BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009675
(529 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/522 (67%), Positives = 422/522 (80%), Gaps = 38/522 (7%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALAKPGIVLVVSPLIALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 179 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 239 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVL---DVAGKRFSRVLGNR 417
YYG+DDR++ME++L +NS++ + SSKK SDF Q++ + +G R ++L
Sbjct: 359 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKIL--- 408
Query: 418 YWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQ 477
SF ++ PV CK +CDACKHPN +A L EL + +
Sbjct: 409 --------------------ESFG--EEFPVQQCKKTCDACKHPNQVAHCLEELMTTASR 446
Query: 478 KNHFSQIFI-SSQDMTDGGQYSEFWNRDDEASGSEEDISDCD 518
+++ S+IFI SS + T+ GQYSEFWNR+++ S S E+ISD D
Sbjct: 447 RHNSSRIFITSSNNKTNEGQYSEFWNRNEDGSNSNEEISDSD 488
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 324 bits (831), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 12/361 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE ++A+
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASG 354
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
S +H RGLL IDEAHC+S WGHDFRP Y KLSSLR P VPI+ALTAT
Sbjct: 355 RLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTAT 414
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---- 258
A PK+ D + L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 415 ATPKIVTDARDHLKMQNSKLFISSFVRDNLKY-----DLIPKAARSLINVVEKMKQLYPG 469
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R C+ + L+ G+S YHAGLND R SV WI+++ V+ AT+AF
Sbjct: 470 KSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGN 589
Query: 379 S 379
+
Sbjct: 590 T 590
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 225/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1010 DGNHHTRET 1018
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 223/334 (66%), Gaps = 6/334 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + SS NRPNLFY VR K L+ D A+ +N ++ IVYC R
Sbjct: 265 EMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
V H ++ KSME +YQESGRAGRD LPS+ +L++
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFF 417
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 264/464 (56%), Gaps = 36/464 (7%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ K +K + + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471
+ + Y+ L C CD C++P + + L L
Sbjct: 414 ----AAIAKYFGDAL------PACAKGCDHCQNPTAVRRRLEAL 447
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 318 bits (814), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFST 387
N + T
Sbjct: 1018 DGNYHTKET 1026
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 163/369 (44%), Positives = 223/369 (60%), Gaps = 3/369 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P PG+
Sbjct: 603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGV 661
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 662 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEK 721
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP++AL
Sbjct: 722 VCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMAL 781
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+KD++ L + P + SFNR NL YEV K A + + K + +
Sbjct: 782 TATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPND 841
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL D R V WI+ QV+ AT+AF
Sbjct: 842 SGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAF 901
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ +
Sbjct: 902 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEK 961
Query: 379 SKNSQSFST 387
NS + T
Sbjct: 962 DGNSHTKQT 970
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L +++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKA 1079
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 311 bits (798), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/393 (43%), Positives = 231/393 (58%), Gaps = 11/393 (2%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
S LL+Y D R+ ++ + NS + T
Sbjct: 716 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQT 748
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 249/427 (58%), Gaps = 19/427 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 449 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 508
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 509 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 568
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 569 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 628
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 629 QALGLVNCVVFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDC 686
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 687 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 746
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ S + R
Sbjct: 747 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 805
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ RY + + FL LV HL ++ + C
Sbjct: 806 ----VASSGRLLETNTENLLRMV--RYCENE--VECRRFLQLV------HLGEKFDSTNC 851
Query: 452 KNSCDAC 458
K +CD C
Sbjct: 852 KKTCDNC 858
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 245/402 (60%), Gaps = 25/402 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVS 85
L+ F FR QL+AI LSG+D F LMPTGGGKS+CYQ+PA+ A G+ LV+S
Sbjct: 511 LKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVIS 570
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++Q+ L++ I LS Q + ++ L + ++LLYVTPE A+ G
Sbjct: 571 PLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNG 630
Query: 146 FMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+ +P +ALTATA
Sbjct: 631 AITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATAN 690
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--DTCAI 262
V+KD++ +L ++N L LKSSFNRPNLFYE++ K D Y +L + +NG I
Sbjct: 691 EIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK---KDLYTELYRFI-SNGHLHESGI 746
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+YCL RT+C++++A L G+ YHAGL R + ++W S +++VAT+AFGMG
Sbjct: 747 IYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMG 806
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + I+S +
Sbjct: 807 VDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDA 866
Query: 381 NSQSFSTRERSSKKSISDF---------SQVLDVAGKRFSRV 413
++ R+R + + F QVL G+ F +V
Sbjct: 867 ETKE---RQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKV 905
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 226/359 (62%), Gaps = 12/359 (3%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKN 1021
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/436 (38%), Positives = 249/436 (57%), Gaps = 25/436 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 465 FGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQD 524
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I+ LS+ + +I ++L S K +LLYVTPE A + + L+
Sbjct: 525 QIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEI 584
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SR LL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 585 LNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVV 644
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K + D+ ++ N D C I+YCL R C
Sbjct: 645 QALGLVNCVVFRQSFNRPNLWYSVVPK--TNKCLEDIDKFIRENHFDECGIIYCLSRMDC 702
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR V
Sbjct: 703 EKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 762
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTR 388
H ++PKS+E ++QE GRAGRD S +LYY D R++ ++S+ Q + ++ +
Sbjct: 763 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCK 822
Query: 389 ERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPV 448
S + ++ +L + + V R FL LV HL ++
Sbjct: 823 ASSGRMLETNTENLLRMVSYCENEVDCRR------------FLQLV------HLGEKFDS 864
Query: 449 SLCKNSCDACKHPNLL 464
+ CKN+CD C +L
Sbjct: 865 TNCKNTCDNCSSSKIL 880
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 219/337 (64%), Gaps = 13/337 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 222/355 (62%), Gaps = 13/355 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S + +AIDEAHCIS WGHDFRP Y +L L+ PD PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA Q+D++ L L+N SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 355
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 216/345 (62%), Gaps = 3/345 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR F +FR QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ GI+ L+S+ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P++ ++ LTATA V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
KD + LC++ L +SFNRPNL+YEVR K +D ++ +++ I+YC
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIYC 321
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ ++++ L G+ YHA + + R+ V W ++ QVVVATVAFGMGID+
Sbjct: 322 FSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKP 381
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
DVR V H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 382 DVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRI 426
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 229/376 (60%), Gaps = 16/376 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I LSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQ+ + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 DHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K +
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPAGQL 360
Query: 386 STRERSSKKSISDFSQ 401
ER ++ F++
Sbjct: 361 QDIERHKLNAMGAFAE 376
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 222/365 (60%), Gaps = 6/365 (1%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A + +DCF LMPTGGGKS+CYQ+PA K G+ +V+SPL++L+++
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K GI FL+S QT + ++L PS +LLYVTPE + + F+ L+
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ +GLL +DEAHC+S WGHDFRP YR+L L+ P VP++ALTATA V +DV
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDV 381
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
++SL + VLK SF+R NL YEV K + L +L+ D IVYCL ++
Sbjct: 382 LKSLRIPRAPVLKMSFDRINLKYEVIVK--TKEPLKQLQELLRDRFKDQSGIVYCLSKSE 439
Query: 271 CDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C +++ +L+ + YHAG+ K R V W + ++V AT+AFGMGID+ DVR
Sbjct: 440 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 499
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H + K++E++YQESGRAGRD L ++ + Y D R+ +L Q +N F +
Sbjct: 500 VIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAM 559
Query: 390 RSSKK 394
+KK
Sbjct: 560 AQAKK 564
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 214/346 (61%), Gaps = 13/346 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ + +L FG+ FR Q + I A L G+D +M TG GKS+CYQIPAL G+ L
Sbjct: 23 KQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTL 82
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L GI ++L+S+QT + ++ L SG +L+LLYV+PE
Sbjct: 83 VISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSG--TLKLLYVSPEKVM 140
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F + S ++ VAIDEAHCIS WGHDFRP Y +L L++ P PI+ALTAT
Sbjct: 141 TTSFFHLI----SHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTAT 196
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L LQ+P V SF+RPN+ Y + ++K + LC +
Sbjct: 197 ADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFKPM-----EQLCRFVLGQKGKS 251
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R+ + ++ L G+S AYHAGL R V + QVVVAT+AFGM
Sbjct: 252 GIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGM 311
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D
Sbjct: 312 GINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPAD 357
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/345 (41%), Positives = 213/345 (61%), Gaps = 3/345 (0%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ F +FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
D + LC++ +SFNRPNL+YEVR K +D D+ ++ I+YC
Sbjct: 262 LTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYC 321
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ ++++ L GI AYHA L + +++V W ++ QVVVATVAFGMGID+
Sbjct: 322 FSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKP 381
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
DVR V H ++ KSME +YQESGRAGRD + + +LYYG D R+
Sbjct: 382 DVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 426
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 209/340 (61%), Gaps = 3/340 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F +FR QL+ I ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+
Sbjct: 87 FKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMED 146
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K
Sbjct: 147 QLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEK 206
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KDV
Sbjct: 207 AYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQ 266
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ LC+ L +SFNRPNLFYEVR K +D D+ ++ I+YC +
Sbjct: 267 KILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQSGIIYCFSQKD 326
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
++++ L GI YHA + + ++ V W ++ QVVVATVAFGMGID+ DVR V
Sbjct: 327 SEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFV 386
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 387 IHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRI 426
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 209/340 (61%), Gaps = 3/340 (0%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F +FR QL+ I ++G++ F +MPTGGGK +CYQ+PAL G LV+ PLI+LME+
Sbjct: 87 FKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLMED 146
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K
Sbjct: 147 QLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 206
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V D
Sbjct: 207 AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQ 266
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ LC++ +SFNRPNL+YEVR K +D D+ ++ I+YC +
Sbjct: 267 KILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKD 326
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
++++ L GI AYHA L + +++V W ++ QVVVATVAFGMGID+ DVR V
Sbjct: 327 SEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFV 386
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
H ++ KSME +YQESGRAGRD + + +LYYG D R+
Sbjct: 387 IHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 426
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 214/355 (60%), Gaps = 3/355 (0%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LV+SPL
Sbjct: 76 QILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLTLVISPL 135
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGF 146
++L+E+Q++ L++ GI L++ ++ + + G LRLLYVTPE L +
Sbjct: 136 VSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPEKLAKSKRM 195
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M++L+K G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA
Sbjct: 196 MNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSN 255
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYAD--LCSVLKANGDTCAIVY 264
V DV + L + +V ++ FNR NL Y+V K +D + + ++ + I+Y
Sbjct: 256 VLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKRKFSGKTGIIY 315
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R C++L+ L A GI YHA + RS+ W+S QV+VATVAFGMGID+
Sbjct: 316 CLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDK 375
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
DVR V H ++PKS+E +YQESGRAGRD LP+ +LYY M D + ++ + Q+
Sbjct: 376 PDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSMIQQEQT 430
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 208/343 (60%), Gaps = 3/343 (0%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
K+L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LVVSP
Sbjct: 98 TKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSP 157
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG 145
LI+L+E+Q++ L+ GI L++ + + ++ + + + RLLYVTPE L +
Sbjct: 158 LISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKK 217
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M+KL+K S G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA
Sbjct: 218 MMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATS 277
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIV 263
V DV + L +Q L ++ FNR NL Y+V K D+ ++ +K + I+
Sbjct: 278 NVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKRDFAGQTGII 337
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R C++++ L + GI YHA + RS WIS + QV+VATVAFGMGID
Sbjct: 338 YCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGID 397
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ +VR V H ++PKS+E +YQESGRAGRD P+ +LYY + D
Sbjct: 398 KPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLAD 440
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/336 (44%), Positives = 212/336 (63%), Gaps = 14/336 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q + +VL RD +M TG GKS+CYQ + GI +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ I+ FL S Q+ V +D+ GK +R++Y+TPE +
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNV----LQDVKDGK--MRVIYMTPEFCSRG- 590
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S L+ + +R + L+AIDEAHCIS WGHDFR +YR L SL+ LP+VPI+ALTATA+P
Sbjct: 591 -ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASP 649
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKANG---DTC 260
+++D+ +SL L NP V +SF+RPNL+ +V K ++ D L + +G +
Sbjct: 650 SIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGA 709
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R T ++++A L GI+C YHAG+ K R V ++ VVATVAFGM
Sbjct: 710 TIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGM 769
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
GI++ D+R V H+ PK ME++YQE GRAGRD LPS
Sbjct: 770 GINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPS 805
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 214/361 (59%), Gaps = 19/361 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
LL +FG+ +FR Q +AI+ V R + C+MPTGGGKS+CYQIPAL G +V+SPL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGF 146
I+LM++QV L+E GI +++STQ+ Q +IYE L+ K + +L Y+TPE + F
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQ---EIYERLNGLKEGAYKLFYITPERLTSIEF 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAP 205
+ L+ I + LVAIDEAHCIS WGHDFRPSYR + L L D P I+ALTATA P
Sbjct: 125 IRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATP 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCAI 262
+V D+ + L +Q + + F+R NL ++V KD D Y ++ N I
Sbjct: 181 EVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEY------VQNNRHEAGI 234
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VY R D + L + YH GL D R + +++ QV+VAT AFGMGI
Sbjct: 235 VYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGI 294
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ ++R V H IPK ME++YQE+GRAGRD L S+ +L + D F++ +++ +
Sbjct: 295 DKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEK 354
Query: 383 Q 383
Q
Sbjct: 355 Q 355
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/339 (43%), Positives = 208/339 (61%), Gaps = 16/339 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVL 82
E V L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I L
Sbjct: 534 EEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGL 593
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LME+QV+ LK I FL S Q+ V T D+ GK R++YVTPE +
Sbjct: 594 VISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLT----DIKLGK--YRIVYVTPEYCS 647
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G M L+++ + + L+A+DEAHCIS WGHDFR S+RKL SL+ LP VPI+ALTAT
Sbjct: 648 --GNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTAT 705
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLC---SVLKANG 257
A+ +++D++ L L+NP + + F+RPNL+ EVR K ++L D L S + G
Sbjct: 706 ASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEG 765
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
T I+YC R +++ L +SC YHAG++ R + ++ Q V+AT+A
Sbjct: 766 PT--IIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
FGMGI++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQS 862
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 216/363 (59%), Gaps = 12/363 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+EAL L FGH FR+KQ D ++ VL G+D F LM TG GKS+CYQ+P+L + +
Sbjct: 213 QEAL-NALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTV 271
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM +QV L KGI L T Q++ ++ + + +R +Y++PE+
Sbjct: 272 VVSPLISLMNDQVTTLVSKGIDAVKLDGHST-QIE---WDQVANNMHRIRFIYMSPEMVT 327
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALT 200
+ + L R ++L+AIDEAHC+S WGHDFR SYR L+ +RN L ++P++ALT
Sbjct: 328 SQKGLELL--TSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALT 385
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLDDA--YADLCSVLKANG 257
ATA +V+ DV+ +L L+ PL+ +SF+R NL+ V KD+ +D + V +
Sbjct: 386 ATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHF 445
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC + D+++ L G+ A YHAGL R D++ + +VATVA
Sbjct: 446 GGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVA 505
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H+ P ++E++YQE GRAGRD PS +++ D ++F L +
Sbjct: 506 FGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNS 565
Query: 378 QSK 380
Q K
Sbjct: 566 QQK 568
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 207/347 (59%), Gaps = 17/347 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ + L S Q+ I D+ GK R++Y+TPE + G
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS----KNILGDVKLGK--YRVIYITPEFCS--G 612
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+++ S + L+A+DEAHCIS WGHDFR S+R L SL+ LP VP++AL+ATA+
Sbjct: 613 NLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASS 672
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLC----SVLKANGDT 259
+++D++ L L++P + + F+RPNL+ EV K ++L D L S + G T
Sbjct: 673 SIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPT 732
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++++A L ++C YHAG+ R V ++ Q VVATVAFG
Sbjct: 733 --IIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFG 790
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
MGI++ D+R V H+ PK ME++YQE GRAGRD L S L + D
Sbjct: 791 MGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPAD 837
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 216/351 (61%), Gaps = 10/351 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
+G+ FR +Q + I V++G D ++ T GKS+C+QIPAL +++SPLI+LME+
Sbjct: 25 YGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLMED 84
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
Q + L++ GI+ +S ++ K ++ +D+ K + +YV+PE + + KL+
Sbjct: 85 QRLILEKLGISSCCYNSN--VENKAQMRKDIMQFK--YKFIYVSPESVVHLKDLIVKLED 140
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++L+AIDEAHCIS++G DFR +YR+++ + LP+VPILALTATA V KD+
Sbjct: 141 FQG---ISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAKDIC 197
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
+ L L+ +K+SF+RPNL+ EVR K + D+ ++ + I+YCL +
Sbjct: 198 KVLQLKTNEPIKASFDRPNLYLEVRTKS--KNPANDIVPIINKYPNQSVIIYCLTKKETQ 255
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+++ L+ + C YHAGL+++ ++ ++I+++ ++VVAT+AFGMGI++ DVR+V H
Sbjct: 256 KIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIH 315
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ PK++E +YQE GRAGRD S +Y D +S+N + N Q
Sbjct: 316 YGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQNNNPNYQ 366
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 213/392 (54%), Gaps = 25/392 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L FG F+ Q D I+++LSG+D ++PTGGGKS+CYQ+P G+VL+VS
Sbjct: 4 LQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVS 63
Query: 86 PLIALMENQVIGLKEKGIA-GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PL++LME+QV LK +G L+S Q + + E + K LY++PE +P
Sbjct: 64 PLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYK----FLYLSPEALQSP 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ KLK + ++L IDEAHCIS WGHDFRP Y KL LR L P+LALTATA
Sbjct: 120 YVLEKLKSVP----ISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATAT 175
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA-DLCSVLKANGDTCAIV 263
+ +DVM L LQ+ + +S NRPN+ +R ++ D A D L N IV
Sbjct: 176 KETLQDVMNLLELQHAVRHLNSVNRPNI--ALRVENAADTAEKIDRVIQLVENLQGPGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YC R EL+ + + S A YH GL R + +I ++ V+ T AFGMG+
Sbjct: 234 YCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGV 293
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ D+R V HF++P++ EAF QE GRAGRD PS S+L D E I+
Sbjct: 294 DKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQM------ 347
Query: 383 QSFSTRERSSKKSISDFSQVLDVAGKRFSRVL 414
E + + I+D +VL+ +R R L
Sbjct: 348 ------ESVTAEEIADVIRVLEKTEERDERRL 373
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 201/354 (56%), Gaps = 27/354 (7%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L KLL +G+ FRD QL AI+ +L G ++PTG GKS+CYQIPA+ PGI LV
Sbjct: 255 ENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLV 314
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM +Q+ L I G LSS+Q + T+ L G +++L+V+PE
Sbjct: 315 VSPLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEG--IIKVLFVSPERLLN 371
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL--SSLRNYLPDVPILALTA 201
F+S + S ++LV +DEAHC+S W H+FRPSY +L S L + L ILA+TA
Sbjct: 372 VEFLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTA 428
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV------RYKDLL----DDAYADLCS 251
TA + VM SL + + +++ S R N V R KDLL Y ++ S
Sbjct: 429 TATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRS 488
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+ IVYC + D +S YL I+ YH+GL K R + + + S++ +V
Sbjct: 489 I---------IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRV 539
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
VVATVAFGMG+D+ DV V HF++P SME + QE GRAGRD S L+Y D
Sbjct: 540 VVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDND 593
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 15/368 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ ++++L + LR +G+ FR Q + I +L+ RDC ++PTGGGKS+C+Q+PAL G
Sbjct: 1 MADRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ LVVSPL+ALME+QV L+ + + L S + + G+ L+LLY++PE
Sbjct: 61 LTLVVSPLVALMEDQVQSLRRQNLPAACLHS--QLSRPERKQVLYQLGQQQLKLLYLSPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVP 195
+ + L++ + L + +DEAHC+ WG FRP+YR+L +LR L +P
Sbjct: 119 TLLSEPVWNLLRQPQVK--LQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIP 176
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
+ A TATA + Q ++E L L++P + S +RP L +V+ L L
Sbjct: 177 LAAFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLK 236
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ ++Y RT L+ +L G AYH GL R + W++ + VV T
Sbjct: 237 HLQESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCT 296
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL-------YYGMDDRR 368
AFG+GID+ D R V H+ P + + QE GRAGRD P++ L + DR+
Sbjct: 297 NAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDRQ 356
Query: 369 RMEFILSK 376
++ LS+
Sbjct: 357 LRQYFLSQ 364
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 171/349 (48%), Gaps = 26/349 (7%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI 88
GH FR Q A+ +LSG ++PTG GKS+CYQ+PAL P + LVVSPL+
Sbjct: 475 QLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLL 534
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV GL + + S T + + + + + + + + +L +TPE G +
Sbjct: 535 SLMDDQVSGLP-PCLKAACIHSGMTRKQRESVLQKIRAAQ--VHVLMLTPEALVGAGGLP 591
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKV 207
++ + IDEAHC+S W H+FRP Y R LR + L LTATA +
Sbjct: 592 PAAQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRT 648
Query: 208 QKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
DV + L + L P NL V D A L + I+YC
Sbjct: 649 ASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCN 708
Query: 267 ERTTCDELSAYL----------SAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
R + ++A L +GG + AYHAG+ + R V ++ + +VV
Sbjct: 709 RREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVV 768
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
VATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 769 VATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 170/353 (48%), Gaps = 31/353 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
G+ FR Q AI +LSG ++PTG GKS+CYQ+PAL P + LVVSPL++
Sbjct: 493 LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS 552
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-----TATP 144
LM++QV L + L S T + + + + + + + + +L V+PE P
Sbjct: 553 LMDDQVSDLP-SCLKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGARGP 609
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATA 203
G + + ++ + IDE HC+S W H+FRP Y R LR ++ L LTATA
Sbjct: 610 GSLPQAAQLPP---IAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
+DV + L + L S N P NL V D A L + I
Sbjct: 667 TRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVI 726
Query: 263 VYCL-ERT---------TCDELSAYLSAGGIS----CAAYHAGLNDKARSSVLDDWISSR 308
+YC ER TC + G AYHAG++ + R V ++
Sbjct: 727 IYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGH 786
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
++VVATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 787 LRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 17/220 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG + R Q +A+ ++ +DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 159 ILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 218
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM +Q + L ++ FL S Q+ I E G +++YV PE +
Sbjct: 219 SLMHDQCLKLSRHKVSACFLGSG---QLDNCIEEKAMQG--MYQIIYVCPETVVR--LIK 271
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLP--------DVPILAL 199
L+K+ + L AIDEAHC+S WGHDFRP YRKLS LR N+ DVPI+AL
Sbjct: 272 PLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMAL 331
Query: 200 TATAAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRY 238
TATA VQ+D++ESL L + ++ +SF RPNL + V++
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKH 371
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+Y R ++ YL G+ AAY+A L K V D+ ++ QVVVAT+AFGM
Sbjct: 500 TIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGM 559
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+K+VR + H+ +S+EA+YQE+GRAGRD ++ +LY D R +L +SK
Sbjct: 560 GIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYA---DLSRAPTLLPSRRSK 616
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 32/348 (9%)
Query: 37 AQFRD-KQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-----IVLVV 84
A+FR KQ ++ L R + ++PTGGGKS+ + IPAL + PG + LV+
Sbjct: 1369 AKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVL 1428
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
P+++L ++ ++ + EKG+ L + + L++ P L +L T E T
Sbjct: 1429 VPMMSLRQDMMLRVNEKGL----LVCSGNWTAFKDVRLTLETQLPDLFIL--TYESALTN 1482
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ + + + G L V IDEAH + + G +R + + S L P+ L+AT
Sbjct: 1483 SGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APLHLLSATFP 1539
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN----GDTC 260
+++ ++ C ++ ++S R N+FY + D + DL +++K GD
Sbjct: 1540 RQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-TEFLLDLRTLMKRTKVFEGDGR 1598
Query: 261 AIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDW--ISSRKQVVVA 314
AI++C + + + L + Y ++D+ R D + + + ++++A
Sbjct: 1599 AIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1658
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
T AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1659 TKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1706
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 175/356 (49%), Gaps = 33/356 (9%)
Query: 30 LRWHFG-HAQFRD-KQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-- 79
L ++G A+FR KQ ++ L R + ++PTGGGKS+ + IPAL + PG
Sbjct: 1180 LSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKV 1239
Query: 80 ---IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ LV+ P+++L ++ ++ + EKG+ L + + L++ P L +L
Sbjct: 1240 MNMVTLVLVPMMSLRQDMMLRVNEKGL----LVCSGNWTAFKDVRLTLETQLPDLFIL-- 1293
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
T E T + + + + G L V IDEAH + + G +R + + S L P+
Sbjct: 1294 TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APL 1350
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
L+AT +++ ++ C ++ ++S R N+FY + D + DL +++K
Sbjct: 1351 HLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-TEFLLDLRTLMKRT 1409
Query: 257 ----GDTCAIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDW--IS 306
GD AI++C + + + L + Y ++D+ R D + +
Sbjct: 1410 KVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNAN 1469
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+ ++++AT AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1525
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 42/323 (13%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPG-----------IVLVVSPLIALMENQVIGLK 99
LSGRD + TG GK++ + +PAL IVLV++P L+ ++
Sbjct: 122 LSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELV------MQ 175
Query: 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRG- 157
K + EF T +Y S +P +R L+ E+ ATPG +L +H +G
Sbjct: 176 IKKVVDEFCGMFNLRS--TAVYGGASS-QPQIRALHEGAEVVIATPG---RLIDLHDQGH 229
Query: 158 ----LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + +DEA + G F P RK+ N + L +AT P+ + + E
Sbjct: 230 APLSRVTFLVLDEADRMLDMG--FEPQLRKIIPKTN--ANRQTLMWSATW-PREVRGLAE 284
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-----DAYADLCSVLKANGDTCAIVYCLER 268
S + ++ L + K +++ + L VL IV+C +
Sbjct: 285 SYMNE---YIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVFCNMK 341
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
TCD+L L+ G AA H + R VLDD+ S R+ +++AT G G+D DV+
Sbjct: 342 RTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVK 401
Query: 329 LVCHFNIPKSMEAFYQESGRAGR 351
LV +F+ P S E + GR R
Sbjct: 402 LVINFDFPGSCEDYVHRIGRTAR 424
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 23/315 (7%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 149 LSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKECS 208
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVA 163
+F S++ T +Y + + L L ATPG + + +I L + +
Sbjct: 209 KFGRSSRIRN--TCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLV 266
Query: 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--- 220
+DEA + G F P RK+ + PD L +AT +VQ+ + L +P
Sbjct: 267 LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LARDYLHDPIQV 320
Query: 221 ----LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276
L L +S L V D D L + + D+ I++ + TCDE+++
Sbjct: 321 NIGSLELAASHTITQLVEVVSDFDKRDRLVKHL-EIASKDKDSKIIIFASTKRTCDEITS 379
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
YL G A H + R VL+++ + R ++VAT GID K + V ++++P
Sbjct: 380 YLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDVAARGIDVKGINFVINYDMP 439
Query: 337 KSMEAFYQESGRAGR 351
++E + GR GR
Sbjct: 440 GNIEDYVHRIGRTGR 454
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 149/332 (44%), Gaps = 23/332 (6%)
Query: 50 VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIA 104
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 144 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC 203
Query: 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLV 162
+F S++ T +Y + G+ L+ + ATPG + + + L + +
Sbjct: 204 SKFGKSSRIRN--TCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYL 261
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP-- 220
+DEA + G F P RK+ + PD L +AT +VQ+ + L +P
Sbjct: 262 VLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LARDYLNDPIQ 315
Query: 221 -----LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275
L L +S N L V + D L + + + ++ +++ + TCDE++
Sbjct: 316 VQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQ-DKESKILIFASTKRTCDEIT 374
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
+YL G A H + + R VL+++ + ++VAT GID K + V ++++
Sbjct: 375 SYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDM 434
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
P ++E + GR GR ++ ++ D++
Sbjct: 435 PGNIEDYVHRIGRTGRAGATGTAISFFTEDNK 466
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP2 PE=3 SV=1
Length = 554
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 21/315 (6%)
Query: 50 VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIA 104
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 147 ALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKEC 206
Query: 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLV 162
+F +S++ T +Y + + L L ATPG + + +I L + +
Sbjct: 207 SKFGASSRIR--NTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYL 264
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 222
+DEA + G F P RK+ + PD L +AT +V++ + S L +P+
Sbjct: 265 VLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVKQ--LASDYLHDPIQ 318
Query: 223 LK------SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276
++ S+ + EV D A + D+ I++ + TCDE+++
Sbjct: 319 VQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITS 378
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
YL G A H R VL ++ S R ++VAT GID K + V ++++P
Sbjct: 379 YLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMP 438
Query: 337 KSMEAFYQESGRAGR 351
++E + GR GR
Sbjct: 439 GNIEDYVHRIGRTGR 453
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP2 PE=3 SV=1
Length = 540
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 148/345 (42%), Gaps = 34/345 (9%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--------LAKPG---IVLVVSPLIALM 91
Q A LSGRD + TG GK++ + +PA L PG IVL+++P
Sbjct: 137 QCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAP----- 191
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKL 150
+ + ++ + A +F S++ T IY G P +R L E+ ATPG + +
Sbjct: 192 -TRELAVQIQTEATKFGQSSRIR--NTAIYGGAPKG-PQIRDLQRGVEICVATPGRLIDM 247
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ L + + +DEA + G F P RK+ S PD L +AT +VQ
Sbjct: 248 LETGKTNLKRVTYLVMDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLLFSATWPKEVQ 303
Query: 209 KDVMESL--CLQ---NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ M+ L +Q L L ++ N D + L + + NG ++
Sbjct: 304 RLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKV--LI 361
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+ + D+L+ +L G A H R VL ++ S R +++AT G+D
Sbjct: 362 FVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLD 421
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
+D+ V +++ P + E + GR GR S Y+ MD+ +
Sbjct: 422 VRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSK 466
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP2 PE=3 SV=1
Length = 540
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 148/345 (42%), Gaps = 34/345 (9%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--------LAKPG---IVLVVSPLIALM 91
Q A LSGRD + TG GK++ + +PA L PG IVL+++P
Sbjct: 137 QCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAP----- 191
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKL 150
+ + ++ + A +F S++ T IY G P +R L E+ ATPG + +
Sbjct: 192 -TRELAVQIQTEATKFGQSSRIR--NTAIYGGAPKG-PQIRDLQRGVEICVATPGRLIDM 247
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ L + + +DEA + G F P RK+ S PD L +AT +VQ
Sbjct: 248 LETGKTNLKRVTYLVMDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLLFSATWPKEVQ 303
Query: 209 KDVMESL--CLQ---NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ M+ L +Q L L ++ N D + L + + NG ++
Sbjct: 304 RLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKV--LI 361
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+ + D+L+ +L G A H R VL ++ S R +++AT G+D
Sbjct: 362 FVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLD 421
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
+D+ V +++ P + E + GR GR S Y+ MD+ +
Sbjct: 422 VRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSK 466
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 170/359 (47%), Gaps = 28/359 (7%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
+ GRD + TG GK++ Y +PA+ A+P + P++ L + + ++ + A
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 106 EFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNL 161
+F SS++ +KT IY + G P +R L E+ ATPG + + + ++ L +
Sbjct: 194 KFGSSSK---IKTTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTY 249
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP- 220
+ +DEA + G D P RK+ S + PD L +AT +V++ + L NP
Sbjct: 250 LVLDEADRMLDMGFD--PQIRKIVS--HIRPDRQTLYWSATWPKEVEQ--LSKKFLYNPY 303
Query: 221 -LVLKSSFNRPNLFYEVRYKDLLDDA--YADLCSVLKANGDTCAIVYCLE-RTTCDELSA 276
+++ SS + N + D++ ++ Y L +L+ D I+ L+ + CD+++
Sbjct: 304 KVIIGSSDLKANRAIR-QIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR 362
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
L G + H + R VL ++ S + ++ AT G+D KDV+ V +++ P
Sbjct: 363 QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP 422
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSKNQSKNSQSFSTRERSS 392
S+E + GR GR + ++ + + R + IL + K S ++ RS+
Sbjct: 423 GSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRST 481
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=PRP5 PE=3 SV=1
Length = 994
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 158/368 (42%), Gaps = 64/368 (17%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-------- 75
E+++ +++ G A+ Q AI VLSGRD + TG GK++ Y +P +
Sbjct: 396 ESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLF 455
Query: 76 AKPG---IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK-------TKIYEDLD 125
KPG I LV+SP L I E L + TM +K + I +
Sbjct: 456 PKPGEGPIGLVLSPTRELALQ---------IEKEILKFSSTMDLKVCCCYGGSNIENQIS 506
Query: 126 SGKPSLRLLYVTPE-----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
K + ++ TP L A G ++ L++ V +DEA + G F P
Sbjct: 507 ELKRGVNVIVATPGRLIDLLAANGGRITTLRRT------TFVVLDEADRMFDMG--FEPQ 558
Query: 181 YRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------VLKSSFNRPN 231
+K+ + +R PD + +AT K+++ + L NP+ V+ S ++
Sbjct: 559 IQKIFTQIR---PDKQTVLFSATFPRKLEQ--LAKKVLHNPIEIIVGGVSVVASEISQEI 613
Query: 232 LFYE-----VRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285
+ +E + +K L+D + + K G +V+ ++T D+L + L I C
Sbjct: 614 ILFEDTDQLMNHKIQKLEDILSRFFDLGKNTGK--VLVFVEKQTDADKLVSVLLKKAIPC 671
Query: 286 AAYHAGLNDKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343
A H G + R + ++ + V++AT G+D +++ LV +F P +E +
Sbjct: 672 IAIHGGKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYV 731
Query: 344 QESGRAGR 351
GR GR
Sbjct: 732 HRVGRTGR 739
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP2 PE=3 SV=2
Length = 562
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 25/328 (7%)
Query: 50 VLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIA 104
LSGRD + TG GK++ Y +P++ A+P + P++ L + + ++ +
Sbjct: 161 ALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTEC 220
Query: 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGL--LNL 161
+F S++ T +Y G P +R L E+ ATPG + + + L +
Sbjct: 221 SKFGKSSRIR--NTCVYGGAPKG-PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTY 277
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP- 220
+ +DEA + G F P RK+ + PD L +AT +VQ+ + L +P
Sbjct: 278 LVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LTRDYLNDPI 331
Query: 221 ------LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 274
L L +S L + D L S L D +V+ + TCDE+
Sbjct: 332 QVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEK-DNKILVFASTKRTCDEI 390
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ YL + G A H R VLD++ + ++VAT GID K + V +++
Sbjct: 391 TTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYD 450
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+P ++E + GR GR ++ ++
Sbjct: 451 MPGNIEDYVHRIGRTGRGGASGTAISFF 478
>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP2 PE=3 SV=2
Length = 552
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 140/340 (41%), Gaps = 36/340 (10%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--------LAKPG---IVLVVSPLIALM 91
Q A LSGRD + TG GK++ + +PA L KPG I L+++P L
Sbjct: 157 QSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPIALILAPTRELA 216
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGF---M 147
+ G + + +Y + G P +R L E+ ATPG M
Sbjct: 217 NQIQVECNRFGGSSRLRTCA--------VYGGVPKG-PQIRDLQRGAEICIATPGRLIDM 267
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
K + R + LV +DEA + G F P RK+ L+ PD L +AT +V
Sbjct: 268 VDAGKTNLRRVTYLV-MDEADRMLDMG--FEPQIRKI--LQQIRPDRQTLMFSATWPKEV 322
Query: 208 QK---DVMESLCLQN--PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
Q+ D + + N L ++ N + + L ++ NG I
Sbjct: 323 QRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKV--I 380
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
++ + D+L+ +L G A H + R VL ++ S R ++VAT G+
Sbjct: 381 IFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGL 440
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
D KD+ V +++ P + E + + GR GR + Y+
Sbjct: 441 DVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYF 480
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP2 PE=3 SV=1
Length = 552
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 25/339 (7%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
L+GRD + TG GK++ Y +PA+ A+P + P++ L + + ++ +
Sbjct: 151 LTGRDVIGIASTGSGKTLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQECS 210
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL---- 161
+F S++ T +Y + G+ L + ATPG +L + G NL
Sbjct: 211 KFGKSSKIR--NTCVYGGVPRGQQIRDLARGVEIVIATPG---RLLDMLESGKTNLRRVT 265
Query: 162 -VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ-- 218
+ +DEA + G F P RK+ + PD L +AT +VQ+ + L Q
Sbjct: 266 YLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQ 321
Query: 219 ---NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275
L L +S N + + D L +V++ C I +R D+++
Sbjct: 322 VNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRV-ADDIT 380
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
+L G A H + R VL+++ + ++VAT GID K + V +++
Sbjct: 381 KFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVATDVASRGIDVKGINFVINYDY 440
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
P + E + GR GR + Y+ D+R++ +L
Sbjct: 441 PSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLL 479
>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium
discoideum GN=ddx6 PE=3 SV=1
Length = 423
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 150/349 (42%), Gaps = 40/349 (11%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH K L++ + + G+ + Q AI L+GRD G GK+ + IPAL K
Sbjct: 54 LHLKRDLLRGI-FEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTD 112
Query: 80 --------IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
++LV + +AL +QV K + + ++ST +K I +
Sbjct: 113 PTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDI----------M 162
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
RL L ATPG + L + + L N + +DEA + S +F+P +L N
Sbjct: 163 RLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLS--QEFQPLVEQLI---N 217
Query: 190 YLPDVPILALTATAAPKVQKDVME-------SLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242
+LP + L + P K E + L L LK + F E R K
Sbjct: 218 FLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKG-VTQYYAFVEERQKI-- 274
Query: 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
L S L+ N +I++C + L+ ++ G SC HA + R+ V
Sbjct: 275 -HCLNTLFSKLQINQ---SIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFH 330
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
D+ + + +V++ F GID +DV +V +F+ PK E + GR+GR
Sbjct: 331 DFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGR 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,879,461
Number of Sequences: 539616
Number of extensions: 8060620
Number of successful extensions: 22164
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 20012
Number of HSP's gapped (non-prelim): 1808
length of query: 529
length of database: 191,569,459
effective HSP length: 122
effective length of query: 407
effective length of database: 125,736,307
effective search space: 51174676949
effective search space used: 51174676949
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)