKSLCFQLPALIDAGLTVVVSPLLALMND 445
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+++GI L+S ++ +T+ E+L++ + S++LLYVTPE + F ++ +
Sbjct: 446 QVTKLRQRGIPAAVLNSGISVSERTRTMEELENPQGSIKLLYVTPERLVSEDFAKRMARW 505
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H +G L + IDEAHCIS WGHDFR YRKLSS R P VPI+ALTATA V+ D+
Sbjct: 506 HYQGRLRRLVIDEAHCISEWGHDFRSDYRKLSSFRKTFPHVPIVALTATATDYVEHDIKN 565
Query: 214 SLCLQNPLV--LKSSFNRPNLFYEVRYKDLLDDAYA-DLCSVLKANGDTCA-IVYCLERT 269
L + V ++ +F R NL Y VR K A D+ S +KA T + IVYC
Sbjct: 566 QLGISRDDVVNVRGTFQRNNLRYAVRDKPASPIGVAMDIESFIKARYPTSSGIVYCATSV 625
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+ L+++L G+S Y+A L+ R + D+WI + +V+ T AFGMGID+ D R
Sbjct: 626 ECENLASHLRDVGLSAHHYYASLSTPTRLEIQDNWIKGKIKVICTTTAFGMGIDKPDTRF 685
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
V H ++P+S+E++YQ +GRAGRD S S+LY+ D++RME ++ S Q
Sbjct: 686 VIHHSMPQSIESYYQHTGRAGRDGQLSDSILYFSDIDKKRMEKLMKPTTSTQDQ 739
>gi|375129367|ref|YP_004991462.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
gi|315178536|gb|ADT85450.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 214/334 (64%), Gaps = 9/334 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FRD Q + I++ ++GRD +MPTGGGKS+CYQIPALA+ G+ +V+SPLI
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK G+A E ++STQ+ + IY + SG+ L+LLYV+PE T F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQ--LKLLYVSPERVLTGEFIE 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P VPI+ALTATA +
Sbjct: 137 RLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFPQVPIMALTATADDATR 192
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L +P V SF+RPN+ Y + K + + L C I+YC R
Sbjct: 193 SDILSRLNLTDPHVYLGSFDRPNIRYTLMEK---HKPVSQVIRYLDTQKGHCGIIYCGSR 249
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ L I A YHAG++ R+ V + + Q+VVATVAFGMGI++ +VR
Sbjct: 250 KKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVR 309
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V HF+IP+++E++YQE GRAGRD LP+++++ Y
Sbjct: 310 FVVHFDIPRNIESYYQEPGRAGRDGLPAEAVMLY 343
>gi|260870546|ref|YP_003236948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|415821875|ref|ZP_11510656.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|417594293|ref|ZP_12244979.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|419199610|ref|ZP_13742897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|419206760|ref|ZP_13749897.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|419219119|ref|ZP_13762084.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|419892091|ref|ZP_14412124.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|419893745|ref|ZP_14413707.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|420088554|ref|ZP_14600425.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|420094057|ref|ZP_14605670.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|424768555|ref|ZP_18195825.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257766902|dbj|BAI38397.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H- str.
11128]
gi|323177836|gb|EFZ63420.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1180]
gi|345331400|gb|EGW63860.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2534-86]
gi|378039987|gb|EHW02463.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8B]
gi|378042931|gb|EHW05375.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8A]
gi|378074570|gb|EHW36605.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8E]
gi|388348402|gb|EIL14007.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9570]
gi|388366194|gb|EIL29940.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9574]
gi|394389845|gb|EJE66943.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9602]
gi|394397257|gb|EJE73536.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CVM9634]
gi|421945970|gb|EKU03140.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 609
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQVNGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|170769878|ref|ZP_02904331.1| ATP-dependent DNA helicase RecQ [Escherichia albertii TW07627]
gi|170121316|gb|EDS90247.1| ATP-dependent DNA helicase RecQ [Escherichia albertii TW07627]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + + +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----ALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|387614520|ref|YP_006117636.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
gi|309704256|emb|CBJ03604.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
Length = 609
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKPGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|417202238|ref|ZP_12018488.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|417217784|ref|ZP_12023658.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
gi|386187125|gb|EIH75948.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0522]
gi|386193223|gb|EIH87519.1| ATP-dependent DNA helicase RecQ [Escherichia coli JB1-95]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQVNGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|170680861|ref|YP_001746140.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
gi|170518579|gb|ACB16757.1| ATP-dependent DNA helicase RecQ [Escherichia coli SMS-3-5]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAVCLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|298490702|ref|YP_003720879.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
gi|298232620|gb|ADI63756.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
Length = 722
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 247/399 (61%), Gaps = 16/399 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEKALKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ I+ FL+S+ E + +GK +RLLY+ PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNFYKVRSREEAIMNGK--VRLLYIAPERLISDK 124
Query: 146 FMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + G+ N AIDEAHC+S WGHDFRP YR+L L+ PDV ALTATA
Sbjct: 125 FLPLLDVVKEKIGIANF-AIDEAHCVSEWGHDFRPEYRQLILLKKRYPDVTTTALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ AYA+L +++ N + I+Y
Sbjct: 184 DRVRVDIIQQLGLKQPSVHIASFNRHNLYYEVRSKN--QRAYAELLEIVRENKGS-GIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L I+ YHAGL+D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKIAALPYHAGLSDDERSKNQTRFIRDDIRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF++P+++E++YQESGRAGRD PS+ L++ D + +E+ S NQ + Q
Sbjct: 301 PDVRFVVHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFGDVKTIEW--SINQKTDLQE 358
Query: 385 FSTRERSSKKSI-----SDFSQVLDVA--GKRFSRVLGN 416
++ ++ I +D + + +A G+RF GN
Sbjct: 359 KLIAKQQLRQVIDYAEGTDCRRTIQLAYFGERFPANCGN 397
>gi|417142416|ref|ZP_11984991.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
gi|417310399|ref|ZP_12097213.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|338768042|gb|EGP22848.1| ATP-dependent DNA helicase recQ [Escherichia coli PCN033]
gi|386155440|gb|EIH11795.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0259]
Length = 611
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|255579679|ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis]
gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative [Ricinus communis]
Length = 1233
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/353 (42%), Positives = 220/353 (62%), Gaps = 8/353 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 455 FGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQD 514
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I+ +LS+ + +I +L S +LLYVTPE A + L+
Sbjct: 515 QIMHLLQANISAAYLSANMEWAEQQEILRELSSDYCKYKLLYVTPEKVAKSDVLLRNLES 574
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++RGLL + IDEAHC+S WGHDFRP Y++L L+ P+LALTATA V++DV+
Sbjct: 575 LNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVV 634
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L + ++ + SFNRPNL+Y V + K LDD + +K N D C I+YCL R
Sbjct: 635 QALGLVDCIIFRQSFNRPNLWYSVVPKTKKCLDD----IDKFIKENHFDECGIIYCLSRM 690
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 691 DCEKVAEKLQECGHKAAFYHGNMDAAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 750
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
V H ++PKS+E ++QE GRAGRD L S +LYY D R++ ++ + Q + S
Sbjct: 751 VIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMIVQGQIEQS 803
>gi|218556387|ref|YP_002389301.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI1]
gi|218363156|emb|CAR00797.1| ATP-dependent DNA helicase [Escherichia coli IAI1]
Length = 609
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTCEQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 230/367 (62%), Gaps = 16/367 (4%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTGDFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFRLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLILQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQ 383
++ Q
Sbjct: 354 SEPGPQQ 360
>gi|37927351|pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|238798601|ref|ZP_04642077.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
gi|238717557|gb|EEQ09397.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
Length = 610
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 160/382 (41%), Positives = 238/382 (62%), Gaps = 17/382 (4%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 RESLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + L+A+DEAHCIS WGHDFRP YR L L+ P++P++ALTA
Sbjct: 127 VMESFLDQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + +
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPA 357
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
Q ER ++ F++
Sbjct: 358 GAQQDI---ERHKLNAMGAFAE 376
>gi|443695320|gb|ELT96261.1| hypothetical protein CAPTEDRAFT_131881 [Capitella teleta]
Length = 570
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/397 (41%), Positives = 241/397 (60%), Gaps = 19/397 (4%)
Query: 1 MKKSPLAMQS-TSQTQK-----NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR 54
+K LA+QS T Q + +K L EK++ V FG + R QL + LS +
Sbjct: 58 IKAQTLALQSSTDQLDRQDHLWSKELSEKQSSV------FGISDLRPLQLSTMNLTLSNK 111
Query: 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM 114
+C +MPTGGGKS+C+Q+PAL G+ LV+SPL++LME+Q+ L+ I+ L+++ T
Sbjct: 112 NCILVMPTGGGKSLCFQLPALLSKGVTLVISPLVSLMEDQLFALENLNISAAMLNASSTK 171
Query: 115 QVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173
+ ++ ++ S K LRLLYVTPE L + FMS L+K++++ L AIDE HC S W
Sbjct: 172 EHVKFVHSEMTSTKSDLRLLYVTPEKLAKSKRFMSYLEKMYTQNRLARFAIDEVHCCSQW 231
Query: 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF 233
GHDFRP Y+ L L+ P PIL LTATA V DV + L + + ++LK+SFNR NLF
Sbjct: 232 GHDFRPDYKFLGILKRQFPKAPILGLTATATSSVLNDVKKILQIPDCVILKASFNRANLF 291
Query: 234 YEVRYKDLLDDAYA---DLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289
YEVR K +A+A ++ +++ D IVYCL + +E++ L + G++ A YH
Sbjct: 292 YEVRPKP--SNAHALVEEIVDLIQTRFRDQSGIVYCLTQKDSEEMARQLQSHGLTAACYH 349
Query: 290 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349
A ++ K RS W +++ QVVVAT+AFGMGID+ +VR V H I KSME +YQESGRA
Sbjct: 350 AQMDAKHRSLAHRKWTTNKIQVVVATIAFGMGIDKPNVRFVIHHTISKSMENYYQESGRA 409
Query: 350 GRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
GRD + +++ G D R ++ Q+ + +S
Sbjct: 410 GRDDQTAHCIVFRGFADLFRQSTMVFSEQTGQEKLYS 446
>gi|398799825|ref|ZP_10559106.1| ATP-dependent DNA helicase RecQ [Pantoea sp. GM01]
gi|398097370|gb|EJL87679.1| ATP-dependent DNA helicase RecQ [Pantoea sp. GM01]
Length = 608
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 218/335 (65%), Gaps = 9/335 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I+ L+GRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLQDTFGYQQFRPGQQNIIETALAGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQT + + +++ D SGK L+LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRSGK--LKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + + ++A+DEAHCIS WGHDFRP Y + LR + P +P++ALTATA
Sbjct: 133 DSLHQWNP----VMLAVDEAHCISQWGHDFRPEYGSIGQLRQHFPHLPVMALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ L + +PL+ SSF+RPN+ Y + K L ++ I+YC
Sbjct: 189 RNDIAHLLQMDDPLIQISSFDRPNIRYTLVEK---FKPTEQLLRYVQDQRGKSGIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +A L + G+S AYHAG++ R+SV + + Q+VVATVAFGMGI++ +V
Sbjct: 246 RAKVEDTAARLQSRGLSVGAYHAGIDSAQRASVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 340
>gi|302926382|ref|XP_003054285.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
gi|256735226|gb|EEU48572.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
Length = 1678
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 221/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 825 RMLKDRFRMKGFRHNQLEAINATLEGKDAFVLMPTGGGKSLCYQLPAVIKSGRTRGVTIV 884
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + Q K ++ D P + LLYVTPE+
Sbjct: 885 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAQYKRQVMSAFDERSPEHFIELLYVTPEMV 944
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +HS+G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 945 SKNVAFNNGMRTLHSKGKFARLVIDEAHCVSQWGHDFRPDYKTLGQVRQRYPGVPVMALT 1004
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N SFNRPNL+YEVR K D + S++++ +
Sbjct: 1005 ATATQNVIVDIRHNLGMDNCQTFCQSFNRPNLYYEVRPKTTNDKTIEAIASLVQSKYPNQ 1064
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ LS GI+ + YHA ++ + + V + W ++VVAT+AFG
Sbjct: 1065 SGIVYTISRKNAEKVAESLSQHGIAASHYHAHVDPQEKVEVQNAWQRGEIKIVVATIAFG 1124
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1125 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKQDIRVLKRLIADGDG 1184
Query: 380 KNSQ 383
+ Q
Sbjct: 1185 SHEQ 1188
>gi|229496706|ref|ZP_04390420.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
gi|229316603|gb|EEN82522.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
Length = 724
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 225/361 (62%), Gaps = 14/361 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L+ L+ HFG F++ Q + I A+L G+DCF LMPTGGGKSMCYQ+PAL G +++
Sbjct: 4 TLLAHLKEHFGFETFKNHQEEIICALLEGKDCFVLMPTGGGKSMCYQLPALISEGTAIII 63
Query: 85 SPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
SPLIALM+NQV L+ + + F SS + Q+ + +D +G+ +LLYVTPE
Sbjct: 64 SPLIALMKNQVDALRSYCNDDCVVHFFNSSLRKSQMDL-VRQDTLAGRT--KLLYVTPEC 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ L+ I ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALT
Sbjct: 121 LTKEENQAFLQSIS----ISFFAIDEAHCISEWGHDFRPEYRKIRPMIDVIGRRPIIALT 176
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKV+ D++ +L + + +SSFNRPNLFY + K+ +D ++ + +N
Sbjct: 177 ATATPKVEHDILRTLQIPQAHIFRSSFNRPNLFYSILPKN--EDVDRNIVRFVLSNPQKS 234
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC+ R+ + L GI YHAGL+ + R++ D ++S QV+VAT+AFGM
Sbjct: 235 GIVYCMSRSKVTTFAKILRINGIRALPYHAGLDAQERAANQDAFLSEECQVIVATIAFGM 294
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GID+ DVR V H+++PKS+E +YQE+GRAGRD + YY D +R+E F+ K+ S
Sbjct: 295 GIDKPDVRFVIHYDMPKSLEGYYQETGRAGRDGGEGVCIAYYSQSDMQRLEKFMQDKSNS 354
Query: 380 K 380
+
Sbjct: 355 E 355
>gi|393784306|ref|ZP_10372471.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392666082|gb|EIY59599.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 601
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 161/394 (40%), Positives = 237/394 (60%), Gaps = 11/394 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+++ L+ +FG+ FR Q + IQ +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MIQTLKTYFGYESFRPLQEEIIQNLLDRKDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + GK L+LLY++PE L
Sbjct: 61 PLISLMKDQVETLRANGIAAGALNSSNDETENANLRRACIEGK--LKLLYISPEKLITEI 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ L+ +H L+L AIDEAHCIS WGHDFRP Y ++ L P +PI+ALTATA
Sbjct: 119 DYL--LRDMH----LSLFAIDEAHCISQWGHDFRPEYAQMGILHQVFPHIPIIALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L L +P V SSF+RPNL V+ + + + + C I+Y
Sbjct: 173 KITREDIIRQLHLTDPKVFISSFDRPNLSLAVKRGYQQKEKSRTILEFIDRHAGECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++ L GI C YHAGL+ + R + DD+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTETVAQMLQKHGIRCGVYHAGLSTQQRDATQDDFINDRIQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSKN-QSKNS 382
+VR V H+N+PKS+E+FYQE GRAGRD +PS +LL+Y + D + +F N QS N
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLGDLILLTKFATESNQQSINL 352
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGN 416
+ ++ ++ +I +L G++ + GN
Sbjct: 353 EKLQRMQQYAEANICRRRILLSYFGEKVEKDCGN 386
>gi|415838403|ref|ZP_11520381.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|425280271|ref|ZP_18671483.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|425302722|ref|ZP_18692600.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
gi|323189754|gb|EFZ75033.1| ATP-dependent DNA helicase RecQ [Escherichia coli RN587/1]
gi|408197343|gb|EKI22606.1| ATP-dependent DNA helicase RecQ [Escherichia coli ARS4.2123]
gi|408210381|gb|EKI34946.1| ATP-dependent DNA helicase RecQ [Escherichia coli 07798]
Length = 609
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWDP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|330907668|ref|XP_003295890.1| hypothetical protein PTT_03629 [Pyrenophora teres f. teres 0-1]
gi|311332395|gb|EFQ96010.1| hypothetical protein PTT_03629 [Pyrenophora teres f. teres 0-1]
Length = 485
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 223/377 (59%), Gaps = 25/377 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F A FR Q + + A L G D F T GKS+CYQ+PA+ GI +V+SPL+A
Sbjct: 16 LRKVFKKASFRPLQREVVTATLEGEDVFLQAATSFGKSLCYQLPAVVGFGITIVISPLLA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQV ++ I E ++ST + +I DL G P RLLYVTPE F
Sbjct: 76 LMNNQVASMRNANIRVETINSTTPPADRNRILADLQCGHPLTRLLYVTPEFCQGDNFRKI 135
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ I+S+ L +A+DEAHC+S WGHDFRPS+++LS + PDVP++ LTATA +V+
Sbjct: 136 LRVIYSQRELARIAVDEAHCVSEWGHDFRPSFQQLSFFKTEFPDVPVICLTATATARVRD 195
Query: 210 DVMESLCL--QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------------ 255
D++++L L +N + + S +RPNL YEVR+K D Y + S LK+
Sbjct: 196 DIIKTLALDPKNLKMFRMSTSRPNLHYEVRFKSDDQDHYDNFISWLKSTHARRAADPERA 255
Query: 256 ---------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ + I+Y + R C+ L+A L A GI YHAGL+ R+ L W++
Sbjct: 256 SQLSTQKQRSDNVPGIIYTIFRKDCESLAARLRADGIGAKPYHAGLSVSERADALSGWVA 315
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
++ VVVAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD S +LYYG
Sbjct: 316 NKAGYDVVVATTAFGMGIDKENVRFVVHWQIPKSFEGFYQEAGRAGRDGKASLCILYYGR 375
Query: 365 DDRRRMEFILSKNQSKN 381
+DR R +++++ ++
Sbjct: 376 EDRDRAASMMARDAARQ 392
>gi|404377215|ref|ZP_10982353.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|422769226|ref|ZP_16822947.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
gi|226838725|gb|EEH70753.1| ATP-dependent DNA helicase recQ [Escherichia sp. 1_1_43]
gi|323934125|gb|EGB30560.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1520]
Length = 611
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKPGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|357383276|ref|YP_004898000.1| ATP-dependent DNA helicase RecQ [Pelagibacterium halotolerans B2]
gi|351591913|gb|AEQ50250.1| ATP-dependent DNA helicase RecQ [Pelagibacterium halotolerans B2]
Length = 629
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 225/370 (60%), Gaps = 14/370 (3%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
SP++M S + P + +LR FG FR +Q + ++ V++G D L PTG
Sbjct: 13 SPVSMSLFSNATASDPAPADG--LDILRSVFGLDAFRGQQQEVVEHVMAGGDAVVLFPTG 70
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GKS+CYQIPA+ +PG+ +++SPLIALM +QV LK+ G+ L+S+ T + + +
Sbjct: 71 AGKSLCYQIPAIGRPGVGVIISPLIALMRDQVEALKQAGVRAAALNSSLTPEENRNVRQA 130
Query: 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183
L G+ L LLYV PE A GF+ L + + L AIDEAHC+S WGHDFRP YR+
Sbjct: 131 LRDGQ--LDLLYVAPERLAATGFLDLLASVD----IGLFAIDEAHCVSQWGHDFRPEYRE 184
Query: 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243
L+ LR P VP +ALTATA P + D++E L L++ + SSF+RPN+ Y + +
Sbjct: 185 LAKLRELFPHVPRVALTATADPTTRADLIERLGLEDAQLFISSFDRPNIGYSIVERS--- 241
Query: 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
+A + L L + IVYCL R + ++ +L+ GI+ YHAGL+ R+ D
Sbjct: 242 NARSQLLDFLGRHKGESGIVYCLSRAKVEAVAEFLTEKGIAALPYHAGLDAGVRARNQDA 301
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
++ +VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD PS++ + YG
Sbjct: 302 FLKEDAVCLVATVAFGMGIDKPDVRYVAHMDLPSSIEAYYQETGRAGRDGQPSEAWMCYG 361
Query: 364 MDD---RRRM 370
+ D RRRM
Sbjct: 362 LSDVSQRRRM 371
>gi|62858709|ref|NP_001016316.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
gi|89266858|emb|CAJ83846.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
gi|213624210|gb|AAI70790.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
Length = 558
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 210/340 (61%), Gaps = 3/340 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR QL+ I A ++GRD F +MPTGGGKS+CYQ+PA+ G LV+ PL++LME+
Sbjct: 89 FQLRSFRSLQLETINATMAGRDVFLIMPTGGGKSLCYQLPAVCSDGFTLVICPLVSLMED 148
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L G++ L+++ + + ++ ++ + L+LLYVTPE A FMS+L+K
Sbjct: 149 QLMVLDRLGVSATSLNASSSKEHVKWVHGEMTNKNSRLKLLYVTPEKIAKSKLFMSRLEK 208
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ GLL VA+DE HC S WGHDFRP Y+ L L+ P+ P++ LTATA V KD
Sbjct: 209 AYQAGLLARVAVDEVHCCSQWGHDFRPDYKTLGILKRQFPNSPLIGLTATATTHVLKDAQ 268
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ LC+ PL +SFNRPNLFYEVR K D AD+ ++ + I+YC +
Sbjct: 269 KILCVPKPLTFTASFNRPNLFYEVRLKPSSSQDFIADIVKLINSRYRGQSGIIYCFSQKD 328
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+ ++ L GI YHA + + ++ V W ++ Q+VVATVAFGMGID+ DVR V
Sbjct: 329 SEHVTMSLQKLGIRAGTYHANMEPRDKTKVHTKWTANEIQIVVATVAFGMGIDKPDVRFV 388
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 389 IHHSMSKSMENYYQESGRAGRDDARADCILYYGFGDIFRI 428
>gi|387771794|ref|ZP_10127951.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
gi|386908179|gb|EIJ72877.1| ATP-dependent DNA helicase RecQ [Haemophilus parahaemolyticus
HK385]
Length = 601
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 217/338 (64%), Gaps = 9/338 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ QFR Q + I+A L+G+D +M TGGGKS+CYQ+P+L GI LV+SPLI
Sbjct: 10 ILQNVFGYQQFRQGQQEVIEATLAGKDTLVIMTTGGGKSLCYQVPSLCLEGITLVISPLI 69
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L GI +L+S+QT++ + I + SG+ L+LLY++PE T GF
Sbjct: 70 SLMKDQVDQLLTNGIEAGYLNSSQTLEEQRVIEQKALSGQ--LKLLYLSPEKVMTQGFYH 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ S ++ +A+DEAHC+S WGHDFRP Y L +LRN P++P++ALTATA P +
Sbjct: 128 FI----SHCKISFIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNIPLMALTATADPTTR 183
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L P SF+RPN+ Y V+ K L + IVYC R
Sbjct: 184 ADILLHLRLNEPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFIAGQKGKSGIVYCNSR 240
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ LSA IS YHAG++ + R +V + + QVVVATVAFGMGI++ +VR
Sbjct: 241 KKVEEITEKLSARNISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATVAFGMGINKSNVR 300
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V HF++P+S+E++YQE+GRAGRD LPS+++++Y D
Sbjct: 301 FVVHFDLPRSIESYYQETGRAGRDDLPSQAVMFYDPAD 338
>gi|228473728|ref|ZP_04058475.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
gi|228274840|gb|EEK13658.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
Length = 729
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 226/358 (63%), Gaps = 17/358 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG + F+ KQ + I++++ F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 8 LQKALKSIFGFSAFKGKQEEIIRSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 67
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDVIR--GISGTDKIAHVLNSSLTKGEIRNVMEDIRNG--DTKLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
+ LK I+ ++ VA+DEAHCIS WGHDFRP YR + ++ L + +PI+AL
Sbjct: 124 LTKDEYADFLKTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIPIIAL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + V KSSFNRPNL+YEVR K + +D+ +K
Sbjct: 180 TATATTKVQEDILKNLGVPEANVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQRPGQ 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFG
Sbjct: 238 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSK 376
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++ K
Sbjct: 298 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVGK 355
>gi|421724743|ref|ZP_16163951.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
gi|410374417|gb|EKP29090.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
Length = 608
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQDTIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|397655279|ref|YP_006495981.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
gi|394344006|gb|AFN30127.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
Length = 608
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 224/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + + SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|419313842|ref|ZP_13855697.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11E]
gi|378154783|gb|EHX15854.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11E]
Length = 454
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|359406153|ref|ZP_09198865.1| ATP-dependent DNA helicase RecQ [Prevotella stercorea DSM 18206]
gi|357556705|gb|EHJ38287.1| ATP-dependent DNA helicase RecQ [Prevotella stercorea DSM 18206]
Length = 723
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/345 (44%), Positives = 210/345 (60%), Gaps = 11/345 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVSPLIA
Sbjct: 11 LKHHFGFDSFKGDQEAIIRNLLEGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV GL E+ +L+S+ ++Y+D+ G+ +LLYV PE
Sbjct: 71 LMKNQVDVVNGLSEESGVAHYLNSSLNRAAINQVYKDVHEGRT--KLLYVAPESLNKEDN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ + ++ AIDEAHCIS WGHDFRP YR + N + P++ALTATA K
Sbjct: 129 LEFFRSFK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGAAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+ +SL + + KSSFNR NL+YEVR K +D + +K + I+YC+
Sbjct: 185 VRMDIKKSLGITDAKEFKSSFNRANLYYEVRQK--TNDIDKQIIKFIKQHPGKSGIIYCI 242
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I AAYHAGL+ RS DD++ R V+VAT+AFGMGID+ D
Sbjct: 243 SRKKVEELAAVLKANDIKAAAYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGIDKPD 302
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 303 VRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAYKDLQKLE 347
>gi|113869442|ref|YP_727931.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
gi|113528218|emb|CAJ94563.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
Length = 615
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/391 (42%), Positives = 226/391 (57%), Gaps = 24/391 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL A G+ +VVSPLIA
Sbjct: 12 FGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E G+ L+ST T + + DL +G+ + +LYV PE TP F
Sbjct: 72 LMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEILYVAPERLMTPRFQDL 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++I + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTATA +
Sbjct: 130 LERIR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYVPRIALTATADALTRN 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC------AIV 263
+++E L L N V SSF+RPN+ Y + K D+A L + +KA IV
Sbjct: 186 EIIERLALDNARVFISSFDRPNIRYRIVEK---DNARQQLLAFIKAEHTAADGTHDSGIV 242
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R ++ + +LS GI+ YHAG++ + R + V+VAT+AFGMGID
Sbjct: 243 YCLSRKKVEDTAQWLSGQGINALGYHAGMDAQVRQHHQARFREEEGLVMVATIAFGMGID 302
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + K S+
Sbjct: 303 KPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQQKRMIDESE 357
Query: 384 SFSTRERSSKKSISDFSQVLDVAGKRFSRVL 414
+ +R S + + + AG R R+L
Sbjct: 358 ADDAFKRVSSSKLDALLGLCETAGCRRVRIL 388
>gi|419863367|ref|ZP_14385906.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
gi|388342947|gb|EIL08948.1| ATP-dependent DNA helicase RecQ [Escherichia coli O103:H25 str.
CVM9340]
Length = 609
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTVCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|302883319|ref|XP_003040560.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
gi|256721447|gb|EEU34847.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
Length = 838
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 222/364 (60%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F +FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 69 RMLKDRFRMKRFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTQGVTIV 128
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ P + LLYVTPE+
Sbjct: 129 VSPLLSLMQDQVDHMKSLGIQAVAFNGECSAEYKRQVMTAFKERSPEDYIELLYVTPEMV 188
Query: 142 ATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +H +G L + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 189 SKNITFNNGMRTLHDKGKLARIVIDEAHCVSQWGHDFRPDYKTLGQVRQRYPGVPVMALT 248
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N SFNRPNL+YEVR K ++ S++K+ +
Sbjct: 249 ATATQNVIVDIRHNLGMDNCQTFSQSFNRPNLYYEVRGKTTNAKCMDEIASLIKSKYANQ 308
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ LS GI+ YHAG++ + ++ V W + +++VAT+AFG
Sbjct: 309 SGIVYTVSRKNAEKVAESLSDQGITARHYHAGVDPQEKAEVQIAWQQGQIKIIVATIAFG 368
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ ++++
Sbjct: 369 MGIDKPDVRFVIHHGLPKSLEGYYQETGRAGRDGDPSDCILFYGKQDIRILKKLIAEGDG 428
Query: 380 KNSQ 383
Q
Sbjct: 429 NKEQ 432
>gi|325579297|ref|ZP_08149253.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
gi|325159532|gb|EGC71666.1| ATP-dependent helicase RecQ [Haemophilus parainfluenzae ATCC 33392]
Length = 621
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 235/382 (61%), Gaps = 18/382 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + LR FG+ FR Q + I A LSG+D +M TG GKS+CYQIPAL PG+ L
Sbjct: 15 KTTALNTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTL 74
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L+ GI +FL+S+QT + + ++ L SG+ L+LLY++PE
Sbjct: 75 VISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQ--LKLLYISPEKVM 132
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+ PI+ALTAT
Sbjct: 133 TNSFF----QLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTAT 188
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L L +P SF+RPN+ Y E ++K + L + A
Sbjct: 189 ADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEKFKPM-----EQLTRFVLAQKGKS 243
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R+ + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFGM
Sbjct: 244 GIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRECVQQDFQRDNIQVVVATIAFGM 303
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ +L K ++
Sbjct: 304 GINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPET 363
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
Q E+ ++I +F++
Sbjct: 364 PQRQI----EQHKLEAIGEFAE 381
>gi|418020168|ref|ZP_12659486.1| ATP-dependent DNA helicase, partial [Candidatus Regiella
insecticola R5.15]
gi|347604486|gb|EGY29134.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola R5.15]
Length = 534
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 158/384 (41%), Positives = 235/384 (61%), Gaps = 16/384 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++++ ++LR FG+ QFR Q + I A+LSG+DC +MPTGGGKS+CYQIPAL G
Sbjct: 7 INKEQFTTEILRDVFGYQQFRPGQKEIIAAILSGQDCLVIMPTGGGKSLCYQIPALVMKG 66
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ LVVSPLI+LM++QV L G+ L+S+QT Q ++++ SGK ++LLY+ PE
Sbjct: 67 LTLVVSPLISLMKDQVDQLLAYGVTAACLNSSQTWQQQSEVIAKCRSGK--IKLLYIAPE 124
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F+ +L L+AIDEAHCIS WGHDFRP YR L+ L+ P +P++AL
Sbjct: 125 RLVAENFLQQLSFFSP----ALLAIDEAHCISQWGHDFRPEYRALNQLKLRFPHLPVIAL 180
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG 257
TATA + D++ L L PL+ +SF+RPN+ Y + ++K L L ++ G
Sbjct: 181 TATADEVTRSDIIRLLNLHQPLIQINSFDRPNIRYTLIEKFKPL-----EQLYRLVGKQG 235
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R + A L G+S AAYHAGL+ R+ V + + Q+VVATVA
Sbjct: 236 AKSGIIYCNSRAKVESTVARLQNRGLSVAAYHAGLDSLVRAQVQEAFQRDDLQIVVATVA 295
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ ++R V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L +
Sbjct: 296 FGMGINKPNIRFVIHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPSDMVWLRHCLEEK 355
Query: 378 QSKNSQSFSTRERSSKKSISDFSQ 401
Q+ ER ++ F++
Sbjct: 356 PVSEQQNI---ERHKLNAMGAFAE 376
>gi|417604728|ref|ZP_12255290.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
gi|345347248|gb|EGW79562.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_94C]
Length = 609
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ +SF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|170026209|ref|YP_001722714.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186893559|ref|YP_001870671.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|420570412|ref|ZP_15065845.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|420576075|ref|ZP_15070964.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|420634593|ref|ZP_15123519.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|420656190|ref|ZP_15143047.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|420677196|ref|ZP_15162026.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|420715828|ref|ZP_15195768.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|420748668|ref|ZP_15224634.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|420759919|ref|ZP_15234148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|420770307|ref|ZP_15243422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|420775288|ref|ZP_15247941.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|420786536|ref|ZP_15257793.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|420791561|ref|ZP_15262319.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|420807567|ref|ZP_15276750.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
gi|169752743|gb|ACA70261.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186696585|gb|ACC87214.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|391437458|gb|EIQ98312.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|391441078|gb|EIR01593.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|391501167|gb|EIR55597.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|391518233|gb|EIR70963.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|391549862|gb|EIR99531.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|391581169|gb|EIS27080.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|391611365|gb|EIS53551.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|391626018|gb|EIS66438.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|391635100|gb|EIS74299.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|391645325|gb|EIS83215.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|391652808|gb|EIS89836.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|391658455|gb|EIS94858.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|391675277|gb|EIT09812.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
Length = 597
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 234/377 (62%), Gaps = 16/377 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 1 MQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 60
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 61 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 118
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 119 LDQLYQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 174
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 175 TRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 229
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 230 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 289
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 290 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQD 349
Query: 385 FSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 350 I---ERHKLNAMGAFAE 363
>gi|124484849|ref|YP_001029465.1| hypothetical protein Mlab_0020 [Methanocorpusculum labreanum Z]
gi|124362390|gb|ABN06198.1| ATP-dependent DNA helicase, RecQ family [Methanocorpusculum
labreanum Z]
Length = 493
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 225/367 (61%), Gaps = 6/367 (1%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ + + L +F H FR Q + I+ ++SGRD +M TGGGKS+CYQ+PAL G+ +V
Sbjct: 3 KGIQQTLEKYFHHQTFRPNQQEIIEKIVSGRDVLAVMATGGGKSLCYQLPALMLDGMTIV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV L +G+ E L+S QT + ++ +D+ GK +R+LYV+PE T
Sbjct: 63 ISPLIALMKDQVDSLSNQGVTVETLNSLQTYDERRRVEQDMRDGK--VRILYVSPERAVT 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F + L S + L A+DEAHCIS WGH FRP YR++ LR+ P VPI A TATA
Sbjct: 121 PAFFATL----SGCKVALFAVDEAHCISMWGHQFRPEYREIKHLRDKFPGVPIAAFTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D++ L L +P SF+R NL Y V + + S + A+ D I+
Sbjct: 177 TLRVREDIVNELRLNDPAEFIGSFDRRNLRYSVFAEPNAQVRMQKIISYVTAHKDDPGII 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R + +EL+ L I YHAGL RS V + ++++ +V+ ATVAFGMGID
Sbjct: 237 YCFSRASTEELAERLRKVHIMANPYHAGLPTPERSRVQEGFLNNSIRVICATVAFGMGID 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PK +E++YQE+GRAGRD + LL+Y DRR++E +L + + +
Sbjct: 297 KPDVRYVIHAHMPKDIESYYQETGRAGRDGKAGECLLFYSGGDRRKIENMLEREFTDKKK 356
Query: 384 SFSTRER 390
S RE+
Sbjct: 357 SEIAREK 363
>gi|417280748|ref|ZP_12068048.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
gi|386245077|gb|EII86807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3003]
Length = 611
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWDP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|170728871|ref|YP_001762897.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
gi|169814218|gb|ACA88802.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
Length = 608
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 222/350 (63%), Gaps = 10/350 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FRD Q + I+ SG DC +MPTGGGKS+CYQ+PAL PG+ LVVSPLI+LM++
Sbjct: 21 FGYRTFRDGQKEVIEQSCSGYDCLVIMPTGGGKSLCYQLPALQLPGLTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L + G++ +L+S+Q + +I + + SG+ L+LLYV+PE F+ +L ++
Sbjct: 81 QVDSLIQMGVSAAYLNSSQPREESARILQQMHSGE--LKLLYVSPERLLQGHFIDRLHEL 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L+L AIDEAHCIS WGHDFRP Y L LR P VPI+ALTATA +KD+ +
Sbjct: 139 N----LSLFAIDEAHCISQWGHDFRPEYAALGKLREVFPHVPIMALTATADQATRKDICD 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L + P L +SF+RPN+ Y V K +A L + A I+YC R DE
Sbjct: 195 RLTI-TPYSLLTSFDRPNIRYTVAEKL---NAANQLRQFVAAQNGNSGIIYCSSRRRVDE 250
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L G + AYHAG + R+ V D ++ + +VVATVAFGMGI++ +VR V H+
Sbjct: 251 VAERLRLQGHNAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGINKSNVRYVVHY 310
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+IPKS+E++YQE+GRAGRD L S++LL + D R+ ++ +++ Q
Sbjct: 311 DIPKSVESYYQETGRAGRDGLESEALLLFDPADIGRVRHLIEQSEPGPQQ 360
>gi|404494034|ref|YP_006718140.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
gi|77546057|gb|ABA89619.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
Length = 596
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 217/340 (63%), Gaps = 9/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ FG FR Q + + +L G+D F LMPTGGGKS+C+Q+PAL + G+ +VVSP
Sbjct: 6 LDILKRVFGFQSFRPLQEEIVARILDGQDAFVLMPTGGGKSLCFQLPALLRQGVGIVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+ G+ + +S+ + ++ +L +G+ L LLY+ PE +PGF
Sbjct: 66 LISLMKDQVDALRASGVRAAYYNSSLGQKAARQVLAELHAGQ--LDLLYIAPERLMSPGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L+ + + L+AIDEAHCIS WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLRDMD----VALIAIDEAHCISQWGHDFRPEYTQLGVLRRSFPGVPLVALTATADVQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D++ L L + +SF+RPN+ Y V K L L +G IVY L
Sbjct: 180 TRQDILSRLELDDDDCFVTSFDRPNIRYTVLEKH---QPARQLMKFLAGHGSEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L G+S AAYHAGL D R V D+++ Q+VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAKKLCDAGLSAAAYHAGLGDGERQRVQDEFLRDELQIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PK++E +YQE+GRAGRD L +++LL +G D
Sbjct: 297 VRFVVHYDLPKNIEGYYQETGRAGRDGLAAEALLLFGYGD 336
>gi|429740154|ref|ZP_19273860.1| ATP-dependent DNA helicase RecQ [Prevotella saccharolytica F0055]
gi|429154163|gb|EKX96911.1| ATP-dependent DNA helicase RecQ [Prevotella saccharolytica F0055]
Length = 725
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 220/359 (61%), Gaps = 12/359 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKQYFGFDKFKGDQETIIRNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E G +L+S+ ++ ED+ K +LLYV PE +
Sbjct: 67 PLIALMKNQVDVMNGMSEHGCVAHYLNSSLNKSSILEVMEDVRQRKT--KLLYVAPESLS 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK I ++ AIDEAHCIS WGHDFRP YR + + PI+ALTAT
Sbjct: 125 KEENIEFLKTIK----VSFYAIDEAHCISEWGHDFRPEYRNIRPTIMKIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ ++L + + KSSFNR NL+YEVR K D ++ +K + D I
Sbjct: 181 ATDKVRSDIKKNLGISDAKEFKSSFNRVNLYYEVRSK--TQDVDRNIIMFIKQHADKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAAVLQANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D R++E FI K+ ++
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYSNQDLRKLEKFIDGKSGAE 357
>gi|340522439|gb|EGR52672.1| hypothetical protein TRIREDRAFT_102458 [Trichoderma reesei QM6a]
Length = 1690
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/364 (42%), Positives = 218/364 (59%), Gaps = 8/364 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K L+ F FR QL+AI A L+G D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 798 KTLKDRFRMKGFRQNQLEAINATLAGDDAFVLMPTGGGKSLCYQLPAVVKSGKTRGVTIV 857
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI +S + + K ++ D P + LLYVTPE+
Sbjct: 858 VSPLLSLMQDQVDHMKALGIQAVAFNSECSPEYKRQVMSAFDERNPEHFIELLYVTPEMA 917
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ +P FM+ L+ ++ + IDEAHC+S WGHDFRP Y+ L LR P VP++ALT
Sbjct: 918 SKSPQFMNALQNLYRNKKFARIVIDEAHCVSQWGHDFRPDYKTLGQLRAKFPQVPVMALT 977
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L ++N V SFNRPNL+YEVR K + +++KA +
Sbjct: 978 ATATQNVIVDIKHNLRMKNCQVFSQSFNRPNLYYEVRPKGSNPVVTQQIAALIKAKYPNV 1037
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+Y + R ++++ L GI+ YHA + + V W + +VVVAT+AFG
Sbjct: 1038 TGIIYTISRKQAEDVAQKLCEHGITARHYHAQITPSEKVEVQTAWQKGQIKVVVATIAFG 1097
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H IPKS+E +YQE+GRAGRD PS +L+YG D R ++ ++ +
Sbjct: 1098 MGIDKPDVRYVIHHGIPKSLEGYYQETGRAGRDGKPSDCILFYGKGDIRVLKKLILDGEG 1157
Query: 380 KNSQ 383
N Q
Sbjct: 1158 NNEQ 1161
>gi|395218411|ref|ZP_10402063.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394454486|gb|EJF09132.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 624
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 235/391 (60%), Gaps = 13/391 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q I +L +D LMPTGGGKS+CYQ+PA+ PG+ +VVSPLIA
Sbjct: 12 LKLYFGYEQFRPMQEHIITNILQQKDVVVLMPTGGGKSVCYQVPAVVMPGLCVVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L GI +L+S+QT + +I E +G+ ++LLYV+PE + GF S
Sbjct: 72 LMKDQVEALLANGIPAAYLNSSQTADEQYQIEEKSLAGQ--IKLLYVSPEKLLSAGFFSF 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK++ ++L A+DEAHCIS+WGHDFRP Y +L +L+ P VP++ALTATA QK
Sbjct: 130 LKRLQ----VSLFAVDEAHCISAWGHDFRPEYTQLRALKQQFPAVPVVALTATADKLTQK 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ E L L+ P V +SF+RPN+ V + + + L I+YCL R
Sbjct: 186 DIQEQLQLRQPEVFVASFDRPNINLMVLPGQ---NRFNKITDFLSRRHGQPGIIYCLSRK 242
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ L G + YHAG++ + RS + ++ +V AT+AFGMGID+ +VR
Sbjct: 243 ATESLAGKLRENGYNATFYHAGMSAQQRSKAQESFLRDDVLIVCATIAFGMGIDKSNVRW 302
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN-QSKNSQSFSTR 388
V H+N+PK++E +YQE GRAGRD S +LL+Y D + +LS N +S+N
Sbjct: 303 VIHYNLPKNVEGYYQEIGRAGRDGAKSDALLFYSFADVMNLRTMLSDNDKSQNELQLVKL 362
Query: 389 ERSSKKSISDFSQ---VLDVAGKRFSRVLGN 416
ER + + + F + +L G++ SR GN
Sbjct: 363 ERMQQFAEATFCRRRILLQYFGEQMSRDCGN 393
>gi|423126736|ref|ZP_17114415.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
gi|376396730|gb|EHT09369.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
Length = 608
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 224/344 (65%), Gaps = 16/344 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + + SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|415831473|ref|ZP_11517190.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|417599262|ref|ZP_12249886.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|417669412|ref|ZP_12318948.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|418943250|ref|ZP_13496459.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|419280425|ref|ZP_13822664.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|419347603|ref|ZP_13888969.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|419352064|ref|ZP_13893390.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|419357538|ref|ZP_13898783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|419362509|ref|ZP_13903714.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|419367635|ref|ZP_13908783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|419372449|ref|ZP_13913555.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|419377952|ref|ZP_13918966.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|419383345|ref|ZP_13924284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|419388582|ref|ZP_13929446.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|425424847|ref|ZP_18805992.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
gi|323182595|gb|EFZ67999.1| ATP-dependent DNA helicase RecQ [Escherichia coli OK1357]
gi|345348758|gb|EGW81051.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3030-1]
gi|375321441|gb|EHS67277.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H43 str.
T22]
gi|378124120|gb|EHW85532.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10E]
gi|378182454|gb|EHX43106.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13A]
gi|378195639|gb|EHX56135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13C]
gi|378195725|gb|EHX56220.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13B]
gi|378198136|gb|EHX58608.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13D]
gi|378209534|gb|EHX69904.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC13E]
gi|378212157|gb|EHX72481.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14A]
gi|378214771|gb|EHX75074.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14B]
gi|378223929|gb|EHX84138.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14C]
gi|378227658|gb|EHX87827.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC14D]
gi|397783043|gb|EJK93905.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_O31]
gi|408340410|gb|EKJ54905.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1288]
Length = 609
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ +SF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|375014002|ref|YP_004990990.1| ATP-dependent DNA helicase RecQ [Owenweeksia hongkongensis DSM
17368]
gi|359349926|gb|AEV34345.1| ATP-dependent DNA helicase RecQ [Owenweeksia hongkongensis DSM
17368]
Length = 731
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 216/352 (61%), Gaps = 19/352 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG QF+ Q I V++G D F +MPTGGGKSMCYQ+PAL + G +VVSPLIA
Sbjct: 10 LKKYFGFDQFKGNQEAVINNVIAGNDTFVIMPTGGGKSMCYQLPALMQSGTAIVVSPLIA 69
Query: 90 LMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
LM+NQV ++ E G+A L+ QT QVK ED+ +G +LLYV PE
Sbjct: 70 LMKNQVDSIRGFSEEHGVAHVLNSSLTKGQTEQVK----EDIRNG--ITKLLYVAPESLT 123
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L+ ++ AIDEAHCIS WGHDFRP YR L ++ + P++ALTAT
Sbjct: 124 KEENIEFLQGCD----ISFYAIDEAHCISEWGHDFRPEYRNLKNIITAIGRKPVIALTAT 179
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A PKVQ D+ ++L + + V K+SFNRPNL+YEVR K + D+ +K + I
Sbjct: 180 ATPKVQGDIQKNLGMDDAQVFKASFNRPNLYYEVRPK--TEHVDRDIIKFIKGHMGKSGI 237
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L GI+ YHAGL+ K+R D ++ V+VAT+AFGMGI
Sbjct: 238 IYCLSRKKVEELAETLQVNGINALPYHAGLDAKSRVRHQDAFLMEEADVIVATIAFGMGI 297
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
D+ DVR V H+++PKS+E++YQE+GRAGRD + +Y D ++E L
Sbjct: 298 DKPDVRFVMHYDMPKSLESYYQETGRAGRDGGEGICIAFYAYKDIEKLEKFL 349
>gi|262040869|ref|ZP_06014095.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041758|gb|EEW42803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 608
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 237/383 (61%), Gaps = 19/383 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQLQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFAE 376
>gi|432374232|ref|ZP_19617263.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE11]
gi|430893654|gb|ELC15978.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE11]
Length = 611
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|422355837|ref|ZP_16436541.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
gi|324016198|gb|EGB85417.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 117-3]
Length = 611
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ +SF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
Length = 619
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 222/355 (62%), Gaps = 13/355 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S + +AIDEAHCIS WGHDFRP Y +L L+ PD PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA Q+D++ L L+N SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 355
>gi|432399769|ref|ZP_19642542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|432408892|ref|ZP_19651593.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|432725287|ref|ZP_19960200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|432729896|ref|ZP_19964768.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|432743585|ref|ZP_19978298.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|432988316|ref|ZP_20176995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|433113097|ref|ZP_20298944.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
gi|430912931|gb|ELC34103.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE25]
gi|430925933|gb|ELC46529.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE28]
gi|431262506|gb|ELF54496.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE17]
gi|431270666|gb|ELF61828.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE18]
gi|431280876|gb|ELF71785.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE23]
gi|431502029|gb|ELH80922.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE217]
gi|431624586|gb|ELI93202.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE150]
Length = 604
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 10 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 69
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 70 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGE--IRLLYIAPERLMLDNFL 127
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 128 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTT 183
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 184 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 239 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 299 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 335
>gi|345317380|ref|XP_001519897.2| PREDICTED: ATP-dependent DNA helicase Q5 [Ornithorhynchus anatinus]
Length = 412
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 234/394 (59%), Gaps = 13/394 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 17 FGFDSFKTALQESATMAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVVSPLIALI 76
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + + +L +P L+LLYVTPE+ A P F L
Sbjct: 77 QDQVDHLLALKVQAASLNSKLPAAERRALEAELGRPEPRLKLLYVTPEMVAAPSFQPILN 136
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL + +DEAHC+S WGHDFRP Y +L +LR LP P +ALTATA +V+ DV
Sbjct: 137 SLVSRRLLAYLVVDEAHCVSQWGHDFRPDYLQLGALRARLPHTPCVALTATAPRQVRDDV 196
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CA 261
+ +L L+ P+ ++ R NLFY+V +KDLL D +ADL L+A G+ C
Sbjct: 197 VAALGLRQPIATFQTPCFRANLFYDVCFKDLLSDPFADLWDFCLQALGERDARGAFSGCG 256
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R V ++W+ + V+VAT++FGMG
Sbjct: 257 IVYCRTREACDQLARELSYRGLEAKAYHAGLKAAERVLVQNEWMEEKVPVIVATISFGMG 316
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H++I KSM +YQESGRAGRD S LYY DR ++ F++ K ++
Sbjct: 317 VDKANVRCVAHWHIAKSMAGYYQESGRAGRDGKASWCRLYYSRKDRDQISFLIKKEIAR- 375
Query: 382 SQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLG 415
QS + S K ++ F ++ + S V G
Sbjct: 376 LQSKRGHKDSDKAALKAFDVLVAFCEESGSGVAG 409
>gi|170022156|ref|YP_001727110.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 8739]
gi|169757084|gb|ACA79783.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli ATCC
8739]
Length = 609
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLIDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|189499066|ref|YP_001958536.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
gi|189494507|gb|ACE03055.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
Length = 674
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 232/361 (64%), Gaps = 10/361 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
+ +P+ +K AL L FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+P
Sbjct: 57 NEPRQPVPDK-ALFDTLHKVFGFHSFRPNQENIVRAILDGRDVFAVMPTGGGKSLCYQLP 115
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G +V+SPLIALM++QV G + GI +L+S+ + + + + ++L S SL L
Sbjct: 116 AVLLSGTCVVISPLIALMKDQVDGARANGIRAAYLNSSLSPEEQASVQQELLSD--SLDL 173
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE F L +++ +++ +DEAHCIS WGHDFRP Y LS+L P
Sbjct: 174 LYVAPERFRLEHFQKLLGEVN----ISMAVVDEAHCISEWGHDFRPDYLLLSALVQLFPG 229
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP+ A TATA KVQ+D++ L L++PL++++SF+R NLFY++R+K ++A A L S+L
Sbjct: 230 VPVAAFTATATLKVQQDILHKLSLRDPLLVRASFDRSNLFYDIRFK---ENANAQLVSIL 286
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K+N I+Y R + +E +A L A G YHAGL+D+ R + +I ++V
Sbjct: 287 KSNPGQAGIIYRTSRKSVNETAALLKAKGFRALPYHAGLSDEERQRNQEAFIRDEADIIV 346
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ ++RLV H ++PKS+E++YQE+GRAGRD P++ L + D ++ F
Sbjct: 347 ATIAFGMGIDKSNIRLVIHADLPKSIESYYQETGRAGRDGEPARCTLLFSQSDIPKIRFF 406
Query: 374 L 374
+
Sbjct: 407 I 407
>gi|366158888|ref|ZP_09458750.1| ATP-dependent DNA helicase RecQ [Escherichia sp. TW09308]
Length = 609
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPMLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|415758430|ref|ZP_11481551.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416048573|ref|ZP_11576347.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347992536|gb|EGY33932.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655277|gb|EGY70749.1| ATP-dependent DNA helicase RecQ [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 629
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 214/335 (63%), Gaps = 13/335 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I AVL+G+DC +M TG GKS+CYQIPAL G LVVSPLI+LM++
Sbjct: 39 FGYQSFRKGQQEIINAVLNGQDCLVIMATGTGKSLCYQIPALCFDGTTLVVSPLISLMKD 98
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A ++L+STQT + + ++ SG+ L+LLY++PE T F +
Sbjct: 99 QVDQLRANGVAADYLNSTQTFEEQQQVQNRAISGQ--LKLLYLSPEKVMTSSFFQFI--- 153
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +AIDEAHCIS WGHDFRP Y +L L+ P VPI+ALTATA Q+D+++
Sbjct: 154 -SLCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKGSFPKVPIMALTATADQTTQQDILQ 212
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L P SF+RPN+ Y + ++K + LC + A IVYC R
Sbjct: 213 NLRLNRPHFYVGSFDRPNIRYTLVEKFKPM-----EQLCRFVLAQKGKSGIVYCNSRNKV 267
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+ ++ L G+ AAYHAG+ + R V D+ QVVVAT+AFGMGI++ +VR V
Sbjct: 268 ERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINKSNVRFVA 327
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 328 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPAD 362
>gi|191166095|ref|ZP_03027930.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209921301|ref|YP_002295385.1| ATP-dependent DNA helicase RecQ [Escherichia coli SE11]
gi|300823362|ref|ZP_07103493.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|307313604|ref|ZP_07593224.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|309796230|ref|ZP_07690640.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|331670669|ref|ZP_08371506.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331679934|ref|ZP_08380597.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|378715260|ref|YP_005280153.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386611198|ref|YP_006126684.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|386699326|ref|YP_006163163.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|386711730|ref|YP_006175451.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|416345829|ref|ZP_11679244.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|417221737|ref|ZP_12025177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|417241736|ref|ZP_12037493.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|417269798|ref|ZP_12057158.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|419947661|ref|ZP_14463980.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|422778553|ref|ZP_16832201.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|423708132|ref|ZP_17682512.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|432379058|ref|ZP_19622038.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|432762684|ref|ZP_19997145.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|432811570|ref|ZP_20045425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|432829440|ref|ZP_20063054.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|432836825|ref|ZP_20070344.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|432965586|ref|ZP_20154507.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|433094218|ref|ZP_20280465.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
gi|190903871|gb|EDV63585.1| ATP-dependent DNA helicase RecQ [Escherichia coli B7A]
gi|209914560|dbj|BAG79634.1| DNA helicase RecQ [Escherichia coli SE11]
gi|300524148|gb|EFK45217.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 119-7]
gi|306906585|gb|EFN37097.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|308120112|gb|EFO57374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 145-7]
gi|315063115|gb|ADT77442.1| ATP-dependent DNA helicase [Escherichia coli W]
gi|320198470|gb|EFW73071.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4100B]
gi|323380821|gb|ADX53089.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|323943861|gb|EGB39955.1| ATP-dependent DNA helicase RecQ [Escherichia coli H120]
gi|331062142|gb|EGI34064.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA271]
gi|331072481|gb|EGI43813.1| ATP-dependent DNA helicase RecQ [Escherichia coli H591]
gi|383390853|gb|AFH15811.1| ATP-dependent DNA helicase RecQ [Escherichia coli KO11FL]
gi|383407422|gb|AFH13665.1| ATP-dependent DNA helicase RecQ [Escherichia coli W]
gi|385709045|gb|EIG46047.1| ATP-dependent DNA helicase recQ [Escherichia coli B799]
gi|386201539|gb|EII00530.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.154]
gi|386211853|gb|EII22304.1| ATP-dependent DNA helicase RecQ [Escherichia coli 9.0111]
gi|386228603|gb|EII55959.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.3884]
gi|388422564|gb|EIL82138.1| ATP-dependent DNA helicase RecQ [Escherichia coli CUMT8]
gi|430895567|gb|ELC17829.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE12]
gi|431315306|gb|ELG03229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE48]
gi|431359645|gb|ELG46278.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE101]
gi|431381178|gb|ELG65810.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE136]
gi|431382069|gb|ELG66414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE135]
gi|431476162|gb|ELH55956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE203]
gi|431606692|gb|ELI76066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE138]
Length = 611
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ +SF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQINSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|336365577|gb|EGN93927.1| hypothetical protein SERLA73DRAFT_78305 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378141|gb|EGO19300.1| hypothetical protein SERLADRAFT_443341 [Serpula lacrymans var.
lacrymans S7.9]
Length = 804
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 230/389 (59%), Gaps = 23/389 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLIALME 92
FGH ++ KQ + ++A +SG D F L PTG GK +PA+ K GI +VVSPL+ALM+
Sbjct: 54 FGHVDYKGKQREIVEAAISGVDVFVLAPTGMGK-----VPAVVEKFGISIVVSPLLALMK 108
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
NQV L+ K + L+S + K +I +DL SG+P RLLY+TPE T M L
Sbjct: 109 NQVASLRRKNVCVASLTSETPKEDKQEILDDLLSGQPQNRLLYITPERLFTKDIMRLLTI 168
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ R +VA+ +AHCIS WGHDFR YRKL + R+ P VPI+ALTATA P VQ+D++
Sbjct: 169 VYER-QRQVVAL-QAHCISEWGHDFRAEYRKLGNFRDRFPGVPIMALTATATPGVQQDII 226
Query: 213 ESLCLQNPLVLKS--SFNRPNLFYEVRYKDLLDD--AYADLCSVL-----KANGDTCAIV 263
SL + + K+ FNRPNLFYEVRY D AD+ + + + IV
Sbjct: 227 RSLKMDRNSLFKAVHPFNRPNLFYEVRYASAPDSLSQMADILEFITSLHRRRERPSSGIV 286
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK----QVVVATVAFG 319
YC R CDELSAYL G++ YH G+ K L +W VV AT+AFG
Sbjct: 287 YCRTRVVCDELSAYLRGKGLNSRPYHRGIPAKTLDKTLKEWEQGGSGEGVDVVCATIAFG 346
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR + HF++PKS E +YQE+GRAGRD PS+ +LYY +D R+ ++S + +
Sbjct: 347 MGIDKSDVRYIIHFDLPKSFEGYYQETGRAGRDDAPSRCILYYSREDAFRLRRLVSGSHA 406
Query: 380 KNS--QSFSTRERSSKKSISDFSQVLDVA 406
+ + S++SI FS +++ A
Sbjct: 407 RRQFAADAADGPAPSQRSIDSFSSLINFA 435
>gi|312971887|ref|ZP_07786061.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
gi|310334264|gb|EFQ00469.1| ATP-dependent DNA helicase RecQ [Escherichia coli 1827-70]
Length = 609
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQDTFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKPGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|422977416|ref|ZP_16977368.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
gi|371593264|gb|EHN82147.1| ATP-dependent DNA helicase recQ [Escherichia coli TA124]
Length = 611
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + + +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|262404934|ref|ZP_06081486.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
gi|262348773|gb|EEY97914.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
Length = 620
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 151/346 (43%), Positives = 219/346 (63%), Gaps = 12/346 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L FG+ QFR Q + I+A L+GRD +MPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 86
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A E ++ST T + IY + +G+ L+LLYV+PE T F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLTREELIAIYNRMHAGQ--LKLLYVSPERVLTAEFI 144
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P++P++ALTATA
Sbjct: 145 ERLSHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNIPVMALTATADDAT 200
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+M+ L L P SF+RPN+ Y + K + + L+ C I+YC
Sbjct: 201 RHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEK---HKPVSQVIRYLETQRGQCGIIYCGS 257
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + L+ L I A+YHAG++ R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 258 RKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNV 317
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR---RRM 370
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y D RRM
Sbjct: 318 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRM 363
>gi|258542352|ref|YP_003187785.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01]
gi|384042273|ref|YP_005481017.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-12]
gi|384050790|ref|YP_005477853.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-03]
gi|384053898|ref|YP_005486992.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-07]
gi|384057132|ref|YP_005489799.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-22]
gi|384059773|ref|YP_005498901.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-26]
gi|384063065|ref|YP_005483707.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-32]
gi|384119141|ref|YP_005501765.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849726|ref|ZP_16282701.1| DNA helicase RecQ [Acetobacter pasteurianus NBRC 101655]
gi|256633430|dbj|BAH99405.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636489|dbj|BAI02458.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639542|dbj|BAI05504.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642598|dbj|BAI08553.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645653|dbj|BAI11601.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648706|dbj|BAI14647.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651759|dbj|BAI17693.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654750|dbj|BAI20677.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-12]
gi|371459457|dbj|GAB27904.1| DNA helicase RecQ [Acetobacter pasteurianus NBRC 101655]
Length = 626
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 160/363 (44%), Positives = 226/363 (62%), Gaps = 9/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 30 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 89
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 90 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 147
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 148 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 203
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 204 REDILAALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 260
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++ L G AYHAGL+ + + L + S V+VAT+AFGMGIDR DV
Sbjct: 261 RARTERMATSLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATIAFGMGIDRPDV 320
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 321 RAVVHLDMPASPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 380
Query: 388 RER 390
R R
Sbjct: 381 RSR 383
>gi|425778070|gb|EKV16215.1| RecQ family helicase MusN [Penicillium digitatum Pd1]
gi|425780607|gb|EKV18613.1| RecQ family helicase MusN [Penicillium digitatum PHI26]
Length = 1426
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 221/351 (62%), Gaps = 8/351 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPG 79
+ + K+L+ F FR QL+AI A L+G+D F LMPTGGGKS+CYQ+P++ + G
Sbjct: 559 QEVRKVLKDRFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVTGGSTTG 618
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL-DSGKPSLRLLYVTP 138
+ +V+SPL++LME+QV L++ + ++ + K+ I L ++G + +LY+TP
Sbjct: 619 VTIVISPLLSLMEDQVSHLQKLKVKAFMINGDTNPEEKSWIMSQLTNAGGEGMEVLYITP 678
Query: 139 E-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
E L+ + + L+K+H R L + IDEAHC+S WGHDFRP Y++L +R P VP++
Sbjct: 679 EMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVRARFPGVPVM 738
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256
ALTATA V+ DVM +L + + V SFNRPNL YEVR K D+ A + + ++
Sbjct: 739 ALTATATENVKVDVMHNLKITDCEVFLQSFNRPNLTYEVRSKGKNDEVLASMAETISSSY 798
Query: 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ C I+YCL R TC++ + L + AYHAG++ A++ +W R ++VAT
Sbjct: 799 RNQCGIIYCLSRKTCEKTAEDLRTKYRLKAQAYHAGMSATAKTEAQRNWQMGRVHIIVAT 858
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD S LY+G D
Sbjct: 859 IAFGMGIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRSGCYLYFGYKD 909
>gi|282880882|ref|ZP_06289575.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
gi|281305264|gb|EFA97331.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
Length = 725
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 214/355 (60%), Gaps = 11/355 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K L + L+ +FG F+ +Q I +L+G F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKVNLTEKLKLYFGFDSFKGEQEAIINHLLAGNSAFVLMPTGGGKSLCYQLPSLLMEG 60
Query: 80 IVLVVSPLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+VVSPLIALM+NQV G+ E+ FL+S+ ++ +D+ +G+ +LLYV
Sbjct: 61 TAIVVSPLIALMKNQVDVINGISEEEGVAHFLNSSLNKAAIQQVMDDVRAGRT--KLLYV 118
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE + K + ++ AIDEAHCIS WGHDFRP YR + N + D P+
Sbjct: 119 APESLNKEENIEFFKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPV 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA KV+ D+ SL + + KSSFNRPNL+YE+R K D + ++ +
Sbjct: 175 IALTATATDKVRTDIKRSLGIADAREFKSSFNRPNLYYEIRQKS--SDIDKQIIMFIRQH 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+
Sbjct: 233 EGKSGIIYCLSRKKVEELSEVLKANNIKAAPYHAGLDSVTRSQTQDDFLMERIDVIVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 293 AFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLKKLE 347
>gi|149372419|ref|ZP_01891607.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149354809|gb|EDM43372.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 730
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 158/355 (44%), Positives = 221/355 (62%), Gaps = 14/355 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG ++F+ Q IQ++L+ + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 6 LYAALKQYFGFSKFKGLQEVVIQSILNRENTFVIMPTGGGKSLCYQLPALMNEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV L+ ++GIA SS +VK ++ D++SG +LLYV PE
Sbjct: 66 PLIALMKNQVDALRAISSDEGIAHVLNSSLNKTEVK-QVKSDIESG--ITKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALT 200
++ L+ ++ +AIDEAHCIS WGHDFRP YR L S+ + ++PI+ LT
Sbjct: 123 TKDEYVDFLQ----NQTISFLAIDEAHCISEWGHDFRPEYRNLKSIIERIGENIPIIGLT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA KVQ+D++++L + + K+SFNRPNL+YEVR K D+ D+ +K N
Sbjct: 179 ATATEKVQEDILKNLAMTSANTFKASFNRPNLYYEVRSKTKNIDS--DITRFVKQNEGKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K R D ++ VVVAT+AFGM
Sbjct: 237 GIIYCLSRKRVEELAQILQVNGIKAVPYHAGLDAKTRVRHQDMFLMEECDVVVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
GID+ DVR V H ++PKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 297 GIDKPDVRFVIHNDMPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMS 351
>gi|261250050|ref|ZP_05942627.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260939554|gb|EEX95539.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 602
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 219/340 (64%), Gaps = 12/340 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FRD Q + I++ ++G+D +MPTGGGKS+CYQIPAL + G+ LV+SPLI+LM++
Sbjct: 15 FGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+A E ++ST + + +Y + SG +L+L+YV+PE F+ +L+ +
Sbjct: 75 QVDQLKANGVAAECINSTMSREELISVYNRMHSG--ALKLVYVSPERVLMRDFIERLESL 132
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++A+DEAHCIS WGHDFRP Y L L+ Y P VP++ALTATA +KD+M+
Sbjct: 133 P----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPVMALTATADDATRKDIMQ 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L P SF+RPN+ Y + K + + L+ +C I+YC R +
Sbjct: 189 RLQLNEPHTYLGSFDRPNIRYTLVEKH---KPVSQVVRFLENQRGSCGIIYCGSRKKVEM 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L G+ A+YHAGL R+ V + + Q+VVATVAFGMGI++ +VR V HF
Sbjct: 246 VTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
+IP+++E++YQE+GRAGRD LP+++++ Y D RRM
Sbjct: 306 DIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRM 345
>gi|345564877|gb|EGX47836.1| hypothetical protein AOL_s00083g48 [Arthrobotrys oligospora ATCC
24927]
Length = 1720
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 216/353 (61%), Gaps = 8/353 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
+ + L+ F FR QL+AI A L G D F LMPTGGGKS+CYQ+PA+ G I
Sbjct: 869 VARALKTTFKLKGFRANQLEAINATLGGNDVFVLMPTGGGKSLCYQLPAVVSSGKTKGIT 928
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS--GKPSLRLLYVTPE 139
V+SPL++LME+QV L I +S+ T + + +I ++L S S++LLYVTPE
Sbjct: 929 FVISPLLSLMEDQVDHLGALKIRAFMFNSSITAEERREILKELKSPDAATSIQLLYVTPE 988
Query: 140 LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ A+ M + + +H R L+ V IDEAHC+S WGHDFR Y++L LR L VP +A
Sbjct: 989 MLASSKMMEAAMGSLHKRNLIARVVIDEAHCVSQWGHDFRKDYKELGKLRTGLRGVPFMA 1048
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA P+VQ+D+M +L + K SFNRPNL YEV K D+ ++++ +
Sbjct: 1049 LTATATPQVQQDLMRNLSITKCKTFKQSFNRPNLVYEVLEKVKGGQVVQDIINLIQTSYK 1108
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYCL + C+++S++L I YHAGL R +V W +V+VAT+A
Sbjct: 1109 GKCGIVYCLSKNDCEQVSSHLQKARILANFYHAGLTTDERRNVQKRWQCGELKVIVATIA 1168
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
FGMGID+ DVR V H +IPKS+E +YQE+GRAGRD S L+Y +D R+
Sbjct: 1169 FGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKISGCYLFYSGNDMMRI 1221
>gi|194438627|ref|ZP_03070715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253775552|ref|YP_003038383.1| ATP-dependent DNA helicase RecQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163767|ref|YP_003046875.1| ATP-dependent DNA helicase RecQ [Escherichia coli B str. REL606]
gi|254290517|ref|YP_003056265.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300930009|ref|ZP_07145442.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|422789266|ref|ZP_16841997.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|422794104|ref|ZP_16846795.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|442596884|ref|ZP_21014685.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194422431|gb|EDX38430.1| ATP-dependent DNA helicase RecQ [Escherichia coli 101-1]
gi|253326596|gb|ACT31198.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975668|gb|ACT41339.1| ATP-dependent DNA helicase [Escherichia coli B str. REL606]
gi|253979824|gb|ACT45494.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|300462099|gb|EFK25592.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 187-1]
gi|323959079|gb|EGB54748.1| ATP-dependent DNA helicase RecQ [Escherichia coli H489]
gi|323969335|gb|EGB64634.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA007]
gi|441654632|emb|CCQ00598.1| ATP-dependent DNA helicase RecQ [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 611
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|304383399|ref|ZP_07365865.1| ATP-dependent helicase RecQ [Prevotella marshii DSM 16973]
gi|304335567|gb|EFM01831.1| ATP-dependent helicase RecQ [Prevotella marshii DSM 16973]
Length = 726
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 215/345 (62%), Gaps = 11/345 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G+ +V+SPLIA
Sbjct: 12 LKQYFGFDKFKGDQEAIIRNLLDGNDTFVLMPTGGGKSLCYQLPSLIMDGMAIVISPLIA 71
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ + D+ GK +LLYV PE +
Sbjct: 72 LMKNQVDVINGISEEEGVAHYLNSSLNKASIDHVKADILCGKT--KLLYVAPESLTKEEY 129
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+S LK + ++ AIDEAHCIS WGHDFRP YR++ L N + P++ALTATA K
Sbjct: 130 VSFLKGVK----ISFYAIDEAHCISEWGHDFRPEYRRIRPLINEIGIAPVIALTATATDK 185
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+ ++L + + KSSFNRPNL+YEVR K D + ++ + IVYCL
Sbjct: 186 VRTDIKKNLGIADAKEFKSSFNRPNLYYEVRAK--TQDIDKQIIKFIRQHQGKSGIVYCL 243
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T +EL+A L A I A YHAGL+ RS D ++ R V+VAT+AFGMGID+ D
Sbjct: 244 SRKTVEELAAVLCANDIKAAPYHAGLDSAKRSQTQDAFLMERIDVIVATIAFGMGIDKPD 303
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VR V H++IPKS+E +YQE+GRAGRD + +Y +D R++E
Sbjct: 304 VRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCITFYSNNDLRKLE 348
>gi|289208024|ref|YP_003460090.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
gi|288943655|gb|ADC71354.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
Length = 626
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 156/375 (41%), Positives = 226/375 (60%), Gaps = 14/375 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +LR FG++ FR +Q I+ V +G D LMPTGGGKS+CYQIPALA+PG +V+
Sbjct: 19 APLDILRETFGYSDFRGQQQAVIEHVTAGGDAVVLMPTGGGKSLCYQIPALARPGCAVVI 78
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+A L S Q + + L +G+ L LLY++PE
Sbjct: 79 SPLIALMQDQVAALRQNGVAAASLDSGQNAETARGVLAALHAGE--LDLLYLSPERLFAS 136
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
G + +L+ I L L AIDEAHC+S WGHDFRP Y +L+ L + PDVP +ALTATA
Sbjct: 137 GMLERLQGIE----LALFAIDEAHCVSQWGHDFRPEYGQLAVLAEHFPDVPRMALTATAD 192
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYAD--LCSVLKANGDTCA 261
++++ E L L+ SSF+RPN+ Y V D A D L + + +
Sbjct: 193 GPTRQEIRERLRLEQARAFISSFDRPNIRYRVAQADGGRGGAPRDRLLRFIREEHAGEAG 252
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R D ++ +L+ G+ YHAGL+ + R+ ++ V+VAT+AFGMG
Sbjct: 253 IVYCLSRKKVDAVAEWLAEQGVPALPYHAGLSARTRAENQTRFLREEGVVMVATIAFGMG 312
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ +VR V H N+PKS+E +YQE+GRAGRD LP+ + + YG+ D + + +
Sbjct: 313 IDKPNVRFVAHMNLPKSLEGYYQETGRAGRDGLPANAWMVYGLQD-----VVTLRQMLEG 367
Query: 382 SQSFSTRERSSKKSI 396
SQ+ R+R ++ +
Sbjct: 368 SQAGPERQRIEQQKL 382
>gi|381403551|ref|ZP_09928235.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
gi|380736750|gb|EIB97813.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
Length = 608
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 219/341 (64%), Gaps = 10/341 (2%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL + +L+ FG+ QFR Q I LSGRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 QEALAQQVLQDTFGYQQFRPGQQTIINQALSGRDCLVVMPTGGGKSLCYQIPALVREGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A L+ST T + + + D +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAACLNSTMTREQQQTVMADCRTGR--VKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L ++A+DEAHCIS WGHDFRP Y L LR P+VP++ALTA
Sbjct: 127 MMDNFLDNLAHWQP----VMLAVDEAHCISQWGHDFRPEYGALGRLRERFPEVPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D++ L +Q+PL+ SSF+RPN+ Y + K D L ++ C
Sbjct: 183 TADETTRNDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPTD---QLLRYVQDQRGKCG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G+S AYHAG++ + R+ V + + Q+VVATVAFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 340
>gi|119480183|ref|XP_001260120.1| RecQ family helicase MusN [Neosartorya fischeri NRRL 181]
gi|119408274|gb|EAW18223.1| RecQ family helicase MusN [Neosartorya fischeri NRRL 181]
Length = 1564
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 13/395 (3%)
Query: 8 MQSTSQTQKNKPLHEKEALVK----LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
M +T ++Q + PL + K +LR F FR QL+AI A LSG+D F LMPTG
Sbjct: 700 MPATQKSQIHNPLWNQNPWTKDVKNVLRDRFHLRGFRMNQLEAIDATLSGKDTFVLMPTG 759
Query: 64 GGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
GGKS+CYQ+P++ + G+ +VVSPL++LM++QV LK I L+ + +
Sbjct: 760 GGKSLCYQLPSIVTSGSTRGVTIVVSPLLSLMQDQVSHLKRLKIKAFLLNGETKQEERQW 819
Query: 120 IYEDLD--SGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176
I + L + + + LLY+TPE+ + + L+K++ R L + IDEAHC+S WGHD
Sbjct: 820 IMQTLSGPAAEEQIELLYITPEMVNKSQALIRSLEKLNRRRRLARIVIDEAHCVSQWGHD 879
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y+ L +R+ LP VP++ALTATA V+ DV+ +L ++ + SFNRPNL YEV
Sbjct: 880 FRPDYKALGEVRDQLPGVPMMALTATATENVKVDVIHNLKMEGCEIFTQSFNRPNLTYEV 939
Query: 237 RYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELS-AYLSAGGISCAAYHAGLND 294
R K + ++ ++K + + I+YCL R TC+ ++ A S I YHAG++
Sbjct: 940 RQKTKSAEVLENIADIIKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDS 999
Query: 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R+ V + W S R V+VAT+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD
Sbjct: 1000 SKRAEVQEWWQSGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGK 1059
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
S LYY D + ++ K + Q R+
Sbjct: 1060 RSGCYLYYSYRDATSIMSMIDKGEGGKQQKNRQRQ 1094
>gi|440297665|gb|ELP90322.1| ATP-dependent RNA helicase DBP3, putative [Entamoeba invadens IP1]
Length = 809
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 214/367 (58%), Gaps = 2/367 (0%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ + ++L F H R Q I +L+G + LMPTGGGKS+CYQ+P L K G L
Sbjct: 348 RDKVNQVLNGVFHHKSLRLLQYPVINCILAGHNVLVLMPTGGGKSLCYQLPMLFKDGYTL 407
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
VVSPLI+LM++QV L GI +S +K ED+ + R++YV PEL
Sbjct: 408 VVSPLISLMQDQVKALNNIGIQAITCNSNSPQNMKL-FEEDVRFNRRKYRVVYVAPELLD 466
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ F+S +K+I+ +GL + + IDE HC+S WGHDFR SY KL R P V + TA
Sbjct: 467 MSSNFISLMKQINEKGLFSYLVIDEVHCVSQWGHDFRESYVKLRDFRKKFPSVQTIMFTA 526
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V+ DV+ SL L+ LV +FNR NL Y+++YK D D+ +K + C
Sbjct: 527 TATERVKNDVLISLGLEEALVFNQTFNRVNLTYQIKYKSSQDQCVTDIIQYIKEHAGQCG 586
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IV+C R C+++ L + I YHAG+ + R S+ D W+ VV ATVAFGMG
Sbjct: 587 IVFCFSRKDCEKMDESLKSSKIKSEYYHAGMKAEERKSIQDGWMKGTYDVVCATVAFGMG 646
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +P S+E F+QESGRAGRD PS+ ++YY D +++ ++ S + +N
Sbjct: 647 IDKADVRFVIHQTMPSSVEQFFQESGRAGRDGKPSECIVYYSQVDVKKIIWLKSGGKPEN 706
Query: 382 SQSFSTR 388
+ R
Sbjct: 707 IEKVVER 713
>gi|251787081|ref|YP_003001385.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
gi|242379354|emb|CAQ34167.1| ATP-dependent DNA helicase [Escherichia coli BL21(DE3)]
Length = 609
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|342905065|ref|ZP_08726857.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
gi|341951895|gb|EGT78444.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21621]
Length = 619
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/382 (41%), Positives = 235/382 (61%), Gaps = 16/382 (4%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKPIALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFEGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATRQDILTHLNLENPHKYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L GIS AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGISAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL +
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE 360
Query: 380 KNSQSFSTRERSSKKSISDFSQ 401
+ + E+ ++I +F++
Sbjct: 361 TSQRQI---EQHKLEAIGEFAE 379
>gi|224095634|ref|XP_002200254.1| PREDICTED: ATP-dependent DNA helicase Q1 [Taeniopygia guttata]
Length = 661
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 222/363 (61%), Gaps = 11/363 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
+K+ P +EK + L+ F +FR QL+ + A ++G+D F +MPTGGGKS+CYQ+P
Sbjct: 69 NKKDFPWYEK--IKAALQSRFKLQKFRSLQLETVNAAMAGKDIFLVMPTGGGKSLCYQLP 126
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G LV+ PLI+LME+Q++ L++ GI+ L+++ + + ++ ++ L+L
Sbjct: 127 AVCSDGFTLVICPLISLMEDQLMVLEQLGISAALLNASSSKEHVKWVHTEMLKRNSQLKL 186
Query: 134 LYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192
+YVTPE + + FMSKL+K + G L +A+DE HC S WGHDFRP Y+ L L+ P
Sbjct: 187 IYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFP 246
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYA 247
+ P++ LTATA V KD L + + +SFNRPNL+YEVR+K D ++D
Sbjct: 247 NTPLIGLTATATNHVLKDAQNILHVHKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVK 306
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+ K IVYC + ++++ L GI YHA ++ K ++ V W ++
Sbjct: 307 TINGRYKG---MSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWATN 363
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 364 QIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDI 423
Query: 368 RRM 370
R+
Sbjct: 424 FRI 426
>gi|415799701|ref|ZP_11498958.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|419319320|ref|ZP_13861114.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|419325342|ref|ZP_13867026.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|419331540|ref|ZP_13873131.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|419336784|ref|ZP_13878296.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|419342409|ref|ZP_13883861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|420393960|ref|ZP_14893204.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
gi|323161113|gb|EFZ47031.1| ATP-dependent DNA helicase RecQ [Escherichia coli E128010]
gi|378161445|gb|EHX22422.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12B]
gi|378164595|gb|EHX25537.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12A]
gi|378165464|gb|EHX26398.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12C]
gi|378179327|gb|EHX40057.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12D]
gi|378182541|gb|EHX43192.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC12E]
gi|391310039|gb|EIQ67702.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPEC C342-62]
Length = 609
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAVAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>gi|419938599|ref|ZP_14455425.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
gi|388409947|gb|EIL70208.1| ATP-dependent DNA helicase RecQ [Escherichia coli 75]
Length = 611
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQLLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|194429200|ref|ZP_03061728.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300923326|ref|ZP_07139374.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
gi|194412712|gb|EDX29006.1| ATP-dependent DNA helicase RecQ [Escherichia coli B171]
gi|300420412|gb|EFK03723.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 182-1]
Length = 611
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAVAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|423123017|ref|ZP_17110701.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
gi|376391770|gb|EHT04440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
Length = 608
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 233/377 (61%), Gaps = 18/377 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I L GRDC +MPTGGGKS+CYQ+PAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQETIIDTALGGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L S L +VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTATA
Sbjct: 133 EHL----SHWNLAMVAVDEAHCISQWGHDFRPEYAALGQLRQRVPQIPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT---CAIVY 264
++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D I+Y
Sbjct: 189 RRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 243 CNSRSKVEDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K +
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPAGP 359
Query: 385 FSTRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 360 LQDIERHKLNAMGAFAE 376
>gi|339021936|ref|ZP_08645916.1| DNA helicase RecQ [Acetobacter tropicalis NBRC 101654]
gi|338751063|dbj|GAA09220.1| DNA helicase RecQ [Acetobacter tropicalis NBRC 101654]
Length = 632
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/363 (43%), Positives = 227/363 (62%), Gaps = 9/363 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q A++ ++ G D LMPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 31 EVLQSVFGYPDFRSLQAQAVKGIMDGEDTLVLMPTGGGKSICYQIPALCRAGMGLVVSPL 90
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S + KI DL +G+ + LLYV+PE PG +
Sbjct: 91 IALMDDQVAGLRQLGINAAALHSELENEEAAKIRSDLANGR--IDLLYVSPERLLAPGTL 148
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +R ++++AIDEAHCIS+WGH+FRP YR+L++L + P VP +ALTATA +
Sbjct: 149 ERL----TRQTISVIAIDEAHCISAWGHEFRPEYRELAALPRHFPGVPRIALTATADQRT 204
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++ +L + + VL SSF+RPNL K L +VL+ + + IVYC
Sbjct: 205 RADILSALDMPHARVLISSFHRPNLNIAALPKA---SELRQLTTVLERHKEEACIVYCGS 261
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G + A+HAGL+ + + L + S V+VATVAFGMGIDR DV
Sbjct: 262 RARTERIAASLRERGWTALAFHAGLSPIEKRAALLRFRSGEPIVIVATVAFGMGIDRPDV 321
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS ++L YG +D R + L ++ + ++
Sbjct: 322 RAVIHLDMPASPEAYYQQIGRAGRDGLPSDTVLLYGGEDMARARYWLDQSNAPETEKRVM 381
Query: 388 RER 390
R R
Sbjct: 382 RAR 384
>gi|293417289|ref|ZP_06659914.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
gi|291431057|gb|EFF04052.1| ATP-dependent DNA helicase RecQ [Escherichia coli B185]
Length = 611
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 218/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVVAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|123440598|ref|YP_001004592.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087559|emb|CAL10340.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 616
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ P++P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|432871713|ref|ZP_20091743.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
gi|431407675|gb|ELG90884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE147]
Length = 611
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCCTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 342
>gi|440227317|ref|YP_007334408.1| ATP-dependent DNA helicase RecQ [Rhizobium tropici CIAT 899]
gi|440038828|gb|AGB71862.1| ATP-dependent DNA helicase RecQ [Rhizobium tropici CIAT 899]
Length = 626
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 214/349 (61%), Gaps = 12/349 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +L+ +G++ FR KQ I+ V+SG D L PTG GKS+C+QIPAL + GI +VV
Sbjct: 26 APLDVLKRVYGYSAFRGKQQQVIEHVVSGGDAVVLFPTGAGKSLCFQIPALCRDGIGIVV 85
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM +QV +K+ GI L+S+ + + + +Y + +GK L LLYVTPE AT
Sbjct: 86 SPLIALMRDQVEAMKQLGIRAAALNSSLSREEASDVYRAISAGK--LDLLYVTPERIATE 143
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
GF L R + L AIDEAHC+S WGHDFRP YR L L P VP +ALTATA
Sbjct: 144 GFCQML----GRAKIALFAIDEAHCVSQWGHDFRPEYRDLGRLAELFPGVPRIALTATAD 199
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P + D++E L L + V +SF+RPN+ YE+ +D L L+ + IVY
Sbjct: 200 PHTRDDIIERLALDDAKVFTTSFDRPNITYEIVERD---QPRQQLLRFLEGHRGDSGIVY 256
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R ++ + +L+ GI YHAG++ R + D ++ +VATVAFGMGID+
Sbjct: 257 CLSRAKVEDTAEWLNGQGIRALPYHAGMDRALRDANQDAFLKEEDLCLVATVAFGMGIDK 316
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
+VR V H ++P S+EA+YQE+GRAGRD LPS + YGM D R RM
Sbjct: 317 PNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSNVWMAYGMADVIQRGRM 365
>gi|298708608|emb|CBJ26095.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1537
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/364 (42%), Positives = 227/364 (62%), Gaps = 24/364 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FGHA+FR Q + I + G+D F LMPTGGGKS+CYQ+PA PG+ +V SPLI+L+++
Sbjct: 588 FGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQD 647
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKI-----YEDLDSGKPSLRLLYVTPE-LTATPGFM 147
QV ++ G+ +++S Q + ++ Y D G L+LLY+TPE +P
Sbjct: 648 QVAQMRATGVEAAYINSEQDYDSEVRVVMDQLYRLQDYG--GLKLLYITPEKFCRSPSMN 705
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+++HS+GLL+ IDEAHC+S WGHDFRP Y KL LR PDVPI+ALTATA V
Sbjct: 706 KALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVV 765
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD--LLDDAYADLCSVLKANGDTCAIVYC 265
+ D + L L+NP V SFNRPNL YE+R K +LD ++ V+++ IVYC
Sbjct: 766 RDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAAVLD----EIAKVMQSFPGQSGIVYC 821
Query: 266 LERTTCDELSAYL------SAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
L R C+++++ L + GG YHA ++ V +W + R ++ AT
Sbjct: 822 LSRKDCEKVASGLLKKLSETTGGHRGRFRVDFYHADRTAAEKARVHREWSAGRIHLICAT 881
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGI++ DVR V H ++PK++ FYQESGRAGRD L SK ++++ D+ R+E +++
Sbjct: 882 IAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVN 941
Query: 376 KNQS 379
+++S
Sbjct: 942 RDKS 945
>gi|421746369|ref|ZP_16184170.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
gi|409775096|gb|EKN56626.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
Length = 619
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 228/400 (57%), Gaps = 24/400 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGI 80
A + +L+ FG+ FR +Q + I+ V G DC LMPTGGGKS+CYQIPAL A G+
Sbjct: 3 AALAILKDVFGYHAFRGRQAEIIEHVAEGGDCLVLMPTGGGKSLCYQIPALLRQRAGHGV 62
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L E G+ L+ST T + + DL +G+ L +LYV PE
Sbjct: 63 GIVVSPLIALMQDQVAALTEAGVRAAVLNSTLTGAQASAVERDLLAGR--LEILYVAPER 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
TP F L R + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALT
Sbjct: 121 LMTPRFQDLL----DRTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPQVPRIALT 176
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA----- 255
ATA +++++E L L + V SSF+RPN+ Y + KD +A L + +KA
Sbjct: 177 ATADDVTRQEIVERLALDDARVFLSSFDRPNIRYRIVEKD---NARQQLLAFIKAEHMAA 233
Query: 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
IVYCL R +E + +L GI+ YHAG+ R + V+VA
Sbjct: 234 DGTHDSGIVYCLSRRKVEETADWLRGHGINALPYHAGMEAAVRQQHQARFRDEEGLVMVA 293
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D +
Sbjct: 294 TIAFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQ 348
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVL 414
K S++ T +R S + + + AG R R+L
Sbjct: 349 QKRMIDESEADETHKRVSSAKLDALLGLCETAGCRRVRIL 388
>gi|393212620|gb|EJC98120.1| ATP-dependent DNA helicase [Fomitiporia mediterranea MF3/22]
Length = 914
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 255/469 (54%), Gaps = 55/469 (11%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLI---- 88
FG+ ++ KQ + I+ + G D F + PTG GKS C+QIPA A K G+ L+VSPL+
Sbjct: 51 FGYEGYKGKQKEIIETAILGVDVFVVAPTGMGKSACFQIPAAAEKNGVTLIVSPLLGVVC 110
Query: 89 -------------ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
ALM+NQV L++ I +S K KI DL S P+ RLLY
Sbjct: 111 VIRQNDFTEVWFLALMKNQVSRLQDLNIPAASYTSDTLGPEKKKIIADLRSSCPTTRLLY 170
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
+TPE+ ++ F ++K+ RG LN + +DEAHCIS WGHDFR YRKL S R PDVP
Sbjct: 171 LTPEMLSSAEFNKVVEKLCRRGELNRLVVDEAHCISEWGHDFRSVYRKLGSFRENYPDVP 230
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRY------KDLLDDAYA 247
I+ALTA+A VQ+D++ SL + +L+ + FNR NLFYEVRY ++ + D +
Sbjct: 231 IMALTASATKTVQEDIVNSLRMDRDRMLRVTHPFNRENLFYEVRYSTDMSQEERMVDVFQ 290
Query: 248 DLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ + K G + IVYC R TCDEL+ YL G+S YH GL + L +W
Sbjct: 291 FISLLHKRRGRPSSGIVYCRLRATCDELARYLRCNGLSARPYHRGLKSRELDRTLQEWQE 350
Query: 307 SRK-----QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
VVVAT+AFGMGID+ DVR + H+++PKS+E +YQE+GRAGRD P+K +LY
Sbjct: 351 GGNGEGGCDVVVATIAFGMGIDKADVRYIVHYDLPKSLEGYYQETGRAGRDGDPAKCVLY 410
Query: 362 YGMDDRRRMEFILSK--NQSKNSQS------FSTRERSSKKSISDFSQVLDVAGKRFSRV 413
Y +D F + K N K +Q+ F E S++ + FS ++++A
Sbjct: 411 YTREDALAANFFVKKSYNDRKETQAAQMLPMFCAPE-PSQRCLDSFSALINLA------- 462
Query: 414 LGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 462
DV + I + ++ + K S C CD CK+P
Sbjct: 463 ---ENIDVCRHISICRYFGELIDENDEAVRK----SYCDRMCDVCKYPE 504
>gi|336248080|ref|YP_004591790.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|444353809|ref|YP_007389953.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
gi|334734136|gb|AEG96511.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|443904639|emb|CCG32413.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
Length = 608
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/383 (41%), Positives = 237/383 (61%), Gaps = 19/383 (4%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQESIIATALEGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L S L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHL----SHWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPHIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQ 401
K + ER ++ F++
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFAE 376
>gi|334131083|ref|ZP_08504849.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
gi|333443713|gb|EGK71674.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
Length = 601
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/364 (43%), Positives = 223/364 (61%), Gaps = 14/364 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA +K+L+ FGHA FR Q D +Q V SG D LMPTGGGKS+CYQ+PAL + G +V
Sbjct: 3 EAALKVLKEVFGHAGFRGAQADIVQHVASGGDALVLMPTGGGKSLCYQVPALLRSGTAVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV + + G+ FL+ST + ++ L G +L LLYV PE T
Sbjct: 63 VSPLIALMQDQVAAMTQLGVRAAFLNSTLDLDQVREVERSLLDG--TLDLLYVAPERLNT 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P + L I L AIDEAHC++ WGHDFRP Y +LS L PDVP +ALTATA
Sbjct: 121 PRCLDLLSHIRP----ALFAIDEAHCVAQWGHDFRPEYLQLSVLHERFPDVPRIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAI 262
P + ++++ L L + V SSF+RPN+ Y + K DDA L ++ + + I
Sbjct: 177 DPATRDEIIDRLALHDARVFVSSFDRPNIRYTIVDK---DDARKQLLRFIRTEHPEDAGI 233
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R DE + +L A G+ YHAG++ R++ + +VVAT+AFGMGI
Sbjct: 234 VYCLSRKKVDETAEWLVAQGLKALPYHAGMDAATRAAHQARFQREEGLIVVATIAFGMGI 293
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQSKN 381
D+ DVR V H ++P+S+E +YQE+GRAGRD + + + YG+ D ++ FI +QS+
Sbjct: 294 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGGAADAWMAYGLADVVQQRRFI---DQSEG 350
Query: 382 SQSF 385
S++F
Sbjct: 351 SEAF 354
>gi|332159828|ref|YP_004296405.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310846|ref|YP_006006902.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243645|ref|ZP_12870111.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420261107|ref|ZP_14763764.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548693|ref|ZP_20504742.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
gi|318607629|emb|CBY29127.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664058|gb|ADZ40702.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862578|emb|CBX72731.1| ATP-dependent DNA helicase recQ [Yersinia enterocolitica W22703]
gi|351776862|gb|EHB19136.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511396|gb|EKA25274.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790342|emb|CCO67782.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
Length = 616
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/376 (41%), Positives = 233/376 (61%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ P++P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 364 ---ERHKLNAMGAFAE 376
>gi|427788647|gb|JAA59775.1| Putative atp-dependent dna helicase [Rhipicephalus pulchellus]
Length = 924
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/388 (40%), Positives = 234/388 (60%), Gaps = 19/388 (4%)
Query: 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGG 64
AM+ S +K H AL L FGH +R Q AI+AV G+D F MPTG
Sbjct: 9 AMEPASSVNPDKLSH---ALADALTRVFGHKSYRSGLQKKAIEAVAQCGQDVFVSMPTGA 65
Query: 65 GKSMCYQIPALAKP--GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GKS+C+Q+PA+ P + +VVSPLIALM +Q+ LK + E ++ST + + ++
Sbjct: 66 GKSLCFQLPAVVVPKDSVTVVVSPLIALMTDQLQKLKSLNVRAETINSTMSSLERQRVRR 125
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DL S P RLLYVTPE A+ F + L ++ G L+ +DEAHC+S WGHDFRP Y
Sbjct: 126 DLMSMSPETRLLYVTPEQVASEKFQAVLSALYKIGKLSRFVVDEAHCVSEWGHDFRPDYL 185
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDL 241
KL +R+ PDVP++ALTATA+ KV D++ L L+ P+ + K+S R NL+Y+V +K+
Sbjct: 186 KLGKVRDMFPDVPMVALTATASAKVFDDILVQLRLRQPVAIFKTSSFRANLYYDVEFKEA 245
Query: 242 LDDAYADLCSV-LKANGD----------TCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290
LD+ + +L + ++A G+ IVYC R C+E+S L++ G+ YH
Sbjct: 246 LDEPFENLKNFSIRALGEGWEEEDPKKRGSGIVYCRTRDACEEVSMKLTSLGLLTKPYHG 305
Query: 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350
G+ R D+W + ++ ATV+FGMG+DR VR V H+++P+S+ A+YQESGRAG
Sbjct: 306 GMKAAERKENQDEWTRGQVPIIAATVSFGMGVDRAMVRFVAHWSVPQSIPAYYQESGRAG 365
Query: 351 RDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
RD PS +YY DR+ + ++L +++
Sbjct: 366 RDGRPSYCRIYYSRKDRKSITYLLKRDE 393
>gi|121710174|ref|XP_001272703.1| RecQ family helicase MusN [Aspergillus clavatus NRRL 1]
gi|119400853|gb|EAW11277.1| RecQ family helicase MusN [Aspergillus clavatus NRRL 1]
Length = 1542
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/393 (40%), Positives = 234/393 (59%), Gaps = 15/393 (3%)
Query: 11 TSQTQKNKPLHEKEA----LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGK 66
T ++Q + PL + + ++L+ F FR QL+AI A LSG+D F LMPTGGGK
Sbjct: 681 TQKSQTHNPLWNQHPWSKDVKRVLKDKFHLRGFRMNQLEAIDATLSGKDTFVLMPTGGGK 740
Query: 67 SMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
S+CYQ+P++ + G+ +VVSPL++LM++QV LK I L+ +T I +
Sbjct: 741 SLCYQLPSVVTTGSTRGVTIVVSPLLSLMQDQVSHLKAINIKAFLLNGETKRDERTWIMQ 800
Query: 123 DLDS--GKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
L + + LLY+TPE+ + + L+K++ R L + IDEAHC+S WGHDFRP
Sbjct: 801 TLSGPVAEERIELLYITPEMINKSQALIQSLEKLNKRHRLARIVIDEAHCVSQWGHDFRP 860
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
Y++L +RN LP VP++ALTATA V+ D + +L ++ + SFNRPNL YEVR K
Sbjct: 861 DYKELGEIRNRLPGVPMIALTATATENVKVDTIHNLKMEGCEIFTQSFNRPNLTYEVRQK 920
Query: 240 DLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKAR 297
+ + + +K + + IVYCL R C+ ++ L++ I YHAG+ R
Sbjct: 921 GKSSEVMDSIANTIKTSYPNKSGIVYCLSRKACESVAEILASKYKIKADFYHAGVASAKR 980
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
+ V + W + R V+VAT+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD S
Sbjct: 981 AEVQERWQTGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRSG 1040
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
LYY D ++ ++ K + N Q TR+R
Sbjct: 1041 CYLYYSYRDYTSLQSMIDKGEGSNEQ--KTRQR 1071
>gi|429218110|ref|YP_007179754.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
gi|429128973|gb|AFZ65988.1| ATP-dependent DNA helicase RecQ [Deinococcus peraridilitoris DSM
19664]
Length = 726
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 218/341 (63%), Gaps = 10/341 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++L+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL + +VVSP
Sbjct: 10 VQVLKTVFGYDAFRGPQADIVRHVAAGADALVLMPTGGGKSLCYQVPALLRGATAIVVSP 69
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L++ G+ +L+S+ ++ E L G+ L+LLYV PE TP F
Sbjct: 70 LIALMKDQVDALRQLGVRAAYLNSSLGAYEAREVEEALRHGE--LQLLYVAPERLMTPRF 127
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L R ++L AIDEAHC+S WGHDFRP Y +L+ L P VP LALTATA
Sbjct: 128 LDLL----DRSEVSLFAIDEAHCVSQWGHDFRPEYLQLAVLAERYPHVPRLALTATADEA 183
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA-IVYC 265
+++++E L LQ SSF+RPN+ Y + K+ +A L ++A D A IVYC
Sbjct: 184 TRREIVEKLHLQGARQFISSFDRPNIHYRIVEKN---NALRQLLEFIRAEHDGDAGIVYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R + +E +A+L+A G+S YHAGL + R+ + ++ V+VATVAFGMGID+
Sbjct: 241 LSRKSVEESAAWLAAQGVSALPYHAGLGPEVRARHQERFLREEGLVMVATVAFGMGIDKP 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VR V H ++PKS+E +YQE+GRAGRD LPS L+ YG+ D
Sbjct: 301 NVRFVAHLDLPKSLEGYYQETGRAGRDGLPSTVLMTYGLAD 341
>gi|319957274|ref|YP_004168537.1| ATP-dependent DNA helicase recq [Nitratifractor salsuginis DSM
16511]
gi|319419678|gb|ADV46788.1| ATP-dependent DNA helicase RecQ [Nitratifractor salsuginis DSM
16511]
Length = 594
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 212/340 (62%), Gaps = 8/340 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ HFGH FR Q +A+ A+LS RD ++PTGGGKS+CYQ+P L PG+ +VVSP
Sbjct: 4 LEILKRHFGHQGFRPLQEEAVDAILSRRDLLMILPTGGGKSLCYQLPTLMMPGVTIVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM +QV L E GI L S Q+ + + + L G+ L+LLYV PE F
Sbjct: 64 LLALMHDQVTALLEMGIPAAMLGSMQSFEEQQETVRRLRRGE--LKLLYVAPERLNNDFF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L + +N IDEAHC+S WGH+FR YR+LS LR P VPI A TATA +
Sbjct: 122 SQLLSTLP----INFFVIDEAHCVSEWGHEFREDYRRLSLLRERYPQVPIAAFTATATRE 177
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+ L L++P+ ++ S R NL R++ + D A L +L A+ IVY L
Sbjct: 178 VEADIASQLGLRDPVRVRGSLYRENLTVSARHR--VGDGRAQLLDLLSAHKGESGIVYTL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + L+ +L A G S A +HAGL+ + R V +++++ + + VVATVAFGMGID+ +
Sbjct: 236 SRKQTESLADHLRAKGYSAATFHAGLSAEERRRVYEEFVADKIETVVATVAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+R V H ++PKS+E +YQE GRAGRD L +++LL +G D
Sbjct: 296 IRYVAHMSLPKSVENYYQEIGRAGRDGLEAETLLLFGAQD 335
>gi|329297040|ref|ZP_08254376.1| ATP-dependent DNA helicase RecQ [Plautia stali symbiont]
Length = 607
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 217/335 (64%), Gaps = 9/335 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I+ LSGRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLQDTFGYQQFRPGQQTIIETALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQT + + +++ D SGK LRLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRSGK--LRLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+ + ++A+DEAHCIS WGHDFRP Y L LR + +P++ALTATA
Sbjct: 133 DTLQHWNP----VMLAVDEAHCISQWGHDFRPEYGALGQLRQRILQLPVMALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++ L + +PL+ SSF+RPN+ Y + K L ++ I+YC
Sbjct: 189 RNDIVHLLQMHDPLIQISSFDRPNIRYTLVEK---FKPTEQLLRYVQDQRGKSGIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +A L + GIS AYHAG++ + R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 246 RAKVEDTAARLQSRGISVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 340
>gi|119355903|ref|YP_910547.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
gi|119353252|gb|ABL64123.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
Length = 619
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/401 (39%), Positives = 237/401 (59%), Gaps = 20/401 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
AL + LR FG FR Q ++ ++ RD F +MPTGGGKS+CYQ+PA+ PG +V+
Sbjct: 18 ALYETLRKVFGFRDFRPNQEMIVRTIIEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVI 77
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV G + GI FL+S+ + +T + D SL LLYV PE
Sbjct: 78 SPLIALMKDQVDGARANGIRAAFLNSSLAPEERTLVLRD--LLSNSLDLLYVAPERFTLD 135
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F LK+++ +++ IDEAHCIS WGHDFRP Y LS L PD+P+ A TATA
Sbjct: 136 QFQEMLKRVN----ISMAVIDEAHCISEWGHDFRPDYLSLSQLVTLFPDLPVAAFTATAT 191
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+VQ+D+++ L L+NP V+++SF+R NL+Y++R+K ++A L ++LK N I+Y
Sbjct: 192 HQVQRDILDKLALRNPFVVRASFDRANLYYDIRFK---ENASDQLVALLKQNSGKAGIIY 248
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
R + +E +A L A G YHAGL D R + +I V+VATVAFGMGID+
Sbjct: 249 RTSRKSVNETAALLKAKGFRVLPYHAGLGDDERKQNQEAFIRDEVDVIVATVAFGMGIDK 308
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
++R V H ++PKS+E +YQE+GRAGRD ++ L + D ++ F + Q + ++
Sbjct: 309 SNIRFVIHADLPKSIENYYQETGRAGRDGEAARCTLLFSQSDIPKVRFFIDAMQDETERA 368
Query: 385 FSTRERSSKKSISDFSQVLDVAGKRFSR--VLGNRYWDVWP 423
+++ FS+V+ A R L + + + +P
Sbjct: 369 ---------RALGAFSKVISFASTSVCRRKTLLDYFGETYP 400
>gi|423203715|ref|ZP_17190283.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
gi|404612493|gb|EKB09554.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
Length = 611
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 230/371 (61%), Gaps = 11/371 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + E+ + LL+ FG+ QFR QL+ I+ +++GRD L PTGGGKS+CYQIPAL +P
Sbjct: 9 PDPQPESPLALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRP 68
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L+ G+A +++S + + + + + G+ ++L+YV+P
Sbjct: 69 GLGVVVSPLISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGE--IKLVYVSP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E FM +L ++ L L AIDEAHC+S WGHDFRP Y L L+ + P VP++A
Sbjct: 127 ERLLQHEFMDRLAELP----LGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVA 182
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + D++ L L +P + +SF+RPN+ Y + K A L +++
Sbjct: 183 LTATADEATRSDMLHRLELNDPFIHTASFDRPNIRYSLVEKF---KAAEQLLRYVQSQKG 239
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYC R +E++ LS G A YHAGL + R D ++ ++VVATVAF
Sbjct: 240 NCGIVYCSSRNRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQDAFLKDDIEIVVATVAF 299
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H++IPK++E++YQE+GRAGRD P+++LL Y D R+ +L +
Sbjct: 300 GMGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLL--DN 357
Query: 379 SKNSQSFSTRE 389
+N Q +
Sbjct: 358 IENPQQLQVEQ 368
>gi|212556507|gb|ACJ28961.1| ATP-dependent DNA helicase RecQ [Shewanella piezotolerans WP3]
Length = 607
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 227/363 (62%), Gaps = 10/363 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H + L L+ FG+ FRD Q + I+ + +G+DC +MPTGGGKS+CYQ+PAL PG+
Sbjct: 8 HPVDQLSASLQSVFGYRTFRDGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALQLPGL 67
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLI+LM++QV L + G++ +L+S+Q + KI + + G+ L+LLYV+PE
Sbjct: 68 TVVVSPLISLMKDQVDSLIQTGVSAAYLNSSQPREESLKILQQMRYGE--LKLLYVSPER 125
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
F+ +L +++ ++L AIDEAHCIS WGHDFRP Y L LR P VPI+ALT
Sbjct: 126 LLQASFIDRLHELN----ISLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPLVPIMALT 181
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA + D+ E L ++ P L +SF+RPN+ Y V K +A L + A
Sbjct: 182 ATADNATRVDICERLTIE-PFSLLTSFDRPNIRYTVAEKL---NAANQLRQFIDAQNGNS 237
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R DE++ L G AYHAG + R+ V D ++ + +VVATVAFGM
Sbjct: 238 GIVYCSSRRRVDEVAERLRMQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGM 297
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ +VR V H++IPKS+EA+YQE+GRAGRD L S++L+ + D R+ ++ +++
Sbjct: 298 GINKSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPG 357
Query: 381 NSQ 383
Q
Sbjct: 358 PQQ 360
>gi|189502632|ref|YP_001958349.1| hypothetical protein Aasi_1309 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498073|gb|ACE06620.1| hypothetical protein Aasi_1309 [Candidatus Amoebophilus asiaticus
5a2]
Length = 637
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/338 (44%), Positives = 223/338 (65%), Gaps = 10/338 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ ++G+ +FR QL+ IQA LS +D L+PTGGGKS+C+QIPALAKPGI LVV+PLI
Sbjct: 7 ILKKYWGYNRFRSLQLEIIQATLSKKDVLALLPTGGGKSICFQIPALAKPGICLVVTPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK++ I+ + + + I ++ G + LY++PE T F++
Sbjct: 67 SLMKDQVEQLKKRNISAAAIFTGMSYAEIDLILDNCIYGHT--KFLYISPERLKTELFIT 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+++K+H +NL+AIDEAHCIS WG+DFRPSY +++ LR LP+V I+ALTATA V+
Sbjct: 125 RVQKMH----VNLLAIDEAHCISQWGYDFRPSYLEIAELRPLLPNVNIIALTATATRAVK 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ + L +NP+V + SFNR NL Y V+ D D A L + +K AI+Y R
Sbjct: 181 QDIQDKLAFKNPVVFQKSFNRDNLAYLVKRTDDKDGALLRLLNRIKG----TAIIYVNTR 236
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+S +L+ I+ YH GL++ R+ D WI + +V+VAT AFGMGID+ DVR
Sbjct: 237 KKTKLISQFLAKNNINTTFYHGGLDNTERTQRQDAWIKGKVRVMVATNAFGMGIDKPDVR 296
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
LV H ++P ++EA+YQE+GRAGRD+ S +++ Y D
Sbjct: 297 LVVHLDLPTTLEAYYQEAGRAGRDEQKSYAIILYDEQD 334
>gi|308188864|ref|YP_003932995.1| ATP-dependent DNA helicase RecQ [Pantoea vagans C9-1]
gi|308059374|gb|ADO11546.1| ATP-dependent DNA helicase RecQ [Pantoea vagans C9-1]
Length = 609
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 218/341 (63%), Gaps = 10/341 (2%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL + +L+ FG+ QFR Q I LSGRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 QEALAQQVLQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A +L+ST T + + D +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAAYLNSTMTRDQQQTVMADCRTGR--VKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L ++A+DEAHCIS WGHDFRP Y L +R P++P++ALTA
Sbjct: 127 MMDNFLESLAHWQP----AMLAVDEAHCISQWGHDFRPEYGALGKMRQRFPELPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D++ L +Q+PL+ SSF+RPN+ Y + K D L ++ C
Sbjct: 183 TADETTRNDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPTD---QLLRYVQDQRGKCG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G S AYHAG++ + R+ V + + Q+VVATVAFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGFSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLY 340
>gi|194291033|ref|YP_002006940.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224868|emb|CAQ70879.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
Length = 615
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 227/391 (58%), Gaps = 24/391 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL A G+ +VVSPLIA
Sbjct: 12 FGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E G+ L+ST T + + DL +G+ + +LYV PE TP F+
Sbjct: 72 LMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEILYVAPERLMTPRFLDL 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTATA +
Sbjct: 130 LERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYVPRIALTATADALTRD 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC------AIV 263
+++E L L + + SSF+RPN+ Y + K D+A L + +KA IV
Sbjct: 186 EIVERLALHDARIFISSFDRPNIRYRIVEK---DNARQQLLAFIKAEHTAADGTHDSGIV 242
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R ++ + +LS GI+ AYHAG++ + R + V+VAT+AFGMGID
Sbjct: 243 YCLSRKKVEDTAQWLSGQGINALAYHAGMDAQVRQHHQARFREEEGLVMVATIAFGMGID 302
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + K S+
Sbjct: 303 KPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQQKRMIDESE 357
Query: 384 SFSTRERSSKKSISDFSQVLDVAGKRFSRVL 414
+ +R S + + + AG R R+L
Sbjct: 358 ADEAFKRVSSSKLDALLGLCETAGCRRQRIL 388
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,122,073,151
Number of Sequences: 23463169
Number of extensions: 337262347
Number of successful extensions: 887936
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 26205
Number of HSP's successfully gapped in prelim test: 3977
Number of HSP's that attempted gapping in prelim test: 822270
Number of HSP's gapped (non-prelim): 41495
length of query: 529
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 382
effective length of database: 8,910,109,524
effective search space: 3403661838168
effective search space used: 3403661838168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)