Query 009675
Match_columns 529
No_of_seqs 367 out of 3028
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 15:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 9.9E-89 2.1E-93 711.3 41.0 405 25-471 4-411 (590)
2 KOG0352 ATP-dependent DNA heli 100.0 2E-88 4.3E-93 660.7 31.2 427 23-477 4-449 (641)
3 PLN03137 ATP-dependent DNA hel 100.0 2.3E-81 5E-86 689.3 46.8 418 19-463 441-870 (1195)
4 KOG0351 ATP-dependent DNA heli 100.0 3E-82 6.4E-87 697.5 33.4 448 23-504 249-705 (941)
5 KOG0353 ATP-dependent DNA heli 100.0 8.3E-80 1.8E-84 592.4 28.7 406 17-462 73-528 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 2.8E-73 6.2E-78 620.7 47.9 406 20-470 7-415 (607)
7 TIGR00614 recQ_fam ATP-depende 100.0 4.7E-73 1E-77 603.6 47.2 371 29-415 2-377 (470)
8 TIGR01389 recQ ATP-dependent D 100.0 3.5E-73 7.7E-78 621.2 46.6 393 27-463 2-397 (591)
9 PRK04837 ATP-dependent RNA hel 100.0 3.9E-53 8.4E-58 446.1 35.8 343 15-378 8-375 (423)
10 KOG0331 ATP-dependent RNA heli 100.0 1.2E-53 2.5E-58 439.6 30.8 344 16-380 92-463 (519)
11 KOG0330 ATP-dependent RNA heli 100.0 9.5E-54 2E-58 414.5 25.8 353 8-381 54-423 (476)
12 PTZ00110 helicase; Provisional 100.0 4.4E-52 9.5E-57 448.2 39.6 346 15-379 130-498 (545)
13 PRK11776 ATP-dependent RNA hel 100.0 9.2E-52 2E-56 440.3 37.7 343 15-378 4-362 (460)
14 PRK04537 ATP-dependent RNA hel 100.0 1.6E-51 3.4E-56 445.4 38.5 345 16-378 10-377 (572)
15 PRK10590 ATP-dependent RNA hel 100.0 1.9E-51 4.1E-56 436.5 37.1 343 16-377 2-364 (456)
16 PRK11192 ATP-dependent RNA hel 100.0 5.9E-51 1.3E-55 431.3 39.1 342 16-375 2-362 (434)
17 PLN00206 DEAD-box ATP-dependen 100.0 4.2E-51 9.1E-56 439.2 37.4 343 15-378 121-488 (518)
18 COG0513 SrmB Superfamily II DN 100.0 4.3E-51 9.3E-56 436.6 36.4 346 14-379 28-395 (513)
19 PRK01297 ATP-dependent RNA hel 100.0 6.6E-51 1.4E-55 434.9 37.3 349 11-378 83-455 (475)
20 PRK11634 ATP-dependent RNA hel 100.0 1.5E-50 3.2E-55 440.3 40.2 345 15-379 6-366 (629)
21 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-49 2.8E-54 397.9 30.3 337 16-373 246-632 (673)
22 PTZ00424 helicase 45; Provisio 100.0 6.2E-49 1.3E-53 412.1 36.9 345 14-377 27-386 (401)
23 KOG0328 Predicted ATP-dependen 100.0 2.2E-49 4.7E-54 369.2 26.1 349 9-377 21-385 (400)
24 KOG0338 ATP-dependent RNA heli 100.0 9.8E-50 2.1E-54 397.3 24.2 343 14-377 180-545 (691)
25 KOG0345 ATP-dependent RNA heli 100.0 1.9E-48 4E-53 385.6 30.1 333 21-375 12-374 (567)
26 KOG0340 ATP-dependent RNA heli 100.0 1.6E-48 3.4E-53 374.1 26.6 358 11-381 3-377 (442)
27 TIGR03817 DECH_helic helicase/ 100.0 9.3E-48 2E-52 426.1 35.8 342 19-373 18-396 (742)
28 KOG0336 ATP-dependent RNA heli 100.0 9.7E-48 2.1E-52 373.8 25.1 351 3-378 213-585 (629)
29 KOG0342 ATP-dependent RNA heli 100.0 4.1E-47 8.8E-52 378.6 27.2 343 11-375 78-447 (543)
30 KOG0348 ATP-dependent RNA heli 100.0 2E-46 4.4E-51 375.6 26.8 350 11-376 132-565 (708)
31 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-46 3.7E-51 377.2 26.3 343 13-376 67-433 (758)
32 KOG0346 RNA helicase [RNA proc 100.0 6E-46 1.3E-50 364.7 25.9 349 6-376 10-424 (569)
33 KOG0326 ATP-dependent RNA heli 100.0 7.5E-47 1.6E-51 357.5 16.6 345 14-381 84-445 (459)
34 KOG0335 ATP-dependent RNA heli 100.0 3.4E-45 7.4E-50 370.9 24.5 343 16-374 75-453 (482)
35 KOG0347 RNA helicase [RNA proc 100.0 2.6E-45 5.6E-50 368.7 21.0 349 17-381 183-586 (731)
36 KOG0332 ATP-dependent RNA heli 100.0 1.7E-43 3.6E-48 341.4 26.4 352 7-380 82-459 (477)
37 KOG0341 DEAD-box protein abstr 100.0 1.1E-44 2.3E-49 350.5 15.0 331 15-367 170-530 (610)
38 PRK14701 reverse gyrase; Provi 100.0 2.8E-42 6.1E-47 401.9 31.9 333 23-376 65-467 (1638)
39 TIGR00580 mfd transcription-re 100.0 3.3E-41 7.1E-46 377.4 38.6 320 20-365 434-770 (926)
40 KOG0339 ATP-dependent RNA heli 100.0 1.2E-41 2.6E-46 339.1 30.0 348 15-381 223-591 (731)
41 PRK13767 ATP-dependent helicas 100.0 1.8E-41 4E-46 382.9 35.2 325 21-363 17-396 (876)
42 PRK02362 ski2-like helicase; P 100.0 2.4E-41 5.2E-46 378.3 33.3 329 16-366 2-398 (737)
43 KOG0334 RNA helicase [RNA proc 100.0 1.7E-41 3.6E-46 366.0 27.0 350 3-377 359-732 (997)
44 PRK10917 ATP-dependent DNA hel 100.0 3.6E-40 7.7E-45 364.1 37.8 316 23-363 247-587 (681)
45 TIGR00643 recG ATP-dependent D 100.0 1.7E-39 3.7E-44 356.4 37.5 314 24-362 222-563 (630)
46 PRK10689 transcription-repair 100.0 2.3E-39 5E-44 369.8 38.0 319 20-364 583-918 (1147)
47 COG1201 Lhr Lhr-like helicases 100.0 1.8E-39 3.9E-44 352.1 34.4 324 20-364 6-361 (814)
48 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-40 2.6E-45 332.1 21.2 339 27-379 149-554 (620)
49 KOG4284 DEAD box protein [Tran 100.0 5.2E-41 1.1E-45 342.4 18.9 340 14-373 24-388 (980)
50 KOG0344 ATP-dependent RNA heli 100.0 4.6E-40 1E-44 335.4 24.9 342 20-377 141-507 (593)
51 PRK00254 ski2-like helicase; P 100.0 1.5E-38 3.4E-43 354.8 35.8 321 17-366 3-389 (720)
52 KOG0327 Translation initiation 100.0 6.6E-40 1.4E-44 319.3 21.0 344 12-377 23-382 (397)
53 PRK01172 ski2-like helicase; P 100.0 1.4E-37 3E-42 345.6 32.5 335 16-375 2-389 (674)
54 KOG0337 ATP-dependent RNA heli 100.0 1.5E-38 3.2E-43 311.4 17.3 342 14-376 20-379 (529)
55 PRK09401 reverse gyrase; Revie 100.0 2.1E-36 4.5E-41 346.3 31.7 306 24-350 67-429 (1176)
56 PRK09751 putative ATP-dependen 100.0 1.2E-36 2.7E-41 349.1 29.5 291 58-363 1-383 (1490)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9E-36 1.9E-40 325.1 29.8 317 25-362 3-388 (844)
58 TIGR01587 cas3_core CRISPR-ass 100.0 7.2E-36 1.6E-40 308.5 26.1 304 55-366 1-337 (358)
59 PRK12898 secA preprotein trans 100.0 7.2E-35 1.6E-39 311.7 33.6 327 26-369 92-590 (656)
60 TIGR03158 cas3_cyano CRISPR-as 100.0 5.3E-35 1.1E-39 300.2 31.0 293 42-350 1-357 (357)
61 PHA02653 RNA helicase NPH-II; 100.0 1.8E-34 4E-39 313.2 30.7 299 42-370 168-519 (675)
62 PRK09200 preprotein translocas 100.0 1E-33 2.2E-38 308.9 32.5 326 26-368 67-544 (790)
63 COG1111 MPH1 ERCC4-like helica 100.0 2.2E-33 4.7E-38 282.7 31.4 317 35-369 12-485 (542)
64 TIGR03714 secA2 accessory Sec 100.0 6.5E-33 1.4E-37 299.9 36.0 323 27-368 60-540 (762)
65 COG1202 Superfamily II helicas 100.0 2.7E-34 6E-39 290.6 21.8 330 18-365 197-553 (830)
66 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-33 2.3E-38 303.2 27.9 298 37-366 113-453 (501)
67 COG1205 Distinct helicase fami 100.0 4.2E-33 9.2E-38 310.4 30.7 334 23-365 56-422 (851)
68 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.9E-33 8.5E-38 309.5 29.9 304 43-370 7-341 (819)
69 PRK11664 ATP-dependent RNA hel 100.0 2.4E-33 5.2E-38 311.9 26.7 298 44-369 11-343 (812)
70 TIGR00963 secA preprotein tran 100.0 3.5E-32 7.5E-37 292.5 32.7 325 26-368 45-520 (745)
71 TIGR01054 rgy reverse gyrase. 100.0 3.6E-32 7.7E-37 312.0 32.0 293 24-337 65-409 (1171)
72 PRK13766 Hef nuclease; Provisi 100.0 1.4E-31 3E-36 302.6 35.4 314 36-367 13-481 (773)
73 PRK05580 primosome assembly pr 100.0 8.2E-31 1.8E-35 288.7 35.2 318 38-373 144-557 (679)
74 COG1204 Superfamily II helicas 100.0 3E-31 6.4E-36 291.8 27.1 320 20-362 14-405 (766)
75 TIGR00603 rad25 DNA repair hel 100.0 8.6E-31 1.9E-35 283.5 28.6 302 38-367 255-609 (732)
76 KOG0354 DEAD-box like helicase 100.0 3.5E-31 7.7E-36 281.2 23.9 315 35-366 59-530 (746)
77 TIGR00595 priA primosomal prot 100.0 2.4E-30 5.2E-35 275.6 28.7 292 57-366 1-383 (505)
78 COG1200 RecG RecG-like helicas 100.0 4.5E-29 9.8E-34 261.6 34.2 325 17-366 242-592 (677)
79 PRK04914 ATP-dependent helicas 100.0 1.8E-29 3.9E-34 282.0 33.3 317 38-365 152-603 (956)
80 PRK11131 ATP-dependent RNA hel 100.0 7.9E-30 1.7E-34 288.5 28.1 298 42-369 78-415 (1294)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 3.2E-29 7E-34 268.9 29.8 330 31-377 103-503 (1230)
82 KOG0329 ATP-dependent RNA heli 100.0 1.1E-30 2.3E-35 240.9 10.3 296 15-366 42-356 (387)
83 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-28 3E-33 258.9 27.0 295 37-357 35-382 (442)
84 PRK12906 secA preprotein trans 100.0 2.1E-28 4.6E-33 265.5 27.7 325 26-367 69-555 (796)
85 COG1197 Mfd Transcription-repa 100.0 1.6E-27 3.4E-32 262.7 34.0 323 17-365 574-913 (1139)
86 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.1E-28 1.1E-32 274.9 26.1 300 44-369 73-408 (1283)
87 KOG0349 Putative DEAD-box RNA 100.0 6E-29 1.3E-33 244.2 14.7 273 79-368 287-618 (725)
88 PRK12904 preprotein translocas 100.0 1.7E-26 3.7E-31 251.8 31.2 325 26-368 70-576 (830)
89 PRK13104 secA preprotein trans 100.0 4.1E-26 8.9E-31 248.9 31.5 325 26-368 71-590 (896)
90 PRK09694 helicase Cas3; Provis 99.9 7.3E-26 1.6E-30 251.7 28.4 309 34-354 282-664 (878)
91 KOG0947 Cytoplasmic exosomal R 99.9 1.8E-25 3.8E-30 237.8 28.4 321 28-377 288-737 (1248)
92 KOG0951 RNA helicase BRR2, DEA 99.9 1.9E-25 4E-30 242.7 25.1 328 33-376 304-713 (1674)
93 PRK13107 preprotein translocas 99.9 1.8E-24 3.9E-29 235.4 30.1 324 26-367 71-593 (908)
94 KOG0950 DNA polymerase theta/e 99.9 1.4E-24 3E-29 232.7 23.3 340 20-379 206-625 (1008)
95 PRK11448 hsdR type I restricti 99.9 2.9E-24 6.2E-29 245.4 27.4 304 38-353 413-801 (1123)
96 COG4581 Superfamily II RNA hel 99.9 3.9E-24 8.6E-29 235.9 22.8 307 32-361 114-533 (1041)
97 PRK12899 secA preprotein trans 99.9 5.2E-23 1.1E-27 224.4 30.0 123 243-368 551-684 (970)
98 PLN03142 Probable chromatin-re 99.9 1.2E-22 2.6E-27 228.2 31.4 308 38-362 169-594 (1033)
99 KOG0948 Nuclear exosomal RNA h 99.9 3E-24 6.4E-29 223.5 17.0 319 34-378 126-553 (1041)
100 PRK12900 secA preprotein trans 99.9 1.5E-22 3.3E-27 221.2 28.6 124 243-368 581-714 (1025)
101 COG4098 comFA Superfamily II D 99.9 1.3E-22 2.8E-27 195.3 24.6 295 38-366 97-416 (441)
102 COG1110 Reverse gyrase [DNA re 99.9 1.7E-22 3.6E-27 217.8 27.4 292 24-337 69-417 (1187)
103 COG1643 HrpA HrpA-like helicas 99.9 7.6E-23 1.7E-27 224.5 20.9 301 41-368 53-390 (845)
104 PRK12326 preprotein translocas 99.9 3.3E-21 7.2E-26 205.5 32.1 326 26-369 67-551 (764)
105 KOG0922 DEAH-box RNA helicase 99.9 1.2E-22 2.6E-27 211.4 20.7 298 43-369 56-394 (674)
106 COG1198 PriA Primosomal protei 99.9 1.4E-21 3.1E-26 211.6 28.5 323 38-375 198-613 (730)
107 cd00268 DEADc DEAD-box helicas 99.9 4.8E-22 1E-26 188.6 18.4 182 17-215 1-196 (203)
108 COG1203 CRISPR-associated heli 99.9 9.6E-22 2.1E-26 219.0 23.7 312 39-364 196-549 (733)
109 TIGR00631 uvrb excinuclease AB 99.9 7.8E-21 1.7E-25 207.5 29.9 128 245-373 427-561 (655)
110 PRK05298 excinuclease ABC subu 99.9 2.4E-19 5.1E-24 197.2 32.5 119 246-365 432-557 (652)
111 PRK13103 secA preprotein trans 99.9 1.4E-19 3E-24 197.6 30.0 324 26-368 71-594 (913)
112 PRK12903 secA preprotein trans 99.9 3.6E-19 7.9E-24 192.4 29.6 323 26-367 67-541 (925)
113 KOG0923 mRNA splicing factor A 99.8 4.1E-20 8.9E-25 190.7 18.8 315 28-366 255-607 (902)
114 CHL00122 secA preprotein trans 99.8 3.5E-18 7.7E-23 185.9 30.8 282 26-325 65-491 (870)
115 PF00270 DEAD: DEAD/DEAH box h 99.8 8.7E-20 1.9E-24 167.5 15.5 155 40-207 1-166 (169)
116 KOG0385 Chromatin remodeling c 99.8 8.7E-19 1.9E-23 183.8 24.6 311 37-363 166-595 (971)
117 COG0556 UvrB Helicase subunit 99.8 1.5E-18 3.3E-23 176.1 24.9 165 194-365 387-557 (663)
118 KOG0924 mRNA splicing factor A 99.8 1.4E-19 3E-24 187.2 17.2 300 40-365 358-697 (1042)
119 TIGR00348 hsdR type I site-spe 99.8 3E-18 6.6E-23 189.2 28.1 294 39-351 239-633 (667)
120 TIGR01407 dinG_rel DnaQ family 99.8 5.7E-18 1.2E-22 192.5 29.1 167 195-365 597-814 (850)
121 KOG4150 Predicted ATP-dependen 99.8 3.2E-19 6.9E-24 181.1 16.2 325 34-365 282-640 (1034)
122 KOG0953 Mitochondrial RNA heli 99.8 1.8E-18 3.9E-23 175.9 21.4 282 54-377 192-488 (700)
123 KOG0949 Predicted helicase, DE 99.8 3.9E-18 8.5E-23 182.5 24.3 321 39-374 512-1055(1330)
124 PRK12902 secA preprotein trans 99.8 6.1E-17 1.3E-21 176.0 31.8 282 26-325 74-506 (939)
125 KOG0926 DEAH-box RNA helicase 99.8 1.1E-18 2.3E-23 183.4 16.0 301 44-365 262-704 (1172)
126 COG4096 HsdR Type I site-speci 99.8 8.4E-19 1.8E-23 186.9 12.2 325 4-351 128-524 (875)
127 cd00079 HELICc Helicase superf 99.8 7.1E-18 1.5E-22 147.7 14.3 118 244-361 12-131 (131)
128 KOG0920 ATP-dependent RNA heli 99.8 8.5E-18 1.8E-22 184.3 17.8 308 39-369 174-548 (924)
129 PF00271 Helicase_C: Helicase 99.7 4.6E-18 9.9E-23 135.5 9.0 78 276-353 1-78 (78)
130 PRK07246 bifunctional ATP-depe 99.7 5.8E-16 1.3E-20 174.0 27.4 181 195-378 575-798 (820)
131 KOG0387 Transcription-coupled 99.7 1.9E-16 4.2E-21 167.2 20.9 311 37-361 204-652 (923)
132 KOG0384 Chromodomain-helicase 99.7 2.7E-16 5.9E-21 172.5 22.1 314 37-365 369-811 (1373)
133 KOG0390 DNA repair protein, SN 99.7 1.2E-15 2.6E-20 165.0 22.2 311 38-362 238-702 (776)
134 PRK12901 secA preprotein trans 99.7 3.7E-15 8.1E-20 163.7 25.5 123 243-367 611-743 (1112)
135 KOG0925 mRNA splicing factor A 99.7 7E-15 1.5E-19 147.7 23.8 322 13-365 23-387 (699)
136 KOG0389 SNF2 family DNA-depend 99.7 3.2E-15 7E-20 157.9 21.7 322 35-368 397-891 (941)
137 PRK08074 bifunctional ATP-depe 99.7 4.4E-14 9.5E-19 161.6 31.1 184 195-378 674-908 (928)
138 PRK14873 primosome assembly pr 99.6 9.7E-14 2.1E-18 151.7 28.1 288 59-374 166-547 (665)
139 smart00487 DEXDc DEAD-like hel 99.6 1.4E-14 3.1E-19 135.3 16.8 167 34-216 4-183 (201)
140 smart00490 HELICc helicase sup 99.6 4.2E-15 9.1E-20 118.8 9.5 81 273-353 2-82 (82)
141 KOG1123 RNA polymerase II tran 99.6 1.4E-14 3E-19 146.0 14.0 290 37-353 301-635 (776)
142 TIGR03117 cas_csf4 CRISPR-asso 99.6 9E-13 1.9E-17 142.5 28.4 168 195-365 373-616 (636)
143 KOG1000 Chromatin remodeling p 99.6 1.7E-13 3.7E-18 138.2 18.5 307 37-363 197-599 (689)
144 COG1199 DinG Rad3-related DNA 99.6 9E-13 2E-17 146.9 26.0 166 195-364 405-616 (654)
145 PF04851 ResIII: Type III rest 99.5 5.4E-15 1.2E-19 137.3 5.6 156 38-204 3-183 (184)
146 PRK11747 dinG ATP-dependent DN 99.5 7.6E-12 1.6E-16 139.1 30.5 164 196-365 459-674 (697)
147 TIGR00604 rad3 DNA repair heli 99.5 7.1E-12 1.5E-16 140.2 27.5 70 32-101 4-83 (705)
148 KOG0951 RNA helicase BRR2, DEA 99.5 4.4E-13 9.6E-18 147.4 17.1 308 38-378 1143-1507(1674)
149 KOG0392 SNF2 family DNA-depend 99.5 2.6E-12 5.6E-17 141.3 19.6 306 38-361 975-1448(1549)
150 COG4889 Predicted helicase [Ge 99.5 1.6E-13 3.4E-18 146.0 9.9 301 37-353 160-573 (1518)
151 KOG0386 Chromatin remodeling c 99.4 1.5E-12 3.2E-17 141.1 14.2 321 38-376 394-847 (1157)
152 COG0653 SecA Preprotein transl 99.4 4.2E-11 9.1E-16 130.5 23.1 324 27-367 70-547 (822)
153 cd00046 DEXDc DEAD-like helica 99.4 4.1E-12 8.8E-17 111.6 10.9 135 54-203 1-144 (144)
154 TIGR02562 cas3_yersinia CRISPR 99.3 5.9E-10 1.3E-14 123.9 22.3 91 261-354 759-881 (1110)
155 KOG0388 SNF2 family DNA-depend 99.2 2.2E-09 4.8E-14 112.7 19.2 105 257-361 1043-1148(1185)
156 KOG0391 SNF2 family DNA-depend 99.1 4.4E-09 9.5E-14 115.5 20.9 123 257-379 1275-1399(1958)
157 KOG4439 RNA polymerase II tran 99.1 3.3E-09 7.2E-14 111.7 18.4 91 271-361 759-852 (901)
158 PF02399 Herpes_ori_bp: Origin 99.1 9.9E-09 2.2E-13 111.6 21.0 281 56-365 52-388 (824)
159 PF06862 DUF1253: Protein of u 99.1 9E-08 2E-12 99.2 26.7 297 78-375 37-425 (442)
160 KOG1002 Nucleotide excision re 99.1 3.7E-09 8E-14 107.2 15.9 110 257-366 637-750 (791)
161 COG0553 HepA Superfamily II DN 99.0 2.4E-08 5.3E-13 115.1 23.3 103 260-362 713-817 (866)
162 PF00176 SNF2_N: SNF2 family N 98.9 6.8E-09 1.5E-13 104.1 11.0 161 42-220 1-189 (299)
163 COG0610 Type I site-specific r 98.9 3E-07 6.6E-12 105.4 23.7 304 54-375 274-661 (962)
164 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.8E-08 3.8E-13 98.3 11.4 135 26-171 66-210 (266)
165 PF07652 Flavi_DEAD: Flaviviru 98.8 3.7E-09 7.9E-14 92.1 3.6 132 53-207 4-140 (148)
166 KOG1015 Transcription regulato 98.8 2.4E-07 5.3E-12 100.4 17.1 105 257-361 1141-1271(1567)
167 KOG2340 Uncharacterized conser 98.5 4.4E-06 9.6E-11 86.1 16.8 118 258-375 552-678 (698)
168 smart00488 DEXDc2 DEAD-like he 98.4 9.4E-07 2E-11 88.3 9.8 72 33-105 4-88 (289)
169 smart00489 DEXDc3 DEAD-like he 98.4 9.4E-07 2E-11 88.3 9.8 72 33-105 4-88 (289)
170 PF13307 Helicase_C_2: Helicas 98.2 5.2E-06 1.1E-10 76.1 8.0 112 250-364 2-149 (167)
171 KOG0952 DNA/RNA helicase MER3/ 98.2 2E-07 4.4E-12 102.5 -2.2 219 38-275 927-1170(1230)
172 KOG0921 Dosage compensation co 98.1 1.4E-05 3.1E-10 86.8 11.3 107 258-365 643-774 (1282)
173 TIGR00596 rad1 DNA repair prot 98.1 0.00017 3.7E-09 81.1 19.7 79 131-218 8-92 (814)
174 PRK15483 type III restriction- 98.1 4.7E-05 1E-09 85.8 14.7 45 308-352 501-545 (986)
175 PF13872 AAA_34: P-loop contai 97.8 0.00012 2.5E-09 72.1 10.1 162 38-206 37-223 (303)
176 PF13604 AAA_30: AAA domain; P 97.6 0.00015 3.3E-09 68.2 7.5 56 38-93 1-61 (196)
177 KOG1016 Predicted DNA helicase 97.5 0.013 2.8E-07 63.7 21.0 116 258-373 719-855 (1387)
178 PF13086 AAA_11: AAA domain; P 97.5 0.0002 4.2E-09 68.7 6.9 63 38-100 1-75 (236)
179 KOG1803 DNA helicase [Replicat 97.4 0.00029 6.3E-09 74.4 7.3 63 37-99 184-250 (649)
180 PF02562 PhoH: PhoH-like prote 97.4 0.00025 5.4E-09 66.7 5.9 54 37-90 3-61 (205)
181 KOG1805 DNA replication helica 97.4 0.0013 2.9E-08 72.9 12.0 141 19-172 655-810 (1100)
182 PF13245 AAA_19: Part of AAA d 97.4 0.00044 9.5E-09 54.3 6.0 53 46-98 2-62 (76)
183 TIGR01448 recD_rel helicase, p 97.3 0.0018 4E-08 72.8 12.5 62 30-92 316-382 (720)
184 PRK10536 hypothetical protein; 97.3 0.0032 6.9E-08 61.1 11.8 56 35-90 56-116 (262)
185 smart00492 HELICc3 helicase su 97.2 0.0031 6.8E-08 55.9 10.4 66 272-337 5-79 (141)
186 PF09848 DUF2075: Uncharacteri 97.2 0.0011 2.4E-08 68.3 8.7 45 56-100 4-53 (352)
187 smart00491 HELICc2 helicase su 97.1 0.0032 7E-08 55.9 9.6 93 271-363 4-137 (142)
188 PF13401 AAA_22: AAA domain; P 97.1 0.0022 4.8E-08 55.6 8.2 18 53-70 4-21 (131)
189 PRK10875 recD exonuclease V su 97.1 0.0075 1.6E-07 66.3 13.5 76 24-99 137-220 (615)
190 PF12340 DUF3638: Protein of u 97.0 0.011 2.4E-07 56.3 12.6 62 37-100 22-91 (229)
191 PRK12723 flagellar biosynthesi 96.9 0.02 4.3E-07 59.4 13.9 123 54-216 175-310 (388)
192 KOG1802 RNA helicase nonsense 96.8 0.0024 5.1E-08 68.1 6.6 77 33-109 405-485 (935)
193 TIGR01447 recD exodeoxyribonuc 96.7 0.017 3.6E-07 63.4 12.8 61 40-100 147-215 (586)
194 KOG1132 Helicase of the DEAD s 96.7 0.0064 1.4E-07 67.1 9.4 72 30-102 14-134 (945)
195 cd00009 AAA The AAA+ (ATPases 96.7 0.016 3.4E-07 50.5 10.1 19 53-71 19-37 (151)
196 TIGR00376 DNA helicase, putati 96.6 0.0079 1.7E-07 66.7 9.4 73 37-109 156-232 (637)
197 PF13871 Helicase_C_4: Helicas 96.6 0.0067 1.5E-07 59.6 7.6 59 299-357 52-118 (278)
198 COG1875 NYN ribonuclease and A 96.5 0.011 2.5E-07 59.3 8.8 63 29-91 219-289 (436)
199 PRK06526 transposase; Provisio 96.5 0.016 3.4E-07 56.8 9.6 21 51-71 96-116 (254)
200 PRK08727 hypothetical protein; 96.5 0.022 4.9E-07 55.0 10.4 16 54-69 42-57 (233)
201 PF05970 PIF1: PIF1-like helic 96.4 0.0044 9.6E-08 64.2 5.5 55 38-92 1-64 (364)
202 PF00448 SRP54: SRP54-type pro 96.4 0.054 1.2E-06 50.9 12.0 127 56-215 4-137 (196)
203 PRK08181 transposase; Validate 96.3 0.038 8.1E-07 54.6 11.1 54 40-93 89-148 (269)
204 cd01122 GP4d_helicase GP4d_hel 96.3 0.025 5.3E-07 56.0 9.9 120 50-172 27-154 (271)
205 PRK08084 DNA replication initi 96.3 0.1 2.2E-06 50.6 13.8 17 54-70 46-62 (235)
206 KOG0383 Predicted helicase [Ge 96.2 0.0017 3.6E-08 71.1 1.1 64 257-321 630-696 (696)
207 PF00580 UvrD-helicase: UvrD/R 96.2 0.0061 1.3E-07 61.3 5.0 60 39-100 1-67 (315)
208 COG2256 MGS1 ATPase related to 96.2 0.02 4.3E-07 58.4 8.3 34 54-87 49-82 (436)
209 PRK04296 thymidine kinase; Pro 96.1 0.013 2.9E-07 54.8 6.7 32 55-86 4-38 (190)
210 PRK06893 DNA replication initi 96.1 0.03 6.5E-07 54.0 9.0 48 158-208 91-139 (229)
211 PLN03025 replication factor C 96.0 0.033 7.2E-07 56.6 9.3 46 158-209 99-144 (319)
212 smart00382 AAA ATPases associa 96.0 0.015 3.3E-07 50.1 6.0 38 53-90 2-42 (148)
213 PRK12377 putative replication 96.0 0.046 9.9E-07 53.3 9.6 40 54-93 102-143 (248)
214 PRK14956 DNA polymerase III su 96.0 0.065 1.4E-06 56.8 11.4 50 157-212 120-169 (484)
215 PRK05703 flhF flagellar biosyn 96.0 0.45 9.8E-06 50.2 17.8 55 158-216 299-355 (424)
216 cd01124 KaiC KaiC is a circadi 96.0 0.084 1.8E-06 48.8 11.2 48 56-104 2-52 (187)
217 PRK06921 hypothetical protein; 95.9 0.15 3.3E-06 50.3 13.4 41 53-93 117-160 (266)
218 PRK11889 flhF flagellar biosyn 95.9 0.18 3.8E-06 52.2 13.8 55 158-216 320-375 (436)
219 cd01120 RecA-like_NTPases RecA 95.8 0.13 2.7E-06 45.9 11.6 35 56-90 2-39 (165)
220 COG1419 FlhF Flagellar GTP-bin 95.8 0.21 4.5E-06 51.5 14.0 126 53-218 203-338 (407)
221 PRK14974 cell division protein 95.8 0.38 8.2E-06 49.1 15.8 51 158-212 222-273 (336)
222 COG1110 Reverse gyrase [DNA re 95.8 0.043 9.3E-07 61.8 9.5 93 242-334 109-211 (1187)
223 PRK05973 replicative DNA helic 95.7 0.17 3.7E-06 48.8 12.2 84 18-103 21-116 (237)
224 PRK07952 DNA replication prote 95.6 0.26 5.7E-06 47.9 13.3 53 41-93 79-141 (244)
225 COG3587 Restriction endonuclea 95.6 0.014 3E-07 64.3 4.7 71 307-377 482-565 (985)
226 PRK06835 DNA replication prote 95.5 0.16 3.5E-06 51.6 12.1 41 53-93 183-225 (329)
227 PRK08903 DnaA regulatory inact 95.5 0.18 4E-06 48.3 12.0 17 53-69 42-58 (227)
228 cd00984 DnaB_C DnaB helicase C 95.5 0.12 2.6E-06 50.1 10.7 118 52-172 12-137 (242)
229 PRK08769 DNA polymerase III su 95.4 0.074 1.6E-06 53.8 9.1 35 36-70 2-43 (319)
230 PRK05580 primosome assembly pr 95.4 0.097 2.1E-06 58.8 10.8 76 258-334 190-266 (679)
231 PF05621 TniB: Bacterial TniB 95.4 0.12 2.7E-06 51.2 10.3 43 158-202 145-188 (302)
232 PRK08116 hypothetical protein; 95.4 0.23 5.1E-06 49.0 12.3 39 55-93 116-156 (268)
233 PRK12323 DNA polymerase III su 95.4 0.087 1.9E-06 57.7 9.8 52 156-213 122-173 (700)
234 PF13173 AAA_14: AAA domain 95.3 0.094 2E-06 45.5 8.4 40 159-206 62-101 (128)
235 PF03796 DnaB_C: DnaB-like hel 95.3 0.079 1.7E-06 52.1 8.8 145 55-204 21-181 (259)
236 PTZ00112 origin recognition co 95.2 0.42 9.1E-06 54.0 14.6 32 39-70 759-798 (1164)
237 PRK13826 Dtr system oriT relax 95.2 0.12 2.5E-06 60.3 10.7 67 38-108 381-452 (1102)
238 PRK14712 conjugal transfer nic 95.2 0.089 1.9E-06 63.3 10.0 66 38-107 835-909 (1623)
239 cd01126 TraG_VirD4 The TraG/Tr 95.2 0.015 3.2E-07 60.8 3.2 56 55-110 1-57 (384)
240 PRK14964 DNA polymerase III su 95.1 0.23 4.9E-06 53.2 12.0 50 157-212 115-164 (491)
241 PRK13342 recombination factor 95.0 0.15 3.2E-06 53.8 10.4 19 54-72 37-55 (413)
242 TIGR00595 priA primosomal prot 95.0 0.13 2.8E-06 55.7 10.0 76 258-334 25-101 (505)
243 PRK05707 DNA polymerase III su 95.0 0.1 2.2E-06 53.2 8.6 32 39-70 4-39 (328)
244 PRK14949 DNA polymerase III su 95.0 0.2 4.3E-06 56.8 11.5 45 157-207 118-162 (944)
245 PRK04195 replication factor C 95.0 0.17 3.7E-06 54.5 10.8 42 158-202 98-139 (482)
246 PRK13341 recombination factor 94.9 0.21 4.5E-06 56.3 11.5 38 159-205 110-147 (725)
247 TIGR02881 spore_V_K stage V sp 94.9 0.13 2.9E-06 50.5 9.0 18 54-71 43-60 (261)
248 PRK10917 ATP-dependent DNA hel 94.9 0.076 1.6E-06 59.7 8.1 77 257-333 309-390 (681)
249 KOG0989 Replication factor C, 94.8 0.11 2.4E-06 51.3 7.9 35 42-76 40-80 (346)
250 TIGR02928 orc1/cdc6 family rep 94.8 0.27 5.9E-06 50.8 11.4 17 54-70 41-57 (365)
251 PRK12724 flagellar biosynthesi 94.7 0.75 1.6E-05 48.1 14.2 122 55-216 225-357 (432)
252 PRK14722 flhF flagellar biosyn 94.7 0.51 1.1E-05 48.8 12.9 54 158-215 215-269 (374)
253 PF00004 AAA: ATPase family as 94.7 0.14 3.1E-06 44.0 7.8 17 56-72 1-17 (132)
254 cd01121 Sms Sms (bacterial rad 94.6 0.58 1.3E-05 48.5 13.2 56 46-102 70-133 (372)
255 PF03354 Terminase_1: Phage Te 94.6 0.18 3.9E-06 54.2 9.9 61 41-101 1-77 (477)
256 KOG1133 Helicase of the DEAD s 94.6 0.67 1.4E-05 50.5 13.6 106 254-363 626-778 (821)
257 PRK14873 primosome assembly pr 94.6 0.26 5.6E-06 55.0 11.1 76 258-334 188-265 (665)
258 TIGR02768 TraA_Ti Ti-type conj 94.6 1 2.2E-05 51.1 16.2 55 38-92 352-410 (744)
259 COG1474 CDC6 Cdc6-related prot 94.6 0.62 1.3E-05 48.2 13.2 17 54-70 43-59 (366)
260 PF02534 T4SS-DNA_transf: Type 94.5 0.027 5.8E-07 60.5 3.3 56 54-109 45-101 (469)
261 PRK00411 cdc6 cell division co 94.5 0.83 1.8E-05 47.7 14.5 17 54-70 56-72 (394)
262 PRK14959 DNA polymerase III su 94.5 0.31 6.7E-06 53.5 11.4 46 157-208 118-163 (624)
263 PRK05642 DNA replication initi 94.5 0.32 7E-06 47.0 10.4 44 159-206 98-142 (234)
264 PRK12727 flagellar biosynthesi 94.5 1.5 3.3E-05 47.2 16.0 55 157-215 427-481 (559)
265 PHA02544 44 clamp loader, smal 94.4 0.69 1.5E-05 46.7 13.3 43 158-205 100-142 (316)
266 PRK12422 chromosomal replicati 94.4 0.42 9.1E-06 50.8 11.7 47 158-207 202-248 (445)
267 PRK06731 flhF flagellar biosyn 94.3 1.1 2.3E-05 44.3 13.7 56 157-216 153-209 (270)
268 TIGR03600 phage_DnaB phage rep 94.3 0.45 9.8E-06 50.3 12.0 143 54-202 195-353 (421)
269 TIGR02760 TraI_TIGR conjugativ 94.3 0.2 4.4E-06 62.4 10.4 66 37-106 1018-1092(1960)
270 PRK14961 DNA polymerase III su 94.3 0.22 4.8E-06 51.5 9.3 41 157-203 118-158 (363)
271 PF00308 Bac_DnaA: Bacterial d 94.2 0.27 5.8E-06 47.1 9.1 57 158-216 97-156 (219)
272 PRK13889 conjugal transfer rel 94.2 2.3 4.9E-05 49.6 17.9 57 35-92 344-404 (988)
273 PRK08760 replicative DNA helic 94.2 0.21 4.5E-06 53.6 9.1 144 55-201 231-387 (476)
274 PRK05748 replicative DNA helic 94.2 0.24 5.3E-06 52.8 9.6 147 54-203 204-365 (448)
275 PRK06645 DNA polymerase III su 94.1 0.49 1.1E-05 51.0 11.7 20 54-73 44-63 (507)
276 PRK14958 DNA polymerase III su 94.1 0.4 8.7E-06 51.9 11.0 43 156-204 117-159 (509)
277 TIGR03015 pepcterm_ATPase puta 94.0 0.5 1.1E-05 46.4 10.9 17 55-71 45-61 (269)
278 PF05496 RuvB_N: Holliday junc 94.0 0.048 1E-06 51.8 3.3 21 55-75 52-72 (233)
279 PRK14962 DNA polymerase III su 94.0 0.43 9.3E-06 51.1 10.9 17 56-72 39-55 (472)
280 PRK05595 replicative DNA helic 94.0 0.26 5.7E-06 52.5 9.3 144 56-202 204-360 (444)
281 PRK05563 DNA polymerase III su 93.9 0.34 7.4E-06 53.1 10.3 48 156-209 117-164 (559)
282 PRK07764 DNA polymerase III su 93.9 0.2 4.4E-06 57.1 8.8 44 157-206 119-162 (824)
283 PRK13897 type IV secretion sys 93.9 0.047 1E-06 59.9 3.6 58 54-111 159-217 (606)
284 TIGR00643 recG ATP-dependent D 93.9 0.14 3.1E-06 57.1 7.4 78 257-334 283-365 (630)
285 PRK13709 conjugal transfer nic 93.9 0.29 6.2E-06 59.9 10.3 67 38-108 967-1042(1747)
286 PRK08840 replicative DNA helic 93.9 0.72 1.6E-05 49.3 12.4 144 54-200 218-376 (464)
287 PRK07003 DNA polymerase III su 93.9 0.18 3.9E-06 56.2 7.9 45 157-207 118-162 (830)
288 TIGR02760 TraI_TIGR conjugativ 93.9 2.6 5.6E-05 53.0 18.7 203 38-280 429-648 (1960)
289 KOG0734 AAA+-type ATPase conta 93.9 0.81 1.8E-05 48.6 12.1 64 146-209 384-453 (752)
290 PRK14960 DNA polymerase III su 93.8 0.27 5.8E-06 54.1 9.0 45 157-207 117-161 (702)
291 PRK11823 DNA repair protein Ra 93.8 1.1 2.5E-05 47.6 13.7 57 46-103 68-132 (446)
292 PRK00149 dnaA chromosomal repl 93.7 0.58 1.3E-05 50.0 11.5 17 54-70 149-165 (450)
293 COG1222 RPT1 ATP-dependent 26S 93.7 0.68 1.5E-05 46.8 10.9 76 13-92 146-223 (406)
294 PRK14948 DNA polymerase III su 93.7 0.35 7.5E-06 53.6 9.9 42 157-204 120-161 (620)
295 KOG0741 AAA+-type ATPase [Post 93.7 0.56 1.2E-05 49.7 10.6 33 55-87 540-573 (744)
296 PRK06871 DNA polymerase III su 93.7 0.3 6.6E-06 49.5 8.6 52 155-212 104-155 (325)
297 TIGR02655 circ_KaiC circadian 93.6 0.22 4.7E-06 53.7 8.0 109 45-171 250-366 (484)
298 TIGR03420 DnaA_homol_Hda DnaA 93.6 0.42 9.1E-06 45.6 9.2 19 53-71 38-56 (226)
299 TIGR00362 DnaA chromosomal rep 93.6 0.64 1.4E-05 48.9 11.3 17 54-70 137-153 (405)
300 TIGR01241 FtsH_fam ATP-depende 93.5 0.65 1.4E-05 50.2 11.5 18 54-71 89-106 (495)
301 KOG0739 AAA+-type ATPase [Post 93.4 0.83 1.8E-05 45.0 10.6 111 55-212 168-286 (439)
302 PRK08939 primosomal protein Dn 93.4 0.33 7.3E-06 48.9 8.5 17 53-69 156-172 (306)
303 PRK14952 DNA polymerase III su 93.4 0.64 1.4E-05 51.0 11.2 51 156-212 116-166 (584)
304 CHL00176 ftsH cell division pr 93.4 0.69 1.5E-05 51.4 11.6 18 54-71 217-234 (638)
305 PF13481 AAA_25: AAA domain; P 93.4 0.73 1.6E-05 42.7 10.3 139 52-201 31-187 (193)
306 PF02456 Adeno_IVa2: Adenoviru 93.3 0.38 8.2E-06 47.6 8.2 34 56-91 90-130 (369)
307 PRK06090 DNA polymerase III su 93.3 0.38 8.2E-06 48.7 8.7 53 155-213 105-157 (319)
308 PRK12402 replication factor C 93.2 0.8 1.7E-05 46.6 11.2 40 158-203 125-164 (337)
309 PHA02542 41 41 helicase; Provi 93.2 0.75 1.6E-05 49.2 11.2 153 44-202 176-353 (473)
310 PRK10416 signal recognition pa 93.2 2.6 5.6E-05 42.7 14.6 53 157-213 195-254 (318)
311 PRK06067 flagellar accessory p 93.2 2.6 5.5E-05 40.6 14.1 102 53-172 25-134 (234)
312 TIGR03878 thermo_KaiC_2 KaiC d 93.2 0.34 7.3E-06 47.7 7.9 52 52-103 35-92 (259)
313 PRK08533 flagellar accessory p 93.1 1.7 3.7E-05 41.8 12.7 51 52-103 23-76 (230)
314 COG1444 Predicted P-loop ATPas 93.1 0.88 1.9E-05 50.8 11.7 136 35-204 211-357 (758)
315 PRK06904 replicative DNA helic 93.1 2.1 4.5E-05 46.0 14.4 142 55-200 223-381 (472)
316 PRK14951 DNA polymerase III su 93.1 0.54 1.2E-05 51.8 10.1 46 156-207 122-167 (618)
317 PRK06964 DNA polymerase III su 93.0 0.41 8.9E-06 48.9 8.5 51 156-212 130-180 (342)
318 PRK13850 type IV secretion sys 93.0 0.092 2E-06 58.4 4.1 57 54-110 140-197 (670)
319 KOG2028 ATPase related to the 93.0 0.47 1E-05 48.0 8.5 47 28-75 135-184 (554)
320 PHA02533 17 large terminase pr 93.0 0.36 7.9E-06 52.4 8.5 63 38-100 59-126 (534)
321 PRK10919 ATP-dependent DNA hel 92.9 0.16 3.5E-06 57.0 5.9 61 38-100 2-69 (672)
322 PRK08691 DNA polymerase III su 92.9 0.86 1.9E-05 50.6 11.2 45 157-207 118-162 (709)
323 PRK09165 replicative DNA helic 92.9 0.44 9.5E-06 51.5 8.9 117 55-173 219-356 (497)
324 TIGR00665 DnaB replicative DNA 92.9 0.57 1.2E-05 49.8 9.7 145 54-202 196-354 (434)
325 PF06745 KaiC: KaiC; InterPro 92.9 0.44 9.6E-06 45.6 8.2 130 53-202 19-159 (226)
326 PRK08006 replicative DNA helic 92.8 1.3 2.8E-05 47.5 12.3 143 56-202 227-385 (471)
327 PRK05636 replicative DNA helic 92.8 0.52 1.1E-05 50.9 9.3 142 54-201 265-423 (505)
328 COG1198 PriA Primosomal protei 92.7 0.32 7E-06 54.3 7.7 82 247-331 236-318 (730)
329 TIGR00580 mfd transcription-re 92.7 0.31 6.7E-06 56.4 7.8 75 258-332 500-579 (926)
330 PRK07994 DNA polymerase III su 92.7 0.59 1.3E-05 51.8 9.7 46 156-207 117-162 (647)
331 PRK09111 DNA polymerase III su 92.5 1.3 2.9E-05 48.8 12.1 45 156-206 130-174 (598)
332 PRK11034 clpA ATP-dependent Cl 92.4 1.1 2.3E-05 51.0 11.4 19 53-71 207-225 (758)
333 PRK08506 replicative DNA helic 92.3 0.65 1.4E-05 49.9 9.3 144 55-202 194-351 (472)
334 PRK09183 transposase/IS protei 92.3 1.5 3.2E-05 43.2 11.1 42 50-92 99-143 (259)
335 KOG0701 dsRNA-specific nucleas 92.3 0.098 2.1E-06 62.4 3.2 95 258-352 292-398 (1606)
336 PRK13822 conjugal transfer cou 92.3 0.15 3.2E-06 56.6 4.4 58 54-111 225-283 (641)
337 COG4185 Uncharacterized protei 92.3 0.31 6.8E-06 43.6 5.5 39 140-178 77-126 (187)
338 PRK14955 DNA polymerase III su 92.2 0.85 1.8E-05 47.9 9.9 45 156-206 125-169 (397)
339 PRK07940 DNA polymerase III su 92.2 0.94 2E-05 47.3 10.1 51 156-212 115-165 (394)
340 COG2255 RuvB Holliday junction 92.2 0.4 8.6E-06 47.0 6.6 46 29-74 24-73 (332)
341 PF13177 DNA_pol3_delta2: DNA 92.2 1.1 2.3E-05 40.7 9.3 51 157-213 101-151 (162)
342 PRK00771 signal recognition pa 92.1 3.7 8.1E-05 43.5 14.5 47 159-209 176-223 (437)
343 PRK06321 replicative DNA helic 92.1 1.1 2.4E-05 47.9 10.8 153 46-202 215-388 (472)
344 PRK14086 dnaA chromosomal repl 92.1 1.2 2.6E-05 48.9 11.0 42 55-96 316-361 (617)
345 KOG1001 Helicase-like transcri 92.1 0.51 1.1E-05 52.5 8.3 137 55-216 154-305 (674)
346 PRK14953 DNA polymerase III su 92.1 1.4 3.1E-05 47.4 11.5 42 156-203 117-158 (486)
347 TIGR01075 uvrD DNA helicase II 92.1 0.21 4.5E-06 56.6 5.5 63 37-101 3-72 (715)
348 TIGR02639 ClpA ATP-dependent C 92.1 1.4 3E-05 50.2 12.0 17 54-70 204-220 (731)
349 TIGR00064 ftsY signal recognit 92.0 4.8 0.0001 39.8 14.4 53 157-213 153-212 (272)
350 KOG0298 DEAD box-containing he 92.0 0.17 3.8E-06 58.3 4.6 148 53-215 374-561 (1394)
351 PRK07993 DNA polymerase III su 91.9 0.58 1.2E-05 47.8 8.0 54 154-213 104-157 (334)
352 PF05876 Terminase_GpA: Phage 91.9 0.38 8.2E-06 52.7 7.1 63 38-100 16-85 (557)
353 TIGR02767 TraG-Ti Ti-type conj 91.8 0.19 4.2E-06 55.4 4.7 57 54-110 212-270 (623)
354 PRK14957 DNA polymerase III su 91.8 0.73 1.6E-05 50.1 8.9 42 156-203 117-158 (546)
355 TIGR03877 thermo_KaiC_1 KaiC d 91.7 0.31 6.7E-06 47.2 5.5 51 53-104 21-74 (237)
356 PTZ00454 26S protease regulato 91.7 1.8 3.8E-05 45.4 11.5 19 53-71 179-197 (398)
357 KOG1133 Helicase of the DEAD s 91.7 0.22 4.9E-06 54.0 4.8 36 38-73 15-54 (821)
358 PRK05986 cob(I)alamin adenolsy 91.7 1.1 2.3E-05 41.8 8.7 136 52-207 21-161 (191)
359 PRK14087 dnaA chromosomal repl 91.7 1.9 4.1E-05 46.0 11.9 44 54-98 142-190 (450)
360 CHL00181 cbbX CbbX; Provisiona 91.7 1.3 2.9E-05 44.1 10.1 20 53-72 59-78 (287)
361 PRK12726 flagellar biosynthesi 91.7 4.6 0.0001 41.8 13.9 53 157-213 284-337 (407)
362 PRK14963 DNA polymerase III su 91.6 0.83 1.8E-05 49.4 9.2 16 56-71 39-54 (504)
363 PRK14088 dnaA chromosomal repl 91.6 2.6 5.6E-05 44.9 12.8 18 54-71 131-148 (440)
364 PRK11773 uvrD DNA-dependent he 91.6 0.27 5.8E-06 55.8 5.6 63 37-101 8-77 (721)
365 PRK14965 DNA polymerase III su 91.6 1 2.2E-05 49.6 10.0 50 156-211 117-166 (576)
366 PRK14721 flhF flagellar biosyn 91.6 3.1 6.8E-05 43.7 13.0 56 157-216 268-324 (420)
367 PRK07004 replicative DNA helic 91.5 1 2.2E-05 48.2 9.7 144 54-202 214-373 (460)
368 TIGR01243 CDC48 AAA family ATP 91.5 1.6 3.5E-05 49.7 11.8 19 54-72 488-506 (733)
369 COG0470 HolB ATPase involved i 91.5 0.72 1.6E-05 46.5 8.2 45 157-207 108-152 (325)
370 PRK13833 conjugal transfer pro 91.5 0.47 1E-05 48.1 6.7 52 39-90 129-186 (323)
371 PRK06995 flhF flagellar biosyn 91.5 18 0.00039 38.9 18.7 56 157-216 333-389 (484)
372 TIGR01243 CDC48 AAA family ATP 91.5 1 2.2E-05 51.3 10.1 19 53-71 212-230 (733)
373 TIGR02880 cbbX_cfxQ probable R 91.4 1.3 2.9E-05 44.1 9.8 17 54-70 59-75 (284)
374 PF01695 IstB_IS21: IstB-like 91.4 0.29 6.2E-06 45.2 4.7 42 52-93 46-89 (178)
375 PRK05896 DNA polymerase III su 91.4 1.4 3.1E-05 48.3 10.6 44 158-207 119-162 (605)
376 COG1200 RecG RecG-like helicas 91.3 1.1 2.3E-05 49.2 9.4 76 257-332 310-390 (677)
377 PRK13876 conjugal transfer cou 91.3 0.18 3.8E-06 56.1 3.7 55 54-109 145-200 (663)
378 PRK03992 proteasome-activating 91.3 1.8 4E-05 45.2 11.1 18 54-71 166-183 (389)
379 PRK10689 transcription-repair 91.2 0.57 1.2E-05 55.6 8.0 76 257-332 648-728 (1147)
380 COG4962 CpaF Flp pilus assembl 91.2 0.48 1E-05 47.8 6.2 57 34-90 153-212 (355)
381 PRK07133 DNA polymerase III su 91.2 1.3 2.9E-05 49.5 10.3 44 156-205 116-159 (725)
382 COG1484 DnaC DNA replication p 91.1 0.49 1.1E-05 46.4 6.2 64 35-98 80-152 (254)
383 TIGR00708 cobA cob(I)alamin ad 91.1 1.1 2.5E-05 40.9 8.1 54 151-207 90-143 (173)
384 TIGR01074 rep ATP-dependent DN 91.1 0.36 7.8E-06 54.3 6.0 61 38-100 1-68 (664)
385 COG0464 SpoVK ATPases of the A 91.1 2 4.3E-05 46.5 11.6 39 54-93 277-315 (494)
386 KOG0738 AAA+-type ATPase [Post 91.1 1.7 3.8E-05 44.4 10.0 59 12-70 180-262 (491)
387 TIGR01425 SRP54_euk signal rec 91.1 5.1 0.00011 42.2 14.0 120 56-208 103-229 (429)
388 PRK09112 DNA polymerase III su 91.1 4.4 9.6E-05 41.7 13.4 44 156-205 139-182 (351)
389 COG0513 SrmB Superfamily II DN 91.1 0.82 1.8E-05 49.7 8.5 69 261-333 102-181 (513)
390 TIGR00635 ruvB Holliday juncti 91.0 1.9 4.1E-05 43.2 10.7 18 54-71 31-48 (305)
391 PRK14701 reverse gyrase; Provi 91.0 1.2 2.6E-05 54.6 10.5 62 257-318 121-188 (1638)
392 PF05127 Helicase_RecD: Helica 90.8 0.26 5.7E-06 45.3 3.7 116 57-204 1-124 (177)
393 cd00561 CobA_CobO_BtuR ATP:cor 90.7 1.3 2.8E-05 40.0 8.0 53 151-206 88-140 (159)
394 PRK09354 recA recombinase A; P 90.6 1.4 3E-05 45.1 9.1 96 46-171 47-151 (349)
395 PRK08699 DNA polymerase III su 90.6 1.5 3.2E-05 44.7 9.4 33 39-71 2-39 (325)
396 KOG1131 RNA polymerase II tran 90.6 0.81 1.8E-05 48.3 7.3 69 32-100 10-89 (755)
397 COG1219 ClpX ATP-dependent pro 90.6 0.25 5.5E-06 49.0 3.6 19 54-72 98-116 (408)
398 PRK14969 DNA polymerase III su 90.5 1.4 3E-05 48.0 9.6 42 157-204 118-159 (527)
399 PRK14723 flhF flagellar biosyn 90.5 4.6 0.0001 45.6 13.7 55 158-216 263-318 (767)
400 PRK00440 rfc replication facto 90.5 2.1 4.5E-05 43.1 10.4 41 159-205 103-143 (319)
401 PRK09087 hypothetical protein; 90.4 1.8 3.9E-05 41.6 9.3 18 54-71 45-62 (226)
402 PRK06749 replicative DNA helic 90.3 2.5 5.5E-05 44.7 11.1 31 56-86 189-222 (428)
403 COG3973 Superfamily I DNA and 90.3 0.87 1.9E-05 49.0 7.4 88 20-108 187-290 (747)
404 PRK04328 hypothetical protein; 90.2 0.23 5E-06 48.5 3.1 51 52-103 22-75 (249)
405 PRK13894 conjugal transfer ATP 90.2 0.58 1.3E-05 47.4 6.0 52 39-90 133-190 (319)
406 COG2805 PilT Tfp pilus assembl 90.2 0.22 4.8E-06 49.1 2.8 22 56-77 128-151 (353)
407 PRK09376 rho transcription ter 90.1 1.3 2.8E-05 45.9 8.4 19 51-69 167-185 (416)
408 PRK10867 signal recognition pa 90.1 6.3 0.00014 41.7 13.7 49 56-104 103-158 (433)
409 KOG0347 RNA helicase [RNA proc 90.0 1.1 2.3E-05 47.8 7.7 53 260-316 265-321 (731)
410 PRK11054 helD DNA helicase IV; 90.0 0.53 1.1E-05 52.8 6.0 62 37-100 195-263 (684)
411 TIGR02782 TrbB_P P-type conjug 90.0 0.94 2E-05 45.5 7.2 53 38-90 116-174 (299)
412 TIGR02785 addA_Gpos recombinat 90.0 0.75 1.6E-05 55.4 7.6 61 38-100 1-67 (1232)
413 cd03115 SRP The signal recogni 89.9 15 0.00032 33.3 14.7 49 157-209 81-130 (173)
414 TIGR00959 ffh signal recogniti 89.8 11 0.00023 39.9 15.2 51 55-105 101-158 (428)
415 TIGR03880 KaiC_arch_3 KaiC dom 89.7 3.6 7.8E-05 39.2 10.9 50 53-103 16-68 (224)
416 TIGR01073 pcrA ATP-dependent D 89.6 0.51 1.1E-05 53.6 5.7 63 37-101 3-72 (726)
417 PRK14950 DNA polymerase III su 89.6 2 4.3E-05 47.5 10.1 41 157-203 119-159 (585)
418 COG0593 DnaA ATPase involved i 89.6 2.9 6.4E-05 43.6 10.6 16 53-68 113-128 (408)
419 PRK07773 replicative DNA helic 89.6 1.5 3.2E-05 51.0 9.5 144 56-203 220-377 (886)
420 TIGR02397 dnaX_nterm DNA polym 89.6 2.8 6E-05 43.0 10.6 17 54-70 37-53 (355)
421 TIGR01242 26Sp45 26S proteasom 89.5 2.7 5.9E-05 43.4 10.6 19 53-71 156-174 (364)
422 PHA00350 putative assembly pro 89.4 1.6 3.4E-05 45.5 8.5 24 56-79 4-31 (399)
423 KOG0339 ATP-dependent RNA heli 89.3 3 6.5E-05 44.0 10.2 70 259-332 297-376 (731)
424 cd00983 recA RecA is a bacter 89.3 1.7 3.8E-05 44.0 8.5 96 46-171 42-146 (325)
425 TIGR02640 gas_vesic_GvpN gas v 89.2 0.65 1.4E-05 45.7 5.3 40 45-84 13-52 (262)
426 PTZ00361 26 proteosome regulat 89.1 2.9 6.2E-05 44.3 10.3 21 53-73 217-237 (438)
427 COG3267 ExeA Type II secretory 89.1 3.1 6.7E-05 40.3 9.5 38 50-87 47-87 (269)
428 TIGR03499 FlhF flagellar biosy 89.0 1.9 4.2E-05 42.9 8.6 18 54-71 195-212 (282)
429 PRK13880 conjugal transfer cou 88.9 0.27 5.8E-06 54.7 2.7 55 54-108 176-232 (636)
430 TIGR00767 rho transcription te 88.9 1.3 2.8E-05 46.0 7.3 21 51-71 166-186 (415)
431 PRK14971 DNA polymerase III su 88.9 2.2 4.8E-05 47.3 9.7 48 156-209 119-166 (614)
432 PRK00080 ruvB Holliday junctio 88.8 1.7 3.8E-05 44.2 8.4 18 54-71 52-69 (328)
433 TIGR02012 tigrfam_recA protein 88.8 1.8 3.8E-05 43.9 8.2 88 54-171 56-146 (321)
434 PRK13851 type IV secretion sys 88.7 0.67 1.5E-05 47.5 5.2 41 50-90 159-201 (344)
435 CHL00195 ycf46 Ycf46; Provisio 88.7 2.2 4.7E-05 45.9 9.2 19 53-71 259-277 (489)
436 TIGR00416 sms DNA repair prote 88.5 7.1 0.00015 41.7 13.0 57 45-102 81-145 (454)
437 COG2804 PulE Type II secretory 88.5 0.53 1.1E-05 49.9 4.3 31 39-69 242-274 (500)
438 KOG0733 Nuclear AAA ATPase (VC 88.4 4.6 0.0001 43.8 11.1 54 14-70 186-240 (802)
439 TIGR03346 chaperone_ClpB ATP-d 88.4 3.7 8.1E-05 47.6 11.6 18 54-71 195-212 (852)
440 PRK14954 DNA polymerase III su 88.1 1.9 4.2E-05 47.7 8.6 42 156-203 125-166 (620)
441 cd01128 rho_factor Transcripti 88.0 1.5 3.3E-05 42.7 7.0 20 50-69 13-32 (249)
442 PRK13900 type IV secretion sys 88.0 0.76 1.7E-05 46.9 5.1 40 51-90 158-199 (332)
443 TIGR00678 holB DNA polymerase 87.6 6.2 0.00013 36.4 10.6 41 156-202 94-134 (188)
444 PRK10865 protein disaggregatio 87.6 4.5 9.8E-05 46.8 11.5 18 54-71 200-217 (857)
445 cd00268 DEADc DEAD-box helicas 87.4 3.3 7.1E-05 38.6 8.7 74 257-334 68-151 (203)
446 PRK09302 circadian clock prote 87.4 2.1 4.7E-05 46.4 8.4 102 53-172 273-377 (509)
447 TIGR02237 recomb_radB DNA repa 87.3 3.2 6.9E-05 39.1 8.6 35 53-87 12-49 (209)
448 TIGR02238 recomb_DMC1 meiotic 87.2 2.3 4.9E-05 43.0 7.9 43 46-88 84-140 (313)
449 PF05729 NACHT: NACHT domain 87.2 6.5 0.00014 34.8 10.3 44 159-202 82-129 (166)
450 PHA03368 DNA packaging termina 87.1 5 0.00011 44.3 10.7 75 23-101 228-307 (738)
451 PF01637 Arch_ATPase: Archaeal 87.0 3 6.4E-05 39.4 8.4 17 53-69 20-36 (234)
452 cd01130 VirB11-like_ATPase Typ 87.0 0.84 1.8E-05 42.3 4.4 32 38-69 9-41 (186)
453 PF01443 Viral_helicase1: Vira 87.0 1.1 2.4E-05 42.9 5.3 21 312-332 184-204 (234)
454 TIGR00614 recQ_fam ATP-depende 86.9 1.6 3.5E-05 46.8 7.1 59 259-317 52-110 (470)
455 PF10593 Z1: Z1 domain; Inter 86.9 2.4 5.3E-05 41.0 7.6 89 282-375 110-203 (239)
456 PHA03333 putative ATPase subun 86.8 11 0.00024 41.9 13.1 50 51-100 185-238 (752)
457 CHL00095 clpC Clp protease ATP 86.8 4.2 9E-05 47.0 10.7 18 54-71 201-218 (821)
458 PRK10733 hflB ATP-dependent me 86.6 5.9 0.00013 44.4 11.5 19 54-72 186-204 (644)
459 PRK06647 DNA polymerase III su 86.6 5.5 0.00012 43.8 10.9 43 156-204 117-159 (563)
460 COG1223 Predicted ATPase (AAA+ 86.6 2.6 5.6E-05 40.9 7.3 39 53-93 151-190 (368)
461 PRK07471 DNA polymerase III su 86.5 7.2 0.00016 40.4 11.3 44 156-205 139-182 (365)
462 cd01129 PulE-GspE PulE/GspE Th 86.3 1.6 3.4E-05 43.0 6.1 31 39-69 64-96 (264)
463 TIGR01054 rgy reverse gyrase. 86.2 1.4 3E-05 52.5 6.5 77 258-334 121-207 (1171)
464 PF08423 Rad51: Rad51; InterP 86.1 3.2 6.9E-05 40.7 8.1 44 45-88 25-82 (256)
465 PRK11634 ATP-dependent RNA hel 85.7 2.8 6E-05 46.8 8.3 71 258-332 74-155 (629)
466 COG0556 UvrB Helicase subunit 85.7 11 0.00024 40.3 11.9 118 77-211 445-565 (663)
467 PF13671 AAA_33: AAA domain; P 85.6 6.4 0.00014 34.2 9.1 16 56-71 2-17 (143)
468 KOG1513 Nuclear helicase MOP-3 85.4 1.3 2.8E-05 49.0 5.2 75 301-375 850-935 (1300)
469 PF00437 T2SE: Type II/IV secr 85.3 0.9 1.9E-05 44.8 3.8 39 52-90 126-167 (270)
470 KOG0729 26S proteasome regulat 85.2 12 0.00026 36.5 11.0 76 15-93 174-250 (435)
471 KOG1513 Nuclear helicase MOP-3 85.0 0.93 2E-05 50.1 3.9 165 37-206 263-457 (1300)
472 PRK08451 DNA polymerase III su 84.8 7.4 0.00016 42.3 10.7 42 157-204 116-157 (535)
473 TIGR01547 phage_term_2 phage t 84.7 5.4 0.00012 41.7 9.6 35 56-90 4-44 (396)
474 PRK10436 hypothetical protein; 84.6 1.8 3.8E-05 46.3 5.9 31 39-69 202-234 (462)
475 PLN03187 meiotic recombination 84.6 3 6.5E-05 42.7 7.3 35 54-88 127-170 (344)
476 PF05673 DUF815: Protein of un 84.5 4.2 9E-05 39.4 7.7 63 42-104 34-107 (249)
477 TIGR03345 VI_ClpV1 type VI sec 84.5 8.9 0.00019 44.4 11.9 29 43-71 192-226 (852)
478 PF02572 CobA_CobO_BtuR: ATP:c 84.5 10 0.00022 34.7 9.9 132 56-207 6-142 (172)
479 TIGR01389 recQ ATP-dependent D 84.2 2.8 6E-05 46.5 7.5 73 259-331 54-132 (591)
480 COG0542 clpA ATP-binding subun 84.2 2.8 6E-05 47.2 7.2 27 42-68 495-536 (786)
481 PRK14970 DNA polymerase III su 83.9 14 0.0003 38.1 12.2 17 54-70 40-56 (367)
482 PRK08058 DNA polymerase III su 83.6 5.5 0.00012 40.6 8.8 48 156-209 108-155 (329)
483 COG0465 HflB ATP-dependent Zn 83.5 7.4 0.00016 42.6 10.0 55 13-70 145-200 (596)
484 PF01078 Mg_chelatase: Magnesi 83.5 1.5 3.2E-05 41.3 4.1 25 51-75 20-45 (206)
485 KOG1806 DEAD box containing he 83.1 1.7 3.8E-05 49.4 5.1 68 37-104 737-809 (1320)
486 KOG0745 Putative ATP-dependent 83.0 1.2 2.6E-05 46.2 3.6 26 54-79 227-253 (564)
487 KOG0727 26S proteasome regulat 83.0 10 0.00022 36.7 9.5 15 54-68 190-204 (408)
488 COG0630 VirB11 Type IV secreto 82.6 3.6 7.8E-05 41.6 6.9 54 37-90 126-182 (312)
489 TIGR02533 type_II_gspE general 82.6 1.4 3.1E-05 47.3 4.2 31 39-69 226-258 (486)
490 KOG0733 Nuclear AAA ATPase (VC 82.5 12 0.00026 40.8 10.7 55 15-70 508-562 (802)
491 TIGR03345 VI_ClpV1 type VI sec 82.3 9.1 0.0002 44.3 10.8 29 42-70 570-613 (852)
492 TIGR00602 rad24 checkpoint pro 82.1 6.9 0.00015 43.5 9.3 18 55-72 112-129 (637)
493 PF12846 AAA_10: AAA-like doma 82.1 1.3 2.9E-05 43.8 3.6 38 53-90 1-41 (304)
494 COG0305 DnaB Replicative DNA h 82.1 8.4 0.00018 40.6 9.4 143 54-200 196-353 (435)
495 KOG1001 Helicase-like transcri 82.0 0.23 5E-06 55.1 -2.1 118 243-360 521-643 (674)
496 KOG2543 Origin recognition com 82.0 7.1 0.00015 40.1 8.5 48 158-207 115-162 (438)
497 PF01745 IPT: Isopentenyl tran 81.9 1.4 2.9E-05 41.7 3.2 27 56-82 4-30 (233)
498 PRK09519 recA DNA recombinatio 81.6 6.8 0.00015 44.4 9.1 116 26-171 14-151 (790)
499 TIGR02655 circ_KaiC circadian 81.6 5.2 0.00011 43.2 8.1 51 52-103 20-74 (484)
500 PRK06305 DNA polymerase III su 81.5 4.7 0.0001 43.1 7.6 40 157-202 120-159 (451)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.9e-89 Score=711.34 Aligned_cols=405 Identities=43% Similarity=0.740 Sum_probs=370.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009675 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (529)
Q Consensus 25 ~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~ 104 (529)
.+...|+++||+.+|||.|+++|+++++|+|+++.+|||+|||+|||+|++...|.||||+|+.+||+||+++|+..|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHH
Q 009675 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l 184 (529)
+..++++.+..++..++..+..+. ++++|.+||.+.++.+++.+. ...+.++|||||||+|+|||||||+|.+|
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 999999999999999999999886 999999999999998888777 44699999999999999999999999999
Q ss_pred HHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEE
Q 009675 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264 (529)
Q Consensus 185 ~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf 264 (529)
+.++..+|++|+++||||+++.++.||...|++..+.++..+++|||++|.++.+......+..+.+ +.....+++|||
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIY 236 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999988643344443333 225667789999
Q ss_pred eCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHH
Q 009675 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (529)
Q Consensus 265 ~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q 344 (529)
|.||+.+|.++++|.+.|+.+..|||||+.++|+.++++|..++++|+|||.|||||||+||||+||||++|.|+|+|||
T Consensus 237 c~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQ 316 (590)
T COG0514 237 CLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQ 316 (590)
T ss_pred EeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc---ccchHHHHhcccCCCC
Q 009675 345 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNRYWDV 421 (529)
Q Consensus 345 ~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Crr~~il~~~y~~~ 421 (529)
++|||||||.++.|+++|++.|....+++++.... ..+..+....++.+|+.| ..|||..+|+
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~------ 382 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLK------ 382 (590)
T ss_pred HHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHH------
Confidence 99999999999999999999999998888876543 334456677888999988 6699999999
Q ss_pred CCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCChhhhHHHHHH
Q 009675 422 WPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGEL 471 (529)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~~~~~~~~~~ 471 (529)
|| ||. .+..|++ ||+|.++....+..++.
T Consensus 383 -----------------yf--ge~-~~~~c~~-c~~c~~~~~~~d~t~~a 411 (590)
T COG0514 383 -----------------YF--GED-EPEPCGN-CDNCLDTPKQFDGTIEA 411 (590)
T ss_pred -----------------hc--Ccc-ccccccC-CCcccCcchhcchHHHH
Confidence 99 998 6778995 99999987655554443
No 2
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-88 Score=660.69 Aligned_cols=427 Identities=39% Similarity=0.689 Sum_probs=385.7
Q ss_pred hHHHHHHHHHhcCCCCCc-HHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r-~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
...+.++|++.||+++|. +.|++++..+.++ +||+|+||||+|||||||||+|..++++||++|+++|++||++.|..
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 456789999999999997 7899999999876 69999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHH
Q 009675 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (529)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~ 180 (529)
+.+++..+++..+..++..+..++...++.++++|.|||..+|.+|...|..+.+...|.++|||||||+++|||||||+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCe-EEeccCCCCccEEEEEecCchhhHHHHHHHHHHhc---
Q 009675 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--- 256 (529)
Q Consensus 181 y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~--- 256 (529)
|..|+.+++.++++|.++||||+++.|.+||...|.+.+|+ ++.++..|.|++|.+.+++...+-+..|.++-...
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998 56677889999999999988888888887765431
Q ss_pred ----------CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC
Q 009675 257 ----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (529)
Q Consensus 257 ----------~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~ 326 (529)
..+++||||.||+.||+++-.|...|+++..||+||...+|.+++++|++++++||+||..||||+|+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 2468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc-
Q 009675 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV- 405 (529)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 405 (529)
|||||||++|.++..|||++|||||||+++.|-+||+..|...+.++++....+.. .....+...+..+..|..|+++
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklr-ek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLR-EKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHH-HhcchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987654321 1112222335566778888888
Q ss_pred --ccchHHHHhcccCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCChhhhHHHHHHHHHHhh
Q 009675 406 --AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQ 477 (529)
Q Consensus 406 --~~Crr~~il~~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~~~~~~~~~~~~~~~~ 477 (529)
..|||..|.+ || |+..+ +|..+||.|+.|....+.++.....+..
T Consensus 403 E~~~CRH~~ia~-----------------------fF--gD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~~s 449 (641)
T KOG0352|consen 403 ESARCRHVSIAS-----------------------FF--DDTEC--PCKTNCDYCRDPTKTIRNVEAFINSEAS 449 (641)
T ss_pred HHcccchHHHHH-----------------------hc--CCCCC--CCCCCccccCCHHHHHHHHHHHHHhhhh
Confidence 9999999999 99 88755 6888888888776665555555555543
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.3e-81 Score=689.33 Aligned_cols=418 Identities=39% Similarity=0.679 Sum_probs=371.2
Q ss_pred CCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009675 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (529)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l 98 (529)
.+.....+...++.+||+.+|||.|+++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||+||+..|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 57888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCC
Q 009675 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (529)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~f 177 (529)
...|+++..++++....+...+...+......++++|+|||.+.... ++..+......+.+.+||||||||+++|||+|
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 99999999999999988888877777664456999999999988754 45555555555679999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhc-
Q 009675 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256 (529)
Q Consensus 178 r~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~- 256 (529)
||+|..|..++..+|++|+++||||+++.+..++...|++..+.++..+++|||++|.+..+. ......+.++++..
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999988764 23456677777653
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p 336 (529)
.+.++||||+|++.|+.+++.|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCC------ccchHHhhhHHHHHHHHHhhhc----c
Q 009675 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQVLDV----A 406 (529)
Q Consensus 337 ~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~----~ 406 (529)
+|++.|+||+|||||+|.+|.|++||+..|...++.++........+ ..+......+...++|.+|+.| .
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~ 838 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEV 838 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999998754322111 0011122345567889999999 3
Q ss_pred cchHHHHhcccCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCChh
Q 009675 407 GKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 463 (529)
Q Consensus 407 ~Crr~~il~~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~~ 463 (529)
.|||+.||. || ||.+....|+++||||..+..
T Consensus 839 ~CRR~~lL~-----------------------yF--GE~~~~~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 839 DCRRFLQLV-----------------------HF--GEKFDSTNCKKTCDNCSSSKS 870 (1195)
T ss_pred hhHHHHHHH-----------------------Hc--ccccCccCCCCCCCCCCCCCc
Confidence 799999999 99 998766689988999988654
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3e-82 Score=697.52 Aligned_cols=448 Identities=45% Similarity=0.736 Sum_probs=393.6
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
.++....|...||++.|||.|.++|.+++.|+|++|.||||+|||+|||+|++..++.+|||+|+++||+||+..|...+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHH
Q 009675 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (529)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y 181 (529)
|++.++++.++..+...++..+..+.+.++++|+|||.++..+ +...+..+...+.+.++|||||||+++|||||||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 9999999999999999999999999889999999999888765 444566666667799999999999999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHH-HhcCCce
Q 009675 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-KANGDTC 260 (529)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l-~~~~~~~ 260 (529)
..|+.++.++|.+|+|+|||||++.+++||+..|++.++.++..+|+|+|++|+|..+..... ...+...+ ..+++++
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~-~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDA-LLDILEESKLRHPDQS 487 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccc-hHHHHHHhhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999875333 33334444 4467889
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHH
Q 009675 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (529)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~ 340 (529)
+||||.++.+|+.++..|+..|+.+..||+||++++|..+++.|..++++|+|||.|||||||+||||+||||++|+|+|
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhH-HHHHHHHHhhhc----ccchHHHHhc
Q 009675 341 AFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQVLDV----AGKRFSRVLG 415 (529)
Q Consensus 341 ~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~----~~Crr~~il~ 415 (529)
.|||++|||||||.++.|++||+..|...++.++....... ...+ .....+.+|+.| +.|||+.++.
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~--------~~~~~~~~~~l~~~~~yCen~t~crr~~~l~ 639 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLS--------GVKKFTRLLELVQVVTYCENETDCRRKQILE 639 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcccccc--------chhhccchhhHHHHHHhhcCccchhHHHHHH
Confidence 99999999999999999999999999999999998762211 1112 456788899999 8999999999
Q ss_pred ccCCCCCCCCCccchhhhhhcccccccCCcCCCCccc--cCCCCCCCChhhhHHHHHHHHHHhhcCCcceeeeccccccC
Q 009675 416 NRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTD 493 (529)
Q Consensus 416 ~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~--~~Cd~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (529)
|| ||.+....|. +.||+|.....+.-...+++....+.......+.++++.+.
T Consensus 640 -----------------------~f--ge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~~~~~~t~ 694 (941)
T KOG0351|consen 640 -----------------------YF--GEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYTLSERFTL 694 (941)
T ss_pred -----------------------hc--ccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeeeccchhhh
Confidence 99 9998888999 79999999887766666665555544444444444333333
Q ss_pred CCCcccccccc
Q 009675 494 GGQYSEFWNRD 504 (529)
Q Consensus 494 ~~~~~~~~~~~ 504 (529)
.+....||+..
T Consensus 695 ~~~~~~~~g~~ 705 (941)
T KOG0351|consen 695 AAIEDVGGGTL 705 (941)
T ss_pred hhHHhcccccH
Confidence 33344445433
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.3e-80 Score=592.41 Aligned_cols=406 Identities=39% Similarity=0.726 Sum_probs=381.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~ 96 (529)
..+++.+++..+.|++.|..+.|||.|.++|++.+.|+|+++++|||+|||+|||+|+|...+.+|||+|+++||++|..
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil 152 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQIL 152 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEecccccccCCC
Q 009675 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (529)
Q Consensus 97 ~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~ 175 (529)
.|+.+||.+..++...+..+...+...+......++++|+|||.++.. .++++|.+.+..+.+.+|.|||+||.++|||
T Consensus 153 ~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh 232 (695)
T KOG0353|consen 153 QLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH 232 (695)
T ss_pred HHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc
Confidence 999999999999999999999888888888888999999999988864 6899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCch-hhHHHHHHHHHH
Q 009675 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLK 254 (529)
Q Consensus 176 ~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~-~~~~~~l~~~l~ 254 (529)
||||+|..|+-+++.|+++|+++||||++..+..|....|++.....++.+|+|||+.|+|+.++.. ++-++++.++++
T Consensus 233 dfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~ 312 (695)
T KOG0353|consen 233 DFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIK 312 (695)
T ss_pred ccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 456678888887
Q ss_pred h-cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEe
Q 009675 255 A-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (529)
Q Consensus 255 ~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~ 333 (529)
. ..++.+||||-++++||.++..|+..|+.+..||+.|.+++|.-+...|..|+++|+|||.+||||||+|+||+|||.
T Consensus 313 ~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 313 GDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec
Confidence 5 567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHH-------------------------------------------HHcccCCCCCCceEEEEEecccHHHH
Q 009675 334 NIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRM 370 (529)
Q Consensus 334 ~~p~s~~~y~Q-------------------------------------------~~GRagR~G~~g~~i~~~~~~d~~~~ 370 (529)
++|+|++.||| ++||||||+.++.|++||...|..+.
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 99999999999 89999999999999999999998887
Q ss_pred HHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc----ccchHHHHhcccCCCCCCCCCccchhhhhhcccccccCCcC
Q 009675 371 EFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV----AGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQI 446 (529)
Q Consensus 371 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~Crr~~il~~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 446 (529)
..++... ....++|-.|+.| ..|||..+.+ || .|.+
T Consensus 473 ssmv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~lae-----------------------hf--de~w 512 (695)
T KOG0353|consen 473 SSMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAE-----------------------HF--DEAW 512 (695)
T ss_pred HHHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHH-----------------------HH--Hhhc
Confidence 7765432 2345778899999 8999999999 99 9999
Q ss_pred CCCccccCCCCCCCCh
Q 009675 447 PVSLCKNSCDACKHPN 462 (529)
Q Consensus 447 ~~~~c~~~Cd~c~~~~ 462 (529)
.+..|.++||+|...+
T Consensus 513 ~~~~c~k~cd~c~~~n 528 (695)
T KOG0353|consen 513 EPEACNKMCDNCCKDN 528 (695)
T ss_pred CHHHHHHHhhhhccCc
Confidence 9999999999997643
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.8e-73 Score=620.67 Aligned_cols=406 Identities=40% Similarity=0.690 Sum_probs=359.2
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
+++.+...+.|++.|||++|||+|+++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~ 86 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLL 86 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHH
Confidence 55666777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHH
Q 009675 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (529)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~ 179 (529)
..|+.+..+++.........+...+..+. .+++|+|||.+.+..+...+. ...+++||||||||+++|||+|||
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~----~~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLA----HWNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHh----hCCCCEEEEeCccccccccCcccH
Confidence 99999999999988887777777776654 899999999998877665543 336899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCc
Q 009675 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259 (529)
Q Consensus 180 ~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~ 259 (529)
.|..|..++..+|++|++++|||+++.+..++...+++..|.+...+++++|+.+.+..+. .....+..++....+.
T Consensus 161 ~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~ 237 (607)
T PRK11057 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRGK 237 (607)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999998876553 3456777788777788
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCH
Q 009675 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (529)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~ 339 (529)
++||||+|++.|+.+++.|++.|+.+..|||+|++++|.++++.|.+|+++|||||++++||||+|+|++||||++|.|.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~ 317 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc---ccchHHHHhcc
Q 009675 340 EAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGN 416 (529)
Q Consensus 340 ~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Crr~~il~~ 416 (529)
++|+||+|||||+|.+|.|++||++.|...++.++...... ........++..|..| ..|||+.+|+
T Consensus 318 ~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l~- 387 (607)
T PRK11057 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLLN- 387 (607)
T ss_pred HHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHHH-
Confidence 99999999999999999999999999998888887643221 1112233456666666 8899999999
Q ss_pred cCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCChhhhHHHHH
Q 009675 417 RYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGE 470 (529)
Q Consensus 417 ~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~~~~~~~~~ 470 (529)
|| ||.+. ..|+ .||||.++....+.+++
T Consensus 388 ----------------------yf--~e~~~-~~c~-~cd~c~~~~~~~~~~~~ 415 (607)
T PRK11057 388 ----------------------YF--GEGRQ-EPCG-NCDICLDPPKQYDGLED 415 (607)
T ss_pred ----------------------Hh--CCCCC-CCCC-CCCCCCCcccccccHHH
Confidence 99 99754 3576 79999997755454443
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.7e-73 Score=603.60 Aligned_cols=371 Identities=47% Similarity=0.816 Sum_probs=331.0
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009675 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (529)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (529)
.|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++..++.+|||+|+++|+.||++.++.+|+++..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l 187 (529)
++.........+...+..+. .+++|+|||.+.+.. +...+. ....+++|||||||++++|||+||+.|..|..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 99988887777777775554 899999999988765 444442 456799999999999999999999999999999
Q ss_pred HHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHH-hcCCceEEEEeC
Q 009675 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (529)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IIf~~ 266 (529)
+..+|++|+++||||+++.+..++...+++..+.++..+++++|+.+.+..+.. +.+..+..++. ..++.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999998877642 45667777776 455667899999
Q ss_pred CcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHH
Q 009675 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (529)
Q Consensus 267 s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~ 346 (529)
|++.|+.+++.|++.|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc---ccchHHHHhc
Q 009675 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLG 415 (529)
Q Consensus 347 GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Crr~~il~ 415 (529)
|||||+|.+|.|++||++.|...++.++....... .. ......+..|..| ..|||..+++
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~crr~~l~~ 377 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ------QR---TYKLKLYEMMEYCLNSSTCRRLILLS 377 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh------HH---HHHHHHHHHHHHHhccccCHHHHHHH
Confidence 99999999999999999999999999887543211 11 1122334444444 8899999999
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.5e-73 Score=621.24 Aligned_cols=393 Identities=40% Similarity=0.691 Sum_probs=354.1
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009675 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (529)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~ 106 (529)
.+.|++.|||++|||.|.++|+++++|+|++++||||+|||+||++|++...+.++||+|+++|+.||++.|+.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.+++.........+...+..+. .+++|+|||.+.++.+...+ ....+++||||||||+++|||+|||.|..|..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999999888888777777665 89999999999887665444 34579999999999999999999999999999
Q ss_pred HHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeC
Q 009675 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~ 266 (529)
++..+|+.|++++|||+++.+..++...+++..+..+..+++++|+.+.+.... ++...+.++++...+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999887654 45667788888777788999999
Q ss_pred CcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHH
Q 009675 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (529)
Q Consensus 267 s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~ 346 (529)
|++.|+.+++.|...|+++..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|++.|+||+
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc---ccchHHHHhcccCCCCCC
Q 009675 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFSRVLGNRYWDVWP 423 (529)
Q Consensus 347 GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Crr~~il~~~y~~~~~ 423 (529)
|||||+|.++.|+++|++.|...+++++...... ..........+.+|..| ..|||..+++
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~-------- 376 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILR-------- 376 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHH--------
Confidence 9999999999999999999999988887653321 11223345667777777 8999999999
Q ss_pred CCCccchhhhhhcccccccCCcCCCCccccCCCCCCCChh
Q 009675 424 VLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNL 463 (529)
Q Consensus 424 ~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~~ 463 (529)
|| ||.. ...|+ .||||..+..
T Consensus 377 ---------------~f--~~~~-~~~c~-~cd~c~~~~~ 397 (591)
T TIGR01389 377 ---------------YF--GENE-VEPCG-NCDNCLDPPK 397 (591)
T ss_pred ---------------hc--CCCC-CCCCC-CCCCCCCCCc
Confidence 99 8873 45687 7999988654
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-53 Score=446.13 Aligned_cols=343 Identities=19% Similarity=0.238 Sum_probs=274.6
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCeE
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~ 81 (529)
..|+++++++.+.+.|.. +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. +..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 467889999999999998 79999999999999999999999999999999999999998741 3579
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhc
Q 009675 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (529)
Q Consensus 82 lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~ 155 (529)
||++|+++|+.|+.+.+..+ ++.+..+.++........ .+. ...+++++||+.+ ..+. ....
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~---~~~~IlV~TP~~l------~~~l~~~~~~ 154 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLE---SGVDILIGTTGRL------IDYAKQNHIN 154 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc---CCCCEEEECHHHH------HHHHHcCCcc
Confidence 99999999999998877663 567766666655443322 222 2357777777644 2221 2344
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---CCC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNR 229 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r 229 (529)
...+.++||||||++.+|| |... +..+...+| ..+.+++|||++..+.......+. +|..+... ...
T Consensus 155 l~~v~~lViDEad~l~~~~--f~~~---i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~--~p~~i~v~~~~~~~ 227 (423)
T PRK04837 155 LGAIQVVVLDEADRMFDLG--FIKD---IRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMN--NPEYVEVEPEQKTG 227 (423)
T ss_pred cccccEEEEecHHHHhhcc--cHHH---HHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCC--CCEEEEEcCCCcCC
Confidence 6679999999999999998 5544 444555565 345789999999988776555443 44433221 112
Q ss_pred CccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 230 ~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
.++...+.. ....++...|..+++.....++||||++++.|+.+++.|...|+.+..+||+|++++|..+++.|++|++
T Consensus 228 ~~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~ 306 (423)
T PRK04837 228 HRIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDL 306 (423)
T ss_pred CceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCC
Confidence 233333332 2234667778888877777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
+|||||+++++|||+|+|++|||||+|.+.+.|+||+||+||+|+.|.+++|+.+.|...+..+.+...
T Consensus 307 ~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 307 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998888877755443
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-53 Score=439.61 Aligned_cols=344 Identities=25% Similarity=0.375 Sum_probs=279.5
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEE
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lV 83 (529)
.|..+++++++...|+. -||+.|+|+|.+.++.+++|+|++..|.|||||||+|++|++.+ ++++||
T Consensus 92 ~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 56778899999999998 59999999999999999999999999999999999999999853 678999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccC
Q 009675 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~ 157 (529)
++|||+|+.|....+.++ ++...++.++.....+.. ++..+ .++ .++|||++..+.+ ..+++
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---~l~~g---vdi------viaTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---DLERG---VDV------VIATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHH---HHhcC---CcE------EEeCChHHHHHHHcCCcccc
Confidence 999999999999888885 344667777766654432 23222 444 6777887777754 44566
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhC-C-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-C----CCC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-P-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F----NRP 230 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~----~r~ 230 (529)
++.++|+||||.|++.| |++..++| .+.. + ..|.+++|||.+..++.....++. ++..+... . ...
T Consensus 239 ~v~ylVLDEADrMldmG--Fe~qI~~I---l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~ 311 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMG--FEPQIRKI---LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANH 311 (519)
T ss_pred ceeEEEeccHHhhhccc--cHHHHHHH---HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhc
Confidence 89999999999999988 88766554 4444 3 457999999999999987777777 44443332 1 223
Q ss_pred ccEEEEEecCchhhHHHHHHHHHH---hcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 009675 231 NLFYEVRYKDLLDDAYADLCSVLK---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (529)
Q Consensus 231 nl~~~v~~~~~~~~~~~~l~~~l~---~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (529)
++...+...+ ...+...|..+|. ....+++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++|
T Consensus 312 ~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 312 NIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred chhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC
Confidence 3433333333 2334444444443 34567899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccC
Q 009675 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (529)
Q Consensus 308 ~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (529)
+..|||||++++||||+|+|++||+||+|.++|.|+||+||+||.|+.|.+++|+...+......+++.....
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999988887777665443
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-54 Score=414.48 Aligned_cols=353 Identities=22% Similarity=0.279 Sum_probs=289.9
Q ss_pred CCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeE
Q 009675 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (529)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~ 81 (529)
++..++...|.++++++++++++++ .||..|+++|+++||.++.|+|++..|.||||||.+|++|++.+ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 5557888899999999999999998 69999999999999999999999999999999999999999874 5689
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hh
Q 009675 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IH 154 (529)
Q Consensus 82 lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~ 154 (529)
+|++|+|+|+.|+.+.+..+ |+.+..+.++......... .+.. ..+ +++|||.+.++.. ..
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~----L~kk--Phi------lVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ----LSKK--PHI------LVATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH----hhcC--CCE------EEeCcHHHHHHHHhccCc
Confidence 99999999999999998886 5667777777655443221 1223 333 5677776554432 44
Q ss_pred ccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC---CC
Q 009675 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RP 230 (529)
Q Consensus 155 ~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~ 230 (529)
+...+.++|+||||++.+.. |.+... .+.+.+| +.+.+++|||.+..+.+.. ...+.+|..+..+.. -+
T Consensus 201 ~le~lk~LVlDEADrlLd~d--F~~~ld---~ILk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMD--FEEELD---YILKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhhh--hHHHHH---HHHHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchH
Confidence 55668899999999999854 765544 4555555 7899999999999998844 555667776654422 12
Q ss_pred ccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 009675 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (529)
Q Consensus 231 nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (529)
.+...+.... ...+-..|..+++...+.+.||||+|...+..++-.|+..|+.+..+||.|+++.|.-.++.|++|..+
T Consensus 274 ~lkQ~ylfv~-~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 274 HLKQTYLFVP-GKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred HhhhheEecc-ccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc
Confidence 2322222211 124556788888888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCC
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (529)
|||||++++||+|+|.|++|||||+|.+..+|+||+||+||.|.+|.++.+++..|.+.+.+|+...+.+.
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999888877666543
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.4e-52 Score=448.21 Aligned_cols=346 Identities=22% Similarity=0.298 Sum_probs=270.4
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEE
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLV 83 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lV 83 (529)
..|+++++.+.+++.|++ .||.+|+|+|.++|+.+++|+|++++||||||||++|++|++.. ++.+||
T Consensus 130 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 455667889999999997 69999999999999999999999999999999999999998742 467999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccC
Q 009675 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~ 157 (529)
|+||++|+.|+.+.++.++ +....+.++....... ..+.. ..+++++||+.+ ..+. ....+.
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~---~~~IlVaTPgrL------~d~l~~~~~~l~ 276 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRR---GVEILIACPGRL------IDFLESNVTNLR 276 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHc---CCCEEEECHHHH------HHHHHcCCCChh
Confidence 9999999999999998864 4455555555443322 22222 256776666543 2222 233456
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-C---CCCccE
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRPNLF 233 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~---~r~nl~ 233 (529)
.+++|||||||++.+|| |++.+..+.. ...++.+++++|||.+..+.......+ ...+..+... . ...++.
T Consensus 277 ~v~~lViDEAd~mld~g--f~~~i~~il~--~~~~~~q~l~~SAT~p~~v~~l~~~l~-~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLMWSATWPKEVQSLARDLC-KEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hCcEEEeehHHhhhhcc--hHHHHHHHHH--hCCCCCeEEEEEeCCCHHHHHHHHHHh-ccCCEEEEECCCccccCCCee
Confidence 79999999999999998 7776555522 233678999999999887765433333 2334433221 1 123444
Q ss_pred EEEEecCchhhHHHHHHHHHHhc--CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 234 YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
..+..... .++...|.+++... .+.++||||++++.|+.+++.|+..|+.+..+||++++++|..+++.|++|+.+|
T Consensus 352 q~~~~~~~-~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~I 430 (545)
T PTZ00110 352 QEVFVVEE-HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPI 430 (545)
T ss_pred EEEEEEec-hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcE
Confidence 33333221 34455566666543 4678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
||||+++++|||+|+|++|||||+|.+++.|+||+||+||+|+.|.|++|+++.|...++.+++....
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887777665443
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.2e-52 Score=440.26 Aligned_cols=343 Identities=21% Similarity=0.283 Sum_probs=276.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|..+++++.+.+.|.. .||.+|+|+|+++++.+++|+|++++||||+|||++|.+|++.. ...+||++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 458889999999999998 79999999999999999999999999999999999999999864 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccCCccE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~~l~~ 161 (529)
+|+.|+.+.++.+ ++.+..+.++........ .+. ...+++++||+.+ ..+. .......+++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~---~~~~IvV~Tp~rl------~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE---HGAHIIVGTPGRI------LDHLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc---CCCCEEEEChHHH------HHHHHcCCccHHHCCE
Confidence 9999999888874 456666666665544322 222 2366777666644 2222 2233556899
Q ss_pred EEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEec--cCCCCccEEEEEe
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRY 238 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~nl~~~v~~ 238 (529)
||+||||++.++| |...+ ..+...+| ..+++++|||+++.+.......+ ..|..+.. ....+++...+..
T Consensus 151 lViDEad~~l~~g--~~~~l---~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~i~~~~~~ 223 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDAI---DAIIRQAPARRQTLLFSATYPEGIAAISQRFQ--RDPVEVKVESTHDLPAIEQRFYE 223 (460)
T ss_pred EEEECHHHHhCcC--cHHHH---HHHHHhCCcccEEEEEEecCcHHHHHHHHHhc--CCCEEEEECcCCCCCCeeEEEEE
Confidence 9999999999988 66544 44555555 67899999999988766444433 34443332 2233334333332
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
.. ..++...+..++....+.++||||+|++.++.+++.|.+.|+.+..+||+|++++|..+++.|++|+++|||||+++
T Consensus 224 ~~-~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 224 VS-PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred eC-cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 22 23477788888887777889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
++|||+|++++||+|++|.+.+.|+||+||+||.|..|.|++++.+.|...+..+.+...
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999888877766544
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-51 Score=445.40 Aligned_cols=345 Identities=16% Similarity=0.222 Sum_probs=277.1
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCeEE
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~l 82 (529)
.|.++++++.+++.|.+ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ..++|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 57888999999999997 79999999999999999999999999999999999999998752 36899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhcc
Q 009675 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~ 156 (529)
||+||++|+.|+.+.+..+ ++.+..+.++........... ...+|+++||+.+.. .+.. ....
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~~-----~l~~~~~~~l 157 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLID-----YVKQHKVVSL 157 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHHH-----HHHhccccch
Confidence 9999999999999998875 456666777766554433221 136787777765422 2211 2345
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCCcc
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNL 232 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl 232 (529)
..+++|||||||++.+|| |... +..+...+| +.++++||||++..+.......+.......+.. .....++
T Consensus 158 ~~v~~lViDEAh~lld~g--f~~~---i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 158 HACEICVLDEADRMFDLG--FIKD---IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARV 232 (572)
T ss_pred hheeeeEecCHHHHhhcc--hHHH---HHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccce
Confidence 568899999999999988 5544 444555555 578999999999988776655553322222221 1222333
Q ss_pred EEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 009675 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (529)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (529)
...+... ....++..+..+++...+.++||||+|++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+++||
T Consensus 233 ~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 233 RQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred eEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3333332 235667778888887777889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 313 VaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
|||+++++|||+|+|++||||++|.+.+.|+||+||+||.|..|.|++|+...+...+..+.+...
T Consensus 312 VaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred EEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999988887777765543
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.9e-51 Score=436.47 Aligned_cols=343 Identities=21% Similarity=0.280 Sum_probs=269.8
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEE
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lV 83 (529)
.|+.+++++.+.+.|.+ +||.+|+|+|.++|+.+++|+|++++||||+|||+||++|++.. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 46778999999999998 79999999999999999999999999999999999999998753 136999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCc
Q 009675 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l 159 (529)
|+||++|+.|+.+.++.+ ++....+.++........ .+. ...+|+++||+.+.... .......+.+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~TP~rL~~~~----~~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR---GGVDVLVATPGRLLDLE----HQNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc---CCCcEEEEChHHHHHHH----HcCCcccccc
Confidence 999999999999998874 455555555555443221 121 23678888877552211 1122345679
Q ss_pred cEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe---ccCCCCccEEE
Q 009675 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYE 235 (529)
Q Consensus 160 ~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~nl~~~ 235 (529)
++|||||||++.+|| |.. .+..+...+| ..+++++|||.++.+.......+. ++..+. .....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~---~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIH---DIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLH--NPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHH---HHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcC--CCeEEEEecccccccceeEE
Confidence 999999999999998 443 3444455555 567999999999887664444443 333222 12223344433
Q ss_pred EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
+...+. ..+...+..++......++||||+++..++.+++.|.+.|+.+..+||+|++++|..+++.|++|+++|||||
T Consensus 224 ~~~~~~-~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVDK-KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcCH-HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 333322 3344555666666666789999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
+++++|||+|+|++||||++|.++++|+||+||+||+|..|.+++++...|...++.+.+..
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l 364 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888877776543
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.9e-51 Score=431.25 Aligned_cols=342 Identities=23% Similarity=0.328 Sum_probs=277.1
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEeC
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lVi~ 85 (529)
.|+.+++.+.+++.|+. .||.+|+++|.++|+++++|+|++++||||+|||+||++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47788999999999998 69999999999999999999999999999999999999999852 36899999
Q ss_pred cHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCcc
Q 009675 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~ 160 (529)
|+++|+.|+.+.+..+ ++....+.++.......... .+ ..+|+++||+.+.. .+. .......++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp~rl~~-----~~~~~~~~~~~v~ 149 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATPGRLLQ-----YIKEENFDCRAVE 149 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEEChHHHHH-----HHHcCCcCcccCC
Confidence 9999999988877763 56777777776665443322 12 35677777764421 121 223456689
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---CCCCccEEEE
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v 236 (529)
+|||||||++.+|| |...+..+ ....+ ..++++||||++.....++...+. ..+..+... ..+.++...+
T Consensus 150 ~lViDEah~~l~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 150 TLILDEADRMLDMG--FAQDIETI---AAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWY 223 (434)
T ss_pred EEEEECHHHHhCCC--cHHHHHHH---HHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEE
Confidence 99999999999998 66665554 33333 568999999998776666666553 344444332 2334455444
Q ss_pred EecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
...+....+...+..+++.....++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 224 ~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd 303 (434)
T PRK11192 224 YRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303 (434)
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 44444456777788888776778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHH
Q 009675 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 317 a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
++++|||+|+|++||||++|.|.+.|+||+||+||+|..|.+++++...|...+..+.+
T Consensus 304 ~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 304 VAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred ccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877776654
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.2e-51 Score=439.19 Aligned_cols=343 Identities=22% Similarity=0.311 Sum_probs=265.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------------CCCeE
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGIV 81 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~-------------~~~~~ 81 (529)
..|+++++++.+.+.|+. .||..|+|+|.++|+.+++|+|++++||||||||++|++|++. .++.+
T Consensus 121 ~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred cCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 446667899999999987 7999999999999999999999999999999999999999874 25689
Q ss_pred EEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhc
Q 009675 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (529)
Q Consensus 82 lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~ 155 (529)
|||+||++|+.|+.+.++.+ ++....+.++....... ..+.. ..+++++||+.+ ..+. ....
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~---~~~IiV~TPgrL------~~~l~~~~~~ 267 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ---GVELIVGTPGRL------IDLLSKHDIE 267 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC---CCCEEEECHHHH------HHHHHcCCcc
Confidence 99999999999988877764 34444444444333221 12222 356766666643 2222 2334
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCCc--c
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN--L 232 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~n--l 232 (529)
.+.+.+|||||||++.+|| |++.+. .+...+++.+++++|||+++.+...... + +.++..+.. ...+++ +
T Consensus 268 l~~v~~lViDEad~ml~~g--f~~~i~---~i~~~l~~~q~l~~SATl~~~v~~l~~~-~-~~~~~~i~~~~~~~~~~~v 340 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERG--FRDQVM---QIFQALSQPQVLLFSATVSPEVEKFASS-L-AKDIILISIGNPNRPNKAV 340 (518)
T ss_pred chheeEEEeecHHHHhhcc--hHHHHH---HHHHhCCCCcEEEEEeeCCHHHHHHHHH-h-CCCCEEEEeCCCCCCCcce
Confidence 5678999999999999998 776544 4556678899999999999987653333 2 234444332 223332 2
Q ss_pred EEEEEecCchhhHHHHHHHHHHhcC--CceEEEEeCCcccHHHHHHHHHh-CCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 233 FYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~--~~~~IIf~~s~~~~e~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
...+..... ..+...+.++++... ..++||||+++..++.+++.|.. .|+.+..+||++++++|..+++.|++|++
T Consensus 341 ~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~ 419 (518)
T PLN00206 341 KQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEV 419 (518)
T ss_pred eEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 222222221 334556666665432 35799999999999999999975 69999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
+|||||++++||||+|+|++|||||+|.++++|+||+|||||.|..|.+++|++.+|...+..+.+...
T Consensus 420 ~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877766665443
No 18
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-51 Score=436.60 Aligned_cols=346 Identities=23% Similarity=0.331 Sum_probs=286.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------CCe-EEEeC
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGI-VLVVS 85 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-------~~~-~lVi~ 85 (529)
...|.++++++.+++.|.+ .||..|+|+|..+|+.++.|+|+++.|+||+|||++|.+|++.+ ... +||++
T Consensus 28 ~~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 28 PPEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 3678899999999999999 69999999999999999999999999999999999999999864 112 89999
Q ss_pred cHHHHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCC
Q 009675 86 PLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~ 158 (529)
|||+|+.|..+.+..+ ++.+..+.++.+...... .+..+ .++ +|+|||++..+.. ......
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~---~~i------vVaTPGRllD~i~~~~l~l~~ 174 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG---VDI------VVATPGRLLDLIKRGKLDLSG 174 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC---CCE------EEECccHHHHHHHcCCcchhh
Confidence 9999999999998874 355667777776655543 33332 445 5566665555533 346677
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---C--CCCcc
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---F--NRPNL 232 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~--~r~nl 232 (529)
+.++|+||||.|.+.| |.++... +....| +.+++++|||.+..+.......+. +|..+... . ..+++
T Consensus 175 v~~lVlDEADrmLd~G--f~~~i~~---I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i 247 (513)
T COG0513 175 VETLVLDEADRMLDMG--FIDDIEK---ILKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKI 247 (513)
T ss_pred cCEEEeccHhhhhcCC--CHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCc
Confidence 9999999999999997 7755544 445555 689999999999977665555554 55444332 1 34556
Q ss_pred EEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 009675 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (529)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (529)
...+.......++...|..+++.....++||||+|+..++.|+..|...|+.+..+||+|++++|.++++.|++|+.+||
T Consensus 248 ~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 248 KQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 66555555444588899999988777789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc-cHHHHHHHHHhccc
Q 009675 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQS 379 (529)
Q Consensus 313 VaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~-d~~~~~~i~~~~~~ 379 (529)
|||++++||||+|+|++|||||+|.+.+.|+||+||+||.|..|.++.|+.+. |...+..+.+....
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~ 395 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLER 395 (513)
T ss_pred EEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986 88888777766443
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.6e-51 Score=434.94 Aligned_cols=349 Identities=18% Similarity=0.246 Sum_probs=276.2
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------
Q 009675 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------- 77 (529)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------------- 77 (529)
......|.++++++.+.++|.+ +||.+|+++|.++|+.+++|+|+++.+|||||||++|++|++..
T Consensus 83 ~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~ 161 (475)
T PRK01297 83 QEGKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMG 161 (475)
T ss_pred ccCCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccC
Confidence 3445578889999999999998 79999999999999999999999999999999999999998753
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~ 152 (529)
..++|||+||++|+.|+.+.++.+ ++....+.++....... ..+... ..+++++||+++.. .+. .
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~-----~~~~~ 231 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLD-----FNQRG 231 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHH-----HHHcC
Confidence 358999999999999999988874 55666666655443322 222222 36788888876521 111 2
Q ss_pred hhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---
Q 009675 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--- 226 (529)
Q Consensus 153 ~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--- 226 (529)
....+.+++|||||||++.++| |.+.+..+ .+.++ +.+++++|||.+..+......++. .+..+...
T Consensus 232 ~~~l~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~~ 304 (475)
T PRK01297 232 EVHLDMVEVMVLDEADRMLDMG--FIPQVRQI---IRQTPRKEERQTLLFSATFTDDVMNLAKQWTT--DPAIVEIEPEN 304 (475)
T ss_pred CcccccCceEEechHHHHHhcc--cHHHHHHH---HHhCCCCCCceEEEEEeecCHHHHHHHHHhcc--CCEEEEeccCc
Confidence 3345678999999999999987 66555444 44443 568999999999887665444433 34433221
Q ss_pred CCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 009675 227 FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (529)
Q Consensus 227 ~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (529)
...+++...+.... ..++...+.+++......++||||++++.++.+++.|...|+.+..+||++++++|.++++.|++
T Consensus 305 ~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 305 VASDTVEQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred CCCCcccEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 12233333332222 23566677777877777789999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 307 g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
|+++|||||+++++|||+|++++||+|++|.|..+|+||+||+||.|..|.+++|++.+|...+..+.+..+
T Consensus 384 G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 384 GKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred CCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999988877777755444
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-50 Score=440.32 Aligned_cols=345 Identities=21% Similarity=0.301 Sum_probs=276.9
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|.+++++++++++|.+ +||.+|+|+|.++|+.+++|+|++++||||+|||++|++|++.. .+.+||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 358888999999999998 69999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
+|+.|+.+.+..+ ++.+..+.++........ .+. ...+|+++||+.+. ..+. .....+.+.+|
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~---~~~~IVVgTPgrl~-----d~l~r~~l~l~~l~~l 153 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR---QGPQIVVGTPGRLL-----DHLKRGTLDLSKLSGL 153 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc---CCCCEEEECHHHHH-----HHHHcCCcchhhceEE
Confidence 9999998887764 566666666655443221 222 23667777776542 2222 23345678999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEec---cCCCCccEEEEEe
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~~ 238 (529)
||||||+++.+| |. ..+..+...+| ..++++||||+++.+......++ .++..+.. ....+++...+..
T Consensus 154 VlDEAd~ml~~g--f~---~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l--~~~~~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 154 VLDEADEMLRMG--FI---EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM--KEPQEVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred EeccHHHHhhcc--cH---HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc--CCCeEEEccCccccCCceEEEEEE
Confidence 999999999988 54 34555666666 67899999999988766444443 34433321 2234444433332
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
.. ...+...|..++......++||||+|+..++.+++.|.+.|+.+..+||+|++++|..+++.|++|+++|||||+++
T Consensus 227 v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ 305 (629)
T PRK11634 227 VW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 (629)
T ss_pred ec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 22 23566778888877777789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
++|||+|+|++|||||+|.+.+.|+||+||+||.|+.|.+++|+.+.|...++.+.+....
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999998888888776543
No 21
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=397.94 Aligned_cols=337 Identities=23% Similarity=0.314 Sum_probs=276.4
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------------CCCe
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------------KPGI 80 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---------------~~~~ 80 (529)
.|+..++..+++..++. .||..|+|+|..+|+..++.+|+|.+|.||||||++|++|++. .++.
T Consensus 246 nwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 246 NWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred ChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 34555788999998887 6999999999999999999999999999999999999998773 2788
Q ss_pred EEEeCcHHHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH--Hhhh
Q 009675 81 VLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIH 154 (529)
Q Consensus 81 ~lVi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l--~~~~ 154 (529)
++|+.|||+|++|+.+.-.+ +|+.++.+.++.+..++. +++--++..+++||+.+..- ...+
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHHHHHHH
Confidence 99999999999998887666 467777777777665542 23333344477788754433 2344
Q ss_pred ccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC------------------------C--CCEEEEeecCChhHH
Q 009675 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP------------------------D--VPILALTATAAPKVQ 208 (529)
Q Consensus 155 ~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~------------------------~--~~ii~lSAT~~~~~~ 208 (529)
.++...++|+|||+.+.++| |.|+|..+.. ..| + .+.+.||||.+|.+.
T Consensus 393 vl~qctyvvldeadrmiDmg--fE~dv~~iL~---~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMG--FEPDVQKILE---QMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HhccCceEeccchhhhhccc--ccHHHHHHHH---hCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 56778999999999999999 8888876532 222 1 468999999999988
Q ss_pred HHHHHHhccCCCeEEeccC---CCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCce
Q 009675 209 KDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (529)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~---~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~ 285 (529)
.....+ +..|+++..++ ..|-+...|..... +++...|.+++++....++|||+|+++.|+.||+.|.+.|+.+
T Consensus 468 rlar~y--lr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~ 544 (673)
T KOG0333|consen 468 RLARSY--LRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKV 544 (673)
T ss_pred HHHHHH--hhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceE
Confidence 754444 45666655433 23344455544433 4568899999999888899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
..|||+-++++|+.+++.|++|..+|||||+++|+|||+|||.+||+||+++|++.|.||+||+||+|+.|.++.|+++.
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~ 624 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA 624 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 009675 366 DRRRMEFI 373 (529)
Q Consensus 366 d~~~~~~i 373 (529)
|-..+..+
T Consensus 625 dt~v~ydL 632 (673)
T KOG0333|consen 625 DTAVFYDL 632 (673)
T ss_pred hhHHHHHH
Confidence 96544333
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.2e-49 Score=412.11 Aligned_cols=345 Identities=20% Similarity=0.288 Sum_probs=268.2
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (529)
...|.++++++.+.+.|.. +||.+|+|+|.++++.+++|+|+++.||||+|||++|++|++.. +.++||++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 3667788999999999987 79999999999999999999999999999999999999998753 5689999999
Q ss_pred HHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 88 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
++|+.|+.+.+..++ +.+....++...... ...+.. ..+++++||+.+.. .+. .....+.+++|
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~Ivv~Tp~~l~~-----~l~~~~~~l~~i~lv 174 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA---GVHMVVGTPGRVYD-----MIDKRHLRVDDLKLF 174 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC---CCCEEEECcHHHHH-----HHHhCCcccccccEE
Confidence 999999988887754 333333333332221 222222 25677777765421 111 22345679999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEe--c-cCCCCccEEEEEe
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK--S-SFNRPNLFYEVRY 238 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~--~-~~~r~nl~~~v~~ 238 (529)
||||||++.++| |+... ..+.+.+ ++.+++++|||+++.+.......+. .+..+. . .....++...+..
T Consensus 175 ViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 247 (401)
T PTZ00424 175 ILDEADEMLSRG--FKGQI---YDVFKKLPPDVQVALFSATMPNEILELTTKFMR--DPKRILVKKDELTLEGIRQFYVA 247 (401)
T ss_pred EEecHHHHHhcc--hHHHH---HHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcC--CCEEEEeCCCCcccCCceEEEEe
Confidence 999999999887 55433 3333443 5789999999999887664444432 333221 1 1222333333333
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
......+...+..+++.....++||||+|++.++.+++.|.+.++.+..+||+|++++|..+++.|++|+++|||||+++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l 327 (401)
T PTZ00424 248 VEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLL 327 (401)
T ss_pred cChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 33323455666777776666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
++|||+|++++||++++|.|...|+||+||+||.|+.|.|++++++.|...+..+.+..
T Consensus 328 ~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~ 386 (401)
T PTZ00424 328 ARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHY 386 (401)
T ss_pred cCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877765543
No 23
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-49 Score=369.15 Aligned_cols=349 Identities=20% Similarity=0.324 Sum_probs=281.8
Q ss_pred CCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEE
Q 009675 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (529)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~l 82 (529)
+.......|.++++.+++++.+-. +||+.|..+|+.||+++++|+||++++..|+|||.+|.+..+.. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 345667789999999999999998 69999999999999999999999999999999999887766653 56799
Q ss_pred EeCcHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhcc
Q 009675 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~ 156 (529)
|++|||+|+.|.-+.+..+| +.+....++....+.... +. |+...+.+|||+...+.+ ....
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---ld---------~G~hvVsGtPGrv~dmikr~~L~t 167 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---LD---------YGQHVVSGTPGRVLDMIKRRSLRT 167 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---hc---------ccceEeeCCCchHHHHHHhccccc
Confidence 99999999999998888865 444444444433322111 11 333336677887666643 3445
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC---CCcc
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL 232 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~nl 232 (529)
+.+.++|+||||.+++.| |. .++-.+.+.+| +.|++++|||.+.++.+...+ .+.+|+.+-...+ ...+
T Consensus 168 r~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k--fmtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK--FMTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--hcCCceeEEEecCCCchhhh
Confidence 669999999999999887 33 55666667776 899999999999999885555 4456654432222 1112
Q ss_pred EEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 009675 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (529)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (529)
..-+...+..+.+++.|.++.....-..++|||||+..++.|.+.+++..+.+...||+|++++|.+++++|++|+-+||
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 22233333335577788888777666789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 313 VaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
++|+++++|||+|.|++|||||+|...+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+..
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887654
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-50 Score=397.31 Aligned_cols=343 Identities=22% Similarity=0.349 Sum_probs=279.7
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEe
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---------~~~~lVi 84 (529)
...|.+++|+..+++++.. +||..|+|+|..+||..+-|+|++.+|.||+|||.+|.+|+|.+ ..++||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 3478889999999999997 79999999999999999999999999999999999999999865 4579999
Q ss_pred CcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhh-HHHHHhh--hccC
Q 009675 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKI--HSRG 157 (529)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~-~~~l~~~--~~~~ 157 (529)
+|||+|+.|.+...+.+ .|.+....++.....+..... .. .+| +++|||+ +.+|... .+..
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~--PDI------VIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SR--PDI------VIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hC--CCE------EEecchhHHHHhccCCCcccc
Confidence 99999999877766653 467777777777666544332 33 334 6677774 3444332 3355
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC---CCccE
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLF 233 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~nl~ 233 (529)
.+.++|+||||+|++.| |+ .++..|.+.+| +.|.++||||++..+.. ...+.+..|+.+....+ .+.+.
T Consensus 327 siEVLvlDEADRMLeeg--Fa---demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FA---DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HH---HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 68899999999999988 66 55666667777 68999999999999877 55566777776543322 23343
Q ss_pred EE---EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 009675 234 YE---VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (529)
Q Consensus 234 ~~---v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (529)
.+ +++.- ..++-..+..++...-...+|||+.|++.|.++.-.|--.|+.++.+||.|++.+|.+.++.|++++++
T Consensus 400 QEFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 33 33221 122333445555555566799999999999999999988999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
|||||+++++|+||++|..||||.+|.+.+.|+||+||++|.|+.|.++.|...+|.+.++.+++..
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=385.63 Aligned_cols=333 Identities=22% Similarity=0.337 Sum_probs=276.6
Q ss_pred ChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CC--eEEEeCcHHH
Q 009675 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PG--IVLVVSPLIA 89 (529)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---------~~--~~lVi~P~~~ 89 (529)
+|++++.+++.+ +||..++|.|..+|+.+++++||+|.++||||||++|++|++.. .+ -+|||+|||+
T Consensus 12 ~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRE 90 (567)
T KOG0345|consen 12 PLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRE 90 (567)
T ss_pred CccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHH
Confidence 466999999998 79999999999999999999999999999999999999999852 22 5899999999
Q ss_pred HHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh----hccCCcc
Q 009675 90 LMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLN 160 (529)
Q Consensus 90 L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~----~~~~~l~ 160 (529)
|+.|+.+.+..+ .+.+..+.++.+.......+ .... ..| .++|||++..+... .+.+.+.
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~f---kee~--~nI------lVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTF---KEEG--PNI------LVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHH---HHhC--CcE------EEeCchhHHHHHhchhhhccccccc
Confidence 999999887764 44577777776655443332 2333 334 66777777777544 4456799
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC----CC---cc
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----RP---NL 232 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----r~---nl 232 (529)
++|+||||++.++| |. ..+..|.+.+| +...-+||||.+..+.. ....|+++|+.+..... .| .+
T Consensus 160 ~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~~ 232 (567)
T KOG0345|consen 160 ILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLAL 232 (567)
T ss_pred eEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhcc
Confidence 99999999999999 54 56777788888 46678999999999877 66678888886543222 22 23
Q ss_pred EEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 009675 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (529)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (529)
+|.+... ..++..+.++|......++|||.+|...++.....|... +..+..+||.|++..|..+++.|.+..-.
T Consensus 233 ~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~ 309 (567)
T KOG0345|consen 233 EYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG 309 (567)
T ss_pred eeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc
Confidence 3433333 478899999999988899999999999999999998875 67899999999999999999999998888
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHH
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
||+||++++||||+|+|++||+||+|.++..|+||+||+||.|+.|.+++|..+.+..++.++--
T Consensus 310 vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 310 VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988888777643
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-48 Score=374.14 Aligned_cols=358 Identities=19% Similarity=0.225 Sum_probs=273.0
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEe
Q 009675 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (529)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi 84 (529)
......|..+++++.+.+.|+. +|+.+++|+|..||+.+|.|+|++.+|.||||||.+|.+|++.+ +--++|+
T Consensus 3 ~~t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvl 81 (442)
T KOG0340|consen 3 RKTAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVL 81 (442)
T ss_pred ccccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEe
Confidence 3456788999999999999998 79999999999999999999999999999999999999999986 5569999
Q ss_pred CcHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCcc
Q 009675 85 SPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (529)
Q Consensus 85 ~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~ 160 (529)
+||++|+-|..+++..+| +++..+.++...-... ..... ...+++.||+.++-+..-+.=.-...+.++.
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa----~~L~~--rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA----AILSD--RPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh----hhccc--CCCeEecCccccccccccCCccchhhhhcee
Confidence 999999999999998854 5555555554332221 11222 2566666666554321110001122345689
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhCCCC-CEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC---ccEEEE
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP---NLFYEV 236 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~-~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~---nl~~~v 236 (529)
++|+|||+.+.+-. |- ..|..+.+..|.. +.++||||.+....+..........+..+......+ .+...+
T Consensus 156 flVlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 156 FLVLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred eEEecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhe
Confidence 99999999998855 33 5566677777754 899999999887654222111111122222211111 122222
Q ss_pred EecCchhhHHHHHHHHHH---hcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 009675 237 RYKDLLDDAYADLCSVLK---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~---~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (529)
...+ ...+-.++...|+ ..++..++||+++..+|+.|+..|+..++.+..+|+.|++++|...+.+|+++..+|||
T Consensus 231 I~~~-~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ili 309 (442)
T KOG0340|consen 231 ILVS-IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309 (442)
T ss_pred eecc-hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEE
Confidence 2111 1122234444444 33567899999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCC
Q 009675 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (529)
Q Consensus 314 aT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (529)
||+++++|+|+|.|..|||||+|.++..|+||+||++|+|+.|.++.++...|.+.+..+.+..+.+.
T Consensus 310 aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988877654
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.3e-48 Score=426.09 Aligned_cols=342 Identities=20% Similarity=0.215 Sum_probs=253.4
Q ss_pred CCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHH
Q 009675 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMEN 93 (529)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q 93 (529)
+..+++.+.+.|++ .|+++|+++|.++|+.+++|+|+++.+|||||||+||++|++.. +.++|||+||++|+.|
T Consensus 18 ~~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 18 PAWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD 96 (742)
T ss_pred CCcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH
Confidence 34578999999987 69999999999999999999999999999999999999999853 4689999999999999
Q ss_pred HHHHHHHc---CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009675 94 QVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (529)
Q Consensus 94 ~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~ 170 (529)
|...++++ ++.+..+.+......+..+ .. ..+++++||+++...............+.+++|||||||.+
T Consensus 97 ~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 97 QLRAVRELTLRGVRPATYDGDTPTEERRWA----RE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 99999986 4556666666655443222 21 25789999987642111111111122467999999999998
Q ss_pred cc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC--CCccEEEEE-ec------
Q 009675 171 SS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--RPNLFYEVR-YK------ 239 (529)
Q Consensus 171 ~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r~nl~~~v~-~~------ 239 (529)
.. +|.++...+..|..+...++ +.+++++|||.++... .....++ .+..+..... +....+.+. +.
T Consensus 170 ~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 170 RGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG--APVVAVTEDGSPRGARTVALWEPPLTELTG 246 (742)
T ss_pred cCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC--CCeEEECCCCCCcCceEEEEecCCcccccc
Confidence 65 23333344455555555554 5689999999988743 3333333 2333222111 111211111 10
Q ss_pred --------CchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHH
Q 009675 240 --------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDD 303 (529)
Q Consensus 240 --------~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~ 303 (529)
.....+...+.++++. +.++||||+|++.|+.++..|++. +..+..|||++++++|.+++++
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0112344455555554 468999999999999999998763 5678999999999999999999
Q ss_pred HhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEec--ccHHHHHHH
Q 009675 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM--DDRRRMEFI 373 (529)
Q Consensus 304 f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~--~d~~~~~~i 373 (529)
|++|++++||||+++++|||+|++++||++++|.+.++|+||+|||||.|+.|.++++... .|...+...
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999998863 344444433
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-48 Score=373.83 Aligned_cols=351 Identities=21% Similarity=0.325 Sum_probs=284.6
Q ss_pred CCCCCCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----
Q 009675 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----- 77 (529)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----- 77 (529)
|.|.|+-.++.. +...+++.+.+++ -||.+|+|+|.++++.+|+|+|++.+|.||+|||++|++|.+..
T Consensus 213 pIPnP~ctFddA-----Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp 286 (629)
T KOG0336|consen 213 PIPNPVCTFDDA-----FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQP 286 (629)
T ss_pred cCCCCcCcHHHH-----HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccc
Confidence 445555555444 6778999999998 59999999999999999999999999999999999999998753
Q ss_pred -------CCeEEEeCcHHHHHHHHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH
Q 009675 78 -------PGIVLVVSPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147 (529)
Q Consensus 78 -------~~~~lVi~P~~~L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~ 147 (529)
++.+||++||++|+.|.--...+ .|....++.++....+. .+++..+ ..+ +++||+.+
T Consensus 287 ~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---vei------iiatPgrl 354 (629)
T KOG0336|consen 287 KRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEI------IIATPGRL 354 (629)
T ss_pred hhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceE------EeeCCchH
Confidence 56799999999999987766665 46666666666554443 3445444 344 56677777
Q ss_pred HHHH--hhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEE-e
Q 009675 148 SKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-K 224 (529)
Q Consensus 148 ~~l~--~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~-~ 224 (529)
+.|. ...++..+.++|+||||.|+++| |.|.++++ +..-.|+.+.++.|||.++.|++....++ .+|.++ .
T Consensus 355 ndL~~~n~i~l~siTYlVlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~sY~--Kep~~v~v 428 (629)
T KOG0336|consen 355 NDLQMDNVINLASITYLVLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQSYL--KEPMIVYV 428 (629)
T ss_pred hhhhhcCeeeeeeeEEEEecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHHhh--hCceEEEe
Confidence 7763 45566779999999999999999 89988887 77888999999999999999998555544 455543 3
Q ss_pred ccCCCCc---cEEEEEecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHH
Q 009675 225 SSFNRPN---LFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300 (529)
Q Consensus 225 ~~~~r~n---l~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~ 300 (529)
.+.+... +...+ ......+++..+..+++.. ...++||||.++..++.|...|.-.|+.+..+||+-++.+|+..
T Consensus 429 GsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 429 GSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMA 507 (629)
T ss_pred cccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHH
Confidence 3333221 11111 2233346666666666653 56789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
++.|++|+++|||||+.+++|+|+|||.+|++||+|.+++.|+||+||+||.|+.|.++.|+...|......+++-..
T Consensus 508 l~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe 585 (629)
T KOG0336|consen 508 LEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILE 585 (629)
T ss_pred HHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887766543
No 29
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.1e-47 Score=378.63 Aligned_cols=343 Identities=21% Similarity=0.269 Sum_probs=274.7
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCe
Q 009675 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGI 80 (529)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----------~~~ 80 (529)
......++...+++..++++++ .||.+++++|+..|+.++.|+|+++.|.||+|||++|++|++.. +-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 4456677889999999999998 69999999999999999999999999999999999999999853 446
Q ss_pred EEEeCcHHHHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhh-
Q 009675 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH- 154 (529)
Q Consensus 81 ~lVi~P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~- 154 (529)
+|||+|||+|+.|....++++ ++.+..+.++....... +.+.. ..++ +++|||++.......
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~---~kl~k---~~ni------liATPGRLlDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEA---DKLVK---GCNI------LIATPGRLLDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHH---HHhhc---cccE------EEeCCchHHhHhhcCC
Confidence 999999999999999888873 44455554444332221 22222 2555 455566544332211
Q ss_pred --ccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC-
Q 009675 155 --SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP- 230 (529)
Q Consensus 155 --~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~- 230 (529)
-.+.+.++|+||||++++.| ||.++.++. ..+| ..+.++||||.+++|.+.....|.- +|..+.......
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii---~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQII---KILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGER 298 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHHHH---HhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCc
Confidence 13446789999999999999 886665554 4444 6889999999999998866666654 555544322211
Q ss_pred ------ccEEEEEecCchhhHHHHHHHHHHhcCC-ceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHH
Q 009675 231 ------NLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (529)
Q Consensus 231 ------nl~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 303 (529)
+-.|.+... ...+..+..+|+++.+ .++||||+|...+.-+++.|+...++|..+||++++..|..+...
T Consensus 299 ~The~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~ 375 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFE 375 (543)
T ss_pred chhhcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHH
Confidence 112333333 3457788888888755 899999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHH
Q 009675 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 304 f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
|.+.+.-|||||++++||+|+|+|++||.||+|.++++|+||+||+||.|+.|.++++..+.+...++.+.+
T Consensus 376 F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 376 FCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred HhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998888763
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-46 Score=375.60 Aligned_cols=350 Identities=22% Similarity=0.302 Sum_probs=270.0
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------C
Q 009675 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------P 78 (529)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------------~ 78 (529)
+-.+..|..+++++.+...|...++++.|+.+|+++|+.+++|+|++|.++||||||++|++|++.. +
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 3455678899999999999999999999999999999999999999999999999999999999853 6
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCc--cHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH-HHHH--hh
Q 009675 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLK--KI 153 (529)
Q Consensus 79 ~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~-~~l~--~~ 153 (529)
.-+|||+|||+|+.|.++.++++--+..++..+. +.+.+..-...++.| ++++++ |||++ ++|. +.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNILIg------TPGRLvDHLknT~~ 282 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INILIG------TPGRLVDHLKNTKS 282 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceEEEc------CchHHHHHHhccch
Confidence 7799999999999999999999644333332221 112222222334433 666555 55543 3332 23
Q ss_pred hccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-----------CCCEEEEeecCChhHHHHHHHHhccCCCeE
Q 009675 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (529)
Q Consensus 154 ~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-----------~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (529)
....++.++|+||||++.+.| |..++.+|-.+....+ ..+-+++|||++..|.+ ...+.+.+|+.
T Consensus 283 i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~ 358 (708)
T KOG0348|consen 283 IKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVY 358 (708)
T ss_pred heeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCcee
Confidence 445679999999999999999 7777777666653322 24579999999999877 66667777777
Q ss_pred Ee-----ccCC----------------------CC-cc--EEEEEecCchhhHHHHHHHHH----HhcCCceEEEEeCCc
Q 009675 223 LK-----SSFN----------------------RP-NL--FYEVRYKDLLDDAYADLCSVL----KANGDTCAIVYCLER 268 (529)
Q Consensus 223 ~~-----~~~~----------------------r~-nl--~~~v~~~~~~~~~~~~l~~~l----~~~~~~~~IIf~~s~ 268 (529)
+. ...+ .| ++ +|.|++. +-++..|..+| +....+++|||..+.
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp---KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~ 435 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP---KLRLVALAALLLNKVKFEEKQKMIVFFSCS 435 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCC---chhHHHHHHHHHHHhhhhhhceeEEEEech
Confidence 65 1111 01 11 2222222 12333444444 445677999999999
Q ss_pred ccHHHHHHHHHhC----------------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC
Q 009675 269 TTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (529)
Q Consensus 269 ~~~e~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~ 326 (529)
+.++--+..|.+. +.++..+||+|++++|..++..|...+--||.||++++||+|+|+
T Consensus 436 d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~ 515 (708)
T KOG0348|consen 436 DSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPH 515 (708)
T ss_pred hHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCC
Confidence 9999888877641 245788999999999999999999988889999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHh
Q 009675 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
|++||.||.|.+.++|+||+||++|.|..|.+++|..+.+.+.+..+...
T Consensus 516 V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 516 VGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred cCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999987766544
No 31
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-46 Score=377.23 Aligned_cols=343 Identities=22% Similarity=0.315 Sum_probs=281.1
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEE
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVL 82 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----------~~~~l 82 (529)
...+|++++++....+.|++. +|..++.+|+++|+..|.|+|++..|.|||||||+|++|.|.. +--+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 345899999999999999995 9999999999999999999999999999999999999999864 44599
Q ss_pred EeCcHHHHHHHHHHHHHHcCC----ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh--hcc
Q 009675 83 VVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSR 156 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~--~~~ 156 (529)
||+|||+|+.|..+.|.+.|- .+..+.++.......... ...+|++|||..+ +.+|... .+.
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-------~~mNILVCTPGRL-----LQHmde~~~f~t 213 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-------SQMNILVCTPGRL-----LQHMDENPNFST 213 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-------hcCCeEEechHHH-----HHHhhhcCCCCC
Confidence 999999999999999999653 455555555443322211 1367766665533 3344332 334
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc----CCCC-
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRP- 230 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~- 230 (529)
..+.++|+||||+++++| |+ ..|..+.+.+| ..|.++||||.+..+.. +..|.+.+|..+... ...|
T Consensus 214 ~~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred CcceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChh
Confidence 568999999999999999 55 56777788888 67899999999999877 566777888765432 2222
Q ss_pred ccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCC
Q 009675 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSR 308 (529)
Q Consensus 231 nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (529)
++...+... ...+++..|..+++.+...++|||..|.+++..+++.+... |++...+||+|++..|..+.++|...+
T Consensus 287 ~L~Q~y~~v-~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 287 NLQQSYVIV-PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred hhhheEEEE-ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 333222222 22578999999999999999999999999999999999875 899999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHh
Q 009675 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 309 ~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
--||+||++++||+|.|.|++||.+|.|.++++|+||+||++|.+..|.++++..+++.+.+-..+++
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995554444433
No 32
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-46 Score=364.72 Aligned_cols=349 Identities=23% Similarity=0.329 Sum_probs=278.0
Q ss_pred CCCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------
Q 009675 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------- 77 (529)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-------- 77 (529)
.+....+....|++++|++.+++++.+ .||+.|+-+|..+|+-+|.|+|+++.|.||||||++|++|.++.
T Consensus 10 g~~~ee~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~ 88 (569)
T KOG0346|consen 10 GPQVEESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN 88 (569)
T ss_pred ccchhhhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc
Confidence 445566667899999999999999998 69999999999999999999999999999999999999999863
Q ss_pred ----CCeEEEeCcHHHHHHHHHHHHHHc------CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH
Q 009675 78 ----PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147 (529)
Q Consensus 78 ----~~~~lVi~P~~~L~~q~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~ 147 (529)
+..++|++||++|++|....+.++ .+.+.-+.+..+....... ..+. .++ +++||+.+
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~----L~d~--pdI------vV~TP~~l 156 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVA----LMDL--PDI------VVATPAKL 156 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHH----HccC--CCe------EEeChHHH
Confidence 667999999999999988887764 2344444444443333222 2222 334 55666654
Q ss_pred HHHHhh---hccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 148 SKLKKI---HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 148 ~~l~~~---~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
..+... .....+.++|+||||.+..+| |. ..+..+.+.+| ..|.++||||.+.++.. .+.|.+++|+++
T Consensus 157 l~~~~~~~~~~~~~l~~LVvDEADLllsfG--Ye---edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviL 229 (569)
T KOG0346|consen 157 LRHLAAGVLEYLDSLSFLVVDEADLLLSFG--YE---EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVIL 229 (569)
T ss_pred HHHHhhccchhhhheeeEEechhhhhhhcc--cH---HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEE
Confidence 444322 334568999999999999999 55 45556667777 56889999999999888 888889999987
Q ss_pred eccC----CCCccE-EEEEecCchhhHHHHHHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHH
Q 009675 224 KSSF----NRPNLF-YEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297 (529)
Q Consensus 224 ~~~~----~r~nl~-~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R 297 (529)
.-.- +..++. |.+... ..+++..+..+++- .-.++.|||+||.+.|.+|.-.|.+.|++...++|.|+...|
T Consensus 230 kl~e~el~~~dqL~Qy~v~cs--e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR 307 (569)
T KOG0346|consen 230 KLTEGELPNPDQLTQYQVKCS--EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSR 307 (569)
T ss_pred EeccccCCCcccceEEEEEec--cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccch
Confidence 6421 122332 233322 45777777666653 234578999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEeC-----------------------------------ccccccccCCccEEEEeCCCCCHHHH
Q 009675 298 SSVLDDWISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAF 342 (529)
Q Consensus 298 ~~~~~~f~~g~~~VLVaT~-----------------------------------a~~~GIDip~v~~VI~~~~p~s~~~y 342 (529)
.-++++|..|-+++||||+ -.+||||..+|..|||||+|.+..+|
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sY 387 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSY 387 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHH
Confidence 9999999999999999999 24589999999999999999999999
Q ss_pred HHHHcccCCCCCCceEEEEEecccHH---HHHHHHHh
Q 009675 343 YQESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSK 376 (529)
Q Consensus 343 ~Q~~GRagR~G~~g~~i~~~~~~d~~---~~~~i~~~ 376 (529)
+||+||++|.|++|.++.|+.+.+.. .++.++..
T Consensus 388 IHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 388 IHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred HHhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 99999999999999999999999877 44444443
No 33
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-47 Score=357.54 Aligned_cols=345 Identities=23% Similarity=0.303 Sum_probs=276.8
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (529)
...|+++.+.++++..+.+ .||+.|.|+|.++|+.++.|+|+++-|..|+|||.+|.+|.|.+ .-.++|++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 3468889999999999988 49999999999999999999999999999999999999999976 3358999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccE
Q 009675 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (529)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~ 161 (529)
|+|+.|....+.+ .|+.+....++.+... ++ .++--....+++|||+...|.+ ....+...+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrD------DI------~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRD------DI------MRLNQTVHLVVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCccccc------ce------eeecCceEEEEcCChhHHHHHhcccccchhceE
Confidence 9999987766665 4555555555544322 12 2222222336777887766643 445667889
Q ss_pred EEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe--ccCCCCc--cEEEE
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPN--LFYEV 236 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~n--l~~~v 236 (529)
+|+||||.+++. +|.+.. ..+...+| +.|++++|||.+-.|...+.+.+. +|..+. ....... -+|.+
T Consensus 231 lV~DEADKlLs~--~F~~~~---e~li~~lP~~rQillySATFP~tVk~Fm~~~l~--kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 231 LVMDEADKLLSV--DFQPIV---EKLISFLPKERQILLYSATFPLTVKGFMDRHLK--KPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred EEechhhhhhch--hhhhHH---HHHHHhCCccceeeEEecccchhHHHHHHHhcc--Ccceeehhhhhhhcchhhheee
Confidence 999999999874 476654 44556666 688999999999999887777664 444332 2222222 23333
Q ss_pred EecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
+.. ..++.-|..++.+..-...||||||.+.+|-+|+.+.+.|++|.++|+.|-++.|..+...|++|.++.||||+
T Consensus 304 V~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 304 VEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred ech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 322 24555555556555556789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCC
Q 009675 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (529)
Q Consensus 317 a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (529)
.+.||||++.|++||+||+|++.|+|+||+||+||.|..|.++.+.+.+|...+..++++.+...
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999998877654
No 34
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=370.87 Aligned_cols=343 Identities=20% Similarity=0.304 Sum_probs=267.7
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------------CC
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----------------~~ 79 (529)
.|..-.+.+.+...++. -|++.|+|+|+.+|+.+..|+|++++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 44455677777777777 59999999999999999999999999999999999999999852 37
Q ss_pred eEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--h
Q 009675 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (529)
Q Consensus 80 ~~lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~ 153 (529)
.++|++||++|+.|.+++.+++ +........+...... ...+. ..+++ .++|||.+..+.+ .
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q---~~~~~---~gcdI------lvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ---LRFIK---RGCDI------LVATPGRLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh---hhhhc---cCccE------EEecCchhhhhhhcce
Confidence 8999999999999999999984 3444444444222211 11222 23566 4555666666543 3
Q ss_pred hccCCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHhccCCC--eEEeccCC
Q 009675 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFN 228 (529)
Q Consensus 154 ~~~~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~ 228 (529)
..+..+.++|+||||.|.+ .| |.|.++.+..-.... .+.+.++||||.+......+...+.-... .+-+.+..
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 3355678999999999998 77 777776664433332 26789999999999988855544432211 12234567
Q ss_pred CCccEEEEEecCchhhHHHHHHHHHHhcC----Cc-----eEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHH
Q 009675 229 RPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (529)
Q Consensus 229 r~nl~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (529)
..|+...+...... ++...|++++.... .+ .++|||.|++.|..++..|...++++..+||..++.+|.+
T Consensus 300 ~~ni~q~i~~V~~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 300 SENITQKILFVNEM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cccceeEeeeecch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 78888777776543 45566666665432 23 7999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHH
Q 009675 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (529)
Q Consensus 300 ~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~ 374 (529)
.++.|++|+.+|||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|..|.++.|++..+....+.+.
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999966655444443
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-45 Score=368.72 Aligned_cols=349 Identities=21% Similarity=0.290 Sum_probs=265.8
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC------------------
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK------------------ 77 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~------------------ 77 (529)
|..+.++.+++++|.+ .||+.|+++|...++++..| .|++..|.|||||||+|-+|++.+
T Consensus 183 W~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 183 WKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 5567999999999998 79999999999999999999 799999999999999999999972
Q ss_pred -CCeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh
Q 009675 78 -PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (529)
Q Consensus 78 -~~~~lVi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~ 152 (529)
...+||++|||+|+.|..+.+.. -++.+..+.++.....+..+... .|.+ +|+|||++..+..
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~I--------VVATPGRlweli~ 329 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDI--------VVATPGRLWELIE 329 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCE--------EEecchHHHHHHH
Confidence 33599999999999999999887 36788888888777766555442 3333 7788887766632
Q ss_pred -----hhccCCccEEEEecccccccCCCCCHHHHHHHHHHH--HhCCCCCEEEEeecCChhH------------------
Q 009675 153 -----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATAAPKV------------------ 207 (529)
Q Consensus 153 -----~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~--~~~~~~~ii~lSAT~~~~~------------------ 207 (529)
+.+...+.++|+||||+|.+.|| |...-..|..+. ...+..|.+.||||.+-..
T Consensus 330 e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~ 408 (731)
T KOG0347|consen 330 EDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELN 408 (731)
T ss_pred hhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhh
Confidence 33456689999999999999998 543333333332 1223678999999976432
Q ss_pred --HHHHHHHhccCC-CeEEeccCCCCcc---EEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC
Q 009675 208 --QKDVMESLCLQN-PLVLKSSFNRPNL---FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281 (529)
Q Consensus 208 --~~~i~~~l~~~~-~~~~~~~~~r~nl---~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (529)
.+.+++.+++.. |.++......... .-.....+ ..++--.|.-+|..+ ++++|||||+++.+.+|+-.|...
T Consensus 409 ~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~-~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 409 AKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECP-PLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred HHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCC-ccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhc
Confidence 233344445443 3443322111000 00000000 000001111122233 457999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
+++...+|+.|.++.|.+.+++|++..--|||||++++||+|||+|.+||||.+|.+.+.|+||+||++|++..|..+++
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml 566 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVML 566 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccHHHHHHHHHhcccCC
Q 009675 362 YGMDDRRRMEFILSKNQSKN 381 (529)
Q Consensus 362 ~~~~d~~~~~~i~~~~~~~~ 381 (529)
+.+.+...+..+-+....+.
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred eChHHhHHHHHHHHHHhhcc
Confidence 99999888887766555443
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-43 Score=341.39 Aligned_cols=352 Identities=19% Similarity=0.254 Sum_probs=284.2
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------C
Q 009675 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------P 78 (529)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~ 78 (529)
|=..+.+..+|+.+.|.|++++.+-. +||..|+.+|..+++-++.. ++++.++..|+|||.||.|.+|.+ .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~ 160 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV 160 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC
Confidence 44567788999999999999999998 79999999999999999986 799999999999999999999976 6
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHcCCce----eEeccCccHHHHHHHHHHhhcCCC-cccEEEeCcccccChhhHHHH---
Q 009675 79 GIVLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKL--- 150 (529)
Q Consensus 79 ~~~lVi~P~~~L~~q~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~tpe~v~t~~~~~~l--- 150 (529)
+..+.|+|+++|+.|..+.+.+.|-.. .+.-.+. ....|.+ .-+| +++|||-...+
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s----------k~~rG~~i~eqI------viGTPGtv~Dlm~k 224 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS----------KAKRGNKLTEQI------VIGTPGTVLDLMLK 224 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCc----------ccccCCcchhhe------eeCCCccHHHHHHH
Confidence 778999999999999999999987544 2211111 0111110 1233 45666644343
Q ss_pred HhhhccCCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cC
Q 009675 151 KKIHSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SF 227 (529)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~ 227 (529)
.+......+..+|+|||+.+.+ .| |+ ..-..+....| +.+++++|||....+.....+.+.-.++..++. ..
T Consensus 225 lk~id~~kikvfVlDEAD~Mi~tqG--~~---D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel 299 (477)
T KOG0332|consen 225 LKCIDLEKIKVFVLDEADVMIDTQG--FQ---DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL 299 (477)
T ss_pred HHhhChhhceEEEecchhhhhhccc--cc---ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc
Confidence 2345566789999999999976 44 32 22233555566 899999999999999998888776666666654 45
Q ss_pred CCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 009675 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (529)
Q Consensus 228 ~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (529)
...++..-.......+++++.|.++.....-++.||||.|++.+..|+..|.+.|..+..+||.|.-++|..+.+.|+.|
T Consensus 300 ~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g 379 (477)
T KOG0332|consen 300 ALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG 379 (477)
T ss_pred cccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC
Confidence 56666655565666678999999987766667899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCCC------CHHHHHHHHcccCCCCCCceEEEEEecc-cHHHHHHHHHhcccC
Q 009675 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSK 380 (529)
Q Consensus 308 ~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------s~~~y~Q~~GRagR~G~~g~~i~~~~~~-d~~~~~~i~~~~~~~ 380 (529)
.-+|||+|++++||||++.|+.||+||+|- +.++|+||+||+||.|+.|.++-++... +...+..|.+....+
T Consensus 380 ~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 380 KEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred cceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999995 8899999999999999999999887765 456666666655443
No 37
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=350.49 Aligned_cols=331 Identities=21% Similarity=0.361 Sum_probs=260.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc--------------CCCe
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KPGI 80 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~--------------~~~~ 80 (529)
..|.++.....+++.|++. |+.+|+|+|.+.++.+++|+|++..|-||||||++|.+|.+. .++.
T Consensus 170 ksF~eMKFP~~~L~~lk~K-GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKK-GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhccCCHHHHHHHHhc-CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 4455667789999999985 999999999999999999999999999999999999999763 2788
Q ss_pred EEEeCcHHHHHHHHHHHHHHc-------CC---ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH
Q 009675 81 VLVVSPLIALMENQVIGLKEK-------GI---AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150 (529)
Q Consensus 81 ~lVi~P~~~L~~q~~~~l~~~-------gi---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l 150 (529)
.|||+|+|+|+.|..+-+..+ |. .+....++....+.-. .++.| ..+ +++|||++..+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~---~v~~G---vHi------vVATPGRL~Dm 316 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD---VVRRG---VHI------VVATPGRLMDM 316 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH---HHhcC---eeE------EEcCcchHHHH
Confidence 999999999999877665542 32 2333334444443322 22222 444 66777877666
Q ss_pred H--hhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-
Q 009675 151 K--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS- 226 (529)
Q Consensus 151 ~--~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~- 226 (529)
. +..++.-..++++||||++.+.| |..+.+.+ ...|. ..|.++||||.+...+.. ..-.+-.|+++..+
T Consensus 317 L~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~i---F~~FK~QRQTLLFSATMP~KIQ~F--AkSALVKPvtvNVGR 389 (610)
T KOG0341|consen 317 LAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTI---FSFFKGQRQTLLFSATMPKKIQNF--AKSALVKPVTVNVGR 389 (610)
T ss_pred HHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHH---HHHHhhhhheeeeeccccHHHHHH--HHhhcccceEEeccc
Confidence 4 34444557789999999999999 66555444 34443 688999999999987663 33344566665432
Q ss_pred --CCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 009675 227 --FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (529)
Q Consensus 227 --~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (529)
...-|+..++.+... +.++..|++-|.+.. .+++|||..+.+++.+.++|--.|+.++.+|||-++++|....+.|
T Consensus 390 AGAAsldViQevEyVkq-EaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 390 AGAASLDVIQEVEYVKQ-EAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred ccccchhHHHHHHHHHh-hhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHH
Confidence 223344444444322 456777888777654 4799999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 305 ~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
+.|+.+|||||++++.|+|.|++.+|||||+|..+++|+||+||+||.|+.|.+.+|.+....
T Consensus 468 r~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 468 RAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred hcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999987643
No 38
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.8e-42 Score=401.92 Aligned_cols=333 Identities=15% Similarity=0.203 Sum_probs=261.2
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
-.++.+.+++.+|| +|++.|+++++.+++|+|++++||||+|||++++++++.. +.++|||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 45667778888999 5999999999999999999999999999999888777643 6689999999999999999999
Q ss_pred Hc------CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC
Q 009675 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 100 ~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~ 173 (529)
.+ ++.+..++++.....+......+..+. .+++++||+.+.. .+.... ...+++|||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~-----~~~~l~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLAR-----NFPEMK-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHH-----hHHHHh-hCCCCEEEEECceecccc
Confidence 84 456677888888887777777776654 7799888885532 111122 256999999999999999
Q ss_pred CC---------CCHHHHHH----H-------------------HHHHHhCCCCC--EEEEeecCChhHHHHHHHHhccCC
Q 009675 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (529)
Q Consensus 174 g~---------~fr~~y~~----l-------------------~~l~~~~~~~~--ii~lSAT~~~~~~~~i~~~l~~~~ 219 (529)
|| +|++++.. + ......+|+.+ .+.+|||.++. .++...+ ..
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 98 89999864 1 11122345443 46688888864 2333333 34
Q ss_pred CeEEeccCCCCccEE---EEEecCchhhHHHHHHHHHHhcCCceEEEEeCCccc---HHHHHHHHHhCCCceEEecCCCC
Q 009675 220 PLVLKSSFNRPNLFY---EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 220 ~~~~~~~~~r~nl~~---~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
+..+..+..++++.. .+...+. .. ...+.++++.. +..+||||+|++. |+.+++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~-~~-k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEK-II-KEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCH-HH-HHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 555555665655433 2222221 22 24677777766 4579999999886 489999999999999999995
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeC----ccccccccCC-ccEEEEeCCCC---CHHHHHHHH-------------cccCCC
Q 009675 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (529)
Q Consensus 294 ~~~R~~~~~~f~~g~~~VLVaT~----a~~~GIDip~-v~~VI~~~~p~---s~~~y~Q~~-------------GRagR~ 352 (529)
|...+++|++|+++|||||+ +++||||+|+ ||+|||||+|+ +++.|+|.. ||+||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 7889999999 99999999999 999999988 999999
Q ss_pred CCCceEEEEEecccHHHHHHHHHh
Q 009675 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 353 G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
|.++.+++.+..++...++.++++
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999988888888888877765
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.3e-41 Score=377.42 Aligned_cols=320 Identities=21% Similarity=0.212 Sum_probs=252.3
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIAL 90 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L 90 (529)
+.....+...+.+.|||+ ++|.|.++|+.++++ +|.+++||||+|||.+|++|++. .+.+++|++||++|
T Consensus 434 ~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~L 512 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLL 512 (926)
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHH
Confidence 455667788888889996 999999999999975 79999999999999999988764 47899999999999
Q ss_pred HHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEec
Q 009675 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (529)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (529)
+.|+++.+++ +++.+..+++..+..+.......+..+. .+++++||..+ .+....++++++||||
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll---------~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLL---------QKDVKFKDLGLLIIDE 581 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHh---------hCCCCcccCCEEEeec
Confidence 9999999887 3567777888777777777777777765 67888777433 2233456789999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-CCCCccEEEEEecCchhhH
Q 009675 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDDA 245 (529)
Q Consensus 167 aH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~~~~ 245 (529)
+|++ |... ...+....+++++++||||+.+.... ....+..++.++... ..+..+...+..... ...
T Consensus 582 ahrf---gv~~------~~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i 649 (926)
T TIGR00580 582 EQRF---GVKQ------KEKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELV 649 (926)
T ss_pred cccc---chhH------HHHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEEecCH-HHH
Confidence 9994 4322 22344445688999999999988765 334455566555543 334444433332221 112
Q ss_pred HHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccc
Q 009675 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (529)
Q Consensus 246 ~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GID 323 (529)
...+...+. .+++++|||++++.++.+++.|++. ++++..+||+|++++|.+++++|.+|+++|||||+++++|||
T Consensus 650 ~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GID 727 (926)
T TIGR00580 650 REAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGID 727 (926)
T ss_pred HHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccc
Confidence 233333333 3567999999999999999999984 789999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 324 RKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 324 ip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
+|++++||+++.|. +..+|+|++||+||.|+.|.|++++...
T Consensus 728 Ip~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 728 IPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999875 7889999999999999999999998653
No 40
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=339.06 Aligned_cols=348 Identities=20% Similarity=0.285 Sum_probs=289.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEE
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLV 83 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lV 83 (529)
..|+..+.+..+..+.+.. -|.+++|+|.++++..+.|+||+-+|.||||||.+|++|++.+ ++..||
T Consensus 223 tsfeh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vi 301 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVI 301 (731)
T ss_pred chhhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEE
Confidence 3456678889999999874 8999999999999999999999999999999999999999853 788999
Q ss_pred eCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccC
Q 009675 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~ 157 (529)
++||++|+.|+...++++ |+..+.++++.+..++..- +..+ ..+ +|+||+++-.+. +..++.
T Consensus 302 lvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---Lk~g---~Ei------vVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---LKEG---AEI------VVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---hhcC---CeE------EEechHHHHHHHHhhcccce
Confidence 999999999999888775 7888888888877665432 2222 233 566777766664 345667
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEe-ccC--CCCccEE
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSF--NRPNLFY 234 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~--~r~nl~~ 234 (529)
+++++|+|||++|.+.| |.+..+.|.. .-.|+.|.++||||....+.+.....|. .|+.+. .+. ....+..
T Consensus 370 rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vgean~dITQ 443 (731)
T KOG0339|consen 370 RVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGEANEDITQ 443 (731)
T ss_pred eeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhccccchhh
Confidence 79999999999999999 7776666543 2346899999999999998887666664 444332 232 2344566
Q ss_pred EEEecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 009675 235 EVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (529)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (529)
.|........++.+|+..|-.. ..+++|||+.-+..+++++..|...|+++..+||++.+.+|.+++.+|+++..+|+|
T Consensus 444 ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlv 523 (731)
T KOG0339|consen 444 TVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLV 523 (731)
T ss_pred eeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEE
Confidence 6666666678888887777554 446899999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCC
Q 009675 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (529)
Q Consensus 314 aT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~ 381 (529)
||+++++|+|+|+++.||+||+-.+++.|.||+||+||.|..|.++.|++..|......+++......
T Consensus 524 atDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag 591 (731)
T KOG0339|consen 524 ATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG 591 (731)
T ss_pred EeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999998888887765443
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-41 Score=382.94 Aligned_cols=325 Identities=22% Similarity=0.264 Sum_probs=233.0
Q ss_pred ChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEEeCcHH
Q 009675 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLI 88 (529)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------------~~~~lVi~P~~ 88 (529)
.+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||||||++|.+|++.. +..+|||+|++
T Consensus 17 ~l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 356778888776 6778999999999999999999999999999999999998732 34699999999
Q ss_pred HHHHHHHHHHHH---------------c-CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh
Q 009675 89 ALMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (529)
Q Consensus 89 ~L~~q~~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~ 152 (529)
+|+.|+.+.+.. . ++.+...++......+..... ...+++++|||.+..--....+
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~------~~p~IlVtTPE~L~~ll~~~~~-- 166 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK------KPPHILITTPESLAILLNSPKF-- 166 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh------CCCCEEEecHHHHHHHhcChhH--
Confidence 999999876542 1 445666777766655543322 1367888888865310000001
Q ss_pred hhccCCccEEEEecccccccC--CCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhcc------CCCeEE
Q 009675 153 IHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNPLVL 223 (529)
Q Consensus 153 ~~~~~~l~~iViDEaH~~~~~--g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~------~~~~~~ 223 (529)
....+.+++|||||+|.+.+. |..+...+.+ +.... ++.+++++|||.++. ..+..++.. ..+..+
T Consensus 167 ~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r---L~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~i 241 (876)
T PRK13767 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLER---LEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEI 241 (876)
T ss_pred HHHHhcCCEEEEechhhhccCccHHHHHHHHHH---HHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEE
Confidence 012456899999999999753 3333333333 33333 467899999999863 344555543 222222
Q ss_pred e-ccCCCCccEEEEEec----------CchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC------CCceE
Q 009675 224 K-SSFNRPNLFYEVRYK----------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GISCA 286 (529)
Q Consensus 224 ~-~~~~r~nl~~~v~~~----------~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------g~~~~ 286 (529)
. ..+.+ .+...+... ......+..+.+.++. +.++||||+|++.|+.++..|++. +..+.
T Consensus 242 v~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~ 318 (876)
T PRK13767 242 VDARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIG 318 (876)
T ss_pred EccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhcccccee
Confidence 2 22222 121111110 0111233444444443 457999999999999999999873 46799
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-CCCceEEEEEe
Q 009675 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~g~~i~~~~ 363 (529)
.+||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+++.|.+...|+||+||+||. |..+.+.++..
T Consensus 319 ~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 319 AHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 44555555544
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-41 Score=378.28 Aligned_cols=329 Identities=22% Similarity=0.306 Sum_probs=243.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHH
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~ 91 (529)
.++++++++.+.+.+++ .|+.+|+|+|.++++. +++|+|++++||||+|||++|.+|++. .++++|||+|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 35678899999999998 6999999999999998 778999999999999999999999775 478999999999999
Q ss_pred HHHHHHHHHc---CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEec
Q 009675 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (529)
Q Consensus 92 ~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDE 166 (529)
.|+++.++.+ |+.+..+.+....... .+ ...+++++|||.+. .+.+ ....+.++++||||
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~~------~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKVD------SLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHHH------HHHhcChhhhhhcCEEEEEC
Confidence 9999999886 7777666654432211 01 12567777777542 2221 11235689999999
Q ss_pred ccccccCCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCC------CeEEecc-CCCCccEEEE--
Q 009675 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSS-FNRPNLFYEV-- 236 (529)
Q Consensus 167 aH~~~~~g~~fr~~y~~-l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~------~~~~~~~-~~r~nl~~~v-- 236 (529)
+|.+.+.+ +.+.+.. +..++...++.++++||||.++. .++..+++... |+.+... .....+.+..
T Consensus 146 ~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 146 VHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred ccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccc
Confidence 99998744 5555554 34555556789999999999763 56677775421 1111000 0000000000
Q ss_pred --EecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC--------------------------------
Q 009675 237 --RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-------------------------------- 282 (529)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-------------------------------- 282 (529)
.........+..+.+.++ .++++||||+|++.|+.+++.|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 299 (737)
T PRK02362 222 REVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLA 299 (737)
T ss_pred ccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHH
Confidence 000001223334444443 45689999999999999998886431
Q ss_pred ----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----eC-----CCCCHHHHHHHHccc
Q 009675 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRA 349 (529)
Q Consensus 283 ----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----~~-----~p~s~~~y~Q~~GRa 349 (529)
.+++++||||++++|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+|||
T Consensus 300 ~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 300 DCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred HHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 36889999999999999999999999999999999999999999999997 66 688999999999999
Q ss_pred CCCCCC--ceEEEEEeccc
Q 009675 350 GRDQLP--SKSLLYYGMDD 366 (529)
Q Consensus 350 gR~G~~--g~~i~~~~~~d 366 (529)
||.|.. |.++++....+
T Consensus 380 GR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCCCceEEEEecCch
Confidence 999865 88899887653
No 43
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-41 Score=365.97 Aligned_cols=350 Identities=22% Similarity=0.365 Sum_probs=283.2
Q ss_pred CCCCCCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----
Q 009675 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----- 77 (529)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----- 77 (529)
..|.|+.++... +++..++..+++ +||..++|+|.+|||++++|+|||.+|.||||||++|.||++.+
T Consensus 359 ~~pkpv~sW~q~------gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 359 ECPKPVTSWTQC------GLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred CCCcccchHhhC------CchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 356666665554 889999999965 89999999999999999999999999999999999999999853
Q ss_pred ------CCeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH
Q 009675 78 ------PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147 (529)
Q Consensus 78 ------~~~~lVi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~ 147 (529)
++..||++||++|+.|+.+.++. +++.++...++....... ..++.+ ..+ +|+|||++
T Consensus 432 ~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi---aelkRg---~eI------vV~tpGRm 499 (997)
T KOG0334|consen 432 PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI---AELKRG---AEI------VVCTPGRM 499 (997)
T ss_pred ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH---HHHhcC---Cce------EEeccchh
Confidence 78999999999999999988776 477777777666665543 334444 344 45555543
Q ss_pred HHHH-----hhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeE
Q 009675 148 SKLK-----KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 222 (529)
Q Consensus 148 ~~l~-----~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (529)
-.+. +..++.++.++|+||||++.+.| |.|....| +.+.-|..|.+.+|||.+..+...-...+. .|+.
T Consensus 500 iD~l~~n~grvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pve 573 (997)
T KOG0334|consen 500 IDILCANSGRVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVE 573 (997)
T ss_pred hhhHhhcCCccccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCee
Confidence 3331 22334456699999999999888 77766553 444456899999999999997665556665 4443
Q ss_pred Eec---cCCCCccEEEEEecCchhhHHHHHHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHH
Q 009675 223 LKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (529)
Q Consensus 223 ~~~---~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~ 298 (529)
+.. +....++...+.......+++..|.++|.. ....++||||.+...|..+.+.|.+.|+.|..+||+.++.+|.
T Consensus 574 iiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~ 653 (997)
T KOG0334|consen 574 IIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRS 653 (997)
T ss_pred EEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHH
Confidence 322 222344555555555457788888888875 3477899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
.+++.|++|.+.+||||+++++|+|++++..||||++|...+.|+||.||+||.|+.|.|++|..+.+.+....|.+..
T Consensus 654 sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 654 STIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred hHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998777766666655
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.6e-40 Score=364.13 Aligned_cols=316 Identities=21% Similarity=0.263 Sum_probs=246.4
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q 93 (529)
...+.+.+...++|. |++.|+++++.+.++ .+++++||||||||++|++|++. .+..++|++||++|+.|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 456777777789995 999999999999876 47999999999999999998864 47799999999999999
Q ss_pred HHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009675 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (529)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (529)
+++.++++ |+++..+.++.....+......+..+. .+++++||..+.. ......++++||||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~---------~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQD---------DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhcc---------cchhcccceEEEechhh
Confidence 99998873 688899999999888888888888776 7777777754422 22345789999999998
Q ss_pred cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCCccEEEEEecCchhhHHHH
Q 009675 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (529)
Q Consensus 170 ~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~ 248 (529)
+ |...|. .+.......++++||||+.+.... ....+......+.. ...+..+...+.........+..
T Consensus 395 f---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 F---GVEQRL------ALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred h---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 5 332332 233444468899999999887654 22233333333332 23344455444444333333444
Q ss_pred HHHHHHhcCCceEEEEeCCcc--------cHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 249 l~~~l~~~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
+.+.+. .+.+++|||++.+ .++.+++.|.+. ++.+..+||+|++++|.+++++|++|+++|||||+++
T Consensus 464 i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 444442 4568999999654 456778888765 5789999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEe
Q 009675 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999997 68889999999999999999999995
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.7e-39 Score=356.45 Aligned_cols=314 Identities=20% Similarity=0.251 Sum_probs=236.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQ 94 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~ 94 (529)
......+.+.++| +|++.|+++++.++++ .+.+++||||||||++|++|++. .+..++|++||++|+.|+
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQH 300 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHH
Confidence 3455555556899 5999999999999876 25899999999999999988765 477999999999999999
Q ss_pred HHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 009675 95 VIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (529)
Q Consensus 95 ~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~ 170 (529)
.+.++++ |+++..+.++.....+......+..+. .+++++||..+. ......+++++||||+|++
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~---------~~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQ---------EKVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHh---------ccccccccceEEEechhhc
Confidence 9988873 688999999988888888888887775 678777776442 2233467899999999984
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCCccEEEEEecCchhhHH
Q 009675 171 SSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAY 246 (529)
Q Consensus 171 ~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~ 246 (529)
|...|. .+....+ ..++++||||+.+..... ...+......+.. ...+..+...+.........+
T Consensus 370 ---g~~qr~------~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~ 438 (630)
T TIGR00643 370 ---GVEQRK------KLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVY 438 (630)
T ss_pred ---cHHHHH------HHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHHHHH
Confidence 433332 2333333 678999999998865442 2222112222221 222333444333332222223
Q ss_pred HHHHHHHHhcCCceEEEEeCCcc--------cHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 247 ADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 247 ~~l~~~l~~~~~~~~IIf~~s~~--------~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
..+.+.+. .+.+++|||++.+ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+
T Consensus 439 ~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 439 EFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 33333332 3567999998764 466777778763 78899999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEE
Q 009675 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (529)
Q Consensus 317 a~~~GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~ 362 (529)
++++|||+|++++||+++.|. +...|.|++||+||.|+.|.|++++
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999987 7889999999999999999999999
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.3e-39 Score=369.80 Aligned_cols=319 Identities=21% Similarity=0.206 Sum_probs=246.3
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEeCcHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~~L 90 (529)
+..+..+...+...|+| ++++.|.++|+.++.+ +|+++++|||+|||.+|+.+++ ..+..++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 44556677777778999 5999999999999987 8999999999999999887764 358899999999999
Q ss_pred HHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEec
Q 009675 91 MENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (529)
Q Consensus 91 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDE 166 (529)
+.|+++.+++. ++.+..+++..+..++...+..+..+. .+++++||+.+. .....+.++++||||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~---------~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQ---------SDVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHh---------CCCCHhhCCEEEEec
Confidence 99999998863 466777888888888777777776654 678888886432 122345689999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC-CCccEEEEEecCchhhH
Q 009675 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDDA 245 (529)
Q Consensus 167 aH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~~~~~ 245 (529)
+|++ |.. ....++...+++++++||||+.+.+.... ..++.++.++..... +..+...+...... ..
T Consensus 731 ahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~ 798 (1147)
T PRK10689 731 EHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLSIIATPPARRLAVKTFVREYDSL-VV 798 (1147)
T ss_pred hhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcEEEecCCCCCCCceEEEEecCcH-HH
Confidence 9995 432 22334444568999999999999876633 345566666654332 33333322222211 12
Q ss_pred HHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccc
Q 009675 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (529)
Q Consensus 246 ~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GID 323 (529)
...+...+. .+++++|||++++.++.+++.|.+. +..+..+||+|++++|.+++.+|++|+++|||||+++++|||
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 223333333 2457999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCC-CCHHHHHHHHcccCCCCCCceEEEEEec
Q 009675 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (529)
Q Consensus 324 ip~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~~g~~i~~~~~ 364 (529)
+|+|++||..+.+ .++.+|+|++||+||.|+.|.|++++..
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999954432 2567899999999999999999999854
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=352.13 Aligned_cols=324 Identities=25% Similarity=0.311 Sum_probs=262.2
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEEeCcHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lVi~P~~ 88 (529)
..+++.+.+.+++. |.+|||.|.++|+.+.+|++++++||||||||+++.+|++.. +-.+|+|+|++
T Consensus 6 ~~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 6 NILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred hhcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 35688899999985 889999999999999999999999999999999999998753 13599999999
Q ss_pred HHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccc----cChhhHHHHHhhhccCCcc
Q 009675 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLN 160 (529)
Q Consensus 89 ~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v----~t~~~~~~l~~~~~~~~l~ 160 (529)
+|..|+...|.. +|++....++.++..++.... ....+|+++|||.+ ..+.+... ++.+.
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~------~~PPdILiTTPEsL~lll~~~~~r~~------l~~vr 151 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML------KNPPHILITTPESLAILLNSPKFREL------LRDVR 151 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc------CCCCcEEEeChhHHHHHhcCHHHHHH------hcCCc
Confidence 999999988776 789998888888887765432 24588999999943 23333222 24688
Q ss_pred EEEEecccccc--cCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCC-CeEEeccCCCCccEEEEE
Q 009675 161 LVAIDEAHCIS--SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVR 237 (529)
Q Consensus 161 ~iViDEaH~~~--~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~r~nl~~~v~ 237 (529)
++||||.|.+. +.|+..- ..|.++....++.+.|+||||..+. .++.++|.... +..+.......+..+.+.
T Consensus 152 ~VIVDEiHel~~sKRG~~Ls---l~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~ 226 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLA---LSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVI 226 (814)
T ss_pred EEEeehhhhhhccccchhhh---hhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEE
Confidence 99999999995 4665432 4566666666688999999999865 56788888765 444444333334444333
Q ss_pred ecC--------chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC-CceEEecCCCCHHHHHHHHHHHhcCC
Q 009675 238 YKD--------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSR 308 (529)
Q Consensus 238 ~~~--------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (529)
... .....+..+.++++++. .+|||+|||..+|.++..|++.+ ..+..+||+++.+.|..+.++|++|+
T Consensus 227 ~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~ 304 (814)
T COG1201 227 SPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE 304 (814)
T ss_pred ecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC
Confidence 321 12346777888888765 79999999999999999999986 89999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-CCCceEEEEEec
Q 009675 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYGM 364 (529)
Q Consensus 309 ~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~g~~i~~~~~ 364 (529)
.+++|||+.++.|||+.+|+.|||++.|+++..++||+||+|+. |..+.++++...
T Consensus 305 lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 305 LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999999999999999974 666888877665
No 48
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=332.08 Aligned_cols=339 Identities=22% Similarity=0.309 Sum_probs=244.8
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEeCcHHHH
Q 009675 27 VKLLRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIAL 90 (529)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~---------g~dvlv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P~~~L 90 (529)
...+.. .++++..|.|..+++.++. ++|++|.||||||||+||.+|+++. .-++|||+|+++|
T Consensus 149 ~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 149 DQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 334666 5999999999999999862 5899999999999999999999863 3579999999999
Q ss_pred HHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCC--cccEEEeCcccccChhhHH-HHH--hhhccCCccE
Q 009675 91 MENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKP--SLRLLYVTPELTATPGFMS-KLK--KIHSRGLLNL 161 (529)
Q Consensus 91 ~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~tpe~v~t~~~~~-~l~--~~~~~~~l~~ 161 (529)
+.|.++.+.++ |+.+..+.+..+..... ..+....+ .++|+ ++|||++- ++. +...+..|.+
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~---~qL~~~~~~~~~DIl------VaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEA---RQLASDPPECRIDIL------VATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHH---HHHhcCCCccccceE------EcCchHHHHhccCCCCcchhhceE
Confidence 99999999985 44444444443333322 22332222 34554 55555433 332 2344567999
Q ss_pred EEEecccccccCCCCCHHHHHHH----------------------------HHHHHh----CCCCCEEEEeecCChhHHH
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKL----------------------------SSLRNY----LPDVPILALTATAAPKVQK 209 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l----------------------------~~l~~~----~~~~~ii~lSAT~~~~~~~ 209 (529)
+||||||++.+.. |......+ ..+... +|....+.+|||++....+
T Consensus 299 LVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K 376 (620)
T KOG0350|consen 299 LVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK 376 (620)
T ss_pred EEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH
Confidence 9999999997522 21111111 111111 1222367888888776555
Q ss_pred HHHHHhccCCCeEEecc------CCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHH----
Q 009675 210 DVMESLCLQNPLVLKSS------FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS---- 279 (529)
Q Consensus 210 ~i~~~l~~~~~~~~~~~------~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~---- 279 (529)
...+.+..|..+... +..|....+........-+...+..+++.....++|+|+++.+.+.+++..|+
T Consensus 377 --l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~ 454 (620)
T KOG0350|consen 377 --LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC 454 (620)
T ss_pred --HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc
Confidence 555566666433221 11121111111111111233456667777778889999999999999999887
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEE
Q 009675 280 AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (529)
Q Consensus 280 ~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i 359 (529)
....++..|.|+++.+.|.+.+++|..|+++|||||++++||||+.+|+.||+||+|.+..+|+||+||++|+|+.|.|+
T Consensus 455 ~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 455 SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 23567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccHHHHHHHHHhccc
Q 009675 360 LYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 360 ~~~~~~d~~~~~~i~~~~~~ 379 (529)
.+.+..+...+..++++...
T Consensus 535 tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 535 TLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred EeeccccchHHHHHHHHhcc
Confidence 99999999999999988765
No 49
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.2e-41 Score=342.44 Aligned_cols=340 Identities=19% Similarity=0.262 Sum_probs=275.4
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (529)
...|+.+.+..+++..|++. ||..|+++|..||+.++.+.|+||++..|+|||++|.+.++.. ....+||+||
T Consensus 24 ~~~fe~l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 45677788999999999985 9999999999999999999999999999999999998777653 6678999999
Q ss_pred HHHHHHHHHHHHHcCC-----ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCcc
Q 009675 88 IALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (529)
Q Consensus 88 ~~L~~q~~~~l~~~gi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~ 160 (529)
|+++.|..+.+...++ ++....++......... +. ..+| +++|||++..|.. ..+.+.++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~r---lk----~~rI------vIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIR---LK----QTRI------VIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhh---hh----hceE------EecCchHHHHHHHhcCCCcccee
Confidence 9999999999888654 45444444433322111 11 1444 6777888777744 55667899
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccE---EEE
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF---YEV 236 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~---~~v 236 (529)
++|+||||.+.+.+. |+ ..+..|...+| ..|++++|||.+......+.+.+ ++|..++.+...+.++ .-|
T Consensus 170 lfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~m--rdp~lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 170 LFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFM--RDPALVRFNADDVQLFGIKQYV 243 (980)
T ss_pred EEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHHHh--cccceeecccCCceeechhhee
Confidence 999999999998654 66 45666777788 67899999999998877666644 5666666555555442 112
Q ss_pred EecC-------chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 237 RYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 237 ~~~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
..+. ....+++.|-++++..+-..+||||+....|+-++.+|...|+.|.++.|.|++++|..+++.++.-.+
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 2111 123467778888888888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH-HHHHHH
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~-~~~~~i 373 (529)
+|||+|+..+||||-++|++||+.|.|.+.++|.||+|||||.|..|.+++|+..+.. +.+..|
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999876644 444433
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-40 Score=335.44 Aligned_cols=342 Identities=20% Similarity=0.256 Sum_probs=263.7
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEEeCcHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lVi~P~~ 88 (529)
...++.+++.+.. .||..|+|.|.++++.++.++|++.+||||+|||++|.+|++.+ +-+++|++|++
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 5567788888887 59999999999999999999999999999999999999999864 45799999999
Q ss_pred HHHHHHHHHHHHcCCc------eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh----hccCC
Q 009675 89 ALMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (529)
Q Consensus 89 ~L~~q~~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~----~~~~~ 158 (529)
+|+.|.+..+.++.+. +...........+...... ...++ .+.||..+..+... .....
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~-----~k~di------li~TP~ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSD-----EKYDI------LISTPMRIVGLLGLGKLNIDLSK 288 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHH-----HHHHH------HhcCHHHHHHHhcCCCccchhhe
Confidence 9999999999987633 1111111111111111111 11344 44555544444333 34566
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC---CCCccEEE
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYE 235 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl~~~ 235 (529)
+.++|+||||.+.+. ..|+.....+-..+.. |++.+-+||||.+..+.+. ..+....+..+..+. ....+..+
T Consensus 289 V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~--~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEW--AELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred eeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHH--HHHhhccceeEEEecchhHhhhhhhh
Confidence 889999999999886 2255444444333333 6788889999999988773 333334444333222 12234444
Q ss_pred EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHH-HhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
..+......++-.+.+.+...-..+++||+.+.+.|.+|...| .-.++.+..+||+.++.+|.+++++|+.|++.||||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 5555555677788888888877789999999999999999999 667899999999999999999999999999999999
Q ss_pred eCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 315 T~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
|+++++|||+.+|+.||+||+|.+.-+|+||+||+||.|+.|.+++||+..|..+++.+..-.
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887765543
No 51
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-38 Score=354.82 Aligned_cols=321 Identities=22% Similarity=0.280 Sum_probs=235.6
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~ 91 (529)
++++++++.+.+.|++ .|+.+|+|+|.++++. +++|+|++++||||+|||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4567899999999998 6999999999999986 789999999999999999999999864 378999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEec
Q 009675 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDE 166 (529)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDE 166 (529)
.|+++.++. +|+.+..+.+....... . + ...+++++|||.+. .+.. ....+.+++|||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~------~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFD------SLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHH------HHHhCCchhhhcCCEEEEcC
Confidence 999988875 46777777665543211 1 1 13578888877542 2211 11235689999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC-ccEEEEE------e
Q 009675 167 AHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR------Y 238 (529)
Q Consensus 167 aH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~------~ 238 (529)
+|.+.+++. .+. +..+...+ ++.+++++|||.++. .++..+++... +.. ..+| .+...+. .
T Consensus 147 ~H~l~~~~r--g~~---le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~~-~~rpv~l~~~~~~~~~~~~ 215 (720)
T PRK00254 147 IHLIGSYDR--GAT---LEMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VVS-DWRPVKLRKGVFYQGFLFW 215 (720)
T ss_pred cCccCCccc--hHH---HHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---ccC-CCCCCcceeeEecCCeeec
Confidence 999987663 333 33334443 468999999999763 56677776431 111 1122 1110110 0
Q ss_pred cCc-----hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--------------------------------
Q 009675 239 KDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------- 281 (529)
Q Consensus 239 ~~~-----~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------------- 281 (529)
.+. .......+.+.++. +.++||||+||+.|+.++..|...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 216 EDGKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred cCcchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 110 01122334444543 567999999999999888766421
Q ss_pred -CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE-------eCCCC-CHHHHHHHHcccCCC
Q 009675 282 -GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRD 352 (529)
Q Consensus 282 -g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~-------~~~p~-s~~~y~Q~~GRagR~ 352 (529)
+.++.++||+|++++|..+.+.|++|.++|||||+++++|||+|.+++||+ ++.|. +...|.||+|||||.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 235899999999999999999999999999999999999999999999994 45543 678999999999997
Q ss_pred C--CCceEEEEEeccc
Q 009675 353 Q--LPSKSLLYYGMDD 366 (529)
Q Consensus 353 G--~~g~~i~~~~~~d 366 (529)
| ..|.++++....+
T Consensus 374 ~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 374 KYDEVGEAIIVATTEE 389 (720)
T ss_pred CcCCCceEEEEecCcc
Confidence 5 5688999987655
No 52
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-40 Score=319.27 Aligned_cols=344 Identities=21% Similarity=0.327 Sum_probs=270.3
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeC
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~ 85 (529)
...++|.+++|.+++++.+-. +||+.|+.+|+.||....+|+|+++++++|+|||.+|.++++.. ...++++.
T Consensus 23 evvdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 455789999999999999998 69999999999999999999999999999999999999999976 55699999
Q ss_pred cHHHHHHHHHHHHHHcCCce----eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009675 86 PLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (529)
|+++|++|..+....+|-.. ..+.++........ .+.... ..+ +++||++...+.+ ......+
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~---~i~~~~--~hi------vvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ---ALLKDK--PHI------VVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---hhhccC--cee------ecCCchhHHHhhccccccccce
Confidence 99999999998887765432 22222222221111 111111 122 5677777666643 3334558
Q ss_pred cEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCC---CccEEE
Q 009675 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYE 235 (529)
Q Consensus 160 ~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r---~nl~~~ 235 (529)
.++|+|||+.+...| |+.. +..+.+..| ++|++++|||.++++..- ..-.+.+|+.+....+. ..+...
T Consensus 171 KmfvlDEaDEmLs~g--fkdq---I~~if~~lp~~vQv~l~SAT~p~~vl~v--t~~f~~~pv~i~vkk~~ltl~gikq~ 243 (397)
T KOG0327|consen 171 KMFVLDEADEMLSRG--FKDQ---IYDIFQELPSDVQVVLLSATMPSDVLEV--TKKFMREPVRILVKKDELTLEGIKQF 243 (397)
T ss_pred eEEeecchHhhhccc--hHHH---HHHHHHHcCcchhheeecccCcHHHHHH--HHHhccCceEEEecchhhhhhheeee
Confidence 999999999999977 7744 455555555 799999999999998773 33344566554332221 111111
Q ss_pred EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
+..... +.++..|..+.+ .-...+|||||++.++.+...|...|..+..+||.|.+.+|..++..|++|+.+|||.|
T Consensus 244 ~i~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlItt 320 (397)
T KOG0327|consen 244 YINVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITT 320 (397)
T ss_pred eeeccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeec
Confidence 111111 237777777777 34568999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
+.+++|||+.++..||+|++|...++|+||+||+||.|.+|.++.++...|...++.+.+..
T Consensus 321 dl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 321 DLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred cccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 99999999999999999999999999999999999999999999999999999888887543
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-37 Score=345.60 Aligned_cols=335 Identities=22% Similarity=0.244 Sum_probs=234.2
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHH
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~ 92 (529)
++.++++++.+.+.+.. .|++ ++|+|.++++.+.+|++++++||||+|||+++.++++. .++++|+++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 35567899999999987 5887 99999999999999999999999999999999988764 3788999999999999
Q ss_pred HHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEecc
Q 009675 93 NQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEA 167 (529)
Q Consensus 93 q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViDEa 167 (529)
|+++.+++ .|..+....+....... . + ...+++++|||.+. .+.. ......+++||||||
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~Tpek~~------~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILTSEKAD------SLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEECHHHHH------HHHhCChhHHhhcCEEEEecc
Confidence 99998876 35665555443322111 0 1 12578777777432 2211 122456899999999
Q ss_pred cccccCCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEec-----Cc
Q 009675 168 HCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-----DL 241 (529)
Q Consensus 168 H~~~~~g~~fr~~y~~l-~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~-----~~ 241 (529)
|++.+.+ +.+.+..+ ..++...++.+++++|||.++. .++.++++... +...+....+...+... +.
T Consensus 145 H~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 145 HIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred hhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecc
Confidence 9998654 33444443 2233334578999999999753 56677775321 22121111121111110 00
Q ss_pred hhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC-------------------------CCceEEecCCCCH
Q 009675 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-------------------------GISCAAYHAGLND 294 (529)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~-------------------------g~~~~~~h~~l~~ 294 (529)
.......+..+++. ..++++||||++++.|+.+++.|.+. ..++..+||+|++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00000112222222 24568999999999999999988653 1257889999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC---------CCCHHHHHHHHcccCCCCC--CceEEEEEe
Q 009675 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (529)
Q Consensus 295 ~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~---------p~s~~~y~Q~~GRagR~G~--~g~~i~~~~ 363 (529)
++|..+++.|++|.++|||||+++++|||+|+.++|| .+. |.+..+|.||+|||||.|. .|.++++..
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865554 443 5589999999999999984 566777655
Q ss_pred cc-cHHHHHHHHH
Q 009675 364 MD-DRRRMEFILS 375 (529)
Q Consensus 364 ~~-d~~~~~~i~~ 375 (529)
.. +...+++++.
T Consensus 377 ~~~~~~~~~~~l~ 389 (674)
T PRK01172 377 SPASYDAAKKYLS 389 (674)
T ss_pred CcccHHHHHHHHc
Confidence 43 3555666654
No 54
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=311.45 Aligned_cols=342 Identities=19% Similarity=0.235 Sum_probs=272.2
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEeCc
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P 86 (529)
+..|.+++|+..+.+++.+. ||.+|+|+|++.|+.+|+++|++..+-||||||.||.+|++.+ +-++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 56789999999999999986 9999999999999999999999999999999999999999864 458999999
Q ss_pred HHHHHHHHHHHHHHcCCce----eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccCCcc
Q 009675 87 LIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (529)
Q Consensus 87 ~~~L~~q~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~~l~ 160 (529)
+++|+.|..+..+.+|--. ..+.++....+ .+..+ ..+ .++ +++||+.+.++. -...++.+.
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~ee---qf~~l-~~n--pDi------i~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEE---QFILL-NEN--PDI------IIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHH---HHHHh-ccC--CCE------EEecCceeeeeehheecccccee
Confidence 9999999999999875432 22223322222 22222 222 344 444555444442 224456789
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCC---CCccEEEE
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~nl~~~v 236 (529)
++|+|||+.+.++|+. .+|.++...+| +.+.++||||.+..... ...-|+.+|..++-... .+++....
T Consensus 167 yVVfdEadrlfemgfq-----eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQ-----EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred eeeehhhhHHHhhhhH-----HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhhe
Confidence 9999999999998843 67777778887 67999999999988766 55667888877662211 11111111
Q ss_pred EecCchhhHHHHHHHHHHhcC-CceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 237 RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~-~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
. .....++...|+.++.... +.+++||+.|+..+|.+...|+..|+.+..+.|.|++..|.....+|..++..++|.|
T Consensus 240 ~-~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvT 318 (529)
T KOG0337|consen 240 F-RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVT 318 (529)
T ss_pred e-eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEe
Confidence 1 1122467777777776643 4579999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHh
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
+++++|+|+|-.+.||+||+|.+..-|+||+||+.|.|+.|.++.++.+.|...+-.+-.-
T Consensus 319 dvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 319 DVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred hhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988776655443
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.1e-36 Score=346.30 Aligned_cols=306 Identities=21% Similarity=0.264 Sum_probs=220.4
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.++.+.+++.+|+ .|+++|+++++.++.|+|++++||||+|||.+++++++. .+.+++||+||++|+.|+++.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 3455667777898 699999999999999999999999999999754443322 368899999999999999999998
Q ss_pred cCC----ceeEeccCc--cHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCC
Q 009675 101 KGI----AGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (529)
Q Consensus 101 ~gi----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g 174 (529)
++. ....+.++. ...+.......+..+. .+++++||+ ++...........++++||||||++++|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~------rL~~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQ------FLSKNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHH------HHHHHHHhccccccCEEEEEChHHhhhcc
Confidence 653 333333222 2334444445555444 567666655 44433334445569999999999999876
Q ss_pred CC---------CH------------------HHHHHHHHHHHhCC-----CCCEEEEeecCChh-HHHHHH-HHhccCCC
Q 009675 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPK-VQKDVM-ESLCLQNP 220 (529)
Q Consensus 175 ~~---------fr------------------~~y~~l~~l~~~~~-----~~~ii~lSAT~~~~-~~~~i~-~~l~~~~~ 220 (529)
++ |. +.|.++..+...+. +.+++++|||+++. +...+. ..++.
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~--- 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF--- 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE---
Confidence 54 42 23444444544332 57899999999985 332222 22211
Q ss_pred eEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCccc---HHHHHHHHHhCCCceEEecCCCCHHHH
Q 009675 221 LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKAR 297 (529)
Q Consensus 221 ~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~---~e~l~~~L~~~g~~~~~~h~~l~~~~R 297 (529)
.+-.......|+...+...+ ++...+.++++..+ ..+||||++++. ++.+++.|+..|+++..+||+|
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred EecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 11111223345544444332 45556777776654 469999999888 9999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEE----eCccccccccCC-ccEEEEeCCCC------CHHHHHHHHcccC
Q 009675 298 SSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (529)
Q Consensus 298 ~~~~~~f~~g~~~VLVa----T~a~~~GIDip~-v~~VI~~~~p~------s~~~y~Q~~GRag 350 (529)
.+.+++|++|+++|||| |++++||||+|+ |++|||||+|+ ..+.|.|++||+-
T Consensus 366 ~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 22359999999999999 689999999999 89999999998 6788999999993
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-36 Score=349.06 Aligned_cols=291 Identities=22% Similarity=0.275 Sum_probs=209.1
Q ss_pred EEcCCCchHHHHHHHHHhcC----------------CCeEEEeCcHHHHHHHHHHHHHH----------------cCCce
Q 009675 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (529)
Q Consensus 58 v~apTGsGKTl~~~lp~l~~----------------~~~~lVi~P~~~L~~q~~~~l~~----------------~gi~~ 105 (529)
|+||||||||+||.+|++.+ +.++|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998632 35799999999999999998863 35667
Q ss_pred eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc--CCCCCHHHHHH
Q 009675 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (529)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~--~g~~fr~~y~~ 183 (529)
...++.....++..... . ..+|+++|||.+.. .+.. .....++.+++|||||+|.+.. +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~--LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYL--MLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHH--HHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 77777777766544321 1 36788888885521 1000 0112356799999999999975 67666655555
Q ss_pred HHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC--ccEEEEEecCc------------------hh
Q 009675 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDL------------------LD 243 (529)
Q Consensus 184 l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~--nl~~~v~~~~~------------------~~ 243 (529)
|..+.. .+.|+|+||||..+. +++.++|+...+..+....... ++.+.+...+. ..
T Consensus 152 L~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~ 227 (1490)
T PRK09751 152 LDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREG 227 (1490)
T ss_pred HHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhh
Confidence 554421 367999999999874 5678888766555443322222 22222211110 00
Q ss_pred h----HHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC---------------------------------CceE
Q 009675 244 D----AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISCA 286 (529)
Q Consensus 244 ~----~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---------------------------------~~~~ 286 (529)
. ....++..+. .+.++|||||||+.|+.++..|++.. ..+.
T Consensus 228 ~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 228 SIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 0 0112222222 34679999999999999999997631 1267
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-CCCceEEEEEe
Q 009675 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~-G~~g~~i~~~~ 363 (529)
.|||+|++++|..+++.|++|++++||||+++++|||+++|++||+++.|.|+.+|+||+||+||. |..+.++++..
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999996 44456664433
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9e-36 Score=325.09 Aligned_cols=317 Identities=15% Similarity=0.120 Sum_probs=214.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHhcC-----CC-eEEEeCcHHHHHHHHHHH
Q 009675 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-IVLVVSPLIALMENQVIG 97 (529)
Q Consensus 25 ~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~-dvlv~apTGsGKTl~~~lp~l~~-----~~-~~lVi~P~~~L~~q~~~~ 97 (529)
+....+++..||+ |+|+|.++|+.++.|+ ++++.+|||||||.++.++.+.. .. +.++++|+|+|+.|+.+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 4455667767998 9999999999999998 57788999999999665444322 23 455577999999999988
Q ss_pred HHHcC---------------------------CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH---
Q 009675 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--- 147 (529)
Q Consensus 98 l~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~--- 147 (529)
+.+++ +.+..+.++...... +..+. ....|+++|++.+.+..+.
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 87754 334445555544332 22222 2367999998766553321
Q ss_pred ---HHH--HhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCC
Q 009675 148 ---SKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (529)
Q Consensus 148 ---~~l--~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~ 219 (529)
..+ ......+.+.+||+|||| ...| |......|.......+ +.++++||||.+.++.+.....+ .+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~--~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS--AE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc--cC
Confidence 001 011124668899999999 3444 7776666644321122 26899999999887655332322 22
Q ss_pred CeEEecc---CCCCccEEEEEecCchhhHH----HHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCC
Q 009675 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAY----ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (529)
Q Consensus 220 ~~~~~~~---~~r~nl~~~v~~~~~~~~~~----~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l 292 (529)
+..+... ....++.. +.... ...++ ..+...+. ..++++||||||++.|+.+++.|++.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222111 11112222 11111 11222 22333333 3456899999999999999999999887 8999999
Q ss_pred CHHHHH-----HHHHHHhc----CC-------CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCc
Q 009675 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (529)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g 356 (529)
++.+|. .++++|++ |+ ..|||||+++++|||++. ++||++..| .++|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred eE-EEEE
Q 009675 357 KS-LLYY 362 (529)
Q Consensus 357 ~~-i~~~ 362 (529)
.+ +.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 33 4444
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.2e-36 Score=308.46 Aligned_cols=304 Identities=17% Similarity=0.094 Sum_probs=191.5
Q ss_pred CEEEEcCCCchHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc-CCceeEeccCccHHH---------HHH
Q 009675 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 119 (529)
|+++.||||+|||++|++|++. ..+++++++|+++|+.|+.+++... +.....+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 3678999999999999999999985 654444444322110 000
Q ss_pred HHHHhhcC---CCcccEEEeCcccccChhhH---HHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCC
Q 009675 120 IYEDLDSG---KPSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (529)
Q Consensus 120 ~~~~~~~~---~~~~~ll~~tpe~v~t~~~~---~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~ 193 (529)
........ -....++++||+.+...-+. ........ -..+++||||||.+.+++..+ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~-~~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLAS-IANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHH-hcCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 11111010 01234555555543221110 00011111 124789999999999865332 222222222 247
Q ss_pred CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEe-cCchhhHHHHHHHHHHh-cCCceEEEEeCCcccH
Q 009675 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTC 271 (529)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~-~~~~~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~ 271 (529)
.|+++||||++....+.+........+........+....+.+.. ......+...+.++++. ..+.++||||+|++.|
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 899999999986554332222111111111111000001111111 11111222333333332 2456899999999999
Q ss_pred HHHHHHHHhCCC--ceEEecCCCCHHHHHHH----HHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHH
Q 009675 272 DELSAYLSAGGI--SCAAYHAGLNDKARSSV----LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (529)
Q Consensus 272 e~l~~~L~~~g~--~~~~~h~~l~~~~R~~~----~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~ 345 (529)
+.+++.|++.+. .+..+||++++.+|.+. ++.|++|+..|||||+++++|||++ +++||++..| +++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999998766 49999999999999764 8899999999999999999999995 8899988766 8999999
Q ss_pred HcccCCCCCCc----eEEEEEeccc
Q 009675 346 SGRAGRDQLPS----KSLLYYGMDD 366 (529)
Q Consensus 346 ~GRagR~G~~g----~~i~~~~~~d 366 (529)
+||+||.|+.. ..++|+...+
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCC
Confidence 99999988543 5666665443
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.2e-35 Score=311.68 Aligned_cols=327 Identities=20% Similarity=0.199 Sum_probs=237.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. |+|.|..+++.++.|+ ++.|.||+|||++|.+|++.. +..++||+|+++|+.|..+.+..
T Consensus 92 ~rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 345667778986 8899999999999999 999999999999999999865 77899999999999998888776
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh----------------------hhcc
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSR 156 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~----------------------~~~~ 156 (529)
+|+.+..+.++.....+...+ ..+|+|+|.--++-..+...+.. ..-.
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 240 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLL 240 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcc
Confidence 588998888877655443322 36899999875543322222211 1113
Q ss_pred CCccEEEEecccccc-----------c-CC-C--------------------CCH-------------------------
Q 009675 157 GLLNLVAIDEAHCIS-----------S-WG-H--------------------DFR------------------------- 178 (529)
Q Consensus 157 ~~l~~iViDEaH~~~-----------~-~g-~--------------------~fr------------------------- 178 (529)
+.+.+.||||+|.++ . -+ . +|.
T Consensus 241 r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l 320 (656)
T PRK12898 241 RGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESL 320 (656)
T ss_pred cccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcc
Confidence 558899999999983 0 00 0 111
Q ss_pred -HHHH----HHHHH----HHh--C------------------------C----------------C--------------
Q 009675 179 -PSYR----KLSSL----RNY--L------------------------P----------------D-------------- 193 (529)
Q Consensus 179 -~~y~----~l~~l----~~~--~------------------------~----------------~-------------- 193 (529)
+.|. ....+ +.. + + +
T Consensus 321 ~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It 400 (656)
T PRK12898 321 PPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARIT 400 (656)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeeh
Confidence 0010 00000 000 0 0 0
Q ss_pred --------CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccE--EEEEecCchhhHHHHHHHHHHhc--CCceE
Q 009675 194 --------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCA 261 (529)
Q Consensus 194 --------~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~--~~v~~~~~~~~~~~~l~~~l~~~--~~~~~ 261 (529)
..+.+||||+... ..++.+.+++. +.. .+.++|+.. +.........+++..|.+.++.. .+.++
T Consensus 401 ~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~-vv~--IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 401 YQRFFRRYLRLAGMTGTAREV-AGELWSVYGLP-VVR--IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHHhhHHHhcccCcChHH-HHHHHHHHCCC-eEE--eCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0278999999864 56777777765 333 344444432 11111122356777888887653 35689
Q ss_pred EEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC---Ccc-----EEEEe
Q 009675 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHF 333 (529)
Q Consensus 262 IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip---~v~-----~VI~~ 333 (529)
||||+|++.++.+++.|.+.|+++..+||+++.. +..+..+..+...|+|||+++|||+|++ +|+ +||++
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 9999999999999999999999999999986644 4445555666667999999999999999 777 99999
Q ss_pred CCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 334 ~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
++|.|.+.|.||+||+||.|.+|.+++|++.+|.-.
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999999999999999999999999999999877543
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.3e-35 Score=300.24 Aligned_cols=293 Identities=18% Similarity=0.208 Sum_probs=200.6
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc--------CCceeEeccC
Q 009675 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (529)
Q Consensus 42 ~Q~~~i~~~l~g~d--vlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~--------gi~~~~~~~~ 111 (529)
+|.++++++.++++ +++.||||+|||.||++|++.....+++++|+++|++||.+.++++ +.....+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999999875 7889999999999999999988888999999999999999998874 2222223332
Q ss_pred ccHHHHHHHH---HHhhcC------------CCcccEEEeCcccccChhhHHHHHhh----------hccCCccEEEEec
Q 009675 112 QTMQVKTKIY---EDLDSG------------KPSLRLLYVTPELTATPGFMSKLKKI----------HSRGLLNLVAIDE 166 (529)
Q Consensus 112 ~~~~~~~~~~---~~~~~~------------~~~~~ll~~tpe~v~t~~~~~~l~~~----------~~~~~l~~iViDE 166 (529)
......... .....+ .....++.++|++ +..+... .....+++|||||
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~------l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDI------FVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHH------HHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 221111111 011111 1123344444443 3332211 0135689999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC------------C-----
Q 009675 167 AHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N----- 228 (529)
Q Consensus 167 aH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~----- 228 (529)
+|.++.|+.++...+..+..+.+.. ...+++++|||+++.+...+...+....+.....+. .
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 9999988877666554444443322 257999999999998888777653333333322221 0
Q ss_pred -C---CccEEEEEecCc-hhhHHHHHHH----HHHhcCCceEEEEeCCcccHHHHHHHHHhCC--CceEEecCCCCHHHH
Q 009675 229 -R---PNLFYEVRYKDL-LDDAYADLCS----VLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKAR 297 (529)
Q Consensus 229 -r---~nl~~~v~~~~~-~~~~~~~l~~----~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g--~~~~~~h~~l~~~~R 297 (529)
| |++.+.+..... ....+..+.+ .++...+.++||||+|++.++.+++.|++.| +.+..+||.+++.+|
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred cceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 1 345554444221 1222333333 3333456789999999999999999999865 578899999999998
Q ss_pred HHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccC
Q 009675 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (529)
Q Consensus 298 ~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRag 350 (529)
.+. ++.+|||||+++++|||++++ +|| ++ |.+.+.|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 754 478999999999999999987 666 45 999999999999997
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-34 Score=313.16 Aligned_cols=299 Identities=18% Similarity=0.243 Sum_probs=205.1
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHH---------HHHHHhc---------CCCeEEEeCcHHHHHHHHHHHHHH-cC
Q 009675 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-KG 102 (529)
Q Consensus 42 ~Q~~~i~~~l~g~dvlv~apTGsGKTl~---------~~lp~l~---------~~~~~lVi~P~~~L~~q~~~~l~~-~g 102 (529)
.|+++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.+ .|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999986 3333322 245899999999999998888865 22
Q ss_pred ------CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCC
Q 009675 103 ------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (529)
Q Consensus 103 ------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~ 176 (529)
.+.....++.... ... ... ...+++++|+.+. ....+.+++|||||||.++..+.
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~----~~~-t~~--k~~~Ilv~T~~L~-----------l~~L~~v~~VVIDEaHEr~~~~D- 308 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDE----LIN-TNP--KPYGLVFSTHKLT-----------LNKLFDYGTVIIDEVHEHDQIGD- 308 (675)
T ss_pred ccccCCceEEEEECCcchH----Hhh-ccc--CCCCEEEEeCccc-----------ccccccCCEEEccccccCccchh-
Confidence 2233444444311 000 111 1246766664321 11245689999999999987662
Q ss_pred CHHHHHHHHHHHHhCCC-CCEEEEeecCChhHHHHHHHHhccCCCeEEeccC-CCCccEEEEEecC--------chhhHH
Q 009675 177 FRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKD--------LLDDAY 246 (529)
Q Consensus 177 fr~~y~~l~~l~~~~~~-~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~--------~~~~~~ 246 (529)
..+.-++...+. .++++||||++.++.. +.+.++ ++..+...- ....+........ ......
T Consensus 309 -----llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 309 -----IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFP--NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred -----HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhc--CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 112223232222 4799999999877644 445443 444333221 1122222111110 001111
Q ss_pred HHHHHHHHh---cCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHH-hcCCCeEEEEeCcccc
Q 009675 247 ADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFGM 320 (529)
Q Consensus 247 ~~l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~VLVaT~a~~~ 320 (529)
..+...+.. ..++++|||++++.+++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+++++
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAER 458 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLES 458 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhc
Confidence 223333332 23457999999999999999999987 79999999999975 4667777 6899999999999999
Q ss_pred ccccCCccEEEEeC---CCC---------CHHHHHHHHcccCCCCCCceEEEEEecccHHHH
Q 009675 321 GIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (529)
Q Consensus 321 GIDip~v~~VI~~~---~p~---------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~ 370 (529)
|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.+|+.++...+
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH
Confidence 99999999999999 665 889999999999999 79999999998876443
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-33 Score=308.92 Aligned_cols=326 Identities=21% Similarity=0.218 Sum_probs=243.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|. .|++.|..++..++.|+ ++.|.||+|||++|.+|++. .+..++|++|++.|+.|..+.+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 44666778898 59999999999888887 99999999999999999984 488899999999999999988776
Q ss_pred --cCCceeEeccCcc-HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEeccccccc--
Q 009675 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-- 172 (529)
Q Consensus 101 --~gi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~~-- 172 (529)
+|+.+..+.++.. ...+...+ ..+|+|+||..++-..+...+. .....+.+.++||||||.++=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 6899998888777 55444322 2789999988765433333331 112345689999999999840
Q ss_pred ---------C--------------------CCCC-----------------------------HHHHHHH-HH----HHH
Q 009675 173 ---------W--------------------GHDF-----------------------------RPSYRKL-SS----LRN 189 (529)
Q Consensus 173 ---------~--------------------g~~f-----------------------------r~~y~~l-~~----l~~ 189 (529)
- +-|| .+.+..+ .. ++.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 0 0011 1111111 11 111
Q ss_pred hC--------------------------CC--------------------------------------CCEEEEeecCCh
Q 009675 190 YL--------------------------PD--------------------------------------VPILALTATAAP 205 (529)
Q Consensus 190 ~~--------------------------~~--------------------------------------~~ii~lSAT~~~ 205 (529)
.+ ++ ..+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 00 00 027788888854
Q ss_pred hHHHHHHHHhccCCCeEEeccCCCCccEEEEE--ecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC
Q 009675 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (529)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (529)
. ...+.+..++ .++..++++|....... ......+++..+.+.+.. ..+.++||||+|++.++.+++.|.+.
T Consensus 376 ~-~~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 E-EKEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred H-HHHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3 3455555544 34445666776654221 111235677788777765 36778999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccccccc---CCcc-----EEEEeCCCCCHHHHHHHHcccCCCC
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDi---p~v~-----~VI~~~~p~s~~~y~Q~~GRagR~G 353 (529)
|+++..+||++.+.++..+...+..| +|+|||+++|||+|+ |+|. +||++++|.|.+.|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999999888888877766 799999999999999 6999 9999999999999999999999999
Q ss_pred CCceEEEEEecccHH
Q 009675 354 LPSKSLLYYGMDDRR 368 (529)
Q Consensus 354 ~~g~~i~~~~~~d~~ 368 (529)
.+|.++.|++.+|.-
T Consensus 530 ~~G~s~~~is~eD~l 544 (790)
T PRK09200 530 DPGSSQFFISLEDDL 544 (790)
T ss_pred CCeeEEEEEcchHHH
Confidence 999999999987643
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-33 Score=282.70 Aligned_cols=317 Identities=21% Similarity=0.282 Sum_probs=230.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHH-cCCc---ee
Q 009675 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----~~~~lVi~P~~~L~~q~~~~l~~-~gi~---~~ 106 (529)
+.-++|.+|.......+.+ +.++++|||-|||..+.+-+... ++++|+++||+-|+.|+...+.+ .|++ .+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3457999999999888776 89999999999999887766532 56899999999999999999988 5664 44
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.+.+.....++...|. ..++++.||.++.+.- +....+...+.++|+||||+-.. . -.|..+..
T Consensus 91 ~ltGev~p~~R~~~w~-------~~kVfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvG--n---yAYv~Va~ 154 (542)
T COG1111 91 ALTGEVRPEEREELWA-------KKKVFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVG--N---YAYVFVAK 154 (542)
T ss_pred eecCCCChHHHHHHHh-------hCCEEEeccHHHHhHH----hcCccChHHceEEEechhhhccC--c---chHHHHHH
Confidence 6777788888877775 3689999998875532 22344555688999999999653 1 23555544
Q ss_pred -HHHhCCCCCEEEEeecCChhH--HHHHHHHhccCCCeEEecc-------------------------------------
Q 009675 187 -LRNYLPDVPILALTATAAPKV--QKDVMESLCLQNPLVLKSS------------------------------------- 226 (529)
Q Consensus 187 -l~~~~~~~~ii~lSAT~~~~~--~~~i~~~l~~~~~~~~~~~------------------------------------- 226 (529)
..+.-.+..+++||||+..+. ...+...|++.+-.+-...
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 233333556899999987643 3455666666432211000
Q ss_pred --------------C--CCCcc------EEEEEecCchh-----------------------------------------
Q 009675 227 --------------F--NRPNL------FYEVRYKDLLD----------------------------------------- 243 (529)
Q Consensus 227 --------------~--~r~nl------~~~v~~~~~~~----------------------------------------- 243 (529)
. ...++ ...........
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 0 00000 00000000000
Q ss_pred ---------------------------------hHHHHHH----HHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceE
Q 009675 244 ---------------------------------DAYADLC----SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (529)
Q Consensus 244 ---------------------------------~~~~~l~----~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~ 286 (529)
-++..+. +.++..++.++|||++.|++++.+.+.|.+.|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0111122 222334678999999999999999999999988774
Q ss_pred -Ee--------cCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCce
Q 009675 287 -AY--------HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (529)
Q Consensus 287 -~~--------h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~ 357 (529)
.+ ..||+++++.+++++|++|+++|||||++.++|+|+|+|++||.|+...|.--++||.||+||. ++|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 22 2479999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred EEEEEecccHHH
Q 009675 358 SLLYYGMDDRRR 369 (529)
Q Consensus 358 ~i~~~~~~d~~~ 369 (529)
.++++..++.+.
T Consensus 474 v~vLvt~gtrde 485 (542)
T COG1111 474 VVVLVTEGTRDE 485 (542)
T ss_pred EEEEEecCchHH
Confidence 999998885443
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.5e-33 Score=299.93 Aligned_cols=323 Identities=18% Similarity=0.190 Sum_probs=230.8
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH---
Q 009675 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (529)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~--- 100 (529)
.++.++.+|. +|+|.+++..+..++..++.|+||+|||++|.+|++.. +..++||+|+++|+.|+.+.+..
T Consensus 60 rEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 3455566675 55666666555555557999999999999999998753 66799999999999999998854
Q ss_pred -cCCceeEeccCcc-----HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hhccCCccEEEEecccccc
Q 009675 101 -KGIAGEFLSSTQT-----MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 101 -~gi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~~~ 171 (529)
+|+.+.....+.. ...+... ...+++|+||..++..-+...+.. ....+.+.++||||||+++
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~--------y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKI--------YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHh--------CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 6888776554311 1111111 237899999998866544444322 2234568999999999984
Q ss_pred cC-------------------------------CCCCH------------HHHHHHHHH---------------------
Q 009675 172 SW-------------------------------GHDFR------------PSYRKLSSL--------------------- 187 (529)
Q Consensus 172 ~~-------------------------------g~~fr------------~~y~~l~~l--------------------- 187 (529)
-. +.||. .....+..+
T Consensus 209 iDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~a 288 (762)
T TIGR03714 209 LDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLA 288 (762)
T ss_pred hccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHH
Confidence 10 00110 000000000
Q ss_pred -HHh--C------------------------CC--------------------------------------CCEEEEeec
Q 009675 188 -RNY--L------------------------PD--------------------------------------VPILALTAT 202 (529)
Q Consensus 188 -~~~--~------------------------~~--------------------------------------~~ii~lSAT 202 (529)
+.. + |+ ..+.+||+|
T Consensus 289 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 368 (762)
T TIGR03714 289 LRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGT 368 (762)
T ss_pred HHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 000 0 00 127789999
Q ss_pred CChhHHHHHHHHhccCCCeEEeccCCCCccEEEE---EecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHH
Q 009675 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (529)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~ 277 (529)
+... ..++.+..++ .++..++++|...... .+.. ..+++..+.+.+++ ..+.++||||+|++.++.++..
T Consensus 369 a~~~-~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~ 443 (762)
T TIGR03714 369 GKVA-EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSEL 443 (762)
T ss_pred ChhH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHH
Confidence 7553 3445555544 3455566777665432 2222 34677888887765 4677999999999999999999
Q ss_pred HHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC---------CccEEEEeCCCCCHHHHHHHHcc
Q 009675 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGR 348 (529)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip---------~v~~VI~~~~p~s~~~y~Q~~GR 348 (529)
|.+.|+++..+||++.+.++..+.+++..| .|+|||+++|||+|++ ++.+|++++.|+.... .||+||
T Consensus 444 L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GR 520 (762)
T TIGR03714 444 LLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGR 520 (762)
T ss_pred HHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhc
Confidence 999999999999999999988887777666 6999999999999999 9999999999988777 999999
Q ss_pred cCCCCCCceEEEEEecccHH
Q 009675 349 AGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 349 agR~G~~g~~i~~~~~~d~~ 368 (529)
+||.|.+|.++.|++.+|.-
T Consensus 521 tGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 521 SGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred ccCCCCceeEEEEEccchhh
Confidence 99999999999999987753
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=290.65 Aligned_cols=330 Identities=23% Similarity=0.335 Sum_probs=243.8
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHh---cC-CCeEEEeCcHHHHHH
Q 009675 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPAL---AK-PGIVLVVSPLIALME 92 (529)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~~~lp~l---~~-~~~~lVi~P~~~L~~ 92 (529)
..+.+++++.+.|+. -|++.+.|.|.-++++ ++.|+|.+|+.+|+|||||+..++.+ .. +++.|+++|+.+|++
T Consensus 197 deLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALAN 275 (830)
T COG1202 197 DELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALAN 275 (830)
T ss_pred cccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhc
Confidence 347889999999998 5999999999999988 66899999999999999999876544 33 889999999999999
Q ss_pred HHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecc
Q 009675 93 NQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (529)
Q Consensus 93 q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (529)
|.++.+++ +|+.+.+-.+..-...+.... .....++.+|+++|.|-+ +.+.+ -...+.+..+||||+
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~pv--~~~t~~dADIIVGTYEGi------D~lLRtg~~lgdiGtVVIDEi 347 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPV--VVDTSPDADIIVGTYEGI------DYLLRTGKDLGDIGTVVIDEI 347 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCcc--ccCCCCCCcEEEeechhH------HHHHHcCCcccccceEEeeee
Confidence 99998887 566554433222111111100 012234577777777633 23332 256778999999999
Q ss_pred ccccc--CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC-ccEEEEEecCchhh
Q 009675 168 HCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDD 244 (529)
Q Consensus 168 H~~~~--~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~~~~ 244 (529)
|.+-+ .||- -+ --+++++..+|+.|+|.||||..+. ..+.+.|+..- +.+. .|| .+..++.+.....+
T Consensus 348 HtL~deERG~R--Ld-GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~l-V~y~---~RPVplErHlvf~~~e~e 418 (830)
T COG1202 348 HTLEDEERGPR--LD-GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKL-VLYD---ERPVPLERHLVFARNESE 418 (830)
T ss_pred eeccchhcccc--hh-hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCee-Eeec---CCCCChhHeeeeecCchH
Confidence 99976 5543 22 4577888899999999999998766 45677777542 2221 122 22333333333345
Q ss_pred HHHHHHHHHHhc--------CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 245 AYADLCSVLKAN--------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 245 ~~~~l~~~l~~~--------~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
+++.+..+.+.. -.+++|||++||+.|+.|+..|...|+++.+||+||+..+|..+...|.++++.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 666666655431 246799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEE---EeCCCC-CHHHHHHHHcccCCCC--CCceEEEEEecc
Q 009675 317 AFGMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQ--LPSKSLLYYGMD 365 (529)
Q Consensus 317 a~~~GIDip~v~~VI---~~~~p~-s~~~y~Q~~GRagR~G--~~g~~i~~~~~~ 365 (529)
|++.|+|.|.-.+|. -++.-+ |+..|.|+.|||||-+ ..|.++++..++
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999644332 122222 8999999999999977 456677776543
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=303.19 Aligned_cols=298 Identities=16% Similarity=0.107 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---hcC-CCeEEEeCcHHHHHHHHHHHHHHcCCc----eeEe
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~---l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~----~~~~ 108 (529)
..||++|.++++.++.+++.++++|||+|||+++...+ +.. .+++||++|+++|+.|+.+.+++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765332 223 348999999999999999999986521 1112
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
.++... .....++++||+.+.... . .....+++|||||||++.. ..+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~------~-~~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP------K-EWFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch------h-hhccccCEEEEEchhcccc---------hhHHHHH
Confidence 111110 123567777776543211 1 1235689999999999875 2233445
Q ss_pred HhCC-CCCEEEEeecCChhHHHH--HHHHhccCCCeEEeccC----CC---CccEEEE-Ee--cC---------------
Q 009675 189 NYLP-DVPILALTATAAPKVQKD--VMESLCLQNPLVLKSSF----NR---PNLFYEV-RY--KD--------------- 240 (529)
Q Consensus 189 ~~~~-~~~ii~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~~----~r---~nl~~~v-~~--~~--------------- 240 (529)
..++ ..++++||||+....... +...++ +.....+. .. ....+.. .. ..
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 5554 456899999997543221 111221 11111000 00 0000000 00 00
Q ss_pred ----chhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 241 ----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 241 ----~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
....+...+.+.+.. ..+.+++|||.++++++.+++.|++.|.++..+||+++.++|..+++.|++|+..||||
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 001111222222221 23457889999999999999999999999999999999999999999999999999999
Q ss_pred e-CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 315 T-VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 315 T-~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
| +.+++|+|+|++++||++.+|+|...|+|++||++|.+..+...++|+.-|
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 9 899999999999999999999999999999999999986665555555443
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=310.37 Aligned_cols=334 Identities=23% Similarity=0.272 Sum_probs=245.7
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~ 97 (529)
...+...|.. .|+..|+++|.+|+..+.+|+|++|..|||||||+||++|++.. ..++|+|.||++|++||+++
T Consensus 56 ~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHH
Confidence 3445666766 58889999999999999999999999999999999999999864 55789999999999999999
Q ss_pred HHHc----C--CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 98 LKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 98 l~~~----g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
|+++ + +....+.+......+..++. + ..+|++++|+++-.......-......+.+++|||||+|-.-
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 9983 3 56666777777666654332 3 378888888876442222222223334459999999999874
Q ss_pred c-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeE-EeccCCCCccEEEEEecCc-------
Q 009675 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDL------- 241 (529)
Q Consensus 172 ~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~nl~~~v~~~~~------- 241 (529)
. .|.+.....++|..+.+.++ +.++|+.|||..... .....+....... +..+-......+.+...+.
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~--e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~ 286 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG--EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES 286 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH--HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh
Confidence 3 56666666777777777766 567899999987652 2233333322222 3322222222222222220
Q ss_pred -hhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHH----HHHHhCC----CceEEecCCCCHHHHHHHHHHHhcCCCe
Q 009675 242 -LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (529)
Q Consensus 242 -~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (529)
..+....+..++.. ..+-++|+|+.+++.++.++ +.+...+ ..+..|+|++..++|.++...|++|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 01222222222222 24668999999999999997 4444455 5689999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
++++|+++.-|||+.+++.||.++.|. +..++.|+.|||||.++.+..++.+..+
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999 9999999999999999777777766644
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.9e-33 Score=309.55 Aligned_cols=304 Identities=17% Similarity=0.145 Sum_probs=210.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCccHHHHH
Q 009675 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (529)
Q Consensus 43 Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~ 118 (529)
-.+++.++.++++++++|+||||||.+|.++++.. +++++|+.|++.++.|..+++.+ ++.......+......
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-- 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-- 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--
Confidence 34566777788999999999999999999988854 57899999999999999998854 4433211111110000
Q ss_pred HHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-cccCCCCCHHHHHHHHHHHHh-CCCCCE
Q 009675 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVPI 196 (529)
Q Consensus 119 ~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-~~~~g~~fr~~y~~l~~l~~~-~~~~~i 196 (529)
. ......+|.|+||.++ +..+........+++|||||+|. ..+- ||--. .+..+... .++.++
T Consensus 85 ----~--~~s~~t~I~v~T~G~L-----lr~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~--ll~~i~~~lr~dlql 149 (819)
T TIGR01970 85 ----N--KVSRRTRLEVVTEGIL-----TRMIQDDPELDGVGALIFDEFHERSLDA--DLGLA--LALDVQSSLREDLKI 149 (819)
T ss_pred ----c--ccCCCCcEEEECCcHH-----HHHHhhCcccccCCEEEEeccchhhhcc--chHHH--HHHHHHHhcCCCceE
Confidence 0 1112367777776543 22334444567899999999996 3331 22211 12333333 357899
Q ss_pred EEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchh---h-HHHHHHHHHHhcCCceEEEEeCCcccHH
Q 009675 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD---D-AYADLCSVLKANGDTCAIVYCLERTTCD 272 (529)
Q Consensus 197 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~---~-~~~~l~~~l~~~~~~~~IIf~~s~~~~e 272 (529)
|+||||++.... .+.++ ..+.+...+..-| +...+....... . ....+...++. ..+.+|||++++.+++
T Consensus 150 IlmSATl~~~~l---~~~l~-~~~vI~~~gr~~p-Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 150 LAMSATLDGERL---SSLLP-DAPVVESEGRSFP-VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred EEEeCCCCHHHH---HHHcC-CCcEEEecCccee-eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 999999997653 33332 2233222211111 211111111111 1 11234444444 3467999999999999
Q ss_pred HHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC------------
Q 009675 273 ELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------ 337 (529)
Q Consensus 273 ~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------------ 337 (529)
.+++.|.+ .++.+..+||+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999987 478999999999999999999999999999999999999999999999999999986
Q ss_pred ------CHHHHHHHHcccCCCCCCceEEEEEecccHHHH
Q 009675 338 ------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (529)
Q Consensus 338 ------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~ 370 (529)
|..+|.||+|||||. .+|.|+.+|+.++...+
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 345799999999999 79999999998776543
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.4e-33 Score=311.90 Aligned_cols=298 Identities=19% Similarity=0.226 Sum_probs=208.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH-cCCc----eeEeccCccHH
Q 009675 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTMQ 115 (529)
Q Consensus 44 ~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-~gi~----~~~~~~~~~~~ 115 (529)
.+.+.++.++++++++||||||||.+|.++++.. .++++|+.|+|+++.|..+++.+ ++.. +.+......
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-- 88 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-- 88 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc--
Confidence 4566677788999999999999999999998864 46899999999999999998854 4433 222111110
Q ss_pred HHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCC
Q 009675 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDV 194 (529)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~ 194 (529)
......++.|+||..+ +..+........+++|||||+|..+-. .|+.- ..+..+.+.+ ++.
T Consensus 89 ----------~~~~~t~I~v~T~G~L-----lr~l~~d~~L~~v~~IIlDEaHER~l~-~Dl~L--~ll~~i~~~lr~~l 150 (812)
T PRK11664 89 ----------KVGPNTRLEVVTEGIL-----TRMIQRDPELSGVGLVILDEFHERSLQ-ADLAL--ALLLDVQQGLRDDL 150 (812)
T ss_pred ----------ccCCCCcEEEEChhHH-----HHHHhhCCCcCcCcEEEEcCCCccccc-cchHH--HHHHHHHHhCCccc
Confidence 0112356766666543 223334445678999999999984311 12211 1223333433 578
Q ss_pred CEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHH-----HHHHHHHHhcCCceEEEEeCCcc
Q 009675 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERT 269 (529)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IIf~~s~~ 269 (529)
++++||||.+.... .+.+. ..+.+...+..- .+...+..... .+++ ..+...++. ..+.+|||+++++
T Consensus 151 qlilmSATl~~~~l---~~~~~-~~~~I~~~gr~~-pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ 223 (812)
T PRK11664 151 KLLIMSATLDNDRL---QQLLP-DAPVIVSEGRSF-PVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVG 223 (812)
T ss_pred eEEEEecCCCHHHH---HHhcC-CCCEEEecCccc-cceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHH
Confidence 99999999987632 33332 223322222111 12222211111 1112 234444443 3567999999999
Q ss_pred cHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC---------
Q 009675 270 TCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--------- 337 (529)
Q Consensus 270 ~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~--------- 337 (529)
+++.+++.|.+ .++.+..+||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 578899999999999999999999999999999999999999999999999998875
Q ss_pred ---------CHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 338 ---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 338 ---------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
|..+|.||+|||||. .+|.|+.+|+..+...
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 446899999999999 5999999999876643
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.5e-32 Score=292.52 Aligned_cols=325 Identities=20% Similarity=0.211 Sum_probs=242.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. |++.|..+...+..|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 446677888975 8899999988888777 99999999999999999853 366799999999999999988777
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEeccccccc---
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~~~~--- 172 (529)
+|+.+..+.++.....+...+ ..+++|+||-.++-.-+...+ ......+.+.++||||+|.+.-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 588888888877766554433 268999998866443332222 1223456799999999999841
Q ss_pred ----------CCC------------------CCH------------HHHHHHHH----------------------HHHh
Q 009675 173 ----------WGH------------------DFR------------PSYRKLSS----------------------LRNY 190 (529)
Q Consensus 173 ----------~g~------------------~fr------------~~y~~l~~----------------------l~~~ 190 (529)
.+. ||. .....+.. ++..
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 000 111 00000110 0000
Q ss_pred --C------------------------CC--------------------------------------CCEEEEeecCChh
Q 009675 191 --L------------------------PD--------------------------------------VPILALTATAAPK 206 (529)
Q Consensus 191 --~------------------------~~--------------------------------------~~ii~lSAT~~~~ 206 (529)
+ ++ ..+.+||+|+...
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0 00 1267888888644
Q ss_pred HHHHHHHHhccCCCeEEeccCCCCccEEEE---EecCchhhHHHHHHHHHH--hcCCceEEEEeCCcccHHHHHHHHHhC
Q 009675 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAG 281 (529)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v---~~~~~~~~~~~~l~~~l~--~~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (529)
...+.+..++. ++..++++|...... .+.+ ..+++..+.+.++ ...+.++||||+|++.++.+++.|.+.
T Consensus 354 -~~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 354 -EEEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred -HHHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 34455555543 444566666654431 1222 2456777766663 246789999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC-------ccEEEEeCCCCCHHHHHHHHcccCCCCC
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~-------v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (529)
|+++..+||+ +.+|+..+..|..+...|+|||+++|||+|++. .-+||+++.|.|.+.|.|+.||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 789999999999999999999999999999998 4599999999999999999999999999
Q ss_pred CceEEEEEecccHH
Q 009675 355 PSKSLLYYGMDDRR 368 (529)
Q Consensus 355 ~g~~i~~~~~~d~~ 368 (529)
+|.+..|++.+|.-
T Consensus 507 ~G~s~~~ls~eD~l 520 (745)
T TIGR00963 507 PGSSRFFLSLEDNL 520 (745)
T ss_pred CcceEEEEeccHHH
Confidence 99999999988754
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.6e-32 Score=311.99 Aligned_cols=293 Identities=19% Similarity=0.262 Sum_probs=203.6
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
.++.+.+.+..|+ +|+++|+.+++.++.|+|++++||||+|||+ |.+|+.. .+.+++||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455555555565 6999999999999999999999999999997 5555532 36889999999999999999988
Q ss_pred HcC----Ccee---EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 100 EKG----IAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 100 ~~g----i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
.++ +... .++++.+...+......+..+. .+++++||. ++......... .++++||||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~------rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTM------FLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHH------HHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 753 3332 3567777766666566666544 567666654 43333222222 799999999999998
Q ss_pred CC---------CCCHHH-HHH-------------------HHHHHHhCC-CCC--EEEEeecCCh-hHHHHHHHHhccCC
Q 009675 173 WG---------HDFRPS-YRK-------------------LSSLRNYLP-DVP--ILALTATAAP-KVQKDVMESLCLQN 219 (529)
Q Consensus 173 ~g---------~~fr~~-y~~-------------------l~~l~~~~~-~~~--ii~lSAT~~~-~~~~~i~~~l~~~~ 219 (529)
++ .+|.++ ... +..+.+..| +.+ ++++|||..+ .+...+...+ ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~ 291 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LG 291 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cc
Confidence 65 236653 122 112222333 233 5678999544 3332221111 01
Q ss_pred CeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCc---ccHHHHHHHHHhCCCceEEecCCCCHHH
Q 009675 220 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKA 296 (529)
Q Consensus 220 ~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~---~~~e~l~~~L~~~g~~~~~~h~~l~~~~ 296 (529)
..+-.......|+...+.... .....+.++++..+ ..+||||+++ +.|+.+++.|.+.|+++..+||+++.
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred eEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 111111222344444333222 12345666776654 4689999999 99999999999999999999999973
Q ss_pred HHHHHHHHhcCCCeEEEEe----CccccccccCC-ccEEEEeCCCC
Q 009675 297 RSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (529)
Q Consensus 297 R~~~~~~f~~g~~~VLVaT----~a~~~GIDip~-v~~VI~~~~p~ 337 (529)
.++++|++|+++||||| ++++||||+|+ |++|||||+|+
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999994 89999999999 89999999997
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-31 Score=302.64 Aligned_cols=314 Identities=20% Similarity=0.267 Sum_probs=221.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeE
Q 009675 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKEK-GI---AGEF 107 (529)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----~~~~lVi~P~~~L~~q~~~~l~~~-gi---~~~~ 107 (529)
.-++|++|.+++..++.+ ++++++|||+|||+++.+++... ++++|||+|+++|+.|+.+.++++ ++ ....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 346899999999988887 99999999999999988776542 789999999999999999999884 44 4555
Q ss_pred eccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHH-HH
Q 009675 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SS 186 (529)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l-~~ 186 (529)
+++......+...+. ..+++++||+.+... .+........+++|||||||++.... .|..+ ..
T Consensus 92 ~~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~----l~~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~ 155 (773)
T PRK13766 92 FTGEVSPEKRAELWE-------KAKVIVATPQVIEND----LIAGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAER 155 (773)
T ss_pred EeCCCCHHHHHHHHh-------CCCEEEECHHHHHHH----HHcCCCChhhCcEEEEECCccccccc-----cHHHHHHH
Confidence 666665555444432 257888888765321 11223345568999999999986421 12222 22
Q ss_pred HHHhCCCCCEEEEeecCChh--HHHHHHHHhccCCCeEEe-------ccCCCCccEEEEE--------------------
Q 009675 187 LRNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVR-------------------- 237 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~--~~~~i~~~l~~~~~~~~~-------~~~~r~nl~~~v~-------------------- 237 (529)
++...+...+++||||+... ....+.+.|++....+.. .....+.+.+...
T Consensus 156 ~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 33444455689999998532 222333333321100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009675 238 -------------------------------------------------------------------------------- 237 (529)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (529)
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence
Q ss_pred -------------------------ecCchhhHHHHHHHHHHh----cCCceEEEEeCCcccHHHHHHHHHhCCCceEEe
Q 009675 238 -------------------------YKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (529)
Q Consensus 238 -------------------------~~~~~~~~~~~l~~~l~~----~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~ 288 (529)
.......++..|.++++. .++.++||||+++..|+.|++.|...|+.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 000001133334444433 467899999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE
Q 009675 289 HAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (529)
Q Consensus 289 h~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~ 360 (529)
||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|. |.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEE
Confidence 886 999999999999999999999999999999999999999999999999999999999999875 77777
Q ss_pred EEecccH
Q 009675 361 YYGMDDR 367 (529)
Q Consensus 361 ~~~~~d~ 367 (529)
++..+..
T Consensus 475 l~~~~t~ 481 (773)
T PRK13766 475 LIAKGTR 481 (773)
T ss_pred EEeCCCh
Confidence 7765543
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=8.2e-31 Score=288.74 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=233.5
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEecc
Q 009675 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g---~dvlv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (529)
.+++.|+++++.+.++ +++++.||||+|||.+|+.++ +..++.+||++|+++|+.|+++.+++ +|.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999974 789999999999999998654 44578999999999999999999987 6888899999
Q ss_pred CccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHH--HHHHHHH
Q 009675 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (529)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y--~~l~~l~ 188 (529)
+.+...+...+..+..+. .+++++|+..+. ....++++|||||+|..+.++++ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 988888887787777765 678888775432 23456899999999998877654 4444 5666677
Q ss_pred HhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC---CCCccEEEEEecC--------chhhHHHHHHHHHHhcC
Q 009675 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKD--------LLDDAYADLCSVLKANG 257 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl~~~v~~~~--------~~~~~~~~l~~~l~~~~ 257 (529)
....+.|++++|||++.+....+.. +.-....+...+ ..|.+...-.... .....++.+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 7788999999999998776654432 110111111111 1222222111000 01122233333333 3
Q ss_pred CceEEEEeCCc------------------------------------------------------------ccHHHHHHH
Q 009675 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (529)
Q Consensus 258 ~~~~IIf~~s~------------------------------------------------------------~~~e~l~~~ 277 (529)
+.++|||+|++ ..++++++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 55788887753 246788899
Q ss_pred HHhC--CCceEEecCCCC--HHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHH
Q 009675 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEA 341 (529)
Q Consensus 278 L~~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------------s~~~ 341 (529)
|.+. +.++..+|+++. .++++++++.|.+|+.+|||+|+++++|+|+|+|++|+.++... ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 9886 789999999986 46789999999999999999999999999999999997666442 3467
Q ss_pred HHHHHcccCCCCCCceEEEEEecccHHHHHHH
Q 009675 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (529)
Q Consensus 342 y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i 373 (529)
|.|++||+||.++.|.+++.....+-..+..+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999999976654443333333
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3e-31 Score=291.81 Aligned_cols=320 Identities=20% Similarity=0.257 Sum_probs=230.4
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhcC----CCeEEEeCcHHHHHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~~lp~l~~----~~~~lVi~P~~~L~~q~ 94 (529)
+.+.+.+.+.++. .|+..+.|.|++++...+. ++|+++++|||+|||+.+.+.++.. ++++|+|+|+++|+.+.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 4567778888876 6998899999999887664 5999999999999999998887754 57999999999999999
Q ss_pred HHHHH---HcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccC--hhhHHHHHhhhccCCccEEEEecccc
Q 009675 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT--PGFMSKLKKIHSRGLLNLVAIDEAHC 169 (529)
Q Consensus 95 ~~~l~---~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t--~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (529)
++.++ .+|+++....+........ + ...+|+++|||.+-+ ..+-. -...+++|||||+|.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~~-----l----~~~~ViVtT~EK~Dsl~R~~~~------~~~~V~lvViDEiH~ 157 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDER-----L----ARYDVIVTTPEKLDSLTRKRPS------WIEEVDLVVIDEIHL 157 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchhh-----h----ccCCEEEEchHHhhHhhhcCcc------hhhcccEEEEeeeee
Confidence 99998 6899999888776543311 1 237899999886642 11111 234589999999999
Q ss_pred cccC--CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCe-EEec-cCCCCccE-EEEEecC----
Q 009675 170 ISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKS-SFNRPNLF-YEVRYKD---- 240 (529)
Q Consensus 170 ~~~~--g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~-~~~~-~~~r~nl~-~~v~~~~---- 240 (529)
+.+. |.-.. ..+...+...+.+++++||||.++- .++..+++-.... .+.. +..++... ..+....
T Consensus 158 l~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 158 LGDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK 232 (766)
T ss_pred cCCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc
Confidence 9763 32211 2244455555668999999999876 6778888765331 1111 11122111 1111111
Q ss_pred -----chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh---C------------------C------------
Q 009675 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA---G------------------G------------ 282 (529)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~---~------------------g------------ 282 (529)
.....+..+.+.++ .++++||||+||+.+...|+.|+. . +
T Consensus 233 ~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 TWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 11122233333333 466899999999999999999883 0 0
Q ss_pred ----CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEE----EeC-----CCCCHHHHHHHHccc
Q 009675 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRA 349 (529)
Q Consensus 283 ----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI----~~~-----~p~s~~~y~Q~~GRa 349 (529)
..+.++|+||+.++|..+.+.|++|.++|||||+.++.|+|+|.=++|| .|+ .+-+.-+|.|+.|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 1467899999999999999999999999999999999999999655555 455 456789999999999
Q ss_pred CCCCC--CceEEEEE
Q 009675 350 GRDQL--PSKSLLYY 362 (529)
Q Consensus 350 gR~G~--~g~~i~~~ 362 (529)
||-|- .|.++++.
T Consensus 391 GRPg~d~~G~~~i~~ 405 (766)
T COG1204 391 GRPGYDDYGEAIILA 405 (766)
T ss_pred CCCCcCCCCcEEEEe
Confidence 99873 34555554
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=8.6e-31 Score=283.48 Aligned_cols=302 Identities=17% Similarity=0.164 Sum_probs=205.3
Q ss_pred CCcHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCcee---Eecc
Q 009675 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIAGE---FLSS 110 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g--~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~-gi~~~---~~~~ 110 (529)
++||+|++++..+.. | +..++++|||+|||++.+..+......+|||+|+..|+.||.+++.++ .+... .+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 689999999999884 3 478999999999999987666666788999999999999999999985 22221 1211
Q ss_pred CccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH----HHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~----~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.. +.. ......++++|+.++...... ...........+++||+||||.+.. +.|. .
T Consensus 335 ~~----k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr---~ 394 (732)
T TIGR00603 335 DA----KER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFR---R 394 (732)
T ss_pred Cc----ccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHH---H
Confidence 11 000 011256888888876542111 1112223334689999999999854 2222 2
Q ss_pred HHHhCCCCCEEEEeecCChhHH--HHHHHHhccCCCeEEecc--------CCCCccEEEEEec-----------------
Q 009675 187 LRNYLPDVPILALTATAAPKVQ--KDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYK----------------- 239 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~--~~i~~~l~~~~~~~~~~~--------~~r~nl~~~v~~~----------------- 239 (529)
+...+.....++||||+..... .++... -.|.++..+ +-.+.-.+++...
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~~~~L~~L---iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDKITDLNFL---IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCchhhhhhh---cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 3344455668999999975432 122111 223333221 1111111111110
Q ss_pred ----CchhhHHHHHHHHHHhc--CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEE
Q 009675 240 ----DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVV 312 (529)
Q Consensus 240 ----~~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VL 312 (529)
.....++..+..+++.+ .+.++||||.+...++.+++.| .+..+||++++.+|.+++++|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 00112344444445433 6779999999999999888887 246689999999999999999875 88999
Q ss_pred EEeCccccccccCCccEEEEeCCC-CCHHHHHHHHcccCCCCCCceE-------EEEEecccH
Q 009675 313 VATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 367 (529)
Q Consensus 313 VaT~a~~~GIDip~v~~VI~~~~p-~s~~~y~Q~~GRagR~G~~g~~-------i~~~~~~d~ 367 (529)
|+|.++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++.+..
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 999999999999999999999987 5999999999999998766554 556665543
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=3.5e-31 Score=281.20 Aligned_cols=315 Identities=25% Similarity=0.369 Sum_probs=210.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcCCcee---
Q 009675 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIAGE--- 106 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~l~~~gi~~~--- 106 (529)
+.-.+|++|.+.+..+| |++++|++|||+|||.++..-++.. .+++|+++|++-|+.||...+...+++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 33479999999999999 9999999999999999888777653 78999999999999999988888776522
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.+.+......+..++. ..+++++||.++...-.-.... .++.+.++||||||+-.. .|.|-..++.+..
T Consensus 138 ~l~~~~~~~~r~~i~~-------s~~vff~TpQil~ndL~~~~~~---~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVA-------SKRVFFRTPQILENDLKSGLHD---ELSDFSLIVFDECHRTSK-NHPYNNIMREYLD 206 (746)
T ss_pred eccCccCCCchhhhhc-------ccceEEeChHhhhhhccccccc---ccceEEEEEEcccccccc-cccHHHHHHHHHH
Confidence 2222222222322221 3788899988775532111111 146689999999999765 2333333333323
Q ss_pred HHHhCCCCCEEEEeecCChhHH---HHHHHHhccC-----------------C----CeEE-------------------
Q 009675 187 LRNYLPDVPILALTATAAPKVQ---KDVMESLCLQ-----------------N----PLVL------------------- 223 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~---~~i~~~l~~~-----------------~----~~~~------------------- 223 (529)
+... ..++++||||+..+.. ..|. .|... . |.-+
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~v~~~I~-~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQVQNVID-NLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred hhhc--cccEEEEecCCCccHHHHHHHHH-hhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 3222 3399999999875321 1111 11100 0 0000
Q ss_pred ---------e----c-cCC----------CCccEEE----------------------EE----------------ecC-
Q 009675 224 ---------K----S-SFN----------RPNLFYE----------------------VR----------------YKD- 240 (529)
Q Consensus 224 ---------~----~-~~~----------r~nl~~~----------------------v~----------------~~~- 240 (529)
. . .+. .++.... ++ .+.
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 0 0 000 0000000 00 000
Q ss_pred ----------------------------chhhHHHHHHHHH----HhcCCceEEEEeCCcccHHHHHHHHHh---CCCce
Q 009675 241 ----------------------------LLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSA---GGISC 285 (529)
Q Consensus 241 ----------------------------~~~~~~~~l~~~l----~~~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~ 285 (529)
....++..+.+++ ...++.++||||.+|+.|+.|..+|.+ .|+.+
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 0001222222222 223567899999999999999999983 24444
Q ss_pred EEec--------CCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCce
Q 009675 286 AAYH--------AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (529)
Q Consensus 286 ~~~h--------~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~ 357 (529)
..+- .+|++.++.+++++|++|+++|||||+++++|+|++.|+.||-||...|+...+||.|| ||.- .|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCe
Confidence 4433 48999999999999999999999999999999999999999999999999999999999 9984 689
Q ss_pred EEEEEeccc
Q 009675 358 SLLYYGMDD 366 (529)
Q Consensus 358 ~i~~~~~~d 366 (529)
|+++++..+
T Consensus 522 ~vll~t~~~ 530 (746)
T KOG0354|consen 522 CVLLTTGSE 530 (746)
T ss_pred EEEEEcchh
Confidence 998888443
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=2.4e-30 Score=275.59 Aligned_cols=292 Identities=20% Similarity=0.245 Sum_probs=212.8
Q ss_pred EEEcCCCchHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCCccc
Q 009675 57 FCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (529)
Q Consensus 57 lv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (529)
++.||||+|||.+|+.. ++..++.+||++|+++|+.|+++.+++ ++.....+++..+..++...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 46899999999998643 345688999999999999999999987 6788889999998888888888887665 67
Q ss_pred EEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHH--HHHHHHHHhCCCCCEEEEeecCChhHHHH
Q 009675 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (529)
Q Consensus 133 ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y--~~l~~l~~~~~~~~ii~lSAT~~~~~~~~ 210 (529)
++++|+..+.. ...++++|||||+|+.+.|+.++ |.| +.+..++....+.|++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 77777664432 24568999999999999887654 445 45777888888999999999988776554
Q ss_pred HHHHhccCCCeEEec---cCCCCccEEEEEecC-----chhhHHHHHHHHHHhcCCceEEEEeCCccc------------
Q 009675 211 VMESLCLQNPLVLKS---SFNRPNLFYEVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTT------------ 270 (529)
Q Consensus 211 i~~~l~~~~~~~~~~---~~~r~nl~~~v~~~~-----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~------------ 270 (529)
+.. +.-....+.. ....|.+...-.... .....++.+.+.++ .++++|||+|++..
T Consensus 147 ~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred Hhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 322 1000001110 111222222111111 01122333334443 35579999777632
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCceEEecCCCCHHHH--H
Q 009675 271 ------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR--S 298 (529)
Q Consensus 271 ------------------------------------------------~e~l~~~L~~~--g~~~~~~h~~l~~~~R--~ 298 (529)
++++++.|.+. +.++..+|++++...+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 58889999886 7889999999987766 8
Q ss_pred HHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHHHHHHcccCCCCCCceEEEEE-ecc
Q 009675 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYY-GMD 365 (529)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------------s~~~y~Q~~GRagR~G~~g~~i~~~-~~~ 365 (529)
.+++.|.+|+.+|||+|+++++|+|+|+|++|+..+... ....|+|.+||+||.+++|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999999999999999999999987555432 3578999999999999999988654 444
Q ss_pred c
Q 009675 366 D 366 (529)
Q Consensus 366 d 366 (529)
+
T Consensus 383 ~ 383 (505)
T TIGR00595 383 H 383 (505)
T ss_pred C
Confidence 3
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.5e-29 Score=261.60 Aligned_cols=325 Identities=20% Similarity=0.256 Sum_probs=259.8
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPL 87 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~ 87 (529)
..++....++.+.+...++|+ +|..|++++..+... .+-++++.-|||||+++++.++. .+..+...+||
T Consensus 242 ~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPT 320 (677)
T COG1200 242 GIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPT 320 (677)
T ss_pred CCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccH
Confidence 344566677777777778996 999999999999864 35689999999999998876654 58899999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009675 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (529)
--|+.|.++.+.+ +|+.+..+.+....+.+..+.+.+.+|. .+++++|.-.+ .+....+++.++|
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALi---------Qd~V~F~~LgLVI 389 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALI---------QDKVEFHNLGLVI 389 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhh---------hcceeecceeEEE
Confidence 9999999988776 6899999999999999999999999987 77877766543 3445566799999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe-ccCCCCccEEEEEecCc
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDL 241 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~~~~~ 241 (529)
|||-|+..- .+=..++.+-+ ..-++.||||+-|.... ....+--+..++. -++-|..+.-.+...+.
T Consensus 390 iDEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~ 458 (677)
T COG1200 390 IDEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHER 458 (677)
T ss_pred EeccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecccc
Confidence 999999532 23334566655 56799999999998765 4444443333333 35566677766666665
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccH--------HHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTC--------DELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~--------e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
....++.+.+.+. .+.++.|.|+-.++. +.+++.|+.. ++.+..+||.|+++++.+++++|++|+++|
T Consensus 459 ~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 459 RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 5666666666665 466899999877654 4566677643 667999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
||||.+.+-|||+||..++|..+.-. .+.+.-|--||+||.+..+.|+++|.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999988643 78899999999999999999999998775
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.8e-29 Score=282.02 Aligned_cols=317 Identities=17% Similarity=0.174 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh---cC--CCeEEEeCcHHHHHHHHHHHHH-HcCCceeEec
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l---~~--~~~~lVi~P~~~L~~q~~~~l~-~~gi~~~~~~ 109 (529)
.|.|+|..++..++.. ..+++...+|.|||+-..+.+- .. ..++|||+|. +|..||..++. ++++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5899999999887654 4788999999999976544331 22 4689999998 89999999985 4777766665
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccC-hhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
........ .+-...-...++++++.+.+.. +.....+. ...++++||||||++..-...-...|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~----~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQAL----AAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHh----hcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44322111 0000111135677777666554 22222232 235899999999998621111123466676665
Q ss_pred HhCCCCCEEEEeecCChhHHHHHHHHhccCCCeE----------------------------------------------
Q 009675 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLV---------------------------------------------- 222 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~---------------------------------------------- 222 (529)
... ..+++||||+...-..++...+.+-.|..
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 543 35799999986432222222222211111
Q ss_pred ------------------------------------Eec------cCCCCcc-EEEEEec--------------------
Q 009675 223 ------------------------------------LKS------SFNRPNL-FYEVRYK-------------------- 239 (529)
Q Consensus 223 ------------------------------------~~~------~~~r~nl-~~~v~~~-------------------- 239 (529)
++. .+....+ .+.+...
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 110 0000000 0000000
Q ss_pred --------------CchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHH-hCCCceEEecCCCCHHHHHHHHHHH
Q 009675 240 --------------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (529)
Q Consensus 240 --------------~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (529)
...+.++..|.++++...+.++||||+++..+..+++.|+ ..|+.+..+||+|+..+|.++++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0012345567778887778899999999999999999995 6799999999999999999999999
Q ss_pred hcC--CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 305 ~~g--~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
+++ ..+|||||+++++|+|++.+++|||||+|++++.|.||+||+||.|+.+.+.+++...
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 974 6999999999999999999999999999999999999999999999998876665433
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=7.9e-30 Score=288.53 Aligned_cols=298 Identities=18% Similarity=0.232 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCc----HHHHHHHHHHHHHH-cCCceeEecc
Q 009675 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (529)
Q Consensus 42 ~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P----~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (529)
.-.++++++.+++.++++|+||||||. ++|.+.. .+.+++..| .++|+.+..+.+.. +|..+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 344566666666777888999999998 7885432 234555567 46888887777765 4433322110
Q ss_pred CccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-cccCCCCCHHHHHHHHHHHH
Q 009675 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-~~~~g~~fr~~y~~l~~l~~ 189 (529)
+.+- .....+|+|+||.++. ..+......+.+++|||||||. ..+ .||... .|..+..
T Consensus 156 ----------f~~~--~s~~t~I~v~TpG~LL-----~~l~~d~~Ls~~~~IIIDEAHERsLn--~DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 156 ----------FNDQ--VSDNTMVKLMTDGILL-----AEIQQDRLLMQYDTIIIDEAHERSLN--IDFILG--YLKELLP 214 (1294)
T ss_pred ----------Cccc--cCCCCCEEEEChHHHH-----HHHhcCCccccCcEEEecCccccccc--cchHHH--HHHHhhh
Confidence 0000 0123567666655432 2333334467799999999995 554 346543 3444555
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC-ccEEEEEecCc---hhhHHHHHHHHH---HhcCCceEE
Q 009675 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVL---KANGDTCAI 262 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~---~~~~~~~l~~~l---~~~~~~~~I 262 (529)
..|+.++|+||||.+.. .+.+.++ +.|.+...+-.-| .++|....... ..+.+..+...+ ...+.+.+|
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F~-~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHcC-CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 55788999999999864 3344332 3444333221111 22222111110 122333333332 234567899
Q ss_pred EEeCCcccHHHHHHHHHhCCCc---eEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC----
Q 009675 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~---- 335 (529)
||++++.+++.+++.|.+.+++ +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++++
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988764 6789999999999999876 588899999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 336 -----------p---~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
| .|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 4678999999999999 6899999999887654
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=268.90 Aligned_cols=330 Identities=19% Similarity=0.233 Sum_probs=237.4
Q ss_pred HHhcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhcC-------------CCeEEEeCcHHHHHHHHHH
Q 009675 31 RWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVLVVSPLIALMENQVI 96 (529)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~~lp~l~~-------------~~~~lVi~P~~~L~~q~~~ 96 (529)
+..|+|..|...|.++++.+.. +.+++|+||||+|||-.|+|.+|.. +.++++|+|+++|+...++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 4779999999999999999875 5799999999999999999888742 5689999999999999888
Q ss_pred HHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccc--cChhhHHHHHhhhccCCccEEEEeccccc
Q 009675 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (529)
Q Consensus 97 ~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v--~t~~~~~~l~~~~~~~~l~~iViDEaH~~ 170 (529)
.+.+ +|+.+..+.+........ +. ..+++++|||.. .|...... ..-.+.+.++||||+|.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeEEeeeehhh
Confidence 7765 588888888776554433 22 389999999953 33221111 112345889999999998
Q ss_pred cc-CCCCCHHHHHHHHHHH-HhCCCCCEEEEeecCChhHHHHHHHHhccCCCe---EEeccCCCCccEEEEE---ecC--
Q 009675 171 SS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVR---YKD-- 240 (529)
Q Consensus 171 ~~-~g~~fr~~y~~l~~l~-~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~---~~~~~~~r~nl~~~v~---~~~-- 240 (529)
-+ .|.-......+...+. .....+.+++||||.|+- .|+..+|+.+.+. .+...+..-.+...+. .+.
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~ 328 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR 328 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccch
Confidence 65 4432222222222222 233478899999999975 7889999886322 2222332222222221 110
Q ss_pred -----chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC----C-------------------CceEEecCCC
Q 009675 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-------------------ISCAAYHAGL 292 (529)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g-------------------~~~~~~h~~l 292 (529)
..+..++.+.+++++ +.+++|||.+|+.+.+.|+.|.+. | ...+.+|+||
T Consensus 329 ~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm 406 (1230)
T KOG0952|consen 329 QQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGM 406 (1230)
T ss_pred hhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccccc
Confidence 011233455566654 668999999999999999988752 1 2467899999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC-----C------CHHHHHHHHcccCCC--CCCceEE
Q 009675 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----K------SMEAFYQESGRAGRD--QLPSKSL 359 (529)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p-----~------s~~~y~Q~~GRagR~--G~~g~~i 359 (529)
.-.+|.-+.+.|..|.++||+||..++.|+|+|. ..||..+-+ + ++-..+|..|||||- +..|.++
T Consensus 407 ~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 407 LRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred chhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEE
Confidence 9999999999999999999999999999999995 455544433 2 567889999999995 4668888
Q ss_pred EEEecccHHHHHHHHHhc
Q 009675 360 LYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 360 ~~~~~~d~~~~~~i~~~~ 377 (529)
+..+.+.......++...
T Consensus 486 IiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred EEecccHHHHHHHHHcCC
Confidence 888887777777777654
No 82
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=240.93 Aligned_cols=296 Identities=18% Similarity=0.273 Sum_probs=214.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|.++-+.|++++++-. .||++|...|.+||+...-|.|++++|..|-|||.+|.+..|+. .-.++|++.||
T Consensus 42 sgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred cchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 456778899999999998 69999999999999999999999999999999999999998875 23589999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH--hhhccCCccE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~--~~~~~~~l~~ 161 (529)
+|+-|..+...++ ++++....++...+........ . . ..+++|||++..|. +..+.+.+..
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~--P------hivVgTPGrilALvr~k~l~lk~vkh 188 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----C--P------HIVVGTPGRILALVRNRSLNLKNVKH 188 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----C--C------eEEEcCcHHHHHHHHhccCchhhcce
Confidence 9999988877764 4566666666665544433321 1 1 22678888877774 4455677899
Q ss_pred EEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCC---ccE-EE
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRP---NLF-YE 235 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~---nl~-~~ 235 (529)
+|+||++.+.++- |.|. .+.++.+.-| ..|++.+|||.+.+.+.-..+.+ .+|..+-. .-..- .+. |-
T Consensus 189 FvlDEcdkmle~l-DMrR---DvQEifr~tp~~KQvmmfsatlskeiRpvC~kFm--QdPmEi~vDdE~KLtLHGLqQ~Y 262 (387)
T KOG0329|consen 189 FVLDECDKMLEQL-DMRR---DVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFM--QDPMEIFVDDEAKLTLHGLQQYY 262 (387)
T ss_pred eehhhHHHHHHHH-HHHH---HHHHHhhcCcccceeeeeeeecchhhHHHHHhhh--cCchhhhccchhhhhhhhHHHHH
Confidence 9999999998754 3443 3444444444 78899999999999877555544 34432211 10000 111 11
Q ss_pred EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
+..++ ..+-..+.++|....-..++||+.+... +. | ..+ +|||
T Consensus 263 vkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R---l~----------------------------f---~kr-~vat 305 (387)
T KOG0329|consen 263 VKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR---LS----------------------------F---QKR-LVAT 305 (387)
T ss_pred Hhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh---hh----------------------------h---hhh-hHHh
Confidence 11111 2233344444544445579999977544 10 2 113 8999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
+.||+|+|+..|+.|++||+|.+.++|+||+|||||.|..|.++.|.+..+
T Consensus 306 ~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999999999999999999999999999999999999999999999988664
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.4e-28 Score=258.91 Aligned_cols=295 Identities=20% Similarity=0.260 Sum_probs=205.1
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce---eEec
Q 009675 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFLS 109 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~----g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~---~~~~ 109 (529)
-.+|++|++++.++.+ ++..++++|||+|||.+++..+-.....+|||+|+.+|+.||.+.+....... ..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 3699999999999998 89999999999999999887776666779999999999999988877743321 1111
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
++. . ...+ ..+.+.|...+.... .......+.+++||+||||++..-. |..+.....
T Consensus 115 ~~~-~-----------~~~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~a~~------~~~~~~~~~ 171 (442)
T COG1061 115 GGE-K-----------ELEP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLPAPS------YRRILELLS 171 (442)
T ss_pred Cce-e-----------ccCC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCCcHH------HHHHHHhhh
Confidence 111 0 0001 246666665554432 2222223368999999999987622 333333322
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEec--------cCCCCccEEEEEecCch-------------------
Q 009675 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYKDLL------------------- 242 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------~~~r~nl~~~v~~~~~~------------------- 242 (529)
. ..++++||||+.......+.....+..+.++.. ++-.|..++.+......
T Consensus 172 ~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 172 A--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred c--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 2 223999999987544222222222222444332 22233222222221000
Q ss_pred -----------------hhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH
Q 009675 243 -----------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (529)
Q Consensus 243 -----------------~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (529)
..+...+...+..+ .+.+++|||.+...++.++..+...|+ +..+.+..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 01112222333333 366899999999999999999998888 89999999999999999999
Q ss_pred hcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCC-CCCCce
Q 009675 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (529)
Q Consensus 305 ~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR-~G~~g~ 357 (529)
+.|++++||++.++..|+|+|+++.+|......|...|+||+||.-| ...++.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999 443443
No 84
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.1e-28 Score=265.51 Aligned_cols=325 Identities=20% Similarity=0.208 Sum_probs=242.6
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. +++.|.-..-.+..|+ +..|.||+|||++..+|++.. +..+-|++|+--|+.+..+.+..
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 456777888975 8899998877777777 999999999999999998754 78899999999999998888765
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc----
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS---- 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~---- 171 (529)
+|+.+..+.+......+...+. .+|.|+|.--++-.-+...+. .....+.+.+.||||+|.++
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 7999999988888877766554 789999987666544433331 22234568899999999974
Q ss_pred -------cCCCCCHHHHHHHHH----------------------------------------------------------
Q 009675 172 -------SWGHDFRPSYRKLSS---------------------------------------------------------- 186 (529)
Q Consensus 172 -------~~g~~fr~~y~~l~~---------------------------------------------------------- 186 (529)
.-...-...|..+..
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 000000001110000
Q ss_pred ---HHHh------C------------------------CC--------------------------------------CC
Q 009675 187 ---LRNY------L------------------------PD--------------------------------------VP 195 (529)
Q Consensus 187 ---l~~~------~------------------------~~--------------------------------------~~ 195 (529)
+... + |+ ..
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 0000 0 00 02
Q ss_pred EEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEe--cCchhhHHHHHHHHHHh--cCCceEEEEeCCcccH
Q 009675 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (529)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~ 271 (529)
+.+||+|+... ...+.+..++. ++..++++|........ ......++..+.+.+.. ..+.++||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 66788887543 34455555443 44455667765533211 11224677788887754 3778999999999999
Q ss_pred HHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC---Ccc-----EEEEeCCCCCHHHHH
Q 009675 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (529)
Q Consensus 272 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip---~v~-----~VI~~~~p~s~~~y~ 343 (529)
+.+++.|.+.|++...+||++...++..+.+.+..|. |+|||+++|||+|++ +|. +||+++.|.|.+.|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888877776 999999999999995 899 999999999999999
Q ss_pred HHHcccCCCCCCceEEEEEecccH
Q 009675 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 344 Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
|+.||+||.|.+|.+..|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998864
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.6e-27 Score=262.69 Aligned_cols=323 Identities=20% Similarity=0.193 Sum_probs=263.2
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHc----C--CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPL 87 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~----g--~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~ 87 (529)
-..+..+.+....+...|+|. -||-|..||+.+.+ + .|-++|+.-|.|||-+++- .|+..++.+.|++||
T Consensus 574 G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPT 652 (1139)
T COG1197 574 GFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPT 652 (1139)
T ss_pred CCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEccc
Confidence 345677889999999999997 89999999999874 3 5889999999999988764 455679999999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009675 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (529)
.-|++|..+.+++ +.+.+..++.-.+.++...+...+..|. ++|+++|+-++.+ ....++|+++|
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~k---------dv~FkdLGLlI 721 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSK---------DVKFKDLGLLI 721 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCC---------CcEEecCCeEE
Confidence 9999999998887 5788889999999999999999999987 8888888765543 34456799999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-CCCCccEEEEEecCch
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLL 242 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~ 242 (529)
|||-|+..- ..-..++....++-++-||||+-|.... ....|+++-.++.++ .+|-.+.-.|...+..
T Consensus 722 IDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~ 790 (1139)
T COG1197 722 IDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL 790 (1139)
T ss_pred EechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCChH
Confidence 999999532 2223344444589999999999999877 777788876666554 4555555555554421
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 009675 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (529)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (529)
-.-+.+...+. .++++....|..+..+++++.|++. ..++++-||.|+..+-++++..|.+|+++|||||...+.
T Consensus 791 -~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEt 867 (1139)
T COG1197 791 -LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIET 867 (1139)
T ss_pred -HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeec
Confidence 11223333333 3567777788999999999999986 567899999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 321 GIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 321 GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
|||+|+++.+|.-+... .+.+.+|.-||+||.++.+.|+++|.+.
T Consensus 868 GIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 868 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999777654 7899999999999999999999999864
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=5.1e-28 Score=274.89 Aligned_cols=300 Identities=18% Similarity=0.203 Sum_probs=197.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCccHHH
Q 009675 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (529)
Q Consensus 44 ~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (529)
.+++.++..++.++++|+||||||. ++|.+.. .+.+++..|.+--+.....++.+ +|.+.....+.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 3566666666778899999999998 6776542 34566677988777766666554 454432222111000
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc-cccCCCCCHHHHHHHHHHHHhCCCCC
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~-~~~~g~~fr~~y~~l~~l~~~~~~~~ 195 (529)
.+-. ....+|.|+|+.++ +..+.....+..+++|||||||. ..+. ||--. .+..+....|+.+
T Consensus 150 -----~~~~--s~~T~I~~~TdGiL-----Lr~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~--lLk~il~~rpdLK 213 (1283)
T TIGR01967 150 -----HDQV--SSNTLVKLMTDGIL-----LAETQQDRFLSRYDTIIIDEAHERSLNI--DFLLG--YLKQLLPRRPDLK 213 (1283)
T ss_pred -----Cccc--CCCceeeeccccHH-----HHHhhhCcccccCcEEEEcCcchhhccc--hhHHH--HHHHHHhhCCCCe
Confidence 0000 12366766666543 22333334467799999999995 5442 34332 2445555667889
Q ss_pred EEEEeecCChhHHHHHHHHhccCCCeEEeccCC-CCccEEEEEecCc---hhhHHHHHHHHHH---hcCCceEEEEeCCc
Q 009675 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (529)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~IIf~~s~ 268 (529)
+|+||||.+.. .+.+.++ ..|.+...+.. ...++|....... ..+....+...+. ....+.+|||+++.
T Consensus 214 lIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999999754 3444443 33443332211 1122222111110 1122233333322 23456899999999
Q ss_pred ccHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC--------
Q 009675 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (529)
Q Consensus 269 ~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~-------- 337 (529)
.+++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999999864 4588999999999999886543 3479999999999999999999999999543
Q ss_pred ----------CHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 338 ----------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
|..+|.||+|||||.| +|.|+.+|+..+...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6789999999999998 999999999877654
No 87
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=6e-29 Score=244.24 Aligned_cols=273 Identities=17% Similarity=0.216 Sum_probs=183.5
Q ss_pred CeEEEeCcHHHHHHHHHHHHHHcCCce-----e--EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH
Q 009675 79 GIVLVVSPLIALMENQVIGLKEKGIAG-----E--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151 (529)
Q Consensus 79 ~~~lVi~P~~~L~~q~~~~l~~~gi~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~ 151 (529)
+.++|+-|.++|++|..+.++++.-.. . .+.++..... .. ..+.-+|..+++||+++..+.
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~---Q~---------~ql~~g~~ivvGtpgRl~~~i 354 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRT---QC---------KQLKDGTHIVVGTPGRLLQPI 354 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHH---HH---------HHhhcCceeeecCchhhhhhh
Confidence 458999999999999999777742211 0 1111111111 11 122223444677777666554
Q ss_pred h--hhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-------CCCEEEEeecCChhHHHHHH-HHhccCCCe
Q 009675 152 K--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVM-ESLCLQNPL 221 (529)
Q Consensus 152 ~--~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-------~~~ii~lSAT~~~~~~~~i~-~~l~~~~~~ 221 (529)
+ ...+....++|+|||+.++..|.+ ..+.++...+| ..+.+.+|||...-....+. +.++.+..+
T Consensus 355 s~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwV 429 (725)
T KOG0349|consen 355 SKGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWV 429 (725)
T ss_pred hccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeE
Confidence 3 233455789999999999987855 55556666665 35788999997642222111 111111111
Q ss_pred EEeccC----------------------------------CCCccEEEEEecCchhhHHH-----HHHHHHHhcCCceEE
Q 009675 222 VLKSSF----------------------------------NRPNLFYEVRYKDLLDDAYA-----DLCSVLKANGDTCAI 262 (529)
Q Consensus 222 ~~~~~~----------------------------------~r~nl~~~v~~~~~~~~~~~-----~l~~~l~~~~~~~~I 262 (529)
-++..- .+.|+..--...+....... .-+..++++...++|
T Consensus 430 dLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkai 509 (725)
T KOG0349|consen 430 DLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAI 509 (725)
T ss_pred ecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceE
Confidence 111110 01111111111111111111 122344556677899
Q ss_pred EEeCCcccHHHHHHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCH
Q 009675 263 VYCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~ 339 (529)
|||.|+.+|+.|.+++++.| ++|+.+||+..+.+|.+.++.|+.+.++.||||+++++|||+.++-++|+..+|...
T Consensus 510 ifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k 589 (725)
T KOG0349|consen 510 IFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDK 589 (725)
T ss_pred EEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCccc
Confidence 99999999999999999864 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 340 EAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 340 ~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
.+|+||+||+||..+.|.++.++.....+
T Consensus 590 ~nyvhrigrvgraermglaislvat~~ek 618 (725)
T KOG0349|consen 590 TNYVHRIGRVGRAERMGLAISLVATVPEK 618 (725)
T ss_pred chhhhhhhccchhhhcceeEEEeeccchh
Confidence 99999999999999999999888655433
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.7e-26 Score=251.76 Aligned_cols=325 Identities=21% Similarity=0.206 Sum_probs=241.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. +++.|.-.--.+..|+ +..|+||+|||+++.+|++. .+..+-|++|+..|+.|..+.+..
T Consensus 70 vrEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 345666778875 8889988877777776 99999999999999999963 355688999999999999988776
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~~--- 172 (529)
+|+.+..+.++.....+...+. .+|+|+||-.++-....+.+. .....+.+.++||||||.++=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 6899999988888877665542 789999988775433322221 112356689999999999840
Q ss_pred --------CCCCCHHHHHHHHHHHH------------------------------------------------------h
Q 009675 173 --------WGHDFRPSYRKLSSLRN------------------------------------------------------Y 190 (529)
Q Consensus 173 --------~g~~fr~~y~~l~~l~~------------------------------------------------------~ 190 (529)
-+.+-...|..+..+.. .
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 00000001111100000 0
Q ss_pred --C------------------------C----------------C----------------------CCEEEEeecCChh
Q 009675 191 --L------------------------P----------------D----------------------VPILALTATAAPK 206 (529)
Q Consensus 191 --~------------------------~----------------~----------------------~~ii~lSAT~~~~ 206 (529)
+ + + ..+.+||+|+...
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 0 0 0 1267888888644
Q ss_pred HHHHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC
Q 009675 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (529)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (529)
...+.+..++. ++..++++|..... ..+. ...+++..+.+.+.. ..++++||||+|++.++.+++.|.+.
T Consensus 379 -~~E~~~iY~l~---vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 379 -AEEFREIYNLD---VVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred -HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 34455555443 44556677766543 2222 234678888888865 67789999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCc----------------------------------
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------- 327 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v---------------------------------- 327 (529)
|+++..+||. +.+|+..+..|..+...|+|||+++|||+|++--
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999995 7899999999999999999999999999998632
Q ss_pred ----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 328 ----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 328 ----~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
=+||....|.|..---|-.||+||.|.||.+..|.+.+|.-
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 37999999999999999999999999999999999988753
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.1e-26 Score=248.94 Aligned_cols=325 Identities=20% Similarity=0.190 Sum_probs=227.9
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++-++.+|.. +++.|.-.--++..|+ ++.|+||+|||++|.+|++.. +..++||+|++.|+.|..+.+..
T Consensus 71 vrEa~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 71 VREVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred HHHHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 345566777875 6788887776676666 999999999999999999853 66799999999999999988887
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc----
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS---- 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~---- 171 (529)
+|+.+..+.++.....+...+ ..+++|+||-.++-..+...+. .....+.+.++||||||.++
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 578888888887766654443 2688888887663322221110 01123568999999999984
Q ss_pred -------cCCCCCHHHHHHHHHHHHhCC---------------CCC----------------------------------
Q 009675 172 -------SWGHDFRPSYRKLSSLRNYLP---------------DVP---------------------------------- 195 (529)
Q Consensus 172 -------~~g~~fr~~y~~l~~l~~~~~---------------~~~---------------------------------- 195 (529)
.-..+-...|..+..+...+. +..
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 111111223333222222111 111
Q ss_pred --------------------------------------------------------------------------------
Q 009675 196 -------------------------------------------------------------------------------- 195 (529)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (529)
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence
Q ss_pred --EEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEEEeCCc
Q 009675 196 --ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLER 268 (529)
Q Consensus 196 --ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~ 268 (529)
+-+||+|+... ...+.+..++ .++..+.++|..... ..+. ....++..+.+.++. ..+.|+||||+|+
T Consensus 380 ~kLsGMTGTa~te-~~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Si 454 (896)
T PRK13104 380 NKLSGMTGTADTE-AYEFQQIYNL---EVVVIPTNRSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSI 454 (896)
T ss_pred chhccCCCCChhH-HHHHHHHhCC---CEEECCCCCCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcH
Confidence 23333333222 1122222221 122233445544321 1111 224567777766643 4678999999999
Q ss_pred ccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC----------------------
Q 009675 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD---------------------- 326 (529)
Q Consensus 269 ~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~---------------------- 326 (529)
+.++.+++.|.+.|++...+||++.+.++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 455 e~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~ 532 (896)
T PRK13104 455 EASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEA 532 (896)
T ss_pred HHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHH
Confidence 9999999999999999999999999999999999999995 9999999999999861
Q ss_pred -----------c-----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 327 -----------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 327 -----------v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
| =+||-...+.|-.---|-.||+||.|.||.+..|.+.+|.-
T Consensus 533 ~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 533 VKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred HHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1 37899999999999999999999999999999999988753
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=7.3e-26 Score=251.72 Aligned_cols=309 Identities=14% Similarity=0.121 Sum_probs=191.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEeCcHHHHHHHHHHHHHH-----cC-
Q 009675 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~~L~~q~~~~l~~-----~g- 102 (529)
|+..+|||.|+.+......+.-+++.||||+|||.+++..+.. . ...+++..||++++++.++++.+ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 5445799999988654444566889999999999998776542 2 36899999999999999999874 22
Q ss_pred CceeEeccCccHHHH-HHHHH----------------H-hhcCC---CcccEEEeCcccccChhhH--HHHHhhhccCCc
Q 009675 103 IAGEFLSSTQTMQVK-TKIYE----------------D-LDSGK---PSLRLLYVTPELTATPGFM--SKLKKIHSRGLL 159 (529)
Q Consensus 103 i~~~~~~~~~~~~~~-~~~~~----------------~-~~~~~---~~~~ll~~tpe~v~t~~~~--~~l~~~~~~~~l 159 (529)
......++....... ..... . +..+. --..+.++|...+....+- ....+...+ .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-cc
Confidence 234444443322110 00000 0 00000 0123444444422211000 001111111 12
Q ss_pred cEEEEecccccccCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHhccCC--------CeEE------
Q 009675 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN--------PLVL------ 223 (529)
Q Consensus 160 ~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~~~~--------~~~~------ 223 (529)
++|||||+|.+..+. . ..|..+.+.. ...++|+||||++...++.+.+.++... |.+-
T Consensus 441 svvIiDEVHAyD~ym----~--~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 441 SVLIVDEVHAYDAYM----Y--GLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred CeEEEechhhCCHHH----H--HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 489999999964321 1 1223232222 3688999999999998887777654321 1110
Q ss_pred ----eccCC----CCccEEEEEec--C---chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC---CceEE
Q 009675 224 ----KSSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAA 287 (529)
Q Consensus 224 ----~~~~~----r~nl~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g---~~~~~ 287 (529)
..... .......+... . .....++.+.+.++ .+.+++|||||++.++++++.|++.+ ..+..
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 00000 00111112111 1 11122333333332 46689999999999999999999865 67999
Q ss_pred ecCCCCHHHH----HHHHHHH-hcCC---CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC
Q 009675 288 YHAGLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (529)
Q Consensus 288 ~h~~l~~~~R----~~~~~~f-~~g~---~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (529)
+||.++..+| .++++.| ++|+ ..|||||+++++|||+ +++++|....| ++.++||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4567778 5665 4799999999999999 68999998888 8899999999999875
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.8e-25 Score=237.75 Aligned_cols=321 Identities=21% Similarity=0.255 Sum_probs=222.5
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~~L~~q~~~~l~~~gi~ 104 (529)
......|+|+ +-++|++||.++..|..|+|.|+|.+|||+++-.++. .+..++++-+|.++|-+|..+.++...-.
T Consensus 288 pe~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 288 PEMALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hhHHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc
Confidence 3444457886 8899999999999999999999999999998765443 24778999999999999999999884333
Q ss_pred eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEeccccccc--CCCCCHHHH
Q 009675 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISS--WGHDFRPSY 181 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~--~g~~fr~~y 181 (529)
+..+.+.. .-+|....++.|.|++-+ .|- ...-.+.+.+||+||+|-+.+ .|+-
T Consensus 367 vgLlTGDv-------------qinPeAsCLIMTTEILRs-----MLYrgadliRDvE~VIFDEVHYiND~eRGvV----- 423 (1248)
T KOG0947|consen 367 VGLLTGDV-------------QINPEASCLIMTTEILRS-----MLYRGADLIRDVEFVIFDEVHYINDVERGVV----- 423 (1248)
T ss_pred cceeecce-------------eeCCCcceEeehHHHHHH-----HHhcccchhhccceEEEeeeeeccccccccc-----
Confidence 43443322 123556777777775422 221 122234589999999999976 3321
Q ss_pred HHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCC-CeEEec-cCCCCcc--EEEEEecCc---------------
Q 009675 182 RKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQN-PLVLKS-SFNRPNL--FYEVRYKDL--------------- 241 (529)
Q Consensus 182 ~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~-~~~~~~-~~~r~nl--~~~v~~~~~--------------- 241 (529)
..++.-.+| .+.+|+||||.++.. .+..|.|-.. ..++.. ...||-- +|-...++.
T Consensus 424 --WEEViIMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~ 499 (1248)
T KOG0947|consen 424 --WEEVIIMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGI 499 (1248)
T ss_pred --ceeeeeeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcc
Confidence 222333445 689999999988763 3455555322 112211 2222210 000000000
Q ss_pred ------------------------------------------------hh---hHHHHHHHHHHhcCCceEEEEeCCccc
Q 009675 242 ------------------------------------------------LD---DAYADLCSVLKANGDTCAIVYCLERTT 270 (529)
Q Consensus 242 ------------------------------------------------~~---~~~~~l~~~l~~~~~~~~IIf~~s~~~ 270 (529)
.. ..+-.++..++...-=|+||||-+++.
T Consensus 500 ~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkr 579 (1248)
T KOG0947|consen 500 KDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKR 579 (1248)
T ss_pred hhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEcccc
Confidence 00 124556666666666689999999999
Q ss_pred HHHHHHHHHhCCC---------------------------------------ceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 271 CDELSAYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 271 ~e~l~~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
|++.++.|....+ .++.+|||+=+--++-+...|..|-++|
T Consensus 580 Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 580 CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 9999999975322 4688999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHcccCCCCCC--ceEEEEEecc--cHHHHHHHHHhc
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLYYGMD--DRRRMEFILSKN 377 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~~p~---------s~~~y~Q~~GRagR~G~~--g~~i~~~~~~--d~~~~~~i~~~~ 377 (529)
|+||..|+||||.| .|.||+-++-+ .+-+|+|++|||||.|-. |++++..... +...++.++--.
T Consensus 660 LFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 660 LFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred EeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 99999999999998 67777766654 788999999999999954 5555554433 556666666543
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=242.74 Aligned_cols=328 Identities=21% Similarity=0.250 Sum_probs=233.7
Q ss_pred hcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC--------------CCeEEEeCcHHHHHHHHHHH
Q 009675 33 HFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~--------------~~~~lVi~P~~~L~~q~~~~ 97 (529)
.+|..+|.+.|..+..+.+.+ .+++++||||+|||-.+++-+|.. ..++++++|..+|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 468889999999999999987 589999999999999999988853 45799999999999999986
Q ss_pred HHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccc--cC-hhhHHHHHhhhccCCccEEEEeccccc
Q 009675 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--AT-PGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (529)
Q Consensus 98 l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v--~t-~~~~~~l~~~~~~~~l~~iViDEaH~~ 170 (529)
+.+ +||.+.-+.+....... ++ ...+++++|||.. .| .+--.... ..++++||||.|.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~-qi--------eeTqVIV~TPEK~DiITRk~gdraY~-----qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKE-QI--------EETQVIVTTPEKWDIITRKSGDRAYE-----QLVRLLIIDEIHLL 449 (1674)
T ss_pred HHhhccccCcEEEEecccccchhh-hh--------hcceeEEeccchhhhhhcccCchhHH-----HHHHHHhhhhhhhc
Confidence 655 78888877766543322 11 1278999999943 22 21111111 23678999999998
Q ss_pred c-cCCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEe--ccCCCCccEEEEEecCch--hh
Q 009675 171 S-SWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLL--DD 244 (529)
Q Consensus 171 ~-~~g~~fr~~y~~-l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~--~~ 244 (529)
- +.|.-......+ ..+....-.+..+++||||+|+- .|+..+|....+..+. .++....+.+++.-.... ..
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 3 345321111111 11111222367899999999976 6778888776654443 355544555554432211 12
Q ss_pred HHHHH-----HHHHHhcCCceEEEEeCCcccHHHHHHHHHh-------------------------------------CC
Q 009675 245 AYADL-----CSVLKANGDTCAIVYCLERTTCDELSAYLSA-------------------------------------GG 282 (529)
Q Consensus 245 ~~~~l-----~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~-------------------------------------~g 282 (529)
+++.+ .+.++..+.+++|||+.+|+++-+.|+.++. ..
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 22222 2345556778999999999999888888772 12
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEE----EeCC------CCCHHHHHHHHcccCCC
Q 009675 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGRD 352 (529)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI----~~~~------p~s~~~y~Q~~GRagR~ 352 (529)
++.+.+|+||+..+|..+.+.|.+|+++|+|+|-.+++|+|.|.-.++| -|+. +-++.+..|+.|||||-
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 4678999999999999999999999999999999999999999766666 3442 34889999999999996
Q ss_pred C--CCceEEEEEecccHHHHHHHHHh
Q 009675 353 Q--LPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 353 G--~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
+ ..|..++....++..+...++++
T Consensus 688 ~~D~~gegiiit~~se~qyyls~mn~ 713 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLSLMNQ 713 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHHhhhh
Confidence 5 45677887777777766665544
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.8e-24 Score=235.37 Aligned_cols=324 Identities=21% Similarity=0.179 Sum_probs=234.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. +++.|.-.--.+..|+ ++.|+||.|||+++.+|++.. +..+.||+|+..|+.+..+.+..
T Consensus 71 vrEaa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345566778875 7788887666666666 999999999999999999864 66699999999999998888766
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccccC--
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~~~-- 173 (529)
+|+.+..+.++.....+...+ ..+|+|+||-.++-.-+...+. ....++.+.++||||||.++-.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 688888887776654433322 3789999998775433333221 1122356889999999998410
Q ss_pred -------C--CCCHHHHH-------------------------------------------HHHHHH-------------
Q 009675 174 -------G--HDFRPSYR-------------------------------------------KLSSLR------------- 188 (529)
Q Consensus 174 -------g--~~fr~~y~-------------------------------------------~l~~l~------------- 188 (529)
| .+-...|. .+..+.
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 0 00000010 011100
Q ss_pred ------------Hh------C------------------------C----------------C-----------------
Q 009675 189 ------------NY------L------------------------P----------------D----------------- 193 (529)
Q Consensus 189 ------------~~------~------------------------~----------------~----------------- 193 (529)
.. | | +
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence 00 0 0 0
Q ss_pred -----CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEE---EecCchhhHHHHHHHHHHh--cCCceEEE
Q 009675 194 -----VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIV 263 (529)
Q Consensus 194 -----~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~II 263 (529)
..+.+||+|+.... ..+.+..++ .++..+.++|...... .+. ....++..+.+.++. ..+.++||
T Consensus 380 fFr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~-t~~~K~~Aii~ei~~~~~~GrpVLV 454 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYL-TADEKYQAIIKDIKDCRERGQPVLV 454 (908)
T ss_pred HHHhhhHhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEe-CHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 02667888876643 345555544 3445566666554322 122 224667777666653 36789999
Q ss_pred EeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC-----------------
Q 009675 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD----------------- 326 (529)
Q Consensus 264 f~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~----------------- 326 (529)
||+|.+.++.++..|...|+++..+||++++.++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 455 ~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~ 532 (908)
T PRK13107 455 GTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAE 532 (908)
T ss_pred EeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhH
Confidence 999999999999999999999999999999999999999999998 9999999999999862
Q ss_pred ---------------c-----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 327 ---------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 327 ---------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
| =+||-...+.|..---|-.|||||.|.||.+..|++.+|.
T Consensus 533 ~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 533 QKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 3799999999999999999999999999999999998885
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=232.65 Aligned_cols=340 Identities=18% Similarity=0.262 Sum_probs=233.1
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHH--HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMEN 93 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i--~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q 93 (529)
.++.....-.. ..+|...++.||.+|+ +.++.+++.+..+||++|||++..+-++. +...++.+.|..+.++.
T Consensus 206 ~~~~k~~~~~~-~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 206 RLPTKVSHLYA-KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQE 284 (1008)
T ss_pred cCchHHHHHHH-HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHH
Confidence 34433343344 4579999999999998 67888999999999999999998876654 47889999999999999
Q ss_pred HHHHHHHcCCceeEecc----CccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009675 94 QVIGLKEKGIAGEFLSS----TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (529)
Q Consensus 94 ~~~~l~~~gi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (529)
....+..+.++..+... ..+.. .......+.++|.|+-.+ ..+.+.+.-....+++|||||-|.
T Consensus 285 k~~~l~~~~~~~G~~ve~y~g~~~p~----------~~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 285 KISALSPFSIDLGFPVEEYAGRFPPE----------KRRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred HHhhhhhhccccCCcchhhcccCCCC----------CcccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeee
Confidence 99888886544433221 11111 011235667777775533 455555555556688999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhHHHHHHHHhcc------CCCeEEeccCCCCccEEEEEecCc
Q 009675 170 ISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL------QNPLVLKSSFNRPNLFYEVRYKDL 241 (529)
Q Consensus 170 ~~~~g~~fr~~y~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~~------~~~~~~~~~~~r~nl~~~v~~~~~ 241 (529)
+.+-|.+.--. .-|.++.-... .+++|+||||.++. .++..+|.- -.|+.+..........|... .
T Consensus 353 i~d~~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r-- 426 (1008)
T KOG0950|consen 353 IGDKGRGAILE-LLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-R-- 426 (1008)
T ss_pred eeccccchHHH-HHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch-h--
Confidence 99877653221 11222222222 35699999999875 344554431 12222222222222233321 0
Q ss_pred hhhHHHHHHH----------------HHHh--cCCceEEEEeCCcccHHHHHHHHHhC----------------------
Q 009675 242 LDDAYADLCS----------------VLKA--NGDTCAIVYCLERTTCDELSAYLSAG---------------------- 281 (529)
Q Consensus 242 ~~~~~~~l~~----------------~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~---------------------- 281 (529)
...+..+.. +..+ ..+.++||||++++.|+.+|..+...
T Consensus 427 -~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~ 505 (1008)
T KOG0950|consen 427 -NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNL 505 (1008)
T ss_pred -hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhH
Confidence 111112211 1111 12445999999999999998655420
Q ss_pred ----------------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC----CCCHHH
Q 009675 282 ----------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEA 341 (529)
Q Consensus 282 ----------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~----p~s~~~ 341 (529)
.+.++++|+|++.++|+.+...|++|.+.|++||+.++.|+|.|..|++|-.-+ ..+.-+
T Consensus 506 lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~ 585 (1008)
T KOG0950|consen 506 LRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLE 585 (1008)
T ss_pred hhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhh
Confidence 135789999999999999999999999999999999999999999888885443 247889
Q ss_pred HHHHHcccCCCC--CCceEEEEEecccHHHHHHHHHhccc
Q 009675 342 FYQESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 342 y~Q~~GRagR~G--~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
|.|++|||||.| ..|.+++++...+.+++..++.....
T Consensus 586 YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 586 YKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred HHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999999998 46889999999999988888876544
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.9e-24 Score=245.42 Aligned_cols=304 Identities=20% Similarity=0.236 Sum_probs=189.7
Q ss_pred CCcHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHH--HHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCcee-
Q 009675 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g-~dvlv~apTGsGKTl~~~--lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~- 106 (529)
.+|++|.+||.++. .| +.++++||||+|||.+.. +-.+. ..+++|+++|+.+|+.|..+.+...+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998876 23 679999999999997643 22222 246899999999999999999998754332
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-HhhhccCCccEEEEeccccccc------CC----C
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS------WG----H 175 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l-~~~~~~~~l~~iViDEaH~~~~------~g----~ 175 (529)
......... ...... .....+++++|...+....+...- ......+.+++|||||||+... .| .
T Consensus 493 ~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 111100000 000111 122367777766544321110000 0112345688999999999531 00 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhcc----------------C---CCeEEeccCCCCccEEEE
Q 009675 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL----------------Q---NPLVLKSSFNRPNLFYEV 236 (529)
Q Consensus 176 ~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~----------------~---~~~~~~~~~~r~nl~~~v 236 (529)
++...|.....+...+ +...|+||||+...... .++. - .|..+...+....+.+..
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 1222244445555544 56789999999754322 1111 0 122222211111111000
Q ss_pred ---------Ee---c-Cch-----------------h----hHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC-
Q 009675 237 ---------RY---K-DLL-----------------D----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG- 281 (529)
Q Consensus 237 ---------~~---~-~~~-----------------~----~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~- 281 (529)
.. . ... . .....+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 00 0 000 0 01122334444445578999999999999999888753
Q ss_pred -----CC---ceEEecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 009675 282 -----GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (529)
Q Consensus 282 -----g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (529)
++ .+..+||+.+ ++..++++|+++.. .|+|+++++.+|+|+|.|..||++..++|...|+|++||+.|-
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 22 4567898875 46789999999887 5899999999999999999999999999999999999999996
Q ss_pred C
Q 009675 353 Q 353 (529)
Q Consensus 353 G 353 (529)
.
T Consensus 801 ~ 801 (1123)
T PRK11448 801 C 801 (1123)
T ss_pred C
Confidence 4
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.9e-24 Score=235.95 Aligned_cols=307 Identities=25% Similarity=0.266 Sum_probs=208.1
Q ss_pred HhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009675 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (529)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (529)
..+||+ +-++|++++..+..|..|+|+||||+|||.+.... ++.++.++++.+|.++|.+|.+..|.......
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv--- 189 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV--- 189 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh---
Confidence 347986 99999999999999999999999999999875543 45568889999999999999999988743322
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecccccccCCCCCHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l 187 (529)
.....+..+-.+-+++..+++.|.|++.+ .+. .......+..||+||+|.+.+.. |. ......
T Consensus 190 ------~~~vGL~TGDv~IN~~A~clvMTTEILRn-----Mlyrg~~~~~~i~~ViFDEvHyi~D~e---RG--~VWEE~ 253 (1041)
T COG4581 190 ------ADMVGLMTGDVSINPDAPCLVMTTEILRN-----MLYRGSESLRDIEWVVFDEVHYIGDRE---RG--VVWEEV 253 (1041)
T ss_pred ------hhhccceecceeeCCCCceEEeeHHHHHH-----HhccCcccccccceEEEEeeeeccccc---cc--hhHHHH
Confidence 00000111112223455666655565432 221 12334568999999999998743 22 223334
Q ss_pred HHhCC-CCCEEEEeecCChhHHHHHHHHhcc--CCCeEEeccCCCCc-cEEEEEec----------Cc-hhh--------
Q 009675 188 RNYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPN-LFYEVRYK----------DL-LDD-------- 244 (529)
Q Consensus 188 ~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r~n-l~~~v~~~----------~~-~~~-------- 244 (529)
.-.+| .+++++||||.++.. .+..+++. ..+..+.....||. +.+.+... .. ...
T Consensus 254 Ii~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 254 IILLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HHhcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 44556 579999999988763 33444442 34444444444442 21111110 00 000
Q ss_pred ----------------------------------HHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh----------
Q 009675 245 ----------------------------------AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA---------- 280 (529)
Q Consensus 245 ----------------------------------~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~---------- 280 (529)
..-.+...+.....-++|+|+-+++.|+..+..+..
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 001133334444556899999999999998876652
Q ss_pred ------------------CCC-------------ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccE
Q 009675 281 ------------------GGI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (529)
Q Consensus 281 ------------------~g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~ 329 (529)
.++ ..+.+|+||=+..|..+.+.|..|-++|++||..+++|||.| .+.
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-art 490 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ART 490 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccc
Confidence 111 246899999999999999999999999999999999999998 666
Q ss_pred EEEeCCCC---------CHHHHHHHHcccCCCCCC--ceEEEE
Q 009675 330 VCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLY 361 (529)
Q Consensus 330 VI~~~~p~---------s~~~y~Q~~GRagR~G~~--g~~i~~ 361 (529)
|+.+.+.+ +...|.|.+|||||.|.. |.+++.
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 66666543 899999999999999954 555555
No 97
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=5.2e-23 Score=224.36 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-CeEEEEeCccc
Q 009675 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (529)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~ 319 (529)
..++..+.+.+.. ..+.|+||-|.|.+..+.++..|.+.|++...+++.-...+-.-+.+ .|. ..|.|||+++|
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeecccc
Confidence 3566666655543 35779999999999999999999999999999998754444333333 343 45999999999
Q ss_pred cccccCC---c-----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 320 MGIDRKD---V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 320 ~GIDip~---v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
||-||.- | =+||....|.|..---|..||+||.|.||.+..|.+.+|.-
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 9999852 2 37999999999999999999999999999999999988743
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=1.2e-22 Score=228.21 Aligned_cols=308 Identities=18% Similarity=0.166 Sum_probs=212.0
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHH--HHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC--ce
Q 009675 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKGI--AG 105 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~--lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi--~~ 105 (529)
+++|+|.+++..+. .|...|+...+|.|||+..+ +..+. ..+.+|||+|. +|+.+|.+.+.++.. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998876 57789999999999998543 22222 14678999997 677889999998643 23
Q ss_pred eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHH
Q 009675 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (529)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~ 185 (529)
..+++ ....+........ ....++++++|.+++... ........+++|||||||.+.... ..+.
T Consensus 248 ~~~~G--~~~eR~~~~~~~~-~~~~~dVvITSYe~l~~e------~~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHG--NPEERAHQREELL-VAGKFDVCVTSFEMAIKE------KTALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeC--CHHHHHHHHHHHh-cccCCCcceecHHHHHHH------HHHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 33332 2222222222211 122477877777765432 222223358899999999986532 3445
Q ss_pred HHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---------------------------------------
Q 009675 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (529)
Q Consensus 186 ~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------------------------- 226 (529)
.....+.....++||||+-.+...++...+..-.|..+...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 55555666668999999988777777776665444322110
Q ss_pred CCCCccEEEEEecCc---h-----------------------------------------------------------hh
Q 009675 227 FNRPNLFYEVRYKDL---L-----------------------------------------------------------DD 244 (529)
Q Consensus 227 ~~r~nl~~~v~~~~~---~-----------------------------------------------------------~~ 244 (529)
...|.....+..... . ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 001111111111000 0 01
Q ss_pred HHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCeEEEEeCccc
Q 009675 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (529)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~a~~ 319 (529)
++..|..++.. ..+.++|||+......+.|..+|...|+....+||+++.++|..+++.|.+. ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11112222221 2466899999999999999999999999999999999999999999999853 345789999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEE
Q 009675 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (529)
Q Consensus 320 ~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~ 362 (529)
.|||+..+++||+||.|+++....|++||+.|.|+...+.+|.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999999999999888776653
No 99
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=3e-24 Score=223.48 Aligned_cols=319 Identities=19% Similarity=0.245 Sum_probs=213.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009675 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (529)
|.|. +-|+|..+|..+-++..|+|.|.|.+|||.++..++ |....++|+-+|..+|-+|.++.|..-.-.+....+
T Consensus 126 YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTG 204 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTG 204 (1041)
T ss_pred CCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeec
Confidence 4553 789999999999999999999999999998865433 344889999999999999999998873333333332
Q ss_pred CccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH-HhhhccCCccEEEEeccccccc--CCCCCHHHHHHHHHH
Q 009675 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSL 187 (529)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l-~~~~~~~~l~~iViDEaH~~~~--~g~~fr~~y~~l~~l 187 (529)
.. +-+|+..-++.|.|++-+ .| ...--.+.+.++|+||+|-|-+ .|--... .+
T Consensus 205 DV-------------TInP~ASCLVMTTEILRs-----MLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE------TI 260 (1041)
T KOG0948|consen 205 DV-------------TINPDASCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEE------TI 260 (1041)
T ss_pred ce-------------eeCCCCceeeeHHHHHHH-----HHhccchHhheeeeEEeeeehhccccccceeeee------eE
Confidence 22 123455566666664422 11 1112234689999999999865 2210000 01
Q ss_pred HHhCCCCCEEEEeecCChhHH-HHHHHHhccCCCeEEeccCCCCcc-EE-----------EEEecC-chhhHHH------
Q 009675 188 RNYLPDVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL-FY-----------EVRYKD-LLDDAYA------ 247 (529)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~r~nl-~~-----------~v~~~~-~~~~~~~------ 247 (529)
.-.-+++..++||||.++..+ .++...++-..+.++-+.+....+ +| .|..+. ..++.+.
T Consensus 261 IllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred EeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 112237889999999987642 334444554555544444332222 22 111111 0111111
Q ss_pred --------------------------------HHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCC------------
Q 009675 248 --------------------------------DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------ 283 (529)
Q Consensus 248 --------------------------------~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~------------ 283 (529)
.+.+.+-.....++|||+-++++||.+|-.+.+..+
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 222223334456899999999999999977765321
Q ss_pred ---------------------------ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 009675 284 ---------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (529)
Q Consensus 284 ---------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p 336 (529)
+++.+|+||=+--++.+.=.|..|-+++|.||..|++|+|.| .+.|++...-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~r 499 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVR 499 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeecc
Confidence 468899999999999999999999999999999999999998 5667766644
Q ss_pred C---------CHHHHHHHHcccCCCCCC--ceEEEEEecc-cHHHHHHHHHhcc
Q 009675 337 K---------SMEAFYQESGRAGRDQLP--SKSLLYYGMD-DRRRMEFILSKNQ 378 (529)
Q Consensus 337 ~---------s~~~y~Q~~GRagR~G~~--g~~i~~~~~~-d~~~~~~i~~~~~ 378 (529)
+ |--+|+|++|||||.|.. |.|++..+.. +....+.+++-..
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSA 553 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCC
Confidence 3 667899999999999954 6666666544 4555666665443
No 100
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.5e-22 Score=221.24 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 009675 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (529)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (529)
..++..+.+.+.. ..+.++||||+|++.++.|+..|.+.|++...+|+ .+.+|+..+..|..+...|+|||+++||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 4677888888854 36789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred ccccC---Ccc-----EEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 321 GIDip---~v~-----~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
|+||+ .|. +||++..|.|...|.|+.||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 554 4599999999999999999999999999999999988754
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.3e-22 Score=195.27 Aligned_cols=295 Identities=19% Similarity=0.254 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHH-HHH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceeEe
Q 009675 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM-CYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL 108 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl-~~~--lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~--gi~~~~~ 108 (529)
+++|.|+.+-++++ +.++.+|+|-||+|||- .|+ -.++..++++.+.+|....+.....+|+.. ++....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999887766 45899999999999994 344 245567999999999999999999999883 3555556
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
++...... -+|-+++|...+.++.+. ++++||||+|..- |..+ ..|....
T Consensus 177 yg~S~~~f-------------------r~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP-----~~~d-~~L~~Av 226 (441)
T COG4098 177 YGDSDSYF-------------------RAPLVVATTHQLLRFKQA-----FDLLIIDEVDAFP-----FSDD-QSLQYAV 226 (441)
T ss_pred ecCCchhc-------------------cccEEEEehHHHHHHHhh-----ccEEEEecccccc-----ccCC-HHHHHHH
Confidence 54433221 134466665544444433 8999999999853 2221 1222221
Q ss_pred --HhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEE-EEEecCchhhHH------HHHHHHHHhc--C
Q 009675 189 --NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--G 257 (529)
Q Consensus 189 --~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~-~v~~~~~~~~~~------~~l~~~l~~~--~ 257 (529)
..-+.-+.|.||||++....+++.. +......+..-+++..+.. .........+++ -.|..+|+.. .
T Consensus 227 ~~ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~ 304 (441)
T COG4098 227 KKARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT 304 (441)
T ss_pred HHhhcccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc
Confidence 2223678999999999887765544 2122223333333322211 011111111122 2466677653 4
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~ 335 (529)
+.+++||+++.+..+++++.|++. + ..++..|+. +..|.+..+.|++|++.+||+|.+++||+..|+|++.|.-.-
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCC
Confidence 578999999999999999999553 3 344677874 567889999999999999999999999999999998764332
Q ss_pred --CCCHHHHHHHHcccCCCC-CCceEEEEEeccc
Q 009675 336 --PKSMEAFYQESGRAGRDQ-LPSKSLLYYGMDD 366 (529)
Q Consensus 336 --p~s~~~y~Q~~GRagR~G-~~g~~i~~~~~~d 366 (529)
-.+-+..+|.+||+||.- .|..-++||-.+-
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 257899999999999964 3444455555443
No 102
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.7e-22 Score=217.76 Aligned_cols=292 Identities=20% Similarity=0.256 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.++.+.+++..|+ .|+..|+-....++.|+.+-++||||.|||..-++.++. .++++++|.||..|+.|.++.+++
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 3455666676787 699999999999999999999999999999655544443 478999999999999999999998
Q ss_pred cCCc-----eeE-eccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCC
Q 009675 101 KGIA-----GEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (529)
Q Consensus 101 ~gi~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g 174 (529)
++.. ... +|+......+....+.+.+|. ++++++ |..|+.+-.......++++|+||.+|.+..-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIlit------Ts~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDILIT------TSQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEEEE------eHHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 6522 222 667778888899999999887 666544 45555444333334569999999999986433
Q ss_pred CC---------CHHH--------------------HHHHHHHHH---------hCCCCCEEEEeecCChhH-H-HHHHHH
Q 009675 175 HD---------FRPS--------------------YRKLSSLRN---------YLPDVPILALTATAAPKV-Q-KDVMES 214 (529)
Q Consensus 175 ~~---------fr~~--------------------y~~l~~l~~---------~~~~~~ii~lSAT~~~~~-~-~~i~~~ 214 (529)
.. |-.. +..+.+..+ ....-.+++.|||..+.- + ..+...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 11 1110 011111111 112345889999988754 2 223334
Q ss_pred hccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCC---cccHHHHHHHHHhCCCceEEecCC
Q 009675 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (529)
Q Consensus 215 l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s---~~~~e~l~~~L~~~g~~~~~~h~~ 291 (529)
|+.... ....-..|+....... .....+.++++..+. .+|||++. ++.+++++++|+..|+++..+|++
T Consensus 300 lgFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 443211 1112223443333222 445666777777766 48999999 899999999999999999999994
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEe----CccccccccCC-ccEEEEeCCCC
Q 009675 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (529)
Q Consensus 292 l~~~~R~~~~~~f~~g~~~VLVaT----~a~~~GIDip~-v~~VI~~~~p~ 337 (529)
- .+.++.|..|+++|||+. .++-||||+|. ++++|+|+.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2 677999999999999985 57889999995 79999999994
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.6e-23 Score=224.52 Aligned_cols=301 Identities=19% Similarity=0.212 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHHHHHHHHHHHHHH-cCCc----eeEec
Q 009675 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLS 109 (529)
Q Consensus 41 ~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~~L~~q~~~~l~~-~gi~----~~~~~ 109 (529)
....+.+.++.+++-+++.+|||+|||. |+|.... ++.+.+.-|.|--+....+++.+ +|.+ +.+..
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 3455667777778888999999999997 6665432 45777788998666666666655 4332 22211
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
. +++.. .+..++-|+|.-++ +..+.....+..+++|||||||.-+-- .||- +.-+..+..
T Consensus 131 R----------fe~~~--s~~Trik~mTdGiL-----lrei~~D~~Ls~ys~vIiDEaHERSl~-tDil--Lgllk~~~~ 190 (845)
T COG1643 131 R----------FESKV--SPRTRIKVMTDGIL-----LREIQNDPLLSGYSVVIIDEAHERSLN-TDIL--LGLLKDLLA 190 (845)
T ss_pred E----------eeccC--CCCceeEEeccHHH-----HHHHhhCcccccCCEEEEcchhhhhHH-HHHH--HHHHHHHHh
Confidence 1 01111 12356655554432 344455566778999999999986531 1221 122344444
Q ss_pred hCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-CCCCccEEEEEe-cCc-hhhHHHHHHHHHHhcCCceEEEEe
Q 009675 190 YLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYC 265 (529)
Q Consensus 190 ~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~IIf~ 265 (529)
..+ +..+|.||||+..+- +.+.++. .|++...+ ...-.++|.-.. .+. ..+.+..........+.+.+|||.
T Consensus 191 ~rr~DLKiIimSATld~~r---fs~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 191 RRRDDLKLIIMSATLDAER---FSAYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred hcCCCceEEEEecccCHHH---HHHHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 555 689999999998763 3344432 33332222 222233331111 111 233344444444445677899999
Q ss_pred CCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC----
Q 009675 266 LERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---- 337 (529)
Q Consensus 266 ~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~---- 337 (529)
+...+.+...+.|.+ ..+.+.++||.|+.+++.++++.-..|+.+|++||++++.+|.||+|++||.-+.-+
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999998 347899999999999999988777778778999999999999999999999877543
Q ss_pred --------------CHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 338 --------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 338 --------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
|-.+.-||.|||||-+ +|.|+-+|+.++..
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 7788999999999997 89999999976654
No 104
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.3e-21 Score=205.51 Aligned_cols=326 Identities=19% Similarity=0.183 Sum_probs=235.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. +++.|.-..-.++.|+ ++.|.||.|||++..+|++.. +..+.|++|+--|+.+..+.+..
T Consensus 67 vREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 446667778886 8899999999999886 889999999999999998754 77899999999999998888765
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~~--- 172 (529)
+|+.+..+.+......+...+. .+|.|+|..-++-.-+...+. .....+.+.+.||||+|.++=
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6899999988888887776664 789999988766554444442 222345688999999999840
Q ss_pred ----------C-----------------CCCC----------------------------------HHHHHHHHH-HHHh
Q 009675 173 ----------W-----------------GHDF----------------------------------RPSYRKLSS-LRNY 190 (529)
Q Consensus 173 ----------~-----------------g~~f----------------------------------r~~y~~l~~-l~~~ 190 (529)
- +.+| +..+..+.. ++..
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 0 0001 000011110 0000
Q ss_pred --C------------------------C----------------C----------------------CCEEEEeecCChh
Q 009675 191 --L------------------------P----------------D----------------------VPILALTATAAPK 206 (529)
Q Consensus 191 --~------------------------~----------------~----------------------~~ii~lSAT~~~~ 206 (529)
+ + + ..+.+||+|+...
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 0 0 0 0277899998654
Q ss_pred HHHHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC
Q 009675 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (529)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~ 281 (529)
...+.+..++. ++..++++|..... ..+. ....++..+.+.+.. ..+.|+||.|.|.+..+.+++.|.+.
T Consensus 376 -~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 376 -GEQLRQFYDLG---VSVIPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred -HHHHHHHhCCc---EEECCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 34556666554 44556667765442 1122 234567777666543 36789999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCC----------c-----cEEEEeCCCCCHHHHHHHH
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD----------V-----RLVCHFNIPKSMEAFYQES 346 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~----------v-----~~VI~~~~p~s~~~y~Q~~ 346 (529)
|++...+++.-...+-.-+.+.=+ .-.|.|||+++|||-||.- | =+||-...|.|..---|-.
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 999999999755444333333222 2359999999999999862 2 3899999999999999999
Q ss_pred cccCCCCCCceEEEEEecccHHH
Q 009675 347 GRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 347 GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
||+||.|.||.+..|.+.+|.-.
T Consensus 529 GRaGRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred cccccCCCCCceeEEEEcchhHH
Confidence 99999999999999999887544
No 105
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.2e-22 Score=211.41 Aligned_cols=298 Identities=19% Similarity=0.241 Sum_probs=209.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcHHHHHHHHHHHHHH-----cCCceeEeccC
Q 009675 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSST 111 (529)
Q Consensus 43 Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~~L~~q~~~~l~~-----~gi~~~~~~~~ 111 (529)
-.+.+..+.+++-++|+++||+|||. |+|-+. ..|.+-+.-|.|--+...+++... +|-.+.+-..
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR- 132 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR- 132 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE-
Confidence 34567777788888999999999997 777654 356677777998766666665544 2322222110
Q ss_pred ccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHH--HHHHHHHHH
Q 009675 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS--YRKLSSLRN 189 (529)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~--y~~l~~l~~ 189 (529)
+++..+ ..+++.|.|..++ ++.+.....+.++++|||||||.-+- .-+ +--|+.+.+
T Consensus 133 ---------Fed~ts--~~TrikymTDG~L-----LRE~l~Dp~LskYsvIIlDEAHERsl-----~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 133 ---------FEDSTS--KDTRIKYMTDGML-----LREILKDPLLSKYSVIILDEAHERSL-----HTDILLGLLKKILK 191 (674)
T ss_pred ---------ecccCC--CceeEEEecchHH-----HHHHhcCCccccccEEEEechhhhhh-----HHHHHHHHHHHHHh
Confidence 111222 2488888887654 34445455567799999999998542 222 123556666
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCC-ccEEEEEe-cCchhhHHHHHHHHHHhcCCceEEEEeCC
Q 009675 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLE 267 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~IIf~~s 267 (529)
..++..+|.+|||+..+.....+. ..|.+...+-.-| .++|.-.+ .+..++.+..+.++....+.+.+|||...
T Consensus 192 ~R~~LklIimSATlda~kfS~yF~----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtG 267 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDAEKFSEYFN----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTG 267 (674)
T ss_pred cCCCceEEEEeeeecHHHHHHHhc----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCC
Confidence 677888999999998765443333 2344333322212 22222221 12234455555666666777789999999
Q ss_pred cccHHHHHHHHHhC----C--C--ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC---
Q 009675 268 RTTCDELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--- 336 (529)
Q Consensus 268 ~~~~e~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p--- 336 (529)
.++.+.+.+.|.+. + . -+.++||.|+.+++.++.+.-..|..+|++||++++..|-|+++++||.-++-
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~ 347 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQK 347 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEE
Confidence 99999999999864 1 1 24789999999999999888788999999999999999999999999976643
Q ss_pred ---------------CCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 337 ---------------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 337 ---------------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
-|..+-.||+|||||.| ||.|+-+|+.++...
T Consensus 348 ~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 348 KYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred eeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 38899999999999997 899999999888754
No 106
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-21 Score=211.59 Aligned_cols=323 Identities=20% Similarity=0.232 Sum_probs=237.8
Q ss_pred CCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 009675 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g----~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (529)
.+.+.|+.+++.+.+. +..++.+.||||||-+|+= ..|..++.+||++|-++|..|..++++. +|.+...++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 6778999999998765 6789999999999999872 4566788999999999999999999988 799999999
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCC-CHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSLR 188 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~-fr~~y~~l~~l~ 188 (529)
|+.+..++...|....+|. .+++++|-.-+.+|- .+|++|||||=|.-+-...+ .|..-+.+..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 278 SGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 9999999999999999887 888888877666653 36899999999997654433 333346788888
Q ss_pred HhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC---CCCccEEEEEecCchhh---HHHHHHHHHHh--cCCce
Q 009675 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDD---AYADLCSVLKA--NGDTC 260 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl~~~v~~~~~~~~---~~~~l~~~l~~--~~~~~ 260 (529)
....++|+|+-|||++-+....... +.-....+..-+ ..|++.+.-........ .-..|++.+++ ..+++
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ 422 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQ 422 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCe
Confidence 9989999999999998776554422 101111222112 23444332222211111 11233444432 24567
Q ss_pred EEEEeCCc------------------------------------------------------------ccHHHHHHHHHh
Q 009675 261 AIVYCLER------------------------------------------------------------TTCDELSAYLSA 280 (529)
Q Consensus 261 ~IIf~~s~------------------------------------------------------------~~~e~l~~~L~~ 280 (529)
+|+|.|.| ..+|++++.|..
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 88888777 234888888877
Q ss_pred C--CCceEEecCCCCHHH--HHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHHHH
Q 009675 281 G--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQ 344 (529)
Q Consensus 281 ~--g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------------s~~~y~Q 344 (529)
. +.++..+.++.+... -+..++.|.+|+.+|||.|++++.|.|.|+|..|...+... ....+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 4 677888888765433 45779999999999999999999999999999988777543 4566789
Q ss_pred HHcccCCCCCCceEEEEEecccHHHHHHHHH
Q 009675 345 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 345 ~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
-+|||||.+++|.+++-.-..|-..++.+..
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 9999999999999888755555444444443
No 107
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=4.8e-22 Score=188.61 Aligned_cols=182 Identities=21% Similarity=0.263 Sum_probs=136.8
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLI 88 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~ 88 (529)
|+++++++.+.+.|.+ +|+.+|+++|.++++.+++|+++++.+|||+|||++|++|++.. +++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5678899999999998 79999999999999999999999999999999999999998742 45899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009675 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (529)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (529)
+|+.|+...+..+ ++....+.++.........+. ...+++++||+.+.. .+. .......++++|
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~-----~l~~~~~~~~~l~~lI 148 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLD-----LLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHH-----HHHcCCCChhhCCEEE
Confidence 9999999888775 556666666655543322221 236788888775422 111 113345689999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHh
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l 215 (529)
+||+|.+.+.+ |...+.. +.+.++ +.+++++|||+++.+...+...+
T Consensus 149 vDE~h~~~~~~--~~~~~~~---~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 149 LDEADRMLDMG--FEDQIRE---ILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred EeChHHhhccC--hHHHHHH---HHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 99999998655 4444333 344444 68899999999988766555544
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=9.6e-22 Score=218.99 Aligned_cols=312 Identities=22% Similarity=0.195 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEcCCCchHHHHHHHHHhcC-------CCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009675 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g---~-dvlv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~ 107 (529)
.++.|..++..++.. . .+++.||||+|||.+.+.+++.. ..+++++.|++++++++.++++..+-....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999888754 4 67889999999999998887642 678999999999999999999873221111
Q ss_pred ----eccCccHHHHHHHHH---HhhcCCCcc-----cEEEeCcccccC----hhhHHHHHhhhccCCccEEEEecccccc
Q 009675 108 ----LSSTQTMQVKTKIYE---DLDSGKPSL-----RLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 108 ----~~~~~~~~~~~~~~~---~~~~~~~~~-----~ll~~tpe~v~t----~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
.++............ ......... .+..+||..+.. +.....+... ..+++|+||+|.+-
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~S~vIlDE~h~~~ 351 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALL----LTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHH----HhhchhhccHHhhc
Confidence 122222111111000 000000111 112222221111 1111111111 24689999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc----CCCCccEEEEEecCchhhH
Q 009675 172 SWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDA 245 (529)
Q Consensus 172 ~~g~~fr~~y~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~~~~~~~~~ 245 (529)
+.. .- ..+..+.... -+.++|++|||+|+...+.+...++.........+ .+.+.+..... ....+.
T Consensus 352 ~~~-~~----~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~ 424 (733)
T COG1203 352 DET-ML----AALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER--VDVEDG 424 (733)
T ss_pred ccc-hH----HHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc--hhhhhh
Confidence 643 11 2222222222 27999999999999998888887765544433222 12222211111 111111
Q ss_pred H-HHHHHHH--HhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh----cCCCeEEEEeCcc
Q 009675 246 Y-ADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAF 318 (529)
Q Consensus 246 ~-~~l~~~l--~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT~a~ 318 (529)
. ..+.... .-..+.+++|.|||+..|.++++.|+..+..+..+||.+...+|.+.++... .++..|+|||++.
T Consensus 425 ~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVI 504 (733)
T COG1203 425 PQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVI 504 (733)
T ss_pred hhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEE
Confidence 0 0111111 1235678999999999999999999998888999999999999998887554 4778899999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCC--CCceEEEEEec
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYGM 364 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G--~~g~~i~~~~~ 364 (529)
+.|+|+ +.+.+|- -+..+.+.+||+||++|.| ..|..+++-..
T Consensus 505 EagvDi-dfd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 505 EAGVDI-DFDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred EEEecc-ccCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 999998 5776663 3566999999999999999 56666666443
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=7.8e-21 Score=207.53 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=112.9
Q ss_pred HHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q 009675 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (529)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GI 322 (529)
.+..|.+.++. ..+.++||||+|++.++.+++.|.+.|+.+..+||++++.+|.++++.|++|+++|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 44455555543 3466899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeC-----CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHH
Q 009675 323 DRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (529)
Q Consensus 323 Dip~v~~VI~~~-----~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i 373 (529)
|+|++++||+++ .|.+.++|+||+|||||. ..|.+++|++..+......+
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 999999999998 799999999999999998 57999999887766544433
No 110
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=2.4e-19 Score=197.22 Aligned_cols=119 Identities=24% Similarity=0.359 Sum_probs=106.4
Q ss_pred HHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccc
Q 009675 246 YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (529)
Q Consensus 246 ~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GID 323 (529)
+..+.+.++. ..+.++||||+|++.++.+++.|...|+++..+||++++.+|..+++.|++|++.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 3444444433 24668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCC-----CCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 324 RKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 324 ip~v~~VI~~~~-----p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
+|++++||+++. |.+.++|+||+||+||. ..|.+++|++..
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 999999999885 78999999999999996 689999999843
No 111
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.4e-19 Score=197.56 Aligned_cols=324 Identities=21% Similarity=0.187 Sum_probs=224.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++..|.. +++.|.-.--.+..|+ ++.|.||.|||+++.+|++. .+..+.|++|+--|+.+..+.+..
T Consensus 71 vrEa~~R~lGm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 71 AREAGKRVMGMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHHHHHHHhCCC-cchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 345566777864 7788887766666666 99999999999999999875 478899999999999999988876
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc----
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS---- 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~---- 171 (529)
+|+.+.++.+.....++...+. .+++|+|.-.++-.-+...+. ....++.+.++||||+|.++
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 5899999988888888777665 789999988764433322221 11234669999999999984
Q ss_pred -------cCCCCCHHHHHHHHHHHHhCC--------------------C-------------------------------
Q 009675 172 -------SWGHDFRPSYRKLSSLRNYLP--------------------D------------------------------- 193 (529)
Q Consensus 172 -------~~g~~fr~~y~~l~~l~~~~~--------------------~------------------------------- 193 (529)
.-...-...|..+..+...+. +
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 110111111211111111000 0
Q ss_pred --------------------------------------------------------------------------------
Q 009675 194 -------------------------------------------------------------------------------- 193 (529)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (529)
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence
Q ss_pred -----CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEE
Q 009675 194 -----VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIV 263 (529)
Q Consensus 194 -----~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~II 263 (529)
..+.+||+|+.... ..+....++ .++..+.++|..... ..+.. ...++..+.+.++. ..+.|+||
T Consensus 380 fFr~Y~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~t-~~eK~~Ai~~ei~~~~~~GrPVLV 454 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEA-FEFRQIYGL---DVVVIPPNKPLARKDFNDLVYLT-AEEKYAAIITDIKECMALGRPVLV 454 (913)
T ss_pred HHHhcchhccCCCCCHHHH-HHHHHHhCC---CEEECCCCCCcccccCCCeEEcC-HHHHHHHHHHHHHHHHhCCCCEEE
Confidence 01455566654332 233333333 233344555554321 11222 24677777766654 36789999
Q ss_pred EeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccccccccC-----------------
Q 009675 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK----------------- 325 (529)
Q Consensus 264 f~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GIDip----------------- 325 (529)
-+.|.+..+.|++.|.+.|++...+++.....+-.-+.+ .| .-.|.|||+++|||-||.
T Consensus 455 GT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~ 531 (913)
T PRK13103 455 GTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTP 531 (913)
T ss_pred EeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhH
Confidence 999999999999999999999888888755444333332 34 345999999999999985
Q ss_pred ---------------Cc-----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 326 ---------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 326 ---------------~v-----~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
.| =+||-...+.|..---|-.||+||.|.||.+..|++.+|.-
T Consensus 532 ~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 532 EQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 12 37999999999999999999999999999999999988743
No 112
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.6e-19 Score=192.42 Aligned_cols=323 Identities=17% Similarity=0.157 Sum_probs=226.2
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|.. +++.|.-.--.+..|+ +..|.||-||||+..+|+.. .+..+-||+..--|+..-.+++..
T Consensus 67 vREA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 446667778875 7788988777777776 89999999999999999875 377788888989998876666554
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc----
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS---- 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~---- 171 (529)
+|+.+....+......+...+. .+|.|+|.--++-..+...+. ....++.+.+.||||+|.++
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 7999998888777777766554 789999887665544333331 22234568899999999974
Q ss_pred -------cCCCCCHHHHHHHHHHHHhC-----------------------------------------------------
Q 009675 172 -------SWGHDFRPSYRKLSSLRNYL----------------------------------------------------- 191 (529)
Q Consensus 172 -------~~g~~fr~~y~~l~~l~~~~----------------------------------------------------- 191 (529)
.-+.+--..|.....+...+
T Consensus 216 rTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 216 KTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred CCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 00000001111111111100
Q ss_pred --------------------------CC--------------------------------------CCEEEEeecCChhH
Q 009675 192 --------------------------PD--------------------------------------VPILALTATAAPKV 207 (529)
Q Consensus 192 --------------------------~~--------------------------------------~~ii~lSAT~~~~~ 207 (529)
|+ ..+.+||+|+...
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te- 374 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTE- 374 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHH-
Confidence 00 1266788887654
Q ss_pred HHHHHHHhccCCCeEEeccCCCCccEEEE---EecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCC
Q 009675 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (529)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~nl~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g 282 (529)
...+.+..++ .++..++++|...... .+. ....++..+.+.++. ..++|+||.|.|.+.++.|++.|.+.|
T Consensus 375 ~~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 375 EQEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred HHHHHHHhCC---CEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 3344454443 3455566777655432 112 224566777666653 367899999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccccccccCCcc--------EEEEeCCCCCHHHHHHHHcccCCCC
Q 009675 283 ISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (529)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GIDip~v~--------~VI~~~~p~s~~~y~Q~~GRagR~G 353 (529)
++...+++.-...+-.-+. ..| ...|.|||+++|||-||.--. +||....|.|..---|..||+||.|
T Consensus 451 i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG 527 (925)
T PRK12903 451 IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG 527 (925)
T ss_pred CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC
Confidence 9999999974433322222 345 356999999999999986332 8999999999999999999999999
Q ss_pred CCceEEEEEecccH
Q 009675 354 LPSKSLLYYGMDDR 367 (529)
Q Consensus 354 ~~g~~i~~~~~~d~ 367 (529)
.||.+..|.+.+|.
T Consensus 528 DpGss~f~lSLeD~ 541 (925)
T PRK12903 528 DVGESRFFISLDDQ 541 (925)
T ss_pred CCCcceEEEecchH
Confidence 99999999998874
No 113
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=4.1e-20 Score=190.75 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=209.0
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCe-EEEeCcHHHHHHHHHHHHHH
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGI-VLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~-~lVi~P~~~L~~q~~~~l~~ 100 (529)
..+++.-..-.-+++-.+.+.++-.++-+++.+.||||||. |+|-... ++. +=+-.|.|--+.....+..+
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 33444333334556777888888888889999999999997 8887643 444 66666988777776666544
Q ss_pred -cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHH
Q 009675 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (529)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~ 179 (529)
+|++...-.+ ++. .+++..+. ...+-|.|..++ +..+..-..+..+++|||||||.-.- | ---
T Consensus 333 EMgvkLG~eVG---YsI---RFEdcTSe--kTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERTL--~-TDI 396 (902)
T KOG0923|consen 333 EMGVKLGHEVG---YSI---RFEDCTSE--KTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERTL--H-TDI 396 (902)
T ss_pred HhCcccccccc---eEE---EeccccCc--ceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhhh--h-hhH
Confidence 5443321111 100 11222222 255666665543 44555555667789999999998432 0 011
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCc--cEEEEEec-CchhhHHHHHHHHHHhc
Q 009675 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN--LFYEVRYK-DLLDDAYADLCSVLKAN 256 (529)
Q Consensus 180 ~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n--l~~~v~~~-~~~~~~~~~l~~~l~~~ 256 (529)
.+..+..+.+..|+..++..|||...+-... ++ .+..++..+-.|-. ++|.-.+. +..+..+..++++....
T Consensus 397 LfgLvKDIar~RpdLKllIsSAT~DAekFS~---fF--DdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tq 471 (902)
T KOG0923|consen 397 LFGLVKDIARFRPDLKLLISSATMDAEKFSA---FF--DDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQ 471 (902)
T ss_pred HHHHHHHHHhhCCcceEEeeccccCHHHHHH---hc--cCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEecc
Confidence 1234566667778999999999998764332 22 23333333322222 23322221 11223333333433445
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----C-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----G-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v 327 (529)
+.+.+|||....++.+...+.|.+ . .+-+.++|+.|+.+.+..+.+.--.|..+|++||++++..|.|++|
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCe
Confidence 667899999998888777777764 2 3568899999999999999888888999999999999999999999
Q ss_pred cEEEEeCCCC------------------CHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 328 RLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 328 ~~VI~~~~p~------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
.+||.-+..+ |..+-.||+|||||.| ||.|+-+|+.-.
T Consensus 552 ~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 552 KYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred EEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 9999766443 7788899999999998 999999998543
No 114
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.83 E-value=3.5e-18 Score=185.90 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=188.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++..|.. +++.|.-..-.+..| -++.|.||.|||+++.+|+.. .+..+.||+++..|+.+-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 446667778886 778888876655554 499999999999999999864 377899999999999988877665
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~~--- 172 (529)
+|+.+..+.++.....+...+. .+|.|+|.--++-.-+.+.+. .....+.+.+.||||+|.++=
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 7999998888888777766654 789999987665544444431 122345688999999999840
Q ss_pred ----------------------------CCCCCH------------HHHHHHHHH---------------------HHhC
Q 009675 173 ----------------------------WGHDFR------------PSYRKLSSL---------------------RNYL 191 (529)
Q Consensus 173 ----------------------------~g~~fr------------~~y~~l~~l---------------------~~~~ 191 (529)
.+-||. ..+..+..+ +..+
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 000110 001111111 1000
Q ss_pred --------------------------CC--------------------------------------CCEEEEeecCChhH
Q 009675 192 --------------------------PD--------------------------------------VPILALTATAAPKV 207 (529)
Q Consensus 192 --------------------------~~--------------------------------------~~ii~lSAT~~~~~ 207 (529)
|+ ..+.+||+|+...
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 00 1277888888653
Q ss_pred HHHHHHHhccCCCeEEeccCCCCccEEEEE--ecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCC
Q 009675 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (529)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (529)
...+.+..++ .++..++++|....... .......++..+.+.+.. ..+.|+||-|.|.+..+.+++.|.+.|+
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 3445555544 34455667776654321 111224566666655443 4678999999999999999999999999
Q ss_pred ceEEecCCCC--HHHHHHHHHHHhcCC-CeEEEEeCccccccccC
Q 009675 284 SCAAYHAGLN--DKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (529)
Q Consensus 284 ~~~~~h~~l~--~~~R~~~~~~f~~g~-~~VLVaT~a~~~GIDip 325 (529)
+...+++.-. ..+-.-+.+ .|. -.|.|||+++|||.||.
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 9999999732 333333333 343 45999999999998864
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=8.7e-20 Score=167.54 Aligned_cols=155 Identities=29% Similarity=0.413 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEecc
Q 009675 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSS 110 (529)
Q Consensus 40 r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~l~~~gi----~~~~~~~ 110 (529)
+|+|.++++.+.+|+++++.||||+|||++|++|++.. ...++|++|+++|+.|+.+.+...+. ....+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999988752 34999999999999999999998643 4566666
Q ss_pred CccHH-HHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 111 TQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
+.... ...... . ...+++++||+.+. ..+.. ......+++|||||+|++..|+ ++..+..+....
T Consensus 81 ~~~~~~~~~~~~----~--~~~~ilv~T~~~l~-----~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~ 147 (169)
T PF00270_consen 81 GQSISEDQREVL----S--NQADILVTTPEQLL-----DLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRL 147 (169)
T ss_dssp TSCHHHHHHHHH----H--TTSSEEEEEHHHHH-----HHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHS
T ss_pred cccccccccccc----c--ccccccccCcchhh-----ccccccccccccceeeccCccccccccc--HHHHHHHHHHHh
Confidence 55543 222222 1 23778888887642 22221 1133458999999999999984 777777776666
Q ss_pred HhCCCCCEEEEeecCChhH
Q 009675 189 NYLPDVPILALTATAAPKV 207 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~ 207 (529)
...++.+++++|||+++.+
T Consensus 148 ~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HTTTTSEEEEEESSSTHHH
T ss_pred cCCCCCcEEEEeeCCChhH
Confidence 6666789999999999544
No 116
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=8.7e-19 Score=183.80 Aligned_cols=311 Identities=19% Similarity=0.198 Sum_probs=225.0
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHH--HHHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009675 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~--lp~l----~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~ 106 (529)
..+|++|.+.++.+. .|-++|+.-..|-|||+--+ +.-+ ...|.-||++|.-.| .+|++.++++.....
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 479999999998876 46788999999999996321 2222 127889999999777 679999999754433
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.+........+.....++.... .++++++|.|++.... .....-.+.++||||||++-... ..|..
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk------~~lk~~~W~ylvIDEaHRiKN~~-------s~L~~ 310 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPG-RFDVCITSYEIAIKDK------SFLKKFNWRYLVIDEAHRIKNEK-------SKLSK 310 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccC-CCceEeehHHHHHhhH------HHHhcCCceEEEechhhhhcchh-------hHHHH
Confidence 3333334466666666555432 6889999998775532 22223358999999999997644 56777
Q ss_pred HHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc----------------------------------------
Q 009675 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---------------------------------------- 226 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---------------------------------------- 226 (529)
+.+.|...-.+++|+|+-.+....+...|+.--|.++...
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 8888887888999999988777777776665444443210
Q ss_pred -C-----------------------------------------------------CCCccEEEEEecCch---------h
Q 009675 227 -F-----------------------------------------------------NRPNLFYEVRYKDLL---------D 243 (529)
Q Consensus 227 -~-----------------------------------------------------~r~nl~~~v~~~~~~---------~ 243 (529)
. +-|.++.-..+.+.. .
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcC
Confidence 0 001111000000000 0
Q ss_pred ---hHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC---CCeEEEEeCc
Q 009675 244 ---DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVA 317 (529)
Q Consensus 244 ---~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~a 317 (529)
-.++.|+..|+. .+.++|||..-....+-|..++.-.|+....+.|.++.++|...++.|... ..-.|++|.|
T Consensus 471 GKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred cceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 112223333333 467899999988889999999988999999999999999999999999864 3446899999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEe
Q 009675 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 318 ~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
.|-|||+...+.||.||-.+++..-+|..-||.|-|+...+.+|--
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 9999999999999999999999999999999999999888777643
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.5e-18 Score=176.13 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=123.8
Q ss_pred CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecC-chhhHHHHHHHHHHhcCCceEEEEeCCcccHH
Q 009675 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (529)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e 272 (529)
.|+|++|||+.+.-.+.-.. .+-.-.+-+++.-.|. .++++.. ..++.+..+....+ .+.+++|-+-|++.+|
T Consensus 387 ~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~--ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAE 460 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPE--IEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAE 460 (663)
T ss_pred CCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCc--eeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHH
Confidence 46999999998764331100 0011111122333333 3344433 22333333333333 4578999999999999
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC-----CCHHHHHHHHc
Q 009675 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQESG 347 (529)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p-----~s~~~y~Q~~G 347 (529)
.|.++|.+.|+++..+|++...-+|.+++.+.+.|.++|||.-+.+-.|+|+|.|.+|..+|.. .|-.+.+|-+|
T Consensus 461 dLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 461 DLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865 48899999999
Q ss_pred ccCCCCCCceEEEEEecc
Q 009675 348 RAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 348 RagR~G~~g~~i~~~~~~ 365 (529)
||+|.- .|.+++|.+.-
T Consensus 541 RAARN~-~GkvIlYAD~i 557 (663)
T COG0556 541 RAARNV-NGKVILYADKI 557 (663)
T ss_pred HHhhcc-CCeEEEEchhh
Confidence 999974 57888776543
No 118
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=187.16 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=196.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCc
Q 009675 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQ 112 (529)
Q Consensus 40 r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~ 112 (529)
...+.+.+..+..++-+++++.||||||. |+|-.. ..|.+-+-.|.|.-+...+.++.. +|..... ..
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~---~V 432 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD---TV 432 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc---cc
Confidence 34667777777788888999999999996 666543 366666777999888887777665 4332211 11
Q ss_pred cHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC
Q 009675 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (529)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~ 192 (529)
++.. .+++..+ +...|-|.|..++...... ...+.+++.||+||||.-+--. --.+-.|..+.....
T Consensus 433 GYsI---RFEdvT~--~~T~IkymTDGiLLrEsL~-----d~~L~kYSviImDEAHERslNt---DilfGllk~~larRr 499 (1042)
T KOG0924|consen 433 GYSI---RFEDVTS--EDTKIKYMTDGILLRESLK-----DRDLDKYSVIIMDEAHERSLNT---DILFGLLKKVLARRR 499 (1042)
T ss_pred ceEE---EeeecCC--CceeEEEeccchHHHHHhh-----hhhhhheeEEEechhhhcccch---HHHHHHHHHHHHhhc
Confidence 1111 0122222 3477777777765443322 2234457899999999865311 112234455555566
Q ss_pred CCCEEEEeecCChhHHHHHHHHhccCCCeE-EeccCCCCccEEEEEecCchhhHHHH----HHHHHHhcCCceEEEEeCC
Q 009675 193 DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLE 267 (529)
Q Consensus 193 ~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~nl~~~v~~~~~~~~~~~~----l~~~l~~~~~~~~IIf~~s 267 (529)
+..+|..|||....- +..++| +.|.. +..-...-++.|. +...++-.+. .+.+....+.+.++||...
T Consensus 500 dlKliVtSATm~a~k---f~nfFg-n~p~f~IpGRTyPV~~~~~---k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 500 DLKLIVTSATMDAQK---FSNFFG-NCPQFTIPGRTYPVEIMYT---KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred cceEEEeeccccHHH---HHHHhC-CCceeeecCCccceEEEec---cCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 899999999998753 344444 22322 2111111112221 1111222222 2222223355678999988
Q ss_pred cccHHHHHHHHH----h------CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC-
Q 009675 268 RTTCDELSAYLS----A------GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP- 336 (529)
Q Consensus 268 ~~~~e~l~~~L~----~------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p- 336 (529)
.++.|-....++ + .++.+.++.+.|+..-+.++...-..|-.++||||++++..+.+|++++||..++.
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 877655554443 3 26789999999999999888887778999999999999999999999999987743
Q ss_pred -----------------CCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 337 -----------------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 337 -----------------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
-|-.+-.||+|||||.| ||.|+-+|+..
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 37788899999999998 99999999864
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=3e-18 Score=189.16 Aligned_cols=294 Identities=16% Similarity=0.142 Sum_probs=176.8
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEcCCCchHHHHHHHHHh-----cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 39 FRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 39 ~r~~Q~~~i~~~l----~------g~dvlv~apTGsGKTl~~~lp~l-----~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
+|++|.+++..+. . .+..++++|||||||++....+. ...+++|||+|+.+|..|+.+.+..++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 7889999998764 2 25789999999999987653322 2367899999999999999999999865
Q ss_pred ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc-CCccEEEEecccccccCCCCCHHHHH
Q 009675 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYR 182 (529)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~~fr~~y~ 182 (529)
.... ...+. ..+...+.. ...+++++|...+... .......... ..-.+||+||||+... | .
T Consensus 319 ~~~~--~~~s~---~~L~~~l~~--~~~~iivtTiQk~~~~--~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-------~ 381 (667)
T TIGR00348 319 DCAE--RIESI---AELKRLLEK--DDGGIIITTIQKFDKK--LKEEEEKFPVDRKEVVVIFDEAHRSQY-G-------E 381 (667)
T ss_pred CCCc--ccCCH---HHHHHHHhC--CCCCEEEEEhHHhhhh--HhhhhhccCCCCCCEEEEEEcCccccc-h-------H
Confidence 3211 11111 112222222 2356777776655431 1111111111 1112899999998532 2 1
Q ss_pred HHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhcc-CCCeEEec--------cCCCCccEEEEEecC------chh----
Q 009675 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKS--------SFNRPNLFYEVRYKD------LLD---- 243 (529)
Q Consensus 183 ~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~-~~~~~~~~--------~~~r~nl~~~v~~~~------~~~---- 243 (529)
-...++..+|+..+++||||+.......-...++. ....+..- ++..| +.|...... ..+
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~-i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK-IDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee-EEEEecchhhccChHHHHHHHH
Confidence 11335578899999999999964311111112211 01111110 11001 111111100 000
Q ss_pred --------------------------------hHHHH----HHHHHHh---cCCceEEEEeCCcccHHHHHHHHHhC---
Q 009675 244 --------------------------------DAYAD----LCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--- 281 (529)
Q Consensus 244 --------------------------------~~~~~----l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~~~--- 281 (529)
..+.. +.+.... ..+.+++|+|.++..|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00111 1111111 12478999999999999999988664
Q ss_pred --CCceEEecCCCCHH---------------------HHHHHHHHHhc-CCCeEEEEeCccccccccCCccEEEEeCCCC
Q 009675 282 --GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (529)
Q Consensus 282 --g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~ 337 (529)
+..+..++++.+.+ ....++++|++ +.++|||+++++..|+|.|.+..++..-.-+
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 34566677654332 22467888976 7899999999999999999999988777555
Q ss_pred CHHHHHHHHcccCC
Q 009675 338 SMEAFYQESGRAGR 351 (529)
Q Consensus 338 s~~~y~Q~~GRagR 351 (529)
+ -.++|.+||+-|
T Consensus 621 ~-h~LlQai~R~nR 633 (667)
T TIGR00348 621 Y-HGLLQAIARTNR 633 (667)
T ss_pred c-cHHHHHHHHhcc
Confidence 5 468999999999
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.81 E-value=5.7e-18 Score=192.50 Aligned_cols=167 Identities=14% Similarity=0.156 Sum_probs=109.3
Q ss_pred CEEEEeecCChh-HHHHHHHHhccCCCeE--E-eccCC-CCccEEEEEe-cC-----chhhHHHHHH----HHHHhcCCc
Q 009675 195 PILALTATAAPK-VQKDVMESLCLQNPLV--L-KSSFN-RPNLFYEVRY-KD-----LLDDAYADLC----SVLKANGDT 259 (529)
Q Consensus 195 ~ii~lSAT~~~~-~~~~i~~~l~~~~~~~--~-~~~~~-r~nl~~~v~~-~~-----~~~~~~~~l~----~~l~~~~~~ 259 (529)
++|++|||++.. ....+.+.+|+..... + .++++ ..+....+.. .. ..+.....+. +++.. .++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCC
Confidence 589999999853 3456678888864332 2 23333 1222221110 00 1112222333 33333 445
Q ss_pred eEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCcc--EEEEe
Q 009675 260 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCHF 333 (529)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~--~VI~~ 333 (529)
++|||++|.+..+.+++.|.. .++. .+..+.. ..|.+++++|++|+..||++|+.|++|||+|+.. .||..
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 799999999999999999976 2333 3334433 5789999999999999999999999999999875 67778
Q ss_pred CCCC------------------------------CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 334 NIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 334 ~~p~------------------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
.+|. .+..+.|.+||.=|......++++++..
T Consensus 753 ~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 753 RLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 8773 1133468999999987655556666544
No 121
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3.2e-19 Score=181.09 Aligned_cols=325 Identities=16% Similarity=0.147 Sum_probs=218.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc-----CC
Q 009675 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-----GI 103 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~-----gi 103 (529)
.-.+++..+|.+++..+..|+.+++.-.|.+||++||++.+.. .....++++|+.++++++.+...-. ..
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~ 361 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKAR 361 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhh
Confidence 4557899999999999999999999999999999999987643 3567899999999999865442210 00
Q ss_pred ceeEe--ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc-CCCCCHHH
Q 009675 104 AGEFL--SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHDFRPS 180 (529)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~-~g~~fr~~ 180 (529)
+.+++ ..+.+..... .+ .. ...+.+|..|..+.|..+-+.+...+..-.+.++++||+|...- .|..-...
T Consensus 362 K~A~V~~~D~~sE~~~~-A~---~R--~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 362 KSAYVEMSDKLSETTKS-AL---KR--IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred hcceeecccCCCchhHH-HH---Hh--cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 11111 1111111111 11 11 23789999998877766555554433333466789999998643 22212233
Q ss_pred HHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEe--ccCCCCccEEEEEec------CchhhHHHHH
Q 009675 181 YRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK------DLLDDAYADL 249 (529)
Q Consensus 181 y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~------~~~~~~~~~l 249 (529)
++.|..+..-|. +.+++-.+||....++. .....++.....+. .++....+.....+. .....++...
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 445555554443 67888888888777654 23444444433322 233333332222211 1112233333
Q ss_pred HHHHHh--cCCceEEEEeCCcccHHHHHHHHHh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 009675 250 CSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (529)
Q Consensus 250 ~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (529)
.+++.+ ..+-++|-||.+|+.||-+-...++ -|- .+..|.||-..++|.++......|+..-+|||++++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 333322 2356799999999999877654443 221 356799999999999999999999999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 320 ~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
.|||+...+.|++.++|.|+.++.|..|||||.++++.++.+....
T Consensus 595 LGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred hccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999999999999999999999999877665543
No 122
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=1.8e-18 Score=175.93 Aligned_cols=282 Identities=19% Similarity=0.231 Sum_probs=191.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccE
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (529)
+-++.++||.||||.-+ +--+......++..|++-|+...++++++.||++..+.+.-.. . ....+ .....
T Consensus 192 kIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~----~---~~~~~-~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERR----F---VLDNG-NPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceee----e---cCCCC-Ccccc
Confidence 45667899999999752 3334446678999999999999999999999999877653211 1 11122 24667
Q ss_pred EEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 009675 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
+-+|-|++.+.. .+++.||||++.|.+-..++.=.-.-|+-.-.. +. | .-.|.+...+.+
T Consensus 263 vScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE---iH---L--CGepsvldlV~~ 322 (700)
T KOG0953|consen 263 VSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE---IH---L--CGEPSVLDLVRK 322 (700)
T ss_pred eEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHHhhhhhh---hh---c--cCCchHHHHHHH
Confidence 888888886644 478999999999976332211000111111111 11 1 124556666666
Q ss_pred HhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCC
Q 009675 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAG 291 (529)
Q Consensus 214 ~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~ 291 (529)
.+.+....+....+.|-+- - ...+.+..-++.. ++.+++ |-|+++.-.+...+.+.|.. ++++.|+
T Consensus 323 i~k~TGd~vev~~YeRl~p-------L---~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 323 ILKMTGDDVEVREYERLSP-------L---VVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred HHhhcCCeeEEEeecccCc-------c---eehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 6655443332222222110 0 0111233334443 344433 44888999999999998776 9999999
Q ss_pred CCHHHHHHHHHHHhc--CCCeEEEEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHcccCCCCC--CceE
Q 009675 292 LNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQL--PSKS 358 (529)
Q Consensus 292 l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~---------s~~~y~Q~~GRagR~G~--~g~~ 358 (529)
|+++.|.+-...|.+ ++.+|||||+|.|||+|+ +++.||.+++-+ +..+..|.+|||||.|. +...
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999997 999999999999999999 899999998653 67889999999999873 2233
Q ss_pred EEEEecccHHHHHHHHHhc
Q 009675 359 LLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 359 i~~~~~~d~~~~~~i~~~~ 377 (529)
++-+..+|...++.+++..
T Consensus 470 vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 470 VTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred EEEeeHhhHHHHHHHHhCC
Confidence 4445567888888888754
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=3.9e-18 Score=182.53 Aligned_cols=321 Identities=20% Similarity=0.224 Sum_probs=193.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHH--HHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCcc
Q 009675 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~--~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (529)
|-.||.+.+..+-.++.++++|||.+|||.+ |.+-.+.+ .+.+|++.|+.+|++|.........-. .....+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~-~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDT-KTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhcc-Cccccchh
Confidence 5579999999999999999999999999965 33444443 789999999999999977766553211 11222222
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeCcccc----cChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 114 MQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~tpe~v----~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
.-. ..-.+..-.....+++++.||.+ .+|.... ..-.+++++|+||+|++.+.-.+ .-...+ -
T Consensus 591 l~g--~ltqEYsinp~nCQVLITvPecleslLlspp~~q-----~~cerIRyiIfDEVH~iG~~ed~-----l~~Eql-l 657 (1330)
T KOG0949|consen 591 LLG--DLTQEYSINPWNCQVLITVPECLESLLLSPPHHQ-----KFCERIRYIIFDEVHLIGNEEDG-----LLWEQL-L 657 (1330)
T ss_pred hHh--hhhHHhcCCchhceEEEEchHHHHHHhcCchhhh-----hhhhcceEEEechhhhccccccc-----hHHHHH-H
Confidence 111 11111122233588999999843 2321111 11235789999999999763322 111111 1
Q ss_pred hCCCCCEEEEeecCChhH-HHHHHHHhcc--C-CC--------------eEEec--------------------------
Q 009675 190 YLPDVPILALTATAAPKV-QKDVMESLCL--Q-NP--------------LVLKS-------------------------- 225 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~-~~~i~~~l~~--~-~~--------------~~~~~-------------------------- 225 (529)
.+-.+|++++|||..+.. ...+.+..+- . +. .++..
T Consensus 658 ~li~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred HhcCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 223689999999976542 1211111110 0 00 00000
Q ss_pred --cCCCCccEEEEEecC--------------ch-----------------------------------------------
Q 009675 226 --SFNRPNLFYEVRYKD--------------LL----------------------------------------------- 242 (529)
Q Consensus 226 --~~~r~nl~~~v~~~~--------------~~----------------------------------------------- 242 (529)
....++......+.. ..
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 000011111000000 00
Q ss_pred -----------------hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh-------------------------
Q 009675 243 -----------------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA------------------------- 280 (529)
Q Consensus 243 -----------------~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~------------------------- 280 (529)
.+.+-.++..|++...-+.|+|.-.|..|+.++..+..
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 01112233334445566889999888888887743321
Q ss_pred ------------CC---------------------------------------------------CceEEecCCCCHHHH
Q 009675 281 ------------GG---------------------------------------------------ISCAAYHAGLNDKAR 297 (529)
Q Consensus 281 ------------~g---------------------------------------------------~~~~~~h~~l~~~~R 297 (529)
.+ -+++.+|+||+...|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 00 046889999999999
Q ss_pred HHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC--CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHH
Q 009675 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (529)
Q Consensus 298 ~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~--~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~ 374 (529)
..+.-.|+.|...||+||..++-|||.| +|.|+..+ +--++-.|-|++|||||.|-.-.+.+.|-.--..++++++
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLl 1055 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLL 1055 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHHHHHHHH
Confidence 9999999999999999999999999998 67776655 3347899999999999999654444444333344444443
No 124
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=6.1e-17 Score=175.98 Aligned_cols=282 Identities=19% Similarity=0.159 Sum_probs=187.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++..|.. +++.|.-.--++..|+ ++.|.||-||||++.+|+... +..+.||++..-|+..-.+.+..
T Consensus 74 vREa~~R~lG~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 345666777875 7788888777776666 999999999999999999864 77899999999999987777655
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---hhccCCccEEEEecccccc----
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS---- 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~~~~~~l~~iViDEaH~~~---- 171 (529)
+|+.+..+.+......+...+. .+|+|+|+--++-.-+...+.. ....+.+.+.||||+|.++
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEA 222 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYA--------CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEA 222 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcC--------CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccC
Confidence 7999998888777777766553 8899999987776655555532 1234668999999999984
Q ss_pred -------cCCCCCHHHHHHHHHHHHhCC---------------CC-----------------------------------
Q 009675 172 -------SWGHDFRPSYRKLSSLRNYLP---------------DV----------------------------------- 194 (529)
Q Consensus 172 -------~~g~~fr~~y~~l~~l~~~~~---------------~~----------------------------------- 194 (529)
.-...-...|.....+...+. ..
T Consensus 223 rTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~ 302 (939)
T PRK12902 223 RTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFN 302 (939)
T ss_pred CCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHH
Confidence 111111112221111111100 00
Q ss_pred -------------------------------------------------------------------------CEEEEee
Q 009675 195 -------------------------------------------------------------------------PILALTA 201 (529)
Q Consensus 195 -------------------------------------------------------------------------~ii~lSA 201 (529)
.+.+||+
T Consensus 303 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTG 382 (939)
T PRK12902 303 ALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTG 382 (939)
T ss_pred HHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCC
Confidence 1456666
Q ss_pred cCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEE--ecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHH
Q 009675 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (529)
Q Consensus 202 T~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~ 277 (529)
|+.... ..+.+..++ .++..+.++|....... .......++..+.+.++. ..+.|+||-|.|.+..+.+++.
T Consensus 383 Ta~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~ 458 (939)
T PRK12902 383 TAKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSAL 458 (939)
T ss_pred CCHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHH
Confidence 654332 233333333 23444556665543211 111224566677665553 3688999999999999999999
Q ss_pred HHhCCCceEEecCC-CC-HHHHHHHHHHHhcCC-CeEEEEeCccccccccC
Q 009675 278 LSAGGISCAAYHAG-LN-DKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (529)
Q Consensus 278 L~~~g~~~~~~h~~-l~-~~~R~~~~~~f~~g~-~~VLVaT~a~~~GIDip 325 (529)
|.+.|++...+++. .. ..+-.-+.+ .|. ..|.|||+++|||-||.
T Consensus 459 L~~~gi~h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 459 LQEQGIPHNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHcCCchheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 99999999999997 22 233222222 343 35999999999998875
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.1e-18 Score=183.40 Aligned_cols=301 Identities=17% Similarity=0.217 Sum_probs=191.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEEeCcHHHHHHHHHHH----HHHcCCceeEe
Q 009675 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIALMENQVIG----LKEKGIAGEFL 108 (529)
Q Consensus 44 ~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lVi~P~~~L~~q~~~~----l~~~gi~~~~~ 108 (529)
+++++++-.+--++|++.||||||. |+|-..- ++.+=|--|.|--+....++ |..+|-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4566777667778899999999996 7776531 44556666887555444443 33333333332
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
.. +++ .-.+..+|.|.|..++ +..+....-+..++.|||||||.-+-...-.-.-..++-.++
T Consensus 340 IR----------fd~--ti~e~T~IkFMTDGVL-----LrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 340 IR----------FDG--TIGEDTSIKFMTDGVL-----LREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred EE----------ecc--ccCCCceeEEecchHH-----HHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 11 011 1123466666665543 445555555667899999999986542211111122333344
Q ss_pred HhCC-------CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEec---CchhhHHHHHHHHHHhcCC
Q 009675 189 NYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGD 258 (529)
Q Consensus 189 ~~~~-------~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~---~~~~~~~~~l~~~l~~~~~ 258 (529)
..+. ...+|.||||+.-.....-...+-+..| ++......-.+.+++... +...+.+...+.+.++.+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 4332 3568999999864322211222333344 444333322333333322 2334566777777788888
Q ss_pred ceEEEEeCCcccHHHHHHHHHhC-----C---------------------------------------------------
Q 009675 259 TCAIVYCLERTTCDELSAYLSAG-----G--------------------------------------------------- 282 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~-----g--------------------------------------------------- 282 (529)
+.+|||+....+++.|.+.|++. +
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 89999999999999999998852 0
Q ss_pred -------------------------------------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 009675 283 -------------------------------------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (529)
Q Consensus 283 -------------------------------------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (529)
+-|.++.+-|+.+.+.++.+.--.|..=++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 0134566667777777777777778888999999999
Q ss_pred cccccCCccEEEEeCCCC------------------CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 320 MGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 320 ~GIDip~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
..+.||+|++||..+.-+ |-.+--||+|||||.| +|+|+-+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999776543 4455579999999998 89999999854
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=8.4e-19 Score=186.91 Aligned_cols=325 Identities=19% Similarity=0.216 Sum_probs=192.4
Q ss_pred CCCCCCCccccCCCCCCChhHHHH-HHHH--HhcCCCCCcHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHH--HH
Q 009675 4 SPLAMQSTSQTQKNKPLHEKEALV-KLLR--WHFGHAQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IP 73 (529)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~l~~~~~-~~l~--~~fg~~~~r~~Q~~~i~~~l----~g-~dvlv~apTGsGKTl~~~--lp 73 (529)
.|.|++.+.+...++-+.-.+... ..+. ..++-..+|.+|..||..+. +| +.++++|.||+|||.++. +-
T Consensus 128 ~pr~~e~f~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~ 207 (875)
T COG4096 128 FPRPVEGFYSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID 207 (875)
T ss_pred CCcchhhccCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH
Confidence 366777776665554443333332 1111 11234579999999997655 45 459999999999995432 33
Q ss_pred HhcC---CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHH-H
Q 009675 74 ALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-K 149 (529)
Q Consensus 74 ~l~~---~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~-~ 149 (529)
.|.+ .+++|+++-+.+|..|....+..+-......+.... ..+..+.++.++|...+....--. .
T Consensus 208 rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~ 276 (875)
T COG4096 208 RLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKED 276 (875)
T ss_pred HHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeec-----------ccCCcceeEEEeehHHHHhhhhcccc
Confidence 3333 678999999999999999888875333222221111 111224677766655443221100 1
Q ss_pred HHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHh-ccC----------
Q 009675 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL-CLQ---------- 218 (529)
Q Consensus 150 l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l-~~~---------- 218 (529)
-......+.+++|||||||+-+ |..-..+...|... .+++|||+......+-...+ +.+
T Consensus 277 ~~~~f~~g~FDlIvIDEaHRgi---------~~~~~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV 346 (875)
T COG4096 277 EYRRFGPGFFDLIVIDEAHRGI---------YSEWSSILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAV 346 (875)
T ss_pred ccccCCCCceeEEEechhhhhH---------HhhhHHHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHh
Confidence 1112234559999999999733 33333444444333 34559998775433333333 111
Q ss_pred --------CCeEEeccCCCCcc---------------------EEEEEe-------cCchhhHHHHHHHHHHh--cC--C
Q 009675 219 --------NPLVLKSSFNRPNL---------------------FYEVRY-------KDLLDDAYADLCSVLKA--NG--D 258 (529)
Q Consensus 219 --------~~~~~~~~~~r~nl---------------------~~~v~~-------~~~~~~~~~~l~~~l~~--~~--~ 258 (529)
.+..+...+.+.-+ .+.... ..........+.++++. .+ -
T Consensus 347 ~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~ 426 (875)
T COG4096 347 EDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEI 426 (875)
T ss_pred hccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCcc
Confidence 01111111111100 010000 00011233445566665 33 4
Q ss_pred ceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhc-CC-CeEEEEeCccccccccCCccEEE
Q 009675 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWIS-SR-KQVVVATVAFGMGIDRKDVRLVC 331 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~-g~-~~VLVaT~a~~~GIDip~v~~VI 331 (529)
+++||||.+..+|+.+.+.|.+. |--+..+.|+-... ...+..|.. .. .+|.|+.+++..|||+|.|..+|
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 68999999999999999999874 23355566654332 334555654 43 45777779999999999999999
Q ss_pred EeCCCCCHHHHHHHHcccCC
Q 009675 332 HFNIPKSMEAFYQESGRAGR 351 (529)
Q Consensus 332 ~~~~p~s~~~y~Q~~GRagR 351 (529)
.+....|..-|.|++||+-|
T Consensus 505 F~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred ehhhhhhHHHHHHHhcCccc
Confidence 99999999999999999999
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=7.1e-18 Score=147.75 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhc--CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccc
Q 009675 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (529)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (529)
.+...+.+++... .++++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|.++...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666777777665 37789999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 322 IDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
+|+|++++||+++.|.+...|.|++||+||.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 128
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.77 E-value=8.5e-18 Score=184.33 Aligned_cols=308 Identities=18% Similarity=0.192 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEec
Q 009675 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (529)
....+.+++.++.+++-+++.+.||+|||. |+|.... ...+++-.|.|--+-...++... .+....
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--- 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--- 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---
Confidence 456788888888888999999999999996 6665432 34566667987655555555544 221111
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
...+...+. +. ......+++|+|.-+ ++..+........+..+|+||+|.-+.. .||--.+ +..+..
T Consensus 249 ~~VGYqvrl---~~--~~s~~t~L~fcTtGv-----LLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi~--lk~lL~ 315 (924)
T KOG0920|consen 249 EEVGYQVRL---ES--KRSRETRLLFCTTGV-----LLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLIL--LKDLLP 315 (924)
T ss_pred CeeeEEEee---ec--ccCCceeEEEecHHH-----HHHHhccCcccccCceeeeeeEEEccCC-cccHHHH--HHHHhh
Confidence 111111110 00 011226676666443 3445555555667899999999997654 3454333 344566
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCc-------------------cEE-------------EEE
Q 009675 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-------------------LFY-------------EVR 237 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n-------------------l~~-------------~v~ 237 (529)
..|+.++|+||||...+... .+++ ..|++...++.-|- -.+ .+.
T Consensus 316 ~~p~LkvILMSAT~dae~fs---~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFS---DYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hCCCceEEEeeeecchHHHH---HHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 66899999999999855433 2332 23332221111110 000 000
Q ss_pred ecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 238 YKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
..+...+.+..+..++-.. ..+.+|||.+.-.+...+.+.|... .+-+.++|+.|+..++..+.+.--.|..
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 1111123444555555433 4678999999999999999999752 2567899999999999999998889999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCC------------------CHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
+||+||+.++.+|-|+||-+||..+.-+ |...-.||.|||||. .+|.|+-+|+......
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 9999999999999999999999766432 556778999999999 5899999998765443
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=4.6e-18 Score=135.47 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.9
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCC
Q 009675 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (529)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G 353 (529)
++|+..|+.+..+||++++++|..+++.|.+++..|||||+++++|||+|++++||+++.|.|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=5.8e-16 Score=174.03 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=109.8
Q ss_pred CEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEec--C-----chhhHHHHHHHHHHh--cCCceEEEEe
Q 009675 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--D-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (529)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~--~-----~~~~~~~~l~~~l~~--~~~~~~IIf~ 265 (529)
++|++|||++-.-..++...+|+.........+...+-...+... + ..+...+.+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999621112367888886443322222211111111110 1 112222233333211 3456799999
Q ss_pred CCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC--CccEEEEeCCCC------
Q 009675 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (529)
Q Consensus 266 ~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip--~v~~VI~~~~p~------ 337 (529)
+|.+..+.+++.|....+.+ ...|.-. .+.+++++|++++-.||++|..|.+|||+| +...||...+|-
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665544 4434222 356689999998889999999999999997 356677778773
Q ss_pred ------------------------CHHHHHHHHcccCCCCCCceEEEEEecc--cHHHHHHHHHhcc
Q 009675 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (529)
Q Consensus 338 ------------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~--d~~~~~~i~~~~~ 378 (529)
-+-.+.|.+||.=|......+++++++. ....-+.+++...
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 1233579999999987544456665544 2233344554443
No 131
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=1.9e-16 Score=167.17 Aligned_cols=311 Identities=17% Similarity=0.129 Sum_probs=210.2
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEcCCCchHHH--HHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHHcCC--c
Q 009675 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGI--A 104 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~----g~dvlv~apTGsGKTl--~~~lp~l~~----~~~~lVi~P~~~L~~q~~~~l~~~gi--~ 104 (529)
..+.|+|++++..+.+ +.-.|+--..|-|||. +..|.+|.. .+.+|||||. .++.||+++++.... .
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 3688999999998763 4567888899999995 333555554 3789999997 788999999999654 4
Q ss_pred eeEeccCccHHHHHHH-----HHH--hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCC
Q 009675 105 GEFLSSTQTMQVKTKI-----YED--LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~f 177 (529)
+.++++..+....... +.. .+...+...++++|.+.+. ..........++++|+||.|.+-...
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r------~~~d~l~~~~W~y~ILDEGH~IrNpn--- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR------IQGDDLLGILWDYVILDEGHRIRNPN--- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc------ccCcccccccccEEEecCcccccCCc---
Confidence 5556655543111000 000 0111122334444444332 22233334458999999999987644
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCe------------------------------------
Q 009675 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL------------------------------------ 221 (529)
Q Consensus 178 r~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~------------------------------------ 221 (529)
.++...+..++.+..|.||+|+-.+....+...+....|-
T Consensus 354 ----s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 354 ----SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred ----cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 5666677788888999999997665444444332221110
Q ss_pred ------------------------------EEe--------------------------------------ccCCCCccE
Q 009675 222 ------------------------------VLK--------------------------------------SSFNRPNLF 233 (529)
Q Consensus 222 ------------------------------~~~--------------------------------------~~~~r~nl~ 233 (529)
++- ...+-|.+.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 000 000111111
Q ss_pred EEE---E-ec-C-----chhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHH-hCCCceEEecCCCCHHHHHHH
Q 009675 234 YEV---R-YK-D-----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSV 300 (529)
Q Consensus 234 ~~v---~-~~-~-----~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~-~~g~~~~~~h~~l~~~~R~~~ 300 (529)
..- . .. + ....++..+..+|+. ..+.++|+|..++...+-|...|. ..|+....+.|..+...|..+
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHH
Confidence 100 0 00 0 001233444444432 235589999999999999999999 689999999999999999999
Q ss_pred HHHHhcCCC-e-EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 301 LDDWISSRK-Q-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 301 ~~~f~~g~~-~-VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
.++|.+++. . .|++|.+.|-|+|+-..+-||.||+.+++.+-.|..-||-|.|+...+++|
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999997653 3 578899999999999999999999999999999999999999998877776
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.73 E-value=2.7e-16 Score=172.49 Aligned_cols=314 Identities=20% Similarity=0.230 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHH---HHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCce
Q 009675 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQ---IPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAG 105 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl---~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~ 105 (529)
.++|.+|.+.++.++ .++++|+.-..|-|||. +|+ .-.....|..|||+|+-.+ ..|.+.+.. ....+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhce
Confidence 579999999998876 57899999999999994 333 3333347889999999665 445555544 45566
Q ss_pred eEeccCccHHHHHHHHHHhhcC---CCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEecccccccCCCCCHHHH
Q 009675 106 EFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (529)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y 181 (529)
..+++..........++-.... .-.++++.+|.|++... .++. .-.+.+++|||||++-.-.
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~-------~i~w~~~~vDeahrLkN~~------- 513 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS-------KIPWRYLLVDEAHRLKNDE------- 513 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc-------cCCcceeeecHHhhcCchH-------
Confidence 6666665544444444433333 12478888888876543 2222 2247889999999987522
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-----------------------------------
Q 009675 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----------------------------------- 226 (529)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----------------------------------- 226 (529)
..|-.....+..-..+++|+|+-.+..+.+...++...|..+...
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 233334455555668999999988877777777655443322100
Q ss_pred ---CCCCccEEEEEecCchh--------------------------------------------------hHH------H
Q 009675 227 ---FNRPNLFYEVRYKDLLD--------------------------------------------------DAY------A 247 (529)
Q Consensus 227 ---~~r~nl~~~v~~~~~~~--------------------------------------------------~~~------~ 247 (529)
+..+.-.+.|...+... ..+ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 00001111111000000 000 0
Q ss_pred HHHHHHHh---------------cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCC
Q 009675 248 DLCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRK 309 (529)
Q Consensus 248 ~l~~~l~~---------------~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~ 309 (529)
.|..+|+. .++.++|||..-....+-|+++|...|++...+.|++..+.|.+.++.|.. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 11122211 256789999999999999999999999999999999999999999999995 566
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE--Eecc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~--~~~~ 365 (529)
-.|.+|-|.|-|||+...+.||.||-.+++.+-+|...||.|-|+...+-+| ++..
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 7899999999999999999999999999999999999999999998876554 4444
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.70 E-value=1.2e-15 Score=164.99 Aligned_cols=311 Identities=19% Similarity=0.112 Sum_probs=191.1
Q ss_pred CCcHHHHHHHHHHHc---C-------CCEEEEcCCCchHHHHHH--HHHhcC---C-----CeEEEeCcHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMCYQ--IPALAK---P-----GIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~---g-------~dvlv~apTGsGKTl~~~--lp~l~~---~-----~~~lVi~P~~~L~~q~~~~ 97 (529)
.+||+|++.+.-+-+ | .-+++.-..|+|||+-.. +..+.+ . .+.|||+|. +|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999988753 2 235666689999996422 333333 3 679999997 888999999
Q ss_pred HHHcCCc----eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC
Q 009675 98 LKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 98 l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~ 173 (529)
+.+.-+. ...+.+.... .+....+--.-.--.+.+|..+.+..-............++++|+||.|..-.-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-----~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-----SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccccccceeeeecccch-----hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 9884332 2222222221 111110000001122344444544443333344444567999999999997542
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc------CC-------------------
Q 009675 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------- 228 (529)
Q Consensus 174 g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~------------------- 228 (529)
. ..+-...........|+||+|+-.+...++.+.|++-+|..+... +.
T Consensus 392 ~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 392 D-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred h-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 2 334344444555567999999998888888888777666544210 00
Q ss_pred -------------------------CCccEEEEEecCc---hhhHHHHH-------------------------------
Q 009675 229 -------------------------RPNLFYEVRYKDL---LDDAYADL------------------------------- 249 (529)
Q Consensus 229 -------------------------r~nl~~~v~~~~~---~~~~~~~l------------------------------- 249 (529)
.|..+..+..... ..+.+..+
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 0111111111000 00111111
Q ss_pred ---------------------------------------HHHH---HhcCCceEEEEeCCcccHHH-HHHHHHhCCCceE
Q 009675 250 ---------------------------------------CSVL---KANGDTCAIVYCLERTTCDE-LSAYLSAGGISCA 286 (529)
Q Consensus 250 ---------------------------------------~~~l---~~~~~~~~IIf~~s~~~~e~-l~~~L~~~g~~~~ 286 (529)
..++ ++....+ .||+.......+ +.+..+-.|+.+.
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~-~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVK-SVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceE-EEEeccHHHHHHHHHHHHhhcCceEE
Confidence 1111 1111122 223333333333 3344444699999
Q ss_pred EecCCCCHHHHHHHHHHHhcCC---CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEE
Q 009675 287 AYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~---~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~ 362 (529)
.+||.|+.++|+.+.+.|.+-. .-.|.+|-|.|.||++-+...||.+|.++++..-.|.++||-|+|+...|++|-
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999999999632 335667899999999999999999999999999999999999999999998873
No 134
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.7e-15 Score=163.73 Aligned_cols=123 Identities=23% Similarity=0.226 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 009675 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (529)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (529)
..++..+.+.+.. ..++|+||-|.|.+..|.|++.|...|++...+++.....+-+-+.+.=..| .|-|||+++||
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCC
Confidence 4567777666654 3678999999999999999999999999988888876655544444433333 59999999999
Q ss_pred ccccC--------CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 321 GIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 321 GIDip--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
|-||. +==+||-...+.|..---|..||+||.|.||.+..|++.+|.
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99987 235899999999999999999999999999999999998874
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=7e-15 Score=147.71 Aligned_cols=322 Identities=16% Similarity=0.195 Sum_probs=197.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHH-HHHHHHcCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEeC
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVS 85 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~-~i~~~l~g~dvlv~apTGsGKTl~~~lp~l------~~~~~~lVi~ 85 (529)
..+.|.....++.-.+.|++.--. |-..|++ -++.+.+++-+++++.||+|||. |+|-. ...+.+....
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~L--Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQ 98 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRREL--PVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQ 98 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcC--chHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecC
Confidence 345555666777777778764222 2233444 55556667788899999999995 44432 2235566677
Q ss_pred cHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEE
Q 009675 86 PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (529)
Q Consensus 86 P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (529)
|.+--+.+...+... +.+... ...+...+ +++..+ +.+-+-|+|..+ .+.........+.++.||+
T Consensus 99 prrvaamsva~RVadEMDv~lG---~EVGysIr---fEdC~~--~~T~Lky~tDgm-----LlrEams~p~l~~y~viiL 165 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADEMDVTLG---EEVGYSIR---FEDCTS--PNTLLKYCTDGM-----LLREAMSDPLLGRYGVIIL 165 (699)
T ss_pred chHHHHHHHHHHHHHHhccccc---hhcccccc---ccccCC--hhHHHHHhcchH-----HHHHHhhCcccccccEEEe
Confidence 988777776666544 221111 11111000 111111 112222333332 2333444555677999999
Q ss_pred ecccccccCCCCCHHH--HHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEe-cCc
Q 009675 165 DEAHCISSWGHDFRPS--YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDL 241 (529)
Q Consensus 165 DEaH~~~~~g~~fr~~--y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~-~~~ 241 (529)
||||.-+- ..+ +-.|+.+....|+..+|.+|||+...-.+ ....+.|.+-..+...-.++|.-.. .+.
T Consensus 166 DeahERtl-----ATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq----~yf~n~Pll~vpg~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERTL-----ATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ----RYFGNAPLLAVPGTHPVEIFYTPEPERDY 236 (699)
T ss_pred chhhhhhH-----HHHHHHHHHHHHHhhCCCceEEEeecccchHHHH----HHhCCCCeeecCCCCceEEEecCCCChhH
Confidence 99998532 111 23466677777999999999999766322 2233344443333222233332222 233
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC---------CCceEEecCCCCHHHHHHHHHHHh---cC--
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI---SS-- 307 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~---~g-- 307 (529)
.+..+..++++......+.++||....++.+...+.+... .+.+.++| ++++..+.+.-. +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 4455566666666566778999999998888777777632 35678888 333333333222 12
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCC------------------CCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 308 ~~~VLVaT~a~~~GIDip~v~~VI~~~~p------------------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
..+|+|+|+.++..+-+++|.+||.-++. -|..+-.||.|||||. .||.|+-+|+.+
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 35799999999999999999999977643 3888899999999998 599999999854
No 136
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.68 E-value=3.2e-15 Score=157.85 Aligned_cols=322 Identities=20% Similarity=0.199 Sum_probs=226.1
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHH--HHHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009675 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~--~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~~gi~~ 105 (529)
|+. +.++|.-.++++. .+-+.|+.-..|-|||.-. .+..|. ..|.-|||+|.-.| ..|.+++.+++...
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 443 8899999998865 3456788889999999421 122222 27789999999655 78999999998777
Q ss_pred eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHH
Q 009675 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (529)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~ 185 (529)
.+.....+..++..+...+......++++++|..++++..--..+. ...++.++|+||+|.+-..+. .-|..|-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsfl---k~~~~n~viyDEgHmLKN~~S---eRy~~LM 548 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFL---KNQKFNYVIYDEGHMLKNRTS---ERYKHLM 548 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHH---HhccccEEEecchhhhhccch---HHHHHhc
Confidence 7776667778888888889888889999999999887654222222 233689999999999987653 2244443
Q ss_pred HHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC--------------------------------------
Q 009675 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------------------------------------- 227 (529)
Q Consensus 186 ~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-------------------------------------- 227 (529)
.+ +.-..++||+|+-.+....++..|..--|.++..+.
T Consensus 549 ~I----~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SI----NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cc----cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 32 345679999998766555554444332222211000
Q ss_pred ----------CCCccEEEEEec--------------------------C----c---h------------------h---
Q 009675 228 ----------NRPNLFYEVRYK--------------------------D----L---L------------------D--- 243 (529)
Q Consensus 228 ----------~r~nl~~~v~~~--------------------------~----~---~------------------~--- 243 (529)
..|.-...+.+. + . . +
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 000000000000 0 0 0 0
Q ss_pred --------------------------------------------------------hHHHHHHHHHHh--cCCceEEEEe
Q 009675 244 --------------------------------------------------------DAYADLCSVLKA--NGDTCAIVYC 265 (529)
Q Consensus 244 --------------------------------------------------------~~~~~l~~~l~~--~~~~~~IIf~ 265 (529)
.++..|..+|.+ ..+.+++||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 111222222221 1457899999
Q ss_pred CCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-Ce-EEEEeCccccccccCCccEEEEeCCCCCHHHHH
Q 009675 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (529)
Q Consensus 266 ~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~ 343 (529)
.-....+-|...|...|+....+.|...-.+|+.++..|..++ +. .|.+|-|.|.|||+-..++||.+|+.-++-.-.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999999999999999999999999999999998654 33 588999999999999999999999999999999
Q ss_pred HHHcccCCCCCCceEEE--EEecccHH
Q 009675 344 QESGRAGRDQLPSKSLL--YYGMDDRR 368 (529)
Q Consensus 344 Q~~GRagR~G~~g~~i~--~~~~~d~~ 368 (529)
|.--||.|.|+...+.+ +++.+-.+
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 99999999997665544 45555443
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=4.4e-14 Score=161.63 Aligned_cols=184 Identities=14% Similarity=0.153 Sum_probs=114.9
Q ss_pred CEEEEeecCChh-HHHHHHHHhccCCC----eEEeccCCCCccEEEEEecC-------chhhHHHHHHHHHH---hcCCc
Q 009675 195 PILALTATAAPK-VQKDVMESLCLQNP----LVLKSSFNRPNLFYEVRYKD-------LLDDAYADLCSVLK---ANGDT 259 (529)
Q Consensus 195 ~ii~lSAT~~~~-~~~~i~~~l~~~~~----~~~~~~~~r~nl~~~v~~~~-------~~~~~~~~l~~~l~---~~~~~ 259 (529)
++|++|||++.. ....+...+|+... ..+.++|+-.+-..-+.+.+ ..+.....+.+.+. ...++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 478999998753 23455677888532 23334444322111111111 01222233333332 22445
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCc--cEEEEeCC
Q 009675 260 CAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--RLVCHFNI 335 (529)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v--~~VI~~~~ 335 (529)
.++|+++|.+..+.+++.|..... ....+.-|++...|.+++++|++++-.||++|..|.+|||+|+- +.||...+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 799999999999999999976432 12223334544568899999999888999999999999999974 88998887
Q ss_pred CC------------------------------CHHHHHHHHcccCCCCCCceEEEEEecc--cHHHHHHHHHhcc
Q 009675 336 PK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (529)
Q Consensus 336 p~------------------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~--d~~~~~~i~~~~~ 378 (529)
|- .+-.+.|.+||.=|......++++++.. ...+-+.+++...
T Consensus 834 PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 834 PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 74 1223468899999987655556665544 2333344555443
No 138
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=9.7e-14 Score=151.74 Aligned_cols=288 Identities=15% Similarity=0.039 Sum_probs=190.3
Q ss_pred EcCCCchHHHHHHHH---HhcCCCeEEEeCcHHHHHHHHHHHHHH-cC-CceeEeccCccHHHHHHHHHHhhcCCCcccE
Q 009675 59 LMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (529)
Q Consensus 59 ~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (529)
.+.+|||||-+|+-. ++..++.+||++|.++|..|..++|++ +| .....+++..+..++...|..+..|. .+|
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~I 243 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--ARV 243 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--CcE
Confidence 344699999998743 356688999999999999999999998 55 67889999999999999999988876 788
Q ss_pred EEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCC-CCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~-~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
+++|---+..|- .++++|||||=|.-+-... ..+..-+.+..++....+.|+|+-|||++-+......
T Consensus 244 ViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 244 VVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred EEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 888877666653 4689999999998654221 1233346788888888899999999999877655332
Q ss_pred HH-hccC--CCeEEeccCCCCccEEEEEec-----C-------chhhHHHHHHHHHHhcCCceEEEEeCCcc--------
Q 009675 213 ES-LCLQ--NPLVLKSSFNRPNLFYEVRYK-----D-------LLDDAYADLCSVLKANGDTCAIVYCLERT-------- 269 (529)
Q Consensus 213 ~~-l~~~--~~~~~~~~~~r~nl~~~v~~~-----~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~-------- 269 (529)
.- +... ..... ....|.+...-... + .....++.+.+.+++ + ++|||.|.+-
T Consensus 313 ~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~--g-qvll~lnRrGyap~l~C~ 387 (665)
T PRK14873 313 SGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH--G-PVLVQVPRRGYVPSLACA 387 (665)
T ss_pred cCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc--C-cEEEEecCCCCCCeeEhh
Confidence 21 1100 00011 11223332221110 0 111233444444442 4 7888888772
Q ss_pred ---------------------------------------------------cHHHHHHHHHhC--CCceEEecCCCCHHH
Q 009675 270 ---------------------------------------------------TCDELSAYLSAG--GISCAAYHAGLNDKA 296 (529)
Q Consensus 270 ---------------------------------------------------~~e~l~~~L~~~--g~~~~~~h~~l~~~~ 296 (529)
.++++++.|.+. +.++....+
T Consensus 388 ~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~------ 461 (665)
T PRK14873 388 RCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGG------ 461 (665)
T ss_pred hCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEECh------
Confidence 225666666553 334443322
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC------------CHHHHHHHHcccCCCCCCceEEEEEec
Q 009675 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (529)
Q Consensus 297 R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~------------s~~~y~Q~~GRagR~G~~g~~i~~~~~ 364 (529)
..+++.|. ++.+|||+|..+..=+. +++..|+..|... ....+.|-+||+||.+++|..++.+.+
T Consensus 462 -d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 462 -DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred -HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 24778885 59999999994333232 4788888777432 345568899999999999999988755
Q ss_pred ccHHHHHHHH
Q 009675 365 DDRRRMEFIL 374 (529)
Q Consensus 365 ~d~~~~~~i~ 374 (529)
+. ..++.+.
T Consensus 539 ~~-~~~~~l~ 547 (665)
T PRK14873 539 SL-PTVQALI 547 (665)
T ss_pred CC-HHHHHHH
Confidence 54 3344443
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.62 E-value=1.4e-14 Score=135.26 Aligned_cols=167 Identities=32% Similarity=0.407 Sum_probs=114.4
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHHcCC----
Q 009675 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGI---- 103 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~l~~~gi---- 103 (529)
+++.+++++|.+++..++.+ +.+++.+|||+|||.++..+++.. ...++|++|+.+++.|+...+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 999999999999999887776643 36799999999999999999988652
Q ss_pred -ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEecccccccCCCCCHHHH
Q 009675 104 -AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (529)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDEaH~~~~~g~~fr~~y 181 (529)
....+.+..... .+.....+ ...++++|++.+... +... .....++++||||||.+..+. +...
T Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~--~~~v~~~t~~~l~~~-----~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~- 149 (201)
T smart00487 84 KVVGLYGGDSKRE----QLRKLESG--KTDILVTTPGRLLDL-----LENDLLELSNVDLVILDEAHRLLDGG--FGDQ- 149 (201)
T ss_pred EEEEEeCCcchHH----HHHHHhcC--CCCEEEeChHHHHHH-----HHcCCcCHhHCCEEEEECHHHHhcCC--cHHH-
Confidence 222333322211 22222222 137777776644321 1111 234458899999999998642 3433
Q ss_pred HHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhc
Q 009675 182 RKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 182 ~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
+..+.... +..+++++|||++............
T Consensus 150 --~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 150 --LEKLLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred --HHHHHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 33343433 5788999999999776665444443
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=4.2e-15 Score=118.78 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 009675 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (529)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (529)
.+++.|+..++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.++.|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009675 353 Q 353 (529)
Q Consensus 353 G 353 (529)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 141
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=1.4e-14 Score=146.03 Aligned_cols=290 Identities=18% Similarity=0.182 Sum_probs=184.9
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc-CCceeEeccCc
Q 009675 37 AQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQ 112 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g---~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~-gi~~~~~~~~~ 112 (529)
..+||+|+.++..+..+ +..+++.|.|+|||++-.-++..-.+..||++..---+.||..++... .+....+..-+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 47899999999988743 688999999999999866666656788999998877778888877763 22221111111
Q ss_pred cHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH----HHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~----~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
+.. + ........+++.|..+++..+.. ..+.+......++++++||+|.+-..- ||... . +.
T Consensus 381 sd~-K-------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVl---s-iv 446 (776)
T KOG1123|consen 381 SDA-K-------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVL---S-IV 446 (776)
T ss_pred ccc-c-------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHH---H-HH
Confidence 100 0 01122366899999888765422 233445556679999999999987632 55332 2 22
Q ss_pred HhCCCCCEEEEeecCChhHHHHHHHHhc-cCCCeEEecc-------------------------C---------CCCccE
Q 009675 189 NYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSS-------------------------F---------NRPNLF 233 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~-------------------------~---------~r~nl~ 233 (529)
.. .--++||||+-.+..+ +.-|+ +-.|..+... | .+.-+.
T Consensus 447 ~a---HcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QA---HCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HH---HhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 22 2257999997654321 11111 1111111100 0 011111
Q ss_pred EEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh-cCCCeEE
Q 009675 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRKQVV 312 (529)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~VL 312 (529)
|...+. .-...+.|.++..+ .+.++|||..+.-.....|-.|.+ -++.|..++.+|.++++.|+ +..++.|
T Consensus 522 yvMNP~--KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 522 YVMNPN--KFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eecCcc--hhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 111111 11233445555444 567899998765555555544433 46789999999999999999 5678899
Q ss_pred EEeCccccccccCCccEEEEeCCC-CCHHHHHHHHcccCCCC
Q 009675 313 VATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQ 353 (529)
Q Consensus 313 VaT~a~~~GIDip~v~~VI~~~~p-~s~~~y~Q~~GRagR~G 353 (529)
.-+-+....||+|..+++|..+.- .|-.+-.||.||.-|+.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999999999999977643 47888899999988864
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.58 E-value=9e-13 Score=142.51 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=108.2
Q ss_pred CEEEEeecCChhH------HHHHHHHhccCCCe-EEeccCC----CCc--cEEEEE------ecCc--------------
Q 009675 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVR------YKDL-------------- 241 (529)
Q Consensus 195 ~ii~lSAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----r~n--l~~~v~------~~~~-------------- 241 (529)
++|+.|||+.-.- ...+.+.+|+.... .+.++|+ +.. +.|... +.+.
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 4899999988643 57788899986442 2345555 333 222110 0111
Q ss_pred --hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc----CCCeEEEEe
Q 009675 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (529)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT 315 (529)
.......+..++...++ .++|.+.|.+..+.+++.|...---...+.|..+ .+..++++|+. |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~G-~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQG-GTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcCC-CEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 01133455566655444 6899999999999999999764212344555432 45668888886 478999999
Q ss_pred Ccccccccc--------C--CccEEEEeCCCC-------------------------CHHHHHHHHcccCCCCCC--ceE
Q 009675 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (529)
Q Consensus 316 ~a~~~GIDi--------p--~v~~VI~~~~p~-------------------------s~~~y~Q~~GRagR~G~~--g~~ 358 (529)
..|..|||+ | .++.||...+|- ..-.+.|-+||.=|.... ...
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 488999988883 123346778888887654 334
Q ss_pred EEEEecc
Q 009675 359 LLYYGMD 365 (529)
Q Consensus 359 i~~~~~~ 365 (529)
+.++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4444433
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.56 E-value=1.7e-13 Score=138.17 Aligned_cols=307 Identities=15% Similarity=0.148 Sum_probs=190.1
Q ss_pred CCCcHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHH-HHHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCcc
Q 009675 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ-IPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l-~g~dvlv~apTGsGKTl~~~-lp~l~-~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (529)
+.+-|+|++.+...+ +|..+++....|-|||+-++ +.... .....|||+|- +|-..|.++|.++-.....++--..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 457899999887665 57788999999999998654 33333 36778899997 5667888888884211111110000
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeCcc-cccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC
Q 009675 114 MQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (529)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~tpe-~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~ 192 (529)
.+ ....-+-..++ .+.+...+..+........+.++|+||.|.+-.--. .+...+.....
T Consensus 276 ~~-------------D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt------kr~Ka~~dllk 336 (689)
T KOG1000|consen 276 SS-------------DPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKT------KRTKAATDLLK 336 (689)
T ss_pred cc-------------CCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccch------hhhhhhhhHHH
Confidence 00 00101111111 233444556666666667799999999999855211 11111111111
Q ss_pred -CCCEEEEeecCChhHHHHHHHHh--------------ccCCC----e--E--EeccC----------------------
Q 009675 193 -DVPILALTATAAPKVQKDVMESL--------------CLQNP----L--V--LKSSF---------------------- 227 (529)
Q Consensus 193 -~~~ii~lSAT~~~~~~~~i~~~l--------------~~~~~----~--~--~~~~~---------------------- 227 (529)
-..+|+||+|+.-.--.++...+ +...+ . . +....
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23589999996421100000000 00000 0 0 00000
Q ss_pred --CCCccEEEEEec--Cch-----------------------------------hhHHHHHHHHHHh------cCCceEE
Q 009675 228 --NRPNLFYEVRYK--DLL-----------------------------------DDAYADLCSVLKA------NGDTCAI 262 (529)
Q Consensus 228 --~r~nl~~~v~~~--~~~-----------------------------------~~~~~~l~~~l~~------~~~~~~I 262 (529)
..|.-.-.|... ... ..+...+.++|.. .++.+.+
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 001101111110 000 0122223344433 3567899
Q ss_pred EEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc-CCCeE-EEEeCccccccccCCccEEEEeCCCCCHH
Q 009675 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~V-LVaT~a~~~GIDip~v~~VI~~~~p~s~~ 340 (529)
|||......+.+...+.+.++....+.|..++.+|....+.|.. .++.| +++-.++++|+++...+.||+..+++++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 99999999999999999999999999999999999999999994 55665 45567899999999999999999999999
Q ss_pred HHHHHHcccCCCCCCceEEEEEe
Q 009675 341 AFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 341 ~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
-.+|.--|+.|-|+.+.+.++|-
T Consensus 577 vLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred eEEechhhhhhccccceeeEEEE
Confidence 99999999999998887655543
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.55 E-value=9e-13 Score=146.90 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=107.1
Q ss_pred CEEEEeecCChhH-HHHHHHHhccCCCe--E-EeccCCCCccEEEEEec---C-----chhhHHHHHHHHHHhcCCceEE
Q 009675 195 PILALTATAAPKV-QKDVMESLCLQNPL--V-LKSSFNRPNLFYEVRYK---D-----LLDDAYADLCSVLKANGDTCAI 262 (529)
Q Consensus 195 ~ii~lSAT~~~~~-~~~i~~~l~~~~~~--~-~~~~~~r~nl~~~v~~~---~-----~~~~~~~~l~~~l~~~~~~~~I 262 (529)
.+|++|||+.+.. ...+...++..... . +.+.++........... . ...+....+.++++..++ .++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 4899999988753 33455555554433 1 12222322211111111 1 112233445555555555 799
Q ss_pred EEeCCcccHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccccccCCc--cEEEEeCCCC-
Q 009675 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDV--RLVCHFNIPK- 337 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GIDip~v--~~VI~~~~p~- 337 (529)
||++|.+..+.+++.+...... ....+|..+ +...++.|.++.- -++|+|..|++|||+|+= +.||..++|-
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999887652 345555444 4478888886544 899999999999999974 8899888874
Q ss_pred -----------------------------CHHHHHHHHcccCCCCCCceEEEEEec
Q 009675 338 -----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (529)
Q Consensus 338 -----------------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~ 364 (529)
.+....|.+||+=|.-.....+++++.
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 345568999999996554444455544
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.54 E-value=5.4e-15 Score=137.25 Aligned_cols=156 Identities=26% Similarity=0.266 Sum_probs=92.2
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009675 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~-------g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (529)
+||++|.+++..+.+ .+.+++.||||+|||.++...+......+++++|+.+|+.|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999884 5889999999999999877444333339999999999999999999654332221110
Q ss_pred Ccc-----------HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHH-------HHhhhccCCccEEEEeccccccc
Q 009675 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~-------l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
... ...... ..........++++.+...+........ ..........++||+||||+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDIS--DKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEE--HHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccc--cccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 000 000000 0011122345666665554432211100 00111233578999999999754
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 173 ~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
. ..|..+ .. ++...+++||||+.
T Consensus 161 ~-----~~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 D-----SSYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp H-----HHHHHH---HH-SSCCEEEEEESS-S
T ss_pred H-----HHHHHH---Hc-CCCCeEEEEEeCcc
Confidence 1 113333 23 77788999999986
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.53 E-value=7.6e-12 Score=139.12 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=104.0
Q ss_pred EEEEeecCChh-HHHHHHHHhccCC---Ce--EEeccCCCCccEEEEEec---C--chhhHH----HHHHHHHHhcCCce
Q 009675 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRYK---D--LLDDAY----ADLCSVLKANGDTC 260 (529)
Q Consensus 196 ii~lSAT~~~~-~~~~i~~~l~~~~---~~--~~~~~~~r~nl~~~v~~~---~--~~~~~~----~~l~~~l~~~~~~~ 260 (529)
+|++|||+++. ....+.+.+|+.. .. .+.++|+-.+-..-+.+. . ...... ..+.+++. .++ .
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~g-g 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KHK-G 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cCC-C
Confidence 78999998863 3456677888863 22 233444332221111111 1 111222 33444444 333 4
Q ss_pred EEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhc----CCCeEEEEeCccccccccCC--ccEEEEe
Q 009675 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (529)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT~a~~~GIDip~--v~~VI~~ 333 (529)
++|+++|.+..+.+++.|... +.. ...+|. ..|..+++.|++ |+-.||++|..|.+|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999999753 333 344553 356778877774 67789999999999999997 7899999
Q ss_pred CCCC----CH--------------------------HHHHHHHcccCCCCCCceEEEEEecc
Q 009675 334 NIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 334 ~~p~----s~--------------------------~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
.+|- ++ -.+.|.+||.=|.......+++.++.
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9873 11 12358889999976544455555544
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=7.1e-12 Score=140.21 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=60.4
Q ss_pred HhcCCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc----CC--CeEEEeCcHHHHHHHHHHHHHHc
Q 009675 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~lp~l~----~~--~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
-.|.|..+||.|.+.+..+. .|+++++.+|||+|||++.+.|+|. .+ .++++.+.|.+=..|.+++|++.
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 35899989999999887654 5789999999999999998888875 23 68999999999999999999883
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=4.4e-13 Score=147.45 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=201.3
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC--CCeEEEeCcHHHHHHHHHHHHHH-----cCCceeEec
Q 009675 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~--~~~~lVi~P~~~L~~q~~~~l~~-----~gi~~~~~~ 109 (529)
.+.|.|.++++.+.+. .+++|.+|+|+|||.|+-+..+.. .++++++.|.-+.+..+...+.+ .|.....+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 3478999999998765 568899999999999998888865 67899999999888766665554 344555555
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHH---HHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK---LSS 186 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~---l~~ 186 (529)
+..+.+.+-. . .-++++.|||.. ..+. ....++++|.||.|.+... +-+.|.. +..
T Consensus 1223 ge~s~~lkl~-----~----~~~vii~tpe~~------d~lq---~iQ~v~l~i~d~lh~igg~---~g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1223 GETSLDLKLL-----Q----KGQVIISTPEQW------DLLQ---SIQQVDLFIVDELHLIGGV---YGAVYEVICSMRY 1281 (1674)
T ss_pred CccccchHHh-----h----hcceEEechhHH------HHHh---hhhhcceEeeehhhhhccc---CCceEEEEeeHHH
Confidence 5444433211 1 146777777743 2232 3446899999999998742 1222211 111
Q ss_pred HHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCC-Cc-cEEEEEec--Cchhh--------HHHHHHHHH
Q 009675 187 LRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-PN-LFYEVRYK--DLLDD--------AYADLCSVL 253 (529)
Q Consensus 187 l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~n-l~~~v~~~--~~~~~--------~~~~l~~~l 253 (529)
+-..+ .++.++++|...+.. +|+ ++.....++..++.+ |+ +..++... ..... .+..+....
T Consensus 1282 ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 22222 267889999887654 233 666655566554433 32 22222222 11111 222232222
Q ss_pred HhcCCceEEEEeCCcccHHHHHHHHHh----------------------CCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 254 KANGDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 254 ~~~~~~~~IIf~~s~~~~e~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
. .+.++|||+++|+.|..++..|-. ..++...=|-|++..+..-+...|..|.++|
T Consensus 1357 ~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1357 G--NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred c--CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 2 456899999999999877743321 0112222289999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeC-----------CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFN-----------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~-----------~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
+|...- .+|+-.. ...||..+ .+.++.+..|+.|+|.| .|.|+++....+....++++.+.-
T Consensus 1435 ~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~l 1507 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPL 1507 (1674)
T ss_pred EEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcC
Confidence 999876 7777653 34444322 45679999999999988 588999999998888887766543
No 149
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.46 E-value=2.6e-12 Score=141.29 Aligned_cols=306 Identities=15% Similarity=0.146 Sum_probs=196.6
Q ss_pred CCcHHHHHHHHHHH--c--CCCEEEEcCCCchHHHHHH-HHH---hcC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQ-IPA---LAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l--~--g~dvlv~apTGsGKTl~~~-lp~---l~~--------~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
.+|.+|++.++.+. + +-+.|++-..|-||||-.+ +-+ ..+ ....|||||. .|...|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 67889999998864 2 3588999999999997422 111 111 2348999997 7889999999987
Q ss_pred CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHH
Q 009675 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (529)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y 181 (529)
......+........+....... ...++++++.+++-+ ..... ....+.++|+||-|-+-. .=
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~Rn-----D~d~l-~~~~wNYcVLDEGHVikN-------~k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRN-----DVDYL-IKIDWNYCVLDEGHVIKN-------SK 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHH-----HHHHH-HhcccceEEecCcceecc-------hH
Confidence 54433333333444444433322 235677776665532 22222 123488999999998754 22
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCC-----------------------------------------
Q 009675 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP----------------------------------------- 220 (529)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~----------------------------------------- 220 (529)
.++....+.+..-..+.||+|+-.+...+++..+..--|
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 455555555555668899999876544444332221100
Q ss_pred ---------------------eEEe------------------------------cc---C------------------C
Q 009675 221 ---------------------LVLK------------------------------SS---F------------------N 228 (529)
Q Consensus 221 ---------------------~~~~------------------------------~~---~------------------~ 228 (529)
.++. .+ . +
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 0000 00 0 0
Q ss_pred CCccEEEEEecC------------------chhhHHHHHHHHHHhc----------------CCceEEEEeCCcccHHHH
Q 009675 229 RPNLFYEVRYKD------------------LLDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (529)
Q Consensus 229 r~nl~~~v~~~~------------------~~~~~~~~l~~~l~~~----------------~~~~~IIf~~s~~~~e~l 274 (529)
-|-+...-...+ ...-++..|.++|... .+.+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000000000000 0001223344444321 245799999999999999
Q ss_pred HHHHHhCC---CceEEecCCCCHHHHHHHHHHHhcC-CCeEEE-EeCccccccccCCccEEEEeCCCCCHHHHHHHHccc
Q 009675 275 SAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISS-RKQVVV-ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (529)
Q Consensus 275 ~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLV-aT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRa 349 (529)
.+-|-+.- +....+.|..++.+|.++.++|.++ .++||+ +|-+.|-|+|+-+.+.||.++-.+++..-+|..-||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 98887642 2334789999999999999999998 888765 568999999999999999999999999999999999
Q ss_pred CCCCCCceEEEE
Q 009675 350 GRDQLPSKSLLY 361 (529)
Q Consensus 350 gR~G~~g~~i~~ 361 (529)
.|-|+...+-+|
T Consensus 1437 HRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVY 1448 (1549)
T ss_pred HhhcCceeeeee
Confidence 999987766554
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=145.99 Aligned_cols=301 Identities=21% Similarity=0.259 Sum_probs=172.2
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEeCcHHHHHHHHHHHHHH---cCCceeE
Q 009675 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEF 107 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g----~dvlv~apTGsGKTl~~~-l-p~l~~~~~~lVi~P~~~L~~q~~~~l~~---~gi~~~~ 107 (529)
.+|||+|++||++..+| ...=+.|.+|+|||.+.+ + -++. ..++|+++|+++|..|..+.+.. +.+.+..
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 57999999999999876 345678899999998865 2 2333 48899999999999999888765 3333333
Q ss_pred eccCccHH--------------------HHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCccEEEEe
Q 009675 108 LSSTQTMQ--------------------VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAID 165 (529)
Q Consensus 108 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l~~iViD 165 (529)
+++..... ..-..+.... .....-++++|...+ ..+.. ......+++||.|
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~-k~~~~~vvFsTYQSl------~~i~eAQe~G~~~fDliicD 311 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQ-KANGLTVVFSTYQSL------PRIKEAQEAGLDEFDLIICD 311 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhh-ccCCcEEEEEcccch------HHHHHHHHcCCCCccEEEec
Confidence 33322111 1111111111 222344555555433 22222 2234569999999
Q ss_pred ccccccc---CCCCCHHHH------HHHHHHHHhCCCCCEEEEeecCChh---HHHHHH----HHhccCCCeEEeccCCC
Q 009675 166 EAHCISS---WGHDFRPSY------RKLSSLRNYLPDVPILALTATAAPK---VQKDVM----ESLCLQNPLVLKSSFNR 229 (529)
Q Consensus 166 EaH~~~~---~g~~fr~~y------~~l~~l~~~~~~~~ii~lSAT~~~~---~~~~i~----~~l~~~~~~~~~~~~~r 229 (529)
|||+-.. -|.| ...+ ..++. ...+.||||+.-- ...... ....|.+...+...+.|
T Consensus 312 EAHRTtGa~~a~dd-~saFt~vHs~~niKa-------~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 312 EAHRTTGATLAGDD-KSAFTRVHSDQNIKA-------AKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred chhccccceecccC-cccceeecCcchhHH-------HHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 9999742 1111 0000 11222 2356788885321 100000 00011111111111221
Q ss_pred Ccc----------EEEEEec-----------------CchhhHHHHHHH-------HHHhc--------------CCceE
Q 009675 230 PNL----------FYEVRYK-----------------DLLDDAYADLCS-------VLKAN--------------GDTCA 261 (529)
Q Consensus 230 ~nl----------~~~v~~~-----------------~~~~~~~~~l~~-------~l~~~--------------~~~~~ 261 (529)
-+. -|.|... ....-.++.... +.++. +.+++
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 110 1111110 000001111111 11111 22467
Q ss_pred EEEeCCcccHHHHHHHHHh-------------CC--CceEEecCCCCHHHHHHHHH---HHhcCCCeEEEEeCccccccc
Q 009675 262 IVYCLERTTCDELSAYLSA-------------GG--ISCAAYHAGLNDKARSSVLD---DWISSRKQVVVATVAFGMGID 323 (529)
Q Consensus 262 IIf~~s~~~~e~l~~~L~~-------------~g--~~~~~~h~~l~~~~R~~~~~---~f~~g~~~VLVaT~a~~~GID 323 (529)
|-||.+.++...+++.+.. .+ +.+....|.|...+|.+.++ .|...+++||---..+++|||
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 8999999888888766542 23 34566678899999965543 234567888887888999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHcccCCCC
Q 009675 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (529)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Q~~GRagR~G 353 (529)
+|..+.||+++.-+|+-..+|.+||+.|..
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999964
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.42 E-value=1.5e-12 Score=141.08 Aligned_cols=321 Identities=20% Similarity=0.199 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHHc---C-CCEEEEcCCCchHHHH------HHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009675 38 QFRDKQLDAIQAVLS---G-RDCFCLMPTGGGKSMC------YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~---g-~dvlv~apTGsGKTl~------~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~ 107 (529)
.++++|...++++.+ + -+.++.-.+|-|||.. |++-.....|.-+||+|+-.|. .|...+.........
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~-NW~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV-NWSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC-Cchhhccccccceee
Confidence 789999999988763 3 3677888999999953 3333344578899999998885 467777766666666
Q ss_pred eccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
+....+...+..+...+..++ ++||.+|.|.+..+. ++..+ .+.++||||.|+|..-- .+|..
T Consensus 473 i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~lLsKI-------~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKALLSKI-------SWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHHHHhcc-------CCcceeecccccccchh-------hHHHH
Confidence 667777888888888888866 999999999887642 22222 47789999999987521 45554
Q ss_pred HHH-hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc------CCC------------------------------
Q 009675 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNR------------------------------ 229 (529)
Q Consensus 187 l~~-~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~r------------------------------ 229 (529)
... .+.....+++|+|+-.+....++..|+.--|.++.+. |+.
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 444 4444557889999877666655555554433333110 000
Q ss_pred ---------------------------------------------------------------------CccEEEE----
Q 009675 230 ---------------------------------------------------------------------PNLFYEV---- 236 (529)
Q Consensus 230 ---------------------------------------------------------------------~nl~~~v---- 236 (529)
|.++..+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 0000000
Q ss_pred Ee--cC-------chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC
Q 009675 237 RY--KD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (529)
Q Consensus 237 ~~--~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (529)
.. .. .....++.++..|+. .+..++.|+.-..-...+..+|.-.++....+.|....++|...++.|..-
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLka-tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKA-TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHh-cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 00 00 000111122222232 356789999888888888899988899999999999999999999999964
Q ss_pred C---CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHh
Q 009675 308 R---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 308 ~---~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
. ...|.+|.+.|.|+|....+.||.||-.+++....|+--||.|.|+...+-++....-....+.|++.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 3 34688999999999999999999999999999999999999999999888888776655555556554
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.39 E-value=4.2e-11 Score=130.54 Aligned_cols=324 Identities=20% Similarity=0.184 Sum_probs=205.0
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHHHHHHHHH---
Q 009675 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE--- 100 (529)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q~~~~l~~--- 100 (529)
.++-++.+|...+ ..|. +-.+.-...-+.-|.||-||||+..+|+... +..+.||+..--||.--.+++..
T Consensus 70 REa~~Rvlg~~~~-dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 70 REASKRVLGMRHF-DVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred hHHHHHhcCCChh-hHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 3455566676533 3444 4444444555999999999999999998754 67788889888898855555443
Q ss_pred -cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc-----
Q 009675 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS----- 171 (529)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~----- 171 (529)
+|..+.+..+.....++...+. .++.|+|.--++-.-....+. .-.-+..+.+.||||++.+.
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEAR 218 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEAR 218 (822)
T ss_pred HcCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccc
Confidence 7999999999998888888776 788999987776654333331 11223458899999999873
Q ss_pred -----cCCCCCH-HHHHHHHHHHHhCCC---------CCEEEEee-----------------------------------
Q 009675 172 -----SWGHDFR-PSYRKLSSLRNYLPD---------VPILALTA----------------------------------- 201 (529)
Q Consensus 172 -----~~g~~fr-~~y~~l~~l~~~~~~---------~~ii~lSA----------------------------------- 201 (529)
.|....+ ..|..+..+...+.. ...+.||-
T Consensus 219 tPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~ 298 (822)
T COG0653 219 TPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHI 298 (822)
T ss_pred cceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHH
Confidence 3422221 335555444433221 11222221
Q ss_pred --------------------------------------------------------------------------cCChhH
Q 009675 202 --------------------------------------------------------------------------TAAPKV 207 (529)
Q Consensus 202 --------------------------------------------------------------------------T~~~~~ 207 (529)
|+..+.
T Consensus 299 l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~ 378 (822)
T COG0653 299 LFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEE 378 (822)
T ss_pred HhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhh
Confidence 111110
Q ss_pred HHHHHHHhccCCCeEEeccCCCCccEEEEEe--cCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCC
Q 009675 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (529)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~ 283 (529)
.+ +.... .-.++..+.++|.+.....- -.....++..+++.++. ..++|+||-+.+.+..|.+.+.|.+.|+
T Consensus 379 ~E-F~~iY---~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i 454 (822)
T COG0653 379 EE-FDVIY---GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGI 454 (822)
T ss_pred hh-hhhcc---CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCC
Confidence 00 00000 01111222333333211100 01124566666666654 4678999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCcc-----------EEEEeCCCCCHHHHHHHHcccCCC
Q 009675 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRD 352 (529)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~-----------~VI~~~~p~s~~~y~Q~~GRagR~ 352 (529)
+-..+.+.-...+-+.+...-..| -|-|||+++|+|-|+.--. +||-..--.|-.---|--||+||.
T Consensus 455 ~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQ 532 (822)
T COG0653 455 PHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQ 532 (822)
T ss_pred CceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccC
Confidence 988888876655544444433333 4789999999999975222 455555555666667999999999
Q ss_pred CCCceEEEEEecccH
Q 009675 353 QLPSKSLLYYGMDDR 367 (529)
Q Consensus 353 G~~g~~i~~~~~~d~ 367 (529)
|.||.+..|++-+|.
T Consensus 533 GDpG~S~F~lSleD~ 547 (822)
T COG0653 533 GDPGSSRFYLSLEDD 547 (822)
T ss_pred CCcchhhhhhhhHHH
Confidence 999999999887764
No 153
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.36 E-value=4.1e-12 Score=111.60 Aligned_cols=135 Identities=30% Similarity=0.360 Sum_probs=88.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC---CceeEeccCccHHHHHHHHHHhh
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~~~ 125 (529)
+.+++.+|||+|||..+...+.. ..++++|++|+..|+.|+.+.+.... +............... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887765543 35889999999999999998888754 5555555544333322 111
Q ss_pred cCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 126 SGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 126 ~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
.....++++|++.+.. .+.. ......++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~-----~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLD-----ELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHH-----HHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1246777777775432 1111 1123468899999999987632 11111 12233445678899999996
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.25 E-value=5.9e-10 Score=123.92 Aligned_cols=91 Identities=25% Similarity=0.263 Sum_probs=71.7
Q ss_pred EEEEeCCcccHHHHHHHHHhC----C--CceEEecCCCCHHHHHHHHHHH---------------------h-c----CC
Q 009675 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW---------------------I-S----SR 308 (529)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f---------------------~-~----g~ 308 (529)
++|-..+++.+-.+++.|-.. + +....||+...-..|..+.+.. . + +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 688889999999999888754 2 3477899999877777665442 1 1 36
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC
Q 009675 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (529)
Q Consensus 309 ~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~ 354 (529)
..|+|+|++.+.|+|+ |.+.+| .-|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6799999999999998 566554 447889999999999999874
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.15 E-value=2.2e-09 Score=112.69 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=94.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccccccCCccEEEEeCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNI 335 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GIDip~v~~VI~~~~ 335 (529)
.+.++++|..-.+..+-+.++|...|+....+.|.....+|..+..+|...++ -.|++|.+.|.|||+-..+.||+|+-
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 45678999988889999999999999999999999999999999999997554 46889999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 336 p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
.+++..-.|...||.|-|+...+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999987765554
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.13 E-value=4.4e-09 Score=115.46 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=108.0
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC--eEEEEeCccccccccCCccEEEEeC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~--~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
.+.++|||+.-.+..+-|..+|+-+|+-...+.|..+-++|+..+++|..+.. -.|.+|-..|.|||+-+.+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 45689999999999999999999999999999999999999999999997653 3578899999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
-.+++..-.|.--|+.|-|+...+.+|--.++...-..|+++...
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanq 1399 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQ 1399 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhH
Confidence 999999999999999999988888887666666655677776643
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.11 E-value=3.3e-09 Score=111.66 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh--cCCCeEE-EEeCccccccccCCccEEEEeCCCCCHHHHHHHHc
Q 009675 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (529)
Q Consensus 271 ~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~VL-VaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~G 347 (529)
..-+...|++.|.....+||....++|..+++.|. +|..+|+ ++-.+.|-|+|+-+.+|+|..|+-+++.---|..-
T Consensus 759 Lniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcD 838 (901)
T KOG4439|consen 759 LNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACD 838 (901)
T ss_pred HHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHH
Confidence 34455667778999999999999999999999998 4556665 55588899999999999999999999999999999
Q ss_pred ccCCCCCCceEEEE
Q 009675 348 RAGRDQLPSKSLLY 361 (529)
Q Consensus 348 RagR~G~~g~~i~~ 361 (529)
|.-|.|+...++++
T Consensus 839 RIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 839 RIYRMGQKKDVFIH 852 (901)
T ss_pred HHHHhcccCceEEE
Confidence 99999988776654
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.08 E-value=9.9e-09 Score=111.64 Aligned_cols=281 Identities=16% Similarity=0.196 Sum_probs=167.7
Q ss_pred EEEEcCCCchHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcc
Q 009675 56 CFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (529)
.+|.+|.|+|||.+..-+.- .....+|+|+-.++|+.+...+++..++............ ...+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~--------~i~~~-~~ 122 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY--------IIDGR-PY 122 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc--------ccccc-cc
Confidence 47889999999976443332 2368999999999999999999998766432221111100 00000 12
Q ss_pred cEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHH-------HHHHHHHHHhCCCCCEEEEeecCC
Q 009675 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS-------YRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 132 ~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~-------y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
+-+.++.+-+ .++. ....+++++|||||+-.+.. |-|.+. +..|..+.+. ...+|++-||+.
T Consensus 123 ~rLivqIdSL------~R~~-~~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln 191 (824)
T PF02399_consen 123 DRLIVQIDSL------HRLD-GSLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLN 191 (824)
T ss_pred CeEEEEehhh------hhcc-cccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCC
Confidence 3333333321 1111 11133589999999987754 223333 3334444443 345899999999
Q ss_pred hhHHHHHHHHhccCCCeEEeccCCCCcc-----EEE--------------------EE--------------ecCchhhH
Q 009675 205 PKVQKDVMESLCLQNPLVLKSSFNRPNL-----FYE--------------------VR--------------YKDLLDDA 245 (529)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~r~nl-----~~~--------------------v~--------------~~~~~~~~ 245 (529)
....+.+...-+-.+-.++...+..++. ... .. .......-
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9987766664433332233222111110 000 00 00001122
Q ss_pred HHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC
Q 009675 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (529)
Q Consensus 246 ~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip 325 (529)
+..|..-|.. +..+-||++|...++.+++.....+..+..+++.-+..+- +.| ++++|++=|++..-|++..
T Consensus 272 ~~~L~~~L~~--gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 272 FSELLARLNA--GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHHHhC--CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccc
Confidence 3334444433 4567789999999999999999888899999887665522 334 5788999999999999986
Q ss_pred CccE--EEEe--CCC--CCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 326 DVRL--VCHF--NIP--KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 326 ~v~~--VI~~--~~p--~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
...| |.-| ... .++.+.+|.+||+ |.=.....++|++..
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 5533 3333 222 3567799999999 544456777777755
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.07 E-value=9e-08 Score=99.19 Aligned_cols=297 Identities=16% Similarity=0.193 Sum_probs=187.2
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCce-eEeccCc------------cH-------HHHHHHHHHhhcCC---------
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAG-EFLSSTQ------------TM-------QVKTKIYEDLDSGK--------- 128 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~-~~~~~~~------------~~-------~~~~~~~~~~~~~~--------- 128 (529)
.+++|||+|+|..+.+.|+.|.++.... ...+-.. .. ..+-..+..+-.|+
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5789999999999999999988853321 0000000 00 00000111111221
Q ss_pred ----CcccE---EEeCcccccChhhHHH-HH-------hhhccCCccEEEEeccccccc--CCCCCHHHHHH--------
Q 009675 129 ----PSLRL---LYVTPELTATPGFMSK-LK-------KIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK-------- 183 (529)
Q Consensus 129 ----~~~~l---l~~tpe~v~t~~~~~~-l~-------~~~~~~~l~~iViDEaH~~~~--~g~~fr~~y~~-------- 183 (529)
..+++ .|.++.++++|--+.. +. ....++.+.++|||.||.+.- |.| ....+..
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCC
Confidence 11222 2446667888843333 32 122245588999999999863 443 1111111
Q ss_pred ----HHHHHHhCC------CCCEEEEeecCChhHHHHHHHHhccCC-CeEEecc-----------CCCCccEEEEEecC-
Q 009675 184 ----LSSLRNYLP------DVPILALTATAAPKVQKDVMESLCLQN-PLVLKSS-----------FNRPNLFYEVRYKD- 240 (529)
Q Consensus 184 ----l~~l~~~~~------~~~ii~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~-----------~~r~nl~~~v~~~~- 240 (529)
+.+++..+- -.|.|++|+..+|+....+........ .+.+... ..-+.++..+....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 111111110 157999999999998776665333221 1111111 12223333332221
Q ss_pred --chhhHHHH----HHHHHH-hcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEE
Q 009675 241 --LLDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (529)
Q Consensus 241 --~~~~~~~~----l~~~l~-~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (529)
..+.+++. ++..+. ....+.+|||++|--+--.|.++|++.++..+.+|-..+..+-.+.-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 12333333 333344 44566799999999999999999999999999999999999999999999999999999
Q ss_pred EeCc--cccccccCCccEEEEeCCCCCHHHHHHHHcccCCCC------CCceEEEEEecccHHHHHHHHH
Q 009675 314 ATVA--FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ------LPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 314 aT~a--~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G------~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
-|.= +=+-..+.+++.||.|++|..+.-|-..++-.+... ....|.++|+.-|.-+++.|+-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9964 345577889999999999999988877776554443 3578999999999988888763
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.07 E-value=3.7e-09 Score=107.17 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=93.5
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC-CCeE-EEEeCccccccccCCccEEEEeC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~V-LVaT~a~~~GIDip~v~~VI~~~ 334 (529)
..-+.|||.......+-+.-.|.+.|+.|+-+-|+|++..|..+++.|+++ .+.| ||+-.+.|..+|+-....|..+|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 345789999888888888889999999999999999999999999999974 4554 67778999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCC--CceEEEEEeccc
Q 009675 335 IPKSMEAFYQESGRAGRDQL--PSKSLLYYGMDD 366 (529)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~--~g~~i~~~~~~d 366 (529)
+=+++.--+|...|..|-|+ |=..+.|+-...
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 88899999999999999885 445566655443
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.03 E-value=2.4e-08 Score=115.13 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=94.2
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcC--CCeEEEEeCccccccccCCccEEEEeCCCC
Q 009675 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (529)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~VLVaT~a~~~GIDip~v~~VI~~~~p~ 337 (529)
+++||.+.....+-+...|...++....++|+++.+.|...++.|.++ ..-++++|.+.|.|+|.-..+.||++|..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998899999999999999999999986 444667778999999999999999999999
Q ss_pred CHHHHHHHHcccCCCCCCceEEEEE
Q 009675 338 SMEAFYQESGRAGRDQLPSKSLLYY 362 (529)
Q Consensus 338 s~~~y~Q~~GRagR~G~~g~~i~~~ 362 (529)
++....|...|+.|.|+...+.+|-
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999887766653
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.91 E-value=6.8e-09 Score=104.14 Aligned_cols=161 Identities=19% Similarity=0.119 Sum_probs=95.6
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCchHHHHHHHHHh--c-C--C---CeEEEeCcHHHHHHHHHHHHHH
Q 009675 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL--A-K--P---GIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 42 ~Q~~~i~~~l-------------~g~dvlv~apTGsGKTl~~~lp~l--~-~--~---~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
+|.+++..++ ..+.+++...+|.|||+..+.-+. . . . ..+|||+|. ++..+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777777663 235678888999999987654332 1 1 1 259999999 888999999998
Q ss_pred cC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCccccc---ChhhHHHHHhhhccCCccEEEEecccccccC
Q 009675 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 101 ~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~---t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~ 173 (529)
.. .....+.+.. ..............++++|.+.+. .+.....+.. ..+++||+||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 65 2333333322 111122233345778888888766 1122222222 34899999999999654
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCC
Q 009675 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 220 (529)
Q Consensus 174 g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~ 220 (529)
. ..+......+....+++||||+..+...++...+.+-.+
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~ 189 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNP 189 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCT
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchheeec
Confidence 4 233333334556778999999988877777776655433
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=3e-07 Score=105.42 Aligned_cols=304 Identities=18% Similarity=0.170 Sum_probs=163.9
Q ss_pred CCEEEEcCCCchHHHHHHHHH-----hcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCC
Q 009675 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~-----l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (529)
+..+|+=-||||||+.....| +...+.+++|+-.+.|-.|..+.+++++..........+... ....+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~---Lk~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSE---LKELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHH---HHHHHhcC-
Confidence 468999999999998754322 234789999999999999999999997644433222223332 23333333
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 009675 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (529)
.-+++++|-..+.....-. ......+.=-+||+||||+ ++.|. .-..++..+++...++||+||--.--
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHR-SQ~G~-------~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHR-SQYGE-------LAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhh-ccccH-------HHHHHHHHhccceEEEeeCCcccccc
Confidence 3567777766554321111 0011122234689999998 66662 23345788889999999999864322
Q ss_pred HHHHHHhccCC--CeEEeccCCCC---ccEEEEE-ecCch-----------h----------------------------
Q 009675 209 KDVMESLCLQN--PLVLKSSFNRP---NLFYEVR-YKDLL-----------D---------------------------- 243 (529)
Q Consensus 209 ~~i~~~l~~~~--~~~~~~~~~r~---nl~~~v~-~~~~~-----------~---------------------------- 243 (529)
..-....+... ...+....... .+.|... ..+.. .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22001111100 00010000000 1111111 00000 0
Q ss_pred ----hHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC-----------C--------C----ceEEecCCCCH
Q 009675 244 ----DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-----------G--------I----SCAAYHAGLND 294 (529)
Q Consensus 244 ----~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~-----------g--------~----~~~~~h~~l~~ 294 (529)
.....+.+.++. ..+.++.+.+.+++.+..+++..... + . .....|....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK- 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH-
Confidence 000111111111 23557788888888555555443321 0 0 0000122222
Q ss_pred HHHHHHHHHH--hcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC--C-CCceEEEEEecccHHH
Q 009675 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--Q-LPSKSLLYYGMDDRRR 369 (529)
Q Consensus 295 ~~R~~~~~~f--~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~--G-~~g~~i~~~~~~d~~~ 369 (529)
..+.....+| .+...++||.++++-.|.|-|.+.. +-.|-|----..+|.+-|+.|. + ++...++-|.. -.+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-l~e~ 655 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-LKEA 655 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc-hHHH
Confidence 2223333443 3578999999999999999996654 4567777778899999999994 4 34445555544 3333
Q ss_pred HHHHHH
Q 009675 370 MEFILS 375 (529)
Q Consensus 370 ~~~i~~ 375 (529)
+...++
T Consensus 656 l~~Al~ 661 (962)
T COG0610 656 LKKALK 661 (962)
T ss_pred HHHHHH
Confidence 444443
No 164
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.86 E-value=1.8e-08 Score=98.34 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|+. |++.|.-++-.+..|+ ++.+.||-|||++..+|+.. .+..+-||+....|+..-.+.+..
T Consensus 66 ~rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 344556677875 8999999998887777 99999999999999888765 377889999999999987777665
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh---hccCCccEEEEecccccc
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---HSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~---~~~~~l~~iViDEaH~~~ 171 (529)
+|+.+...........+...+. .+|.|+|..-++-.-+.+.+... ...+.+.++||||+|.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999998888777777665 67999998866544333333211 123568999999999985
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.79 E-value=3.7e-09 Score=92.14 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCchHHHHHHH----HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCC
Q 009675 53 GRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l----p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (529)
|+--++-+.+|+|||--.+- -++.++.++||+.|||.++....+.|+...+ .+........ ..+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~--~~~t~~~~~~---------~~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPV--RFHTNARMRT---------HFGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSE--EEESTTSS-------------SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCc--ccCceeeecc---------ccCC
Confidence 44457889999999964222 2445799999999999999999999986542 2222221110 0111
Q ss_pred CcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 129 PSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
++..+.+.+ +...+.......++++||+||||..-.+.--+|.. +..+ ..-....+|++|||++...
T Consensus 73 --------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~---l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 --------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGY---LREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHH---HHHH-HHTTS-EEEEEESS-TT--
T ss_pred --------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhhee---HHHh-hhccCeeEEEEeCCCCCCC
Confidence 111334444 33334445556779999999999865433223322 2222 2233567999999998754
No 166
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.76 E-value=2.4e-07 Score=100.40 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=90.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----------------------CCCceEEecCCCCHHHHHHHHHHHhcC-CCe---
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISS-RKQ--- 310 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~--- 310 (529)
-+.+.|||..|....+-+..+|.- .|.....+.|..+...|..+.+.|.+- +.+
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 356899999999999888888863 244567888999999999999999863 222
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
.||+|.|.+.|||+-..+.||.+|..+++.--.|-+=|+-|.|+..-|++|
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 699999999999999999999999999999999999999999988877776
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=4.4e-06 Score=86.06 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=96.3
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc--cccccccCCccEEEEeCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNI 335 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a--~~~GIDip~v~~VI~~~~ 335 (529)
...++||.++--+--++.+++++.++....+|--.+...-.+.-+.|..|+..||+-|.- +=+--++.+|+.||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 445799999999999999999999988888887777777777788899999999999964 456788999999999999
Q ss_pred CCCHHHHH---HHHcccCCC----CCCceEEEEEecccHHHHHHHHH
Q 009675 336 PKSMEAFY---QESGRAGRD----QLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 336 p~s~~~y~---Q~~GRagR~----G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
|..+.-|. -+++|+.-. +....|.++|+.-|...+..++-
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 99987764 455555333 34467999999999988877753
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.43 E-value=9.4e-07 Score=88.29 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred hcCCCCCcHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEeCcHHHHHHHHHHHHH
Q 009675 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 33 ~fg~~~~r~~Q~~~i~----~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~-----~~lVi~P~~~L~~q~~~~l~ 99 (529)
.|.|. +||.|.+.+. .+..|+++++.||||+|||++|++|++. .+. ++++.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37787 6999999554 4557899999999999999999999973 233 79999999999999888888
Q ss_pred HcCCce
Q 009675 100 EKGIAG 105 (529)
Q Consensus 100 ~~gi~~ 105 (529)
+.....
T Consensus 83 ~~~~~~ 88 (289)
T smart00488 83 KLMQKV 88 (289)
T ss_pred hccccc
Confidence 764333
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.43 E-value=9.4e-07 Score=88.29 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred hcCCCCCcHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEeCcHHHHHHHHHHHHH
Q 009675 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 33 ~fg~~~~r~~Q~~~i~----~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~-----~~lVi~P~~~L~~q~~~~l~ 99 (529)
.|.|. +||.|.+.+. .+..|+++++.||||+|||++|++|++. .+. ++++.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37787 6999999554 4557899999999999999999999973 233 79999999999999888888
Q ss_pred HcCCce
Q 009675 100 EKGIAG 105 (529)
Q Consensus 100 ~~gi~~ 105 (529)
+.....
T Consensus 83 ~~~~~~ 88 (289)
T smart00489 83 KLMQKV 88 (289)
T ss_pred hccccc
Confidence 764333
No 170
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.19 E-value=5.2e-06 Score=76.10 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=76.2
Q ss_pred HHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC--ccccccccC
Q 009675 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (529)
Q Consensus 250 ~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GIDip 325 (529)
.++++..+ +.++||++|.+..+.+.+.++..+. ....+.- +..++..+++.|++++-.||+++. .+.+|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34455544 6799999999999999999987532 1123333 356778899999999999999999 999999999
Q ss_pred C--ccEEEEeCCCC----CH--------------------------HHHHHHHcccCCCCCCceEEEEEec
Q 009675 326 D--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (529)
Q Consensus 326 ~--v~~VI~~~~p~----s~--------------------------~~y~Q~~GRagR~G~~g~~i~~~~~ 364 (529)
+ ++.||..++|. ++ ....|.+||+-|....-.++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 78999999884 11 2235889999998765455555554
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.16 E-value=2e-07 Score=102.49 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=119.8
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHHHHH----cCCceeE
Q 009675 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKE----KGIAGEF 107 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~l~~----~gi~~~~ 107 (529)
.|.|.|.+.+..+.. ..++++.+|||+|||++|.+..... +.++++|+|..+|+...++.+.. -|++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 455677776655443 3678899999999999998766542 67899999999998876666555 3555555
Q ss_pred eccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC-CCCCHHHHHHHHH
Q 009675 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSS 186 (529)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~-g~~fr~~y~~l~~ 186 (529)
+.+....+.. .+ ....++++|||....-.+ ......-...+.++|+||.||+.+- |.-+ .+..
T Consensus 1007 ~tgd~~pd~~-----~v----~~~~~~ittpek~dgi~R--sw~~r~~v~~v~~iv~de~hllg~~rgPVl-----e~iv 1070 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-----AV----READIVITTPEKWDGISR--SWQTRKYVQSVSLIVLDEIHLLGEDRGPVL-----EVIV 1070 (1230)
T ss_pred ccCccCCChh-----he----ecCceEEcccccccCccc--cccchhhhccccceeecccccccCCCcceE-----EEEe
Confidence 5554433311 11 136788888886543221 1112222335788999999998763 3211 1111
Q ss_pred HHHhC------CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCcc-EEEEEe------cCchhhHHHHHHHHH
Q 009675 187 LRNYL------PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-FYEVRY------KDLLDDAYADLCSVL 253 (529)
Q Consensus 187 l~~~~------~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl-~~~v~~------~~~~~~~~~~l~~~l 253 (529)
.+..+ +.++++++|--+.. ..|+.++|+.....-++ ++.+|+- ...+.- .......-+.-.+.+
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~n--a~dla~wl~~~~~~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALAN--ANDLADWLNIKDMYNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhhc--cHHHHHHhCCCCcCCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 11111 13444544422222 26788888876542121 1222221 111110 000111112223334
Q ss_pred Hh-cCCceEEEEeCCcccHHHHH
Q 009675 254 KA-NGDTCAIVYCLERTTCDELS 275 (529)
Q Consensus 254 ~~-~~~~~~IIf~~s~~~~e~l~ 275 (529)
+. .+..++|||+.+++....-+
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta 1170 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTA 1170 (1230)
T ss_pred hcCCCCCceEEEeecccccccch
Confidence 44 46678999999887654433
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.14 E-value=1.4e-05 Score=86.79 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=84.4
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEE
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~V 330 (529)
.+.++||.+-=...-.|..+|... .+.....|+.+...+..++.+....|..++|+.|+.+...|-+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 345777777666666666665432 3678889999998888888888888999999999999999999999998
Q ss_pred EEeCCCC------------------CHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 331 CHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 331 I~~~~p~------------------s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
|..+.-+ |.....||.||+||. ++|.|..+.+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 8665432 667789999999998 578888777643
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.12 E-value=0.00017 Score=81.13 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=49.1
Q ss_pred ccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChh---
Q 009675 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPK--- 206 (529)
Q Consensus 131 ~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l-~~l~~~~~~~~ii~lSAT~~~~--- 206 (529)
-.++++||.++... .|....+...+..|||||||++..-. .|.-+ ...+...+..-+.+|||.+...
T Consensus 8 ggi~~~T~rIl~~D----lL~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVD----LLTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhH----HhcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 46788888776543 23444555668999999999996521 12223 3344444455588999998763
Q ss_pred --HHHHHHHHhccC
Q 009675 207 --VQKDVMESLCLQ 218 (529)
Q Consensus 207 --~~~~i~~~l~~~ 218 (529)
-...+.+.|++.
T Consensus 79 ~~~l~~vmk~L~i~ 92 (814)
T TIGR00596 79 FSPLETKMRNLFLR 92 (814)
T ss_pred hHHHHHHHHHhCcC
Confidence 245555555553
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.10 E-value=4.7e-05 Score=85.80 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 009675 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (529)
Q Consensus 308 ~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (529)
.++.|++-+++..|.|-|+|=.++-+.-..|...-.|.+||.-|-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999888999999999999883
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.82 E-value=0.00012 Score=72.12 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHc----------CCCEEEEcCCCchHHHHHH---HHHhcCC-CeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCYQ---IPALAKP-GIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~----------g~dvlv~apTGsGKTl~~~---lp~l~~~-~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
.+...|.+++--+.+ +.-+++--.||.||--... +-...++ .++|.|+.+-.|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 478899998854431 2345556699999975322 2222333 4699999999999999999998775
Q ss_pred ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccCh--------hhHHHHHhhhccCCccEEEEecccccccCCC
Q 009675 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (529)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~--------~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~ 175 (529)
....+......... ......-.++++|.-.+.+. .++..+........=.+||+||+|....-..
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 54333322211110 00112345777777654433 2344443333233345899999999865321
Q ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 176 ~---fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
. -...=.....+.+.+|+.+++.+|||...+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase 223 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASE 223 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCC
Confidence 1 111113455688899999999999997655
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.63 E-value=0.00015 Score=68.24 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHH--HHh-cCCCeEEEeCcHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~--dvlv~apTGsGKTl~~~l--p~l-~~~~~~lVi~P~~~L~~q 93 (529)
+|++.|.+++..++... -.++.+|.|+|||.+... .++ ..+..+++++||...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 47899999999997654 356789999999965321 122 236789999999877665
No 177
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.55 E-value=0.013 Score=63.67 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=94.0
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCCC------------------ceEEecCCCCHHHHHHHHHHHhcC---CCeEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~------------------~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~ 316 (529)
+.++|||..+....+.+.+.|.+..+ ....+.|..+..+|++.+++|.+. ..-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45789999888888888888876422 223567888999999999999863 235889999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHH
Q 009675 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (529)
Q Consensus 317 a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i 373 (529)
+...|||+-..+-+|.++..++..--.|.+-|.-|.|+...|++|---.|...-++|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999988888888999999999999999999999999999999776665444444
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.52 E-value=0.0002 Score=68.73 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchHHH--HHHHHHh---------cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~d-vlv~apTGsGKTl--~~~lp~l---------~~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
++.+.|.+|+..+++... .+|.||.|+|||. +.++..+ ..++.+||++|+..-+.+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 8999999999993 3334333 3478899999999999999988877
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.44 E-value=0.00029 Score=74.41 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCCE-EEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHH
Q 009675 37 AQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dv-lv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
..+.+-|++|+....+.+++ ++.+|+|+|||.+-. .-++.++.++||+.|+..-+...+++|.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 46888999999999988664 689999999996543 2345568999999999999999998765
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.42 E-value=0.00025 Score=66.72 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEeCcHHHH
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIAL 90 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~~L 90 (529)
...++.|..+++++++.+-+++.+|.|+|||+..+..++. . -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4567899999999998788899999999999887765553 2 3467888787754
No 181
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.0013 Score=72.86 Aligned_cols=141 Identities=23% Similarity=0.199 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCE-EEEcCCCchHHHH--HHHHHhc-CCCeEEEeCcHHHHHHHH
Q 009675 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMC--YQIPALA-KPGIVLVVSPLIALMENQ 94 (529)
Q Consensus 19 ~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dv-lv~apTGsGKTl~--~~lp~l~-~~~~~lVi~P~~~L~~q~ 94 (529)
+..+.|.+..... ..+...|++|+..++..+|. ++.+-+|+|||.. .++-+|. .+.++|..+=|.+-+...
T Consensus 655 ~~~~~p~~~~~~~-----~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNI 729 (1100)
T KOG1805|consen 655 SKVLIPKIKKIIL-----LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNI 729 (1100)
T ss_pred ccccCchhhHHHH-----hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHH
Confidence 3455566655422 25888999999999988764 7889999999954 3444443 488899999999999999
Q ss_pred HHHHHHcCCceeEeccCccHHHHH-----------HHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009675 95 VIGLKEKGIAGEFLSSTQTMQVKT-----------KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (529)
...|+..++...-+.+........ .-++++...-.+..++.+|---+..| ....+.+++.|
T Consensus 730 LiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p--------lf~~R~FD~cI 801 (1100)
T KOG1805|consen 730 LIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP--------LFVNRQFDYCI 801 (1100)
T ss_pred HHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch--------hhhccccCEEE
Confidence 999999888765554433221111 11122222222334444443323222 23345699999
Q ss_pred Eeccccccc
Q 009675 164 IDEAHCISS 172 (529)
Q Consensus 164 iDEaH~~~~ 172 (529)
||||-.++.
T Consensus 802 iDEASQI~l 810 (1100)
T KOG1805|consen 802 IDEASQILL 810 (1100)
T ss_pred Ecccccccc
Confidence 999999865
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.38 E-value=0.00044 Score=54.33 Aligned_cols=53 Identities=28% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHcCCCE-EEEcCCCchHHHHHH--HHHhc-C----CCeEEEeCcHHHHHHHHHHHH
Q 009675 46 AIQAVLSGRDC-FCLMPTGGGKSMCYQ--IPALA-K----PGIVLVVSPLIALMENQVIGL 98 (529)
Q Consensus 46 ~i~~~l~g~dv-lv~apTGsGKTl~~~--lp~l~-~----~~~~lVi~P~~~L~~q~~~~l 98 (529)
++...+.+.++ +|.+|.|+|||.... +..+. . +..++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45534445554 459999999994432 11221 1 678999999999999887777
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.33 E-value=0.0018 Score=72.75 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-C--CeEEEeCcHHHHHH
Q 009675 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (529)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~--~lp~l~~-~--~~~lVi~P~~~L~~ 92 (529)
....+|+ .+++.|++++..+..++-+++.++.|+|||... ++-++.. + ..+++++||-.-+.
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 3444565 599999999999998888999999999999643 2333333 3 56788899977665
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.28 E-value=0.0032 Score=61.10 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=40.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cC--CCeEEEeCcHHHH
Q 009675 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIAL 90 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l---~~--~~~~lVi~P~~~L 90 (529)
++...+..|...+.++.++.-+++.+|+|+|||+....-++ .. -.++++.-|..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 55566678999999998888888999999999976554333 22 2345566677654
No 185
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.23 E-value=0.0031 Score=55.89 Aligned_cols=66 Identities=21% Similarity=0.394 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCC------ceEEecCCCCHHHHHHHHHHHhcCC-CeEEEEeCccccccccCC--ccEEEEeCCCC
Q 009675 272 DELSAYLSAGGI------SCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK 337 (529)
Q Consensus 272 e~l~~~L~~~g~------~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~GIDip~--v~~VI~~~~p~ 337 (529)
+.++..+...+. .-..+.-+.+..+...+++.|++.. ..||++|..+++|||+|+ ++.||..++|.
T Consensus 5 ~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 5 ESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 445555554443 2244455566666788999998654 379999988999999997 57899999874
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.23 E-value=0.0011 Score=68.32 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=34.0
Q ss_pred EEEEcCCCchHHHHHH-HHH-h---cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ-IPA-L---AKPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~-l---~~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
++|.+..|||||+... +.. + ..+..++++++..+|+......+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 6789999999997654 222 2 2477899999999998876666655
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.14 E-value=0.0032 Score=55.90 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCC---ceEEecCCCCHHHHHHHHHHHhcCCC---eEEEEeCc--cccccccCC--ccEEEEeCCCC---
Q 009675 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (529)
Q Consensus 271 ~e~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~VLVaT~a--~~~GIDip~--v~~VI~~~~p~--- 337 (529)
.+.+++.+++.+. ....+.-+.+..+...+++.|++..- .||+++.- +++|||+|+ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455566655443 22333333333455778888886433 69999887 999999997 68999999884
Q ss_pred -C---------------------------HHHHHHHHcccCCCCCCceEEEEEe
Q 009675 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 338 -s---------------------------~~~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
+ +....|.+||+=|....-.++++.+
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1223688899999875544555554
No 188
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.11 E-value=0.0022 Score=55.63 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=12.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++-+++.||+|+|||...
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456889999999999754
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.06 E-value=0.0075 Score=66.29 Aligned_cols=76 Identities=21% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCC-CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-----CCeEEEeCcHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHA-QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQV 95 (529)
Q Consensus 24 ~~~~~~l~~~fg~~-~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~--~lp~l~~-----~~~~lVi~P~~~L~~q~~ 95 (529)
..+...|.+.|+.. ...++|++|+...+.++-+++.+++|+|||.+. ++..+.. ...++++.||.--+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 45666777777654 235899999999999999999999999999653 2333322 246788899987777655
Q ss_pred HHHH
Q 009675 96 IGLK 99 (529)
Q Consensus 96 ~~l~ 99 (529)
+.+.
T Consensus 217 e~~~ 220 (615)
T PRK10875 217 ESLG 220 (615)
T ss_pred HHHH
Confidence 5554
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.03 E-value=0.011 Score=56.26 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHc---CCCEEEEcCCCchHHHHHHHHHhc----CC-CeEEEeCcHHHHHHHHHHHHHH
Q 009675 37 AQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPALA----KP-GIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~---g~dvlv~apTGsGKTl~~~lp~l~----~~-~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
--.|+.|.++...+.+ |++.+.++-+|.|||.+ ++|++. .+ ..+.+++|. +|..|....|++
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRS 91 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHH
Confidence 3599999999999986 57899999999999987 555543 33 456666664 688888877776
No 191
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.02 Score=59.44 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCEEEEcCCCchHHHHHH-HHHh-c-----CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IPAL-A-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~l-~-----~~~~~lVi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~ 123 (529)
+.+++++|||+|||.+.. +.+. . .+..+.+++ +.+.-+.+|...+.. +|++.....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~-------------- 240 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE-------------- 240 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC--------------
Confidence 457889999999997654 3322 1 234454444 555555555555444 555432211
Q ss_pred hhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-C-CCEEEEe
Q 009675 124 LDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALT 200 (529)
Q Consensus 124 ~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~-~~ii~lS 200 (529)
++. ....+.. ....++|+||++.+... + ......+..+..... . -.++.++
T Consensus 241 -------------------~~~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVls 294 (388)
T PRK12723 241 -------------------SFKDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVS 294 (388)
T ss_pred -------------------cHHHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 111 1111111 24578999999998642 1 112345555555442 3 4579999
Q ss_pred ecCChhHHHHHHHHhc
Q 009675 201 ATAAPKVQKDVMESLC 216 (529)
Q Consensus 201 AT~~~~~~~~i~~~l~ 216 (529)
||.......++.....
T Consensus 295 at~~~~~~~~~~~~~~ 310 (388)
T PRK12723 295 STTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999887776666553
No 192
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.82 E-value=0.0024 Score=68.15 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=63.9
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH--h--cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009675 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--L--AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (529)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~--l--~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (529)
.+|..++..-|..|+.++|...=.++++|+|+|||.+..--. + ...+.+||++|+.--+.|..+.+.+.|+++.-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 478889999999999999999989999999999996533111 1 247899999999998999999999988877655
Q ss_pred c
Q 009675 109 S 109 (529)
Q Consensus 109 ~ 109 (529)
.
T Consensus 485 ~ 485 (935)
T KOG1802|consen 485 C 485 (935)
T ss_pred e
Confidence 3
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.74 E-value=0.017 Score=63.40 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 40 r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~--~lp~l~~------~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.++|+.++..++.++-+++.++.|+|||.+. ++..+.. ..++++.+||---+....+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3799999999999999999999999999653 2333321 14688999997766655554433
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.74 E-value=0.0064 Score=67.09 Aligned_cols=72 Identities=25% Similarity=0.256 Sum_probs=51.3
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHh---c--------------C-----------
Q 009675 30 LRWHFGHAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPAL---A--------------K----------- 77 (529)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~----g~dvlv~apTGsGKTl~~~lp~l---~--------------~----------- 77 (529)
+.-.|.|. |+|.|...+..++. ..+.++..|||+||||+.+-..| . +
T Consensus 14 v~V~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 14 VPVEFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ceeeccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 33346664 89999998887764 47899999999999987542222 0 0
Q ss_pred -----------------CCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 78 -----------------PGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 78 -----------------~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
.+++++-+-|.+-+.|.++++++.+
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 2346666677777889999999854
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.67 E-value=0.016 Score=50.51 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.+|+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999996543
No 196
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.61 E-value=0.0079 Score=66.72 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--H-HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009675 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~--l-p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (529)
..+.+.|.+++..++.. ..+++.+|+|+|||.+.. + -++..+.++++++|+..-+.+..+.|...++...-+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg 232 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLG 232 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeC
Confidence 35788999999999887 567899999999995432 2 2334577999999999999999999988655544443
No 197
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.59 E-value=0.0067 Score=59.58 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCeEEEEeCccccccccCC--------ccEEEEeCCCCCHHHHHHHHcccCCCCCCce
Q 009675 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (529)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GIDip~--------v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~ 357 (529)
...+.|++|+.+|+|.|.+.+.||.+.. -|+-|...+|+|.+..+|..||+.|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 4467899999999999999999998864 2567788899999999999999999997544
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.52 E-value=0.011 Score=59.27 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=46.3
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHHHHH
Q 009675 29 LLRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALM 91 (529)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l~g~--dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~~L~ 91 (529)
.-++.||++...-.|.-|+..++... =|.+.++-|+|||+-++-+++.. ..++||-=|+..+-
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 34478999866677888888888663 35678899999998777666643 45677777887664
No 199
>PRK06526 transposase; Provisional
Probab=96.50 E-value=0.016 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.0
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~ 71 (529)
-.++++++.||+|+|||....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hcCceEEEEeCCCCchHHHHH
Confidence 356799999999999996443
No 200
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.022 Score=55.04 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.5
Q ss_pred CCEEEEcCCCchHHHH
Q 009675 54 RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (529)
..+++.+|+|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3489999999999953
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.41 E-value=0.0044 Score=64.17 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEcCCCchHHHHHHH--HHhc-CCCeEEEeCcHHHHHH
Q 009675 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALME 92 (529)
Q Consensus 38 ~~r~~Q~~~i~~~------l~g~dvlv~apTGsGKTl~~~l--p~l~-~~~~~lVi~P~~~L~~ 92 (529)
++.+-|++++..+ ..+..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 3678899998887 5678999999999999975421 1122 2567888899865443
No 202
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.35 E-value=0.054 Score=50.89 Aligned_cols=127 Identities=20% Similarity=0.131 Sum_probs=67.0
Q ss_pred EEEEcCCCchHHHHHH-HHHh--cCCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCC
Q 009675 56 CFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (529)
+++++|||+|||.+.. +.+. .++.++.+++ ..|.=+.+|.+.+.+ ++++...........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-------------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-------------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------------
Confidence 5789999999996543 2221 1244444444 345555566655544 454433222111110
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHH
Q 009675 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (529)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~ 208 (529)
............+..++|+||-+.+... -......+..+.+.. |....+.++||...+..
T Consensus 70 ---------------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 70 ---------------EIAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ---------------HHHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ---------------HHHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0111111222234588999999876432 233345566655554 44567899999988776
Q ss_pred HHHHHHh
Q 009675 209 KDVMESL 215 (529)
Q Consensus 209 ~~i~~~l 215 (529)
..+....
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555543
No 203
>PRK08181 transposase; Validated
Probab=96.31 E-value=0.038 Score=54.57 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=31.3
Q ss_pred cHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHH-HH-HhcCCCeEEEeCcHHHHHHH
Q 009675 40 RDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 40 r~~Q~~~i~----~~l~g~dvlv~apTGsGKTl~~~-lp-~l~~~~~~lVi~P~~~L~~q 93 (529)
.+.|..++. .+-.++++++.||+|+|||.... +. .+...+..++..+..+|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 345555442 23367889999999999994332 21 12223444444555666655
No 204
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.29 E-value=0.025 Score=55.95 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHcCCCEEEEcCCCchHHHH-HHHHH--hcC-CCeEEEeCcHHHHHHHHHHHHHHc--CCceeEec--cCccHHHHHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMC-YQIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~-~~lp~--l~~-~~~~lVi~P~~~L~~q~~~~l~~~--gi~~~~~~--~~~~~~~~~~~~ 121 (529)
+..|.-+++.||+|+|||.. .++.. ... +..+++++--- -..+...++... ++...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 34567788999999999953 33322 223 66788877421 223333333331 33222111 111122222222
Q ss_pred HHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 122 ~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
..+.. .+.+ .++-.+....-......+.........++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22221 1112 1221221111123444444444445689999999999864
No 205
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.27 E-value=0.1 Score=50.56 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
..+++.||+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999543
No 206
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.22 E-value=0.0017 Score=71.08 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=54.4
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc---CCCeEEEEeCccccc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 321 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~VLVaT~a~~~G 321 (529)
.+.+++||..-....+-+..++...+ ....+.|..+..+|+....+|.. ...-.|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 56789999998888888889998888 88899999999999999999983 345578889988766
No 207
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.20 E-value=0.0061 Score=61.28 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---HhcC----CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAK----PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp---~l~~----~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
+++-|.++|.. ...+++|.|+.|||||.+.+-- .+.. ...+|++++|++.+.+...++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 46889999988 6788999999999999875422 2222 46799999999999988888877
No 208
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.02 Score=58.39 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=23.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcH
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~ 87 (529)
.++|+.+|+|+|||..+.+-+-..+....-++.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 4789999999999987665554444444444443
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.15 E-value=0.013 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.096 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHH---HhcCCCeEEEeCc
Q 009675 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP 86 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---~l~~~~~~lVi~P 86 (529)
=.++.+|+|+|||...+-- +...+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3578999999999654321 2234667777766
No 210
>PRK06893 DNA replication initiation factor; Validated
Probab=96.08 E-value=0.03 Score=54.00 Aligned_cols=48 Identities=13% Similarity=0.338 Sum_probs=27.1
Q ss_pred CccEEEEecccccccCCCCCH-HHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 009675 158 LLNLVAIDEAHCISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr-~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (529)
..++++|||+|.+..... .. .-+.-+..+.. .+.+++++|++.+|...
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred cCCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 467999999999863211 11 11122222222 14567788888777643
No 211
>PLN03025 replication factor C subunit; Provisional
Probab=96.00 E-value=0.033 Score=56.59 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=29.0
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (529)
...+++|||+|.+.... -..|....+.+++.-.++++++..+....
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIE 144 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccch
Confidence 46799999999987532 24455555666655556666665544433
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.98 E-value=0.015 Score=50.05 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcC-CC--eEEEeCcHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l~~-~~--~~lVi~P~~~L 90 (529)
++.+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999997654333322 22 46777765443
No 213
>PRK12377 putative replication protein; Provisional
Probab=95.96 E-value=0.046 Score=53.30 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEeCcHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-l-p~l~~~~~~lVi~P~~~L~~q 93 (529)
..+++.+|+|+|||.... + -.+...+..++.++..+|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578999999999995332 2 223334455555666667665
No 214
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.065 Score=56.83 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=27.4
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
+...++||||||.+.... ...|....+..|..-++.+.+|-...+...|.
T Consensus 120 g~~KV~IIDEah~Ls~~A------~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS------FNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred CCCEEEEEechhhcCHHH------HHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 457899999999987522 24444444444433344455554444333333
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.96 E-value=0.45 Score=50.24 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=34.6
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHh--CCCCCEEEEeecCChhHHHHHHHHhc
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~--~~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
..++|+||.+-.... + ......|..+... .|....++++||..+.....+...+.
T Consensus 299 ~~DlVlIDt~G~~~~---d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR---D-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC---C-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 478999999876321 1 1223445555442 23334788999999887777776654
No 216
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.96 E-value=0.084 Score=48.76 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=32.4
Q ss_pred EEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009675 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (529)
Q Consensus 56 vlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~ 104 (529)
+++.+|+|+|||...+ ...+..+..+++++.. +-..+..+.+..+|..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999996432 3344557788888753 4445666667666543
No 217
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.15 Score=50.31 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCCEEEEcCCCchHHHHHH--HHHhcCC-CeEEEeCcHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ--IPALAKP-GIVLVVSPLIALMEN 93 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~--lp~l~~~-~~~lVi~P~~~L~~q 93 (529)
++.+++.+|+|+|||.... .-.+... +..++..+..+++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999994322 2222322 444444555555544
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.18 Score=52.20 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=33.8
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhc
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-~~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
..++|+||-+-+... -...+..+..+... .|...++.+|||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999999877442 12234455544433 34445677999887766555665543
No 219
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.84 E-value=0.13 Score=45.91 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=22.7
Q ss_pred EEEEcCCCchHHHHHH-H--HHhcCCCeEEEeCcHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P~~~L 90 (529)
+++.+|+|+|||.... + .+...++.++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 5789999999996433 2 122246777777765443
No 220
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.83 E-value=0.21 Score=51.51 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH----hcC-CCeEEEeCc-HHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHh
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IPA----LAK-PGIVLVVSP-LIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDL 124 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp~----l~~-~~~~lVi~P-~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~ 124 (529)
++-+.++||||.|||.+-. |++ +.. ....||-.- .|-=+..|.....+ +|++....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv---------------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV---------------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe----------------
Confidence 5667889999999996533 222 222 334444443 33334444444333 44444332
Q ss_pred hcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCC-CEEEEeec
Q 009675 125 DSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTAT 202 (529)
Q Consensus 125 ~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~-~ii~lSAT 202 (529)
.+|. +...+. .....++|.||=|-+-.. | .....+|..+.+...+. -.+.+|||
T Consensus 267 -----------------~~~~el~~ai~---~l~~~d~ILVDTaGrs~~---D-~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 267 -----------------YSPKELAEAIE---ALRDCDVILVDTAGRSQY---D-KEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred -----------------cCHHHHHHHHH---HhhcCCEEEEeCCCCCcc---C-HHHHHHHHHHHhccccceEEEEEecC
Confidence 2221 211222 223468899998865221 1 12223444444444333 35899999
Q ss_pred CChhHHHHHHHHhccC
Q 009675 203 AAPKVQKDVMESLCLQ 218 (529)
Q Consensus 203 ~~~~~~~~i~~~l~~~ 218 (529)
....+.+.+...+..-
T Consensus 323 ~K~~dlkei~~~f~~~ 338 (407)
T COG1419 323 TKYEDLKEIIKQFSLF 338 (407)
T ss_pred cchHHHHHHHHHhccC
Confidence 9999999888877653
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=95.79 E-value=0.38 Score=49.06 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=32.9
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHH
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
..++|+||.|+++.. -...+..|..+.+. .|...++.++||...+......
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 468999999998742 23334555555443 3566678889988766554443
No 222
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.043 Score=61.80 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC----C-CceEE-ecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
.+..+..+..+.-...+.++++.++|..-+.+.++.|.+. | ..+.. ||+.|+.+++++.++++.+|+.+|+|+|
T Consensus 109 GKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 109 GKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEe
Confidence 3445555555555555678899999999888888888764 2 44333 9999999999999999999999999999
Q ss_pred Ccccc-ccc-cC--CccEEEEeC
Q 009675 316 VAFGM-GID-RK--DVRLVCHFN 334 (529)
Q Consensus 316 ~a~~~-GID-ip--~v~~VI~~~ 334 (529)
+.|-. -.| +. ..++|+--|
T Consensus 189 s~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 189 SQFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHHHHhhHHHhcccCCCEEEEcc
Confidence 88742 222 11 355666555
No 223
>PRK05973 replicative DNA helicase; Provisional
Probab=95.67 E-value=0.17 Score=48.84 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcHHHHHHH---------HHHHcCCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeC
Q 009675 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAI---------QAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVS 85 (529)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i---------~~~l~g~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~ 85 (529)
....++..+.+.-.+ -||.+..-....+- --+..|.-++|.|++|+|||...+ .-+...+..+++++
T Consensus 21 ~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 21 QNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred cCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 346777777766665 38775444333322 122234567889999999996433 23344566788887
Q ss_pred cHHHHHHHHHHHHHHcCC
Q 009675 86 PLIALMENQVIGLKEKGI 103 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~gi 103 (529)
---. ..|..+++..+|+
T Consensus 100 lEes-~~~i~~R~~s~g~ 116 (237)
T PRK05973 100 LEYT-EQDVRDRLRALGA 116 (237)
T ss_pred EeCC-HHHHHHHHHHcCC
Confidence 4433 3566667777664
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.26 Score=47.90 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHc-------C-CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEeCcHHHHHHH
Q 009675 41 DKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 41 ~~Q~~~i~~~l~-------g-~dvlv~apTGsGKTl~~~-l-p~l~~~~~~lVi~P~~~L~~q 93 (529)
+.|..++..+.+ + ..+++.+++|+|||.... + -.+...+..+++.+..+|+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 356555544432 1 468899999999995432 2 223333444444455555443
No 225
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.57 E-value=0.014 Score=64.32 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-----C--------CCceEEEEEecccHHHHHHH
Q 009675 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-----Q--------LPSKSLLYYGMDDRRRMEFI 373 (529)
Q Consensus 307 g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~-----G--------~~g~~i~~~~~~d~~~~~~i 373 (529)
...+.|.+-.++-+|.|-|+|=.++-..-..|..+=.|++||.-|- | .+..-.++.+.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 2 12223445555666666655
Q ss_pred HHhc
Q 009675 374 LSKN 377 (529)
Q Consensus 374 ~~~~ 377 (529)
.++.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5544
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.16 Score=51.62 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCchHHHHHH--HHHhcCCCeEEEeCcHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~--lp~l~~~~~~lVi~P~~~L~~q 93 (529)
++.+++.||||+|||.... ...+...+..++..+...|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 5789999999999995322 2223334444555566666554
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.54 E-value=0.18 Score=48.31 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
++.+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999953
No 228
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.50 E-value=0.12 Score=50.05 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred cCCCEEEEcCCCchHHHHHH---HHHhcC-CCeEEEeC---cHHHHHHHHHHHHHHcCCceeEeccC-ccHHHHHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYED 123 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~---lp~l~~-~~~~lVi~---P~~~L~~q~~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~ 123 (529)
.|.-+++.|++|+|||...+ .-+... +..+++++ |..+++....... .++....+... ............
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45567889999999995422 222233 77888888 3445544432221 23322111111 111111111111
Q ss_pred hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 124 ~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
..... ...+.+.....+........+.........++||||=.+.+..
T Consensus 90 ~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 90 IGELK-ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 11100 1223322211122233444444444444789999999998754
No 229
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.074 Score=53.80 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHH
Q 009675 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 36 ~~~~r~~Q~~~i~~~l----~g~---dvlv~apTGsGKTl~~ 70 (529)
++.++|||..++..+. +|+ -.++.+|.|.||+..+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 4678999999998776 333 4789999999999644
No 230
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.41 E-value=0.097 Score=58.78 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=65.6
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
+.++||.+++++.+.++.+.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|...-. +.++++.+||..+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 557999999999999999999874 888999999999999999888889999999999974432 5677889888666
No 231
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.40 E-value=0.12 Score=51.20 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=25.4
Q ss_pred CccEEEEecccccccCCCC-CHHHHHHHHHHHHhCCCCCEEEEeec
Q 009675 158 LLNLVAIDEAHCISSWGHD-FRPSYRKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~-fr~~y~~l~~l~~~~~~~~ii~lSAT 202 (529)
.+.++||||.|.+...... -|...+.|+.+-+.+ ++|+|++ +|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v-Gt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV-GT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe-cc
Confidence 5889999999998775421 222223333332322 5778765 44
No 232
>PRK08116 hypothetical protein; Validated
Probab=95.38 E-value=0.23 Score=49.04 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.0
Q ss_pred CEEEEcCCCchHHHHHHH--HHhcCCCeEEEeCcHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~~L~~q 93 (529)
.+++.|++|+|||..... -.+...+..++..+..+|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 489999999999964331 122222444445555555544
No 233
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.087 Score=57.72 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=32.3
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
.+..+++||||+|.|+.- ..+.|.+..+..|..-+++|..|-...+...|..
T Consensus 122 ~gr~KViIIDEah~Ls~~------AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH------AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cCCceEEEEEChHhcCHH------HHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 456889999999999752 2344444445545444566666666555554444
No 234
>PF13173 AAA_14: AAA domain
Probab=95.34 E-value=0.094 Score=45.48 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=27.7
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
-.+++|||+|.+.+|. ..+..+.+..++.+++ +|++....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii-~tgS~~~~ 101 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKII-LTGSSSSL 101 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEE-EEccchHH
Confidence 4689999999998876 5667777766666554 44444333
No 235
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.32 E-value=0.079 Score=52.06 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=72.2
Q ss_pred CEEEEcCCCchHHHHHH---HHHhcC-CCeEEEeCc---HHHHHHHHHHHHHHcCCceeEeccC-ccHHHHHHHHHHhhc
Q 009675 55 DCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDS 126 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~---lp~l~~-~~~~lVi~P---~~~L~~q~~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~~~~ 126 (529)
=+++.|+||.|||...+ .-+... +..+++++. ..+++...+..+. +++..-+..+ ....+...+......
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHHH
Confidence 35677899999996543 222333 578888885 3455444444433 3433323222 222332332221111
Q ss_pred CCCcccEE-EeCcccccChhhHHHHHhhhcc-CCccEEEEecccccccCCC--CCHHHHH----HHHHHHHhCCCCCEEE
Q 009675 127 GKPSLRLL-YVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH--DFRPSYR----KLSSLRNYLPDVPILA 198 (529)
Q Consensus 127 ~~~~~~ll-~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~--~fr~~y~----~l~~l~~~~~~~~ii~ 198 (529)
- ....+. +.+|. +........+...... ..+++||||=.|.+..... +-+..+. .|..+...+ ++|+++
T Consensus 99 l-~~~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~vi~ 175 (259)
T PF03796_consen 99 L-SDLPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPVIA 175 (259)
T ss_dssp H-HTSEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEEEE
T ss_pred H-hhCcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeEEE
Confidence 1 012233 23332 2223334444444433 6789999999999977421 1222222 233333322 789998
Q ss_pred EeecCC
Q 009675 199 LTATAA 204 (529)
Q Consensus 199 lSAT~~ 204 (529)
+|..-.
T Consensus 176 ~sQlnr 181 (259)
T PF03796_consen 176 LSQLNR 181 (259)
T ss_dssp EEEBSG
T ss_pred ccccCh
Confidence 887643
No 236
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.23 E-value=0.42 Score=54.02 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred CcHHHHHHHHHHH----cC---CCE-EEEcCCCchHHHHH
Q 009675 39 FRDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (529)
Q Consensus 39 ~r~~Q~~~i~~~l----~g---~dv-lv~apTGsGKTl~~ 70 (529)
-|.-|.+.|..++ .+ ..+ +|.|+||+|||++.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 4556666554443 22 244 59999999999864
No 237
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.19 E-value=0.12 Score=60.34 Aligned_cols=67 Identities=25% Similarity=0.201 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHH--HHh-cCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 009675 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~l--p~l-~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (529)
.|++.|.+++..+..+ +-+++.++.|+|||...-. -++ ..+..++.+.|+-.-+ ..|.+ .|+.+..+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA----~~L~e~~Gi~a~TI 452 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEAGIQSRTL 452 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH----HHHHHhhCCCeeeH
Confidence 5999999999988654 5568899999999965321 122 2377889999986544 34443 46655444
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.17 E-value=0.089 Score=63.30 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HHHh---c--CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPAL---A--KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~--lp~l---~--~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~ 107 (529)
.|++.|++++..++.. +-+++.+..|+|||.... +.++ . .+..++.+.||-.-+. .|.+.|+.+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~----~L~e~Gi~A~T 909 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG----EMRSAGVDAQT 909 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH----HHHHhCchHhh
Confidence 6899999999999965 567899999999997631 2222 1 2456888999966544 44455655433
No 239
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.17 E-value=0.015 Score=60.82 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=45.4
Q ss_pred CEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009675 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (529)
+++++||||+|||.++.+|.+.. .+.+||+-|--++.......++..|-++..++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 57899999999999999998765 678899999999988777777777666655553
No 240
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.23 Score=53.24 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
+...++||||+|.++.. ..+.|....+..|..-++.|.+|-...+...+.
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH
Confidence 45789999999998752 234555555655554455566665555444333
No 241
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.05 E-value=0.15 Score=53.80 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
..+++.||+|+|||.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976543
No 242
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.03 E-value=0.13 Score=55.69 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.8
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|..+-. ...+++.+||..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 457999999999999999999864 778999999999999999888888999999999975433 4567888888655
No 243
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.1 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHH
Q 009675 39 FRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g----~dvlv~apTGsGKTl~~ 70 (529)
.+|||...+..+... +-.++.+|.|.||+..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 579999999888854 34789999999999654
No 244
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.2 Score=56.84 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
++..++||||||.|.. ...+.|.+..+..|..-++++..|-...+
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 5678999999999864 23345555555555443444444444443
No 245
>PRK04195 replication factor C large subunit; Provisional
Probab=94.96 E-value=0.17 Score=54.49 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT 202 (529)
...+|||||+|.+...+ -+.....|..+... ++.|+|+.+..
T Consensus 98 ~~kvIiIDEaD~L~~~~--d~~~~~aL~~~l~~-~~~~iIli~n~ 139 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE--DRGGARAILELIKK-AKQPIILTAND 139 (482)
T ss_pred CCeEEEEecCccccccc--chhHHHHHHHHHHc-CCCCEEEeccC
Confidence 35689999999987522 22333445444442 45677765543
No 246
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.91 E-value=0.21 Score=56.27 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=23.9
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
..+++|||+|.+.... ...++....+..+++++||..+
T Consensus 110 ~~IL~IDEIh~Ln~~q---------QdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 110 RTILFIDEVHRFNKAQ---------QDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred ceEEEEeChhhCCHHH---------HHHHHHHhcCceEEEEEecCCC
Confidence 4689999999976421 1223344445667777777543
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.89 E-value=0.13 Score=50.53 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.++++.+|+|+|||....
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997654
No 248
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.88 E-value=0.076 Score=59.72 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-ccccccCCccEEE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GIDip~v~~VI 331 (529)
.+.+++|.++|+.-+.+.++.+++ .|+++..+||+++..+|.++++.+.+|+.+|+|+|.+. ...+..+++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 355799999999999888877765 47899999999999999999999999999999999754 4457788899888
Q ss_pred Ee
Q 009675 332 HF 333 (529)
Q Consensus 332 ~~ 333 (529)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 43
No 249
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.84 E-value=0.11 Score=51.26 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHHHc---C---CCEEEEcCCCchHHHHHHHHHhc
Q 009675 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPALA 76 (529)
Q Consensus 42 ~Q~~~i~~~l~---g---~dvlv~apTGsGKTl~~~lp~l~ 76 (529)
.|..++..+.+ + -+.+..+|.|+|||.+..+-+-+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 57777666542 2 36789999999999887655443
No 250
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.78 E-value=0.27 Score=50.76 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
..+++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999754
No 251
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.75 Score=48.13 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=66.5
Q ss_pred CEEEEcCCCchHHHHHH-HHH---hcCCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcC
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~---l~~~~~~lVi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (529)
-+++++|||+|||.... +.. +..+.++.++. +.+..+.+|...... .+++..... .
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------~----------- 287 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------D----------- 287 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------H-----------
Confidence 36789999999996544 332 22344555544 556666555555432 343321100 0
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC----CCCCEEEEeecC
Q 009675 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (529)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~----~~~~ii~lSAT~ 203 (529)
...+.........++|+||=+-.... -......|..+.+.. |...++.++||.
T Consensus 288 -------------------~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 288 -------------------IKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------------------HHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 01111111124578899997665321 123345555555543 334578999999
Q ss_pred ChhHHHHHHHHhc
Q 009675 204 APKVQKDVMESLC 216 (529)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (529)
.......+.....
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9877666666553
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.51 Score=48.78 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=30.7
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHh
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l 215 (529)
..++|+||++-.... + ......+..+.... +...++.++||.......++...+
T Consensus 215 ~~DlVLIDTaG~~~~---d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---D-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcc---c-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 468899999965321 0 11112333332221 223488999999888777665544
No 253
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.72 E-value=0.14 Score=43.96 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (529)
+++.+|.|+|||.....
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58899999999975543
No 254
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.64 E-value=0.58 Score=48.52 Aligned_cols=56 Identities=27% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 46 ~i~~~l~-----g~dvlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
-++.++. |.-+++.+++|+|||...+ +... ..++.+++++-..+ ..|...+..+++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcC
Confidence 4455554 3557889999999996432 3221 23567888875433 244444445544
No 255
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.60 E-value=0.18 Score=54.23 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEcCCCchHHHHHHHHHh----c---CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 41 ~~Q~~~i~~~l-----~g----~dvlv~apTGsGKTl~~~lp~l----~---~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
|+|+-++..++ .| +.+++..|=|.|||......++ . .+..++++++++.-+....+.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 56776666665 22 4688999999999964432222 1 2567899999999999888877764
No 256
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.60 E-value=0.67 Score=50.49 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=74.5
Q ss_pred HhcCCceEEEEeCCcccHHHHHHHHHhCCC-------ceEEecCCCCHHHHHHHHHHHh----cCCCeEEEEe--Ccccc
Q 009675 254 KANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSRKQVVVAT--VAFGM 320 (529)
Q Consensus 254 ~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT--~a~~~ 320 (529)
..-+ +.+++|.+|.+-...+.+...+.|+ +.+++-..-+ -+++++.|. .|.--+|.|- --+++
T Consensus 626 ~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSE 701 (821)
T KOG1133|consen 626 NAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSE 701 (821)
T ss_pred hhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccc
Confidence 3345 5689999999999999998887665 3344444333 355666665 3565677665 45789
Q ss_pred ccccCC--ccEEEEeCCCCC--------------------------------HHHHHHHHcccCCCCCCceEEEEEe
Q 009675 321 GIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 321 GIDip~--v~~VI~~~~p~s--------------------------------~~~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
|||..| .|.||..++|.. +...-|-+|||-|.-+.=.++++++
T Consensus 702 GINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 702 GINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 999987 689999998851 2234589999999877666666655
No 257
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.59 E-value=0.26 Score=54.96 Aligned_cols=76 Identities=26% Similarity=0.251 Sum_probs=64.2
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
+.++||.++....+.++.+.|++. | -.+..||+++++.+|.+...+..+|+.+|+|.|-.+-. .=+++...||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 556999999999999999999875 4 67999999999999999999999999999999975433 4456777777655
No 258
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.58 E-value=1 Score=51.15 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--HHHhc-CCCeEEEeCcHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~~L~~ 92 (529)
.|++.|++++..++.+ +-+++.++.|+|||.... .-++. .+..+++++||---+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAE 410 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHH
Confidence 4899999999999875 556889999999995432 11222 3678899999965543
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.62 Score=48.19 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
.++++-+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 46999999999999753
No 260
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.54 E-value=0.027 Score=60.52 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=46.2
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (529)
.+++++||||||||..+.+|.+.. .+.+||.-|--+|.......+++.|-++..++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 369999999999999999998875 56788888999999888888887776555554
No 261
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.54 E-value=0.83 Score=47.71 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
..+++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999753
No 262
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.31 Score=53.53 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~ 208 (529)
+...+|||||||.+.. .....|....+..+...++++++|-...+.
T Consensus 118 g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4568999999999863 223444444444444445556666544443
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=94.50 E-value=0.32 Score=47.02 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=24.4
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChh
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 206 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~ 206 (529)
.++++||++|.+..... .. ..|-.+.+.+. +-..+++|+|.+|.
T Consensus 98 ~d~LiiDDi~~~~~~~~-~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-WE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred CCEEEEechhhhcCChH-HH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 57899999998753211 11 22333433332 23457777776654
No 264
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=1.5 Score=47.22 Aligned_cols=55 Identities=27% Similarity=0.202 Sum_probs=31.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHh
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l 215 (529)
...++|+||.+-.... + ......|..+........+++++++........+.+.+
T Consensus 427 ~~~DLVLIDTaG~s~~---D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR---D-RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred ccCCEEEecCCCcchh---h-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 3578999999976422 1 11123344444444455678888887765555554443
No 265
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.45 E-value=0.69 Score=46.70 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=24.4
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
..+++||||+|.+.. ......|..+.+..+..-.+.+|++...
T Consensus 100 ~~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 357899999998732 1122345555555554334555555433
No 266
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.35 E-value=0.42 Score=50.84 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=25.4
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
..++++|||+|.+..+...-...+..+..+.. .+. .+++|++.+|..
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~ 248 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQD 248 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHH
Confidence 47899999999987543222222222333322 234 455666655543
No 267
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.32 E-value=1.1 Score=44.32 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhc
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
...++++||-+-+... -......+..+.+.. |...++.++||........+.+.+.
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 4589999999977432 123344555554433 3344678999988766665666543
No 268
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.32 E-value=0.45 Score=50.31 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEecc-CccHHHHHHHHHHhh
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSS-TQTMQVKTKIYEDLD 125 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~~L~~q~~~~l~~~gi~~~~~~~-~~~~~~~~~~~~~~~ 125 (529)
.=+++.|+||.|||...+ +. ++..+..+++++ |...|+...... ..+++...+.. .....+...+.....
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLAS--KSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 445778899999996433 22 123466778887 334443332221 13343322222 222222222221111
Q ss_pred cCCCcccEEEeCcccccChhhHHHHHhhhcc-CCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhC------CCCCEE
Q 009675 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL------PDVPIL 197 (529)
Q Consensus 126 ~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~------~~~~ii 197 (529)
.- ....+.+.-...+............... +.+++||||=.|.+.. -+.+ .+..+..+.+.+ -++|++
T Consensus 273 ~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~---~~~~~~~i~~~Lk~lAke~~i~Vi 348 (421)
T TIGR03600 273 RL-SEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRD---RNEELGGISRGLKALAKELDVPVV 348 (421)
T ss_pred HH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC---HHHHHHHHHHHHHHHHHHhCCcEE
Confidence 11 0123322221112222333333333322 2589999999998864 2222 223333332222 268888
Q ss_pred EEeec
Q 009675 198 ALTAT 202 (529)
Q Consensus 198 ~lSAT 202 (529)
++|-.
T Consensus 349 ~lsQl 353 (421)
T TIGR03600 349 LLAQL 353 (421)
T ss_pred Eeccc
Confidence 88754
No 269
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.29 E-value=0.2 Score=62.41 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH------HHHHhc-CCCeEEEeCcHHHHHHHHHHHHHHcCCcee
Q 009675 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~------~lp~l~-~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~ 106 (529)
..|++.|++++..++.+ +-+++.++.|+|||... +.-+.. .+..++.++||-.-+ ..|+..|+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCchH
Confidence 36899999999999876 44577899999999754 111222 256788899995544 44555565543
No 270
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.26 E-value=0.22 Score=51.55 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
+...++||||+|.+.... ...|.......|..-.+.+++|-
T Consensus 118 ~~~kviIIDEa~~l~~~a------~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS------FNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHHH------HHHHHHHHhcCCCCeEEEEEcCC
Confidence 346799999999987522 23344444444444344555443
No 271
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.24 E-value=0.27 Score=47.07 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=28.4
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh---HHHHHHHHhc
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK---VQKDVMESLC 216 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~---~~~~i~~~l~ 216 (529)
..++++||..|.+.....--..-+..+..+... +.++|+.|..++.. ...++...+.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhhhHh
Confidence 478999999999865211001112222333322 55666555555543 2345555553
No 272
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.22 E-value=2.3 Score=49.61 Aligned_cols=57 Identities=26% Similarity=0.150 Sum_probs=42.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--HHHhc-CCCeEEEeCcHHHHHH
Q 009675 35 GHAQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~d-vlv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~~L~~ 92 (529)
|+ .|++.|.+++..++.+++ +++.++.|+|||.... .-++. .+..+++++||---+.
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~ 404 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAE 404 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHH
Confidence 44 599999999999998765 5789999999996522 11222 3678999999965543
No 273
>PRK08760 replicative DNA helicase; Provisional
Probab=94.20 E-value=0.21 Score=53.64 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=66.5
Q ss_pred CEEEEcCCCchHHHHHH-HH--H-hcCCCeEEEeCcHHHHHHHHHHHHHHc--CCceeEecc-CccHHHHHHHHHHhhcC
Q 009675 55 DCFCLMPTGGGKSMCYQ-IP--A-LAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLSS-TQTMQVKTKIYEDLDSG 127 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp--~-l~~~~~~lVi~P~~~L~~q~~~~l~~~--gi~~~~~~~-~~~~~~~~~~~~~~~~~ 127 (529)
=+++.|+||.|||...+ +. + ...+..+++++.--+ ..|.+.++... ++....+.. .....+...+......-
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs-~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l 309 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKML 309 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC-HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35667899999996443 21 1 223556777764322 23445555442 233222222 22232222222211111
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCC-CCHH-----HHHHHHHHHHhCCCCCEEEEee
Q 009675 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-----SYRKLSSLRNYLPDVPILALTA 201 (529)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~-~fr~-----~y~~l~~l~~~~~~~~ii~lSA 201 (529)
....+.+....-+.-......+........+++||||=.+.+..-+. +-|. ..+.|+.+-+.+ ++|++++|-
T Consensus 310 -~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~lsQ 387 (476)
T PRK08760 310 -KETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALSQ 387 (476)
T ss_pred -hcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEeec
Confidence 11334332222222233444444444445689999999998864332 1121 112233332222 688888873
No 274
>PRK05748 replicative DNA helicase; Provisional
Probab=94.18 E-value=0.24 Score=52.79 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCccHHHHHHHHHHhhc
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~~~~ 126 (529)
.=+++.|+||.|||...+ +. +...+..+++++.- .-..|.+.++.. .++....+ .+.....+...+......
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 282 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGS 282 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 346778899999995433 21 12235566676632 222333444322 12322211 122222222222222211
Q ss_pred CCCcccEEEe-CcccccChhhHHHHHhhhccC-CccEEEEecccccccCCCCCHHHHHHHHHHHHhC------CCCCEEE
Q 009675 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILA 198 (529)
Q Consensus 127 ~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~-~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~------~~~~ii~ 198 (529)
.. ...+.+. +|. +........+.+..... .+++||||=.|.+..-+.........+..+.+.+ -++|+++
T Consensus 283 l~-~~~~~i~d~~~-~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~ 360 (448)
T PRK05748 283 LS-DAPIYIDDTPG-IKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIA 360 (448)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 11 1223222 222 22223444444444333 6899999999998543321011122333333322 2688888
Q ss_pred EeecC
Q 009675 199 LTATA 203 (529)
Q Consensus 199 lSAT~ 203 (529)
+|-..
T Consensus 361 lsQln 365 (448)
T PRK05748 361 LSQLS 365 (448)
T ss_pred ecccC
Confidence 87653
No 275
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.49 Score=51.05 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQIP 73 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (529)
+.+++.||.|+|||.++.+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36889999999999776543
No 276
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.4 Score=51.87 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=26.6
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
.++..++||||+|.++.- ..+.|.+..+..|..-+++|.+|-+
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECCh
Confidence 356789999999998752 2345555556655444444444543
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.01 E-value=0.5 Score=46.43 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-+++.||+|+|||....
T Consensus 45 ~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 45 FILITGEVGAGKTTLIR 61 (269)
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47899999999997654
No 278
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.98 E-value=0.048 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.4
Q ss_pred CEEEEcCCCchHHHHHHHHHh
Q 009675 55 DCFCLMPTGGGKSMCYQIPAL 75 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l 75 (529)
++++.+|+|.|||..+.+-+-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 689999999999976554443
No 279
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.43 Score=51.12 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.2
Q ss_pred EEEEcCCCchHHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (529)
+++.||+|+|||....+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976543
No 280
>PRK05595 replicative DNA helicase; Provisional
Probab=93.95 E-value=0.26 Score=52.47 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=67.2
Q ss_pred EEEEcCCCchHHHHHH-HH---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecc-CccHHHHHHHHHHhhcCC
Q 009675 56 CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~~~~~~~~~~~~~~~~~ 128 (529)
+++.|.||.|||...+ +. +...+..+++++.-- =..|.+.++-. .+++...+.. .....+...+......-
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l- 281 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPL- 281 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH-
Confidence 4568899999996543 22 223466777776531 12333334322 2344332222 22222322222222111
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC------CCCCEEEEeec
Q 009675 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALTAT 202 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~------~~~~ii~lSAT 202 (529)
....+.+--+.-+.-......+.+......+++||||=.|.+..-+. ....+..+..+.+.+ -++|++++|-.
T Consensus 282 ~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~-~~~r~~~v~~is~~LK~lAke~~i~vi~lsQL 360 (444)
T PRK05595 282 AAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG-SESRQQEVSEISRSIKALAKEMECPVIALSQL 360 (444)
T ss_pred hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC-CccHHHHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 11233222111122123444444444445699999999999864321 122223333332222 17888888754
No 281
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.34 Score=53.09 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=27.8
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (529)
.+...++||||+|.++.- ..+.|.......|..-++.+.+|-+..+..
T Consensus 117 ~~~~kViIIDE~~~Lt~~------a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG------AFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred cCCeEEEEEECcccCCHH------HHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 345789999999998752 224444444444444355555554444333
No 282
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.2 Score=57.07 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=29.1
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
+..+++||||+|.|..-+ .+.|.++++..|..-+++|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 457899999999997633 35666666766655455555454444
No 283
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.92 E-value=0.047 Score=59.91 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (529)
.++++.||||||||..+.+|.+.. ++.+||+=|--++........++.|-++..++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 578999999999999999999876 6788888999999999888888888776666543
No 284
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.91 E-value=0.14 Score=57.08 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-ccccccCCccEEE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GIDip~v~~VI 331 (529)
.+.+++|.++|+.-++++++.+++ .|+++..+||+++.++|..+++...+|+.+|+|+|.+. ...++..++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 355799999999999988877765 37999999999999999999999999999999999765 3457778888888
Q ss_pred EeC
Q 009675 332 HFN 334 (529)
Q Consensus 332 ~~~ 334 (529)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 433
No 285
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.88 E-value=0.29 Score=59.87 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEe
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (529)
.|++.|++++..++.+ +-+++.+..|+|||.... +.++. .+..++.++||-.-+. .|++.|+.+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~TI 1042 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQTL 1042 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhhH
Confidence 5899999999999976 456789999999996532 22221 1456888899966554 455566655433
No 286
>PRK08840 replicative DNA helicase; Provisional
Probab=93.88 E-value=0.72 Score=49.31 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCEEEEcCCCchHHHHHH-H---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEe-ccCccHHHHHHHHHHhhc
Q 009675 54 RDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~-~~~~~~~~~~~~~~~~~~ 126 (529)
.=+++.|.||.|||...+ + .+...+..+++++.--+ ..|.+.++-. .++...-+ .+.....+...+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 335667899999996542 1 12233566777764322 2344444332 23332222 222333333333222111
Q ss_pred CCCcccEEEeCcccccC-hhhHHHHHhhhcc-CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC------CCCEEE
Q 009675 127 GKPSLRLLYVTPELTAT-PGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP------DVPILA 198 (529)
Q Consensus 127 ~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~------~~~ii~ 198 (529)
-.....+ |..+.--.| ........+.... +.+++||||=.|.+..-+.. ......+..+.+.+. ++|+++
T Consensus 297 l~~~~~l-~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~-~~r~~ei~~isr~LK~lAkel~ipVi~ 374 (464)
T PRK08840 297 LMEKKNM-YIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALS-DNRTLEIAEISRSLKALAKELNVPVVA 374 (464)
T ss_pred HHhcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0001122 222211112 2233333333322 35899999999998643421 111223333322221 688888
Q ss_pred Ee
Q 009675 199 LT 200 (529)
Q Consensus 199 lS 200 (529)
+|
T Consensus 375 Ls 376 (464)
T PRK08840 375 LS 376 (464)
T ss_pred EE
Confidence 87
No 287
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.87 E-value=0.18 Score=56.18 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
+..+++||||+|.|+.-. .+.|.+..+..|..-+++|+.|-...+
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 457899999999997522 345555566656554556666654443
No 288
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.87 E-value=2.6 Score=53.04 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=102.6
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHH--HHHhc-CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccC
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSST 111 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~--lp~l~-~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~ 111 (529)
.+.+.|++++..++.. +-.++.++.|+|||.... +-++. .+..+++++|+-.-+.. |.+ .|+.+..++
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~----L~e~~g~~A~Ti~-- 502 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQE----LRQKIPRLASTFI-- 502 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH----HHHHhcchhhhHH--
Confidence 4889999999999876 456789999999996432 12222 37789999999765433 333 233322211
Q ss_pred ccHHHHHHHHHHhhcCCCcccEEEeCcccccC-hhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHh
Q 009675 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (529)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~ 190 (529)
.....+..+ +...| .+|+ ........-++||||||-.++. ..+..+.+.
T Consensus 503 -------~~l~~l~~~-----------~~~~tv~~fl---~~~~~l~~~~vlIVDEAsMl~~---------~~~~~Ll~~ 552 (1960)
T TIGR02760 503 -------TWVKNLFND-----------DQDHTVQGLL---DKSSPFSNKDIFVVDEANKLSN---------NELLKLIDK 552 (1960)
T ss_pred -------HHHHhhccc-----------ccchhHHHhh---cccCCCCCCCEEEEECCCCCCH---------HHHHHHHHH
Confidence 111111000 01111 1121 1111123457999999999875 233334432
Q ss_pred C--CCCCEEEEeec------CChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHH-HHhc-CCce
Q 009675 191 L--PDVPILALTAT------AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKAN-GDTC 260 (529)
Q Consensus 191 ~--~~~~ii~lSAT------~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~-l~~~-~~~~ 260 (529)
. .+.++|++-=+ -+..+..++.. -+++.. .+.......+-. .+...+ ....+..+.+. +.-. ....
T Consensus 553 a~~~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~-~l~~i~rq~~~v-~i~~~~-~~~r~~~ia~~y~~L~~~r~~ 628 (1960)
T TIGR02760 553 AEQHNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTY-AWVDTKQQKASV-EISEAV-DKLRVDYIASAWLDLTPDRQN 628 (1960)
T ss_pred HhhcCCEEEEEcChhhcCccccchHHHHHHH-CCCcEE-EeecccccCcce-eeeccC-chHHHHHHHHHHHhcccccCc
Confidence 2 35667766433 12245554443 232211 111111111111 111111 12334344333 2222 3445
Q ss_pred EEEEeCCcccHHHHHHHHHh
Q 009675 261 AIVYCLERTTCDELSAYLSA 280 (529)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~ 280 (529)
++|+..+.++...|....+.
T Consensus 629 tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHH
Confidence 89999999888888876654
No 289
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.81 Score=48.57 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=37.8
Q ss_pred hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHH--HHHHHHHhC----CCCCEEEEeecCChhHHH
Q 009675 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR--KLSSLRNYL----PDVPILALTATAAPKVQK 209 (529)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~--~l~~l~~~~----~~~~ii~lSAT~~~~~~~ 209 (529)
+...|......+-...|.|||.|.+...-..--..|. .|..+.... ++-.||.+-||--|+...
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 3444544444455788999999999652211111132 244443332 367899999998776544
No 290
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.27 Score=54.14 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
++..++||||+|.++.-+ ...|.+..+..|+.-.++|++|-....
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 457899999999987522 344555555555433555555654443
No 291
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.79 E-value=1.1 Score=47.60 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHH-HHHHHh--cCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 46 AIQAVLS-----GRDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 46 ~i~~~l~-----g~dvlv~apTGsGKTl~-~~lp~l--~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
-++.++. |.-+++.+++|+|||.. .++..- ..+.++++++-..+ ..|...+..++|.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 3455554 35578899999999953 333222 24678888885433 3455555555553
No 292
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.75 E-value=0.58 Score=49.96 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999643
No 293
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.68 Score=46.82 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=38.5
Q ss_pred ccCCCCCCChhHHHHHHHHHhcC--CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHH
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg--~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L 90 (529)
....+.+.+-.++..+.+++.-- ..+|--++.-.|+ -.+-|++-+|+|+||||++-.-|-.... +.+=+.--+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSEl 221 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSEL 221 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHH
Confidence 33445555555555555555422 2222222221111 2378999999999999865333333232 3333333455
Q ss_pred HH
Q 009675 91 ME 92 (529)
Q Consensus 91 ~~ 92 (529)
++
T Consensus 222 Vq 223 (406)
T COG1222 222 VQ 223 (406)
T ss_pred HH
Confidence 44
No 294
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.72 E-value=0.35 Score=53.61 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
+...++||||||.+..- ....|....+..|..-+++|.++-+
T Consensus 120 ~~~KViIIDEad~Lt~~------a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA------AFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred CCceEEEEECccccCHH------HHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 45689999999998642 2244444555544444455555533
No 295
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.56 Score=49.66 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=23.5
Q ss_pred CEEEEcCCCchHHHHHH-HHHhcCCCeEEEeCcH
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSPL 87 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l~~~~~~lVi~P~ 87 (529)
.+++.+|.|+|||.-+. +..-..-+-+=+++|.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 58899999999995444 3333345667777885
No 296
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.65 E-value=0.3 Score=49.53 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=33.6
Q ss_pred ccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 155 ~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
..+..+++|||+||.|..-. -+.|-+..+.-|.--+++|+++.+..+...|.
T Consensus 104 ~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 34668899999999997522 24555555655555567777776655544433
No 297
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.62 E-value=0.22 Score=53.68 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHHHHHHc-----CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHH
Q 009675 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (529)
Q Consensus 45 ~~i~~~l~-----g~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (529)
..++.++. |.-+++.+|+|+|||...+ .-++.++.++++++-- +-..|...++.++|+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e-Es~~~i~~~~~~lg~~~~---------- 318 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE-ESRAQLLRNAYSWGIDFE---------- 318 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee-CCHHHHHHHHHHcCCChH----------
Confidence 34555554 4568899999999995432 2334556788888843 444677777777765321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
.....+ .+.++..-|.......++..+.........+++|||=...+.
T Consensus 319 -----~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 319 -----EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred -----HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 111122 255555556555445566677666666678899999887653
No 298
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.58 E-value=0.42 Score=45.60 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.||+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 299
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.57 E-value=0.64 Score=48.91 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
..+++.||+|+|||...
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35789999999999643
No 300
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.50 E-value=0.65 Score=50.23 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997543
No 301
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.83 Score=45.05 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=61.4
Q ss_pred CEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccE
Q 009675 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (529)
-+++-+|+|+|||. +.-++.. ...+.+-+.+-.|+..|.-.-.+
T Consensus 168 giLLyGPPGTGKSY--LAKAVATEAnSTFFSvSSSDLvSKWmGESEk--------------------------------- 212 (439)
T KOG0739|consen 168 GILLYGPPGTGKSY--LAKAVATEANSTFFSVSSSDLVSKWMGESEK--------------------------------- 212 (439)
T ss_pred eEEEeCCCCCcHHH--HHHHHHhhcCCceEEeehHHHHHHHhccHHH---------------------------------
Confidence 58899999999995 4344432 23556656666666543322111
Q ss_pred EEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHH-HHHHH-HHHHhCC-----CCCEEEEeecCChh
Q 009675 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS-YRKLS-SLRNYLP-----DVPILALTATAAPK 206 (529)
Q Consensus 134 l~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~-y~~l~-~l~~~~~-----~~~ii~lSAT~~~~ 206 (529)
+...|..+...+..+.|.|||+|.+..-+.+-... -+++. ++.-+.. +--++.|-||-.|.
T Consensus 213 ------------LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 213 ------------LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred ------------HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 12233334444567889999999886533222111 12221 1111111 34588999998887
Q ss_pred HHHHHH
Q 009675 207 VQKDVM 212 (529)
Q Consensus 207 ~~~~i~ 212 (529)
+....+
T Consensus 281 ~LDsAI 286 (439)
T KOG0739|consen 281 VLDSAI 286 (439)
T ss_pred hHHHHH
Confidence 655433
No 302
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.42 E-value=0.33 Score=48.89 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999953
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.64 Score=51.03 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=31.5
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
.+...++||||+|.++.- ..+.|....+..|..-+++|..|-...+...|.
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 356789999999999753 345565566666654455555465554443333
No 304
>CHL00176 ftsH cell division protein; Validated
Probab=93.39 E-value=0.69 Score=51.40 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 305
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.38 E-value=0.73 Score=42.72 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred cCCCEEEEcCCCchHHHHHH-H-HHhc-----------CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-I-PALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-l-p~l~-----------~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~ 118 (529)
.|.-+++.||+|+|||...+ + ..+. .+..++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 34557899999999995432 2 1122 3567888876544 345555665532111 111111
Q ss_pred HHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc-CCccEEEEecccccccCCCCCHHHH----HHHHHHHHhCCC
Q 009675 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSY----RKLSSLRNYLPD 193 (529)
Q Consensus 119 ~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~~fr~~y----~~l~~l~~~~~~ 193 (529)
.... .... ...++..........+..+..+.+.... ..+++||||=...+..-+.+....+ ..|..+.+.+ +
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~-~ 179 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEY-G 179 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHc-C
Confidence 1111 1111 1122221111111123344555555544 5699999999999876544443333 3333333332 4
Q ss_pred CCEEEEee
Q 009675 194 VPILALTA 201 (529)
Q Consensus 194 ~~ii~lSA 201 (529)
+.++++.-
T Consensus 180 ~~vi~v~H 187 (193)
T PF13481_consen 180 VAVILVHH 187 (193)
T ss_dssp -EEEEEEE
T ss_pred CEEEEEEC
Confidence 55555443
No 306
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.33 E-value=0.38 Score=47.59 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcC-------CCeEEEeCcHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALM 91 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~-------~~~~lVi~P~~~L~ 91 (529)
.+|-+|||+|||- ++-.|.. ..++++|+|.+..+
T Consensus 90 ~~VYGPTG~GKSq--LlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ--LLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH--HHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 4678999999994 4444432 56799999987553
No 307
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.38 Score=48.69 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=35.2
Q ss_pred ccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 009675 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 155 ~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
..+..+++|||+||.|..-. -+.|-+..+.-|..-+++|.++.+..+...|..
T Consensus 105 ~~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred ccCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 34568899999999996422 255555666666555677777766665554444
No 308
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.23 E-value=0.8 Score=46.57 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=24.3
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
...+|||||+|.+... ....|..+....++...+.++++.
T Consensus 125 ~~~vlilDe~~~l~~~------~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 125 DYKTILLDNAEALRED------AQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred CCcEEEEeCcccCCHH------HHHHHHHHHHhccCCCeEEEEeCC
Confidence 3568999999987542 123455555555554455556554
No 309
>PHA02542 41 41 helicase; Provisional
Probab=93.22 E-value=0.75 Score=49.25 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=68.6
Q ss_pred HHHHHHHH-cC---CC-EEEEcCCCchHHHHHHH---HHhcCCCeEEEeC---cHHHHHHHHHHHHHH--cCCceeEecc
Q 009675 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQI---PALAKPGIVLVVS---PLIALMENQVIGLKE--KGIAGEFLSS 110 (529)
Q Consensus 44 ~~~i~~~l-~g---~d-vlv~apTGsGKTl~~~l---p~l~~~~~~lVi~---P~~~L~~q~~~~l~~--~gi~~~~~~~ 110 (529)
...+..++ .| .+ +++.|++|.|||...+- -+...+..+++++ |...| +.++.. .++....+..
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql----~~Rl~a~~~~i~~~~l~~ 251 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI----AKRIDANLLDVSLDDIDD 251 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH----HHHHHHHHcCCCHHHHhh
Confidence 44455555 33 33 46678999999965442 2223466677776 34344 334322 2333322221
Q ss_pred CccHHHHHHHHHHhhcCCCcccEE-EeCcc-cccChhhHHHHHhhhccC--CccEEEEecccccccC--CCCCHHHHHHH
Q 009675 111 TQTMQVKTKIYEDLDSGKPSLRLL-YVTPE-LTATPGFMSKLKKIHSRG--LLNLVAIDEAHCISSW--GHDFRPSYRKL 184 (529)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ll-~~tpe-~v~t~~~~~~l~~~~~~~--~l~~iViDEaH~~~~~--g~~fr~~y~~l 184 (529)
....+.......+... ...++. +..|. .+....+...+.+..... .+++||||=.+.+..- .......+..+
T Consensus 252 -l~~~~~~~~~~~~~~~-~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei 329 (473)
T PHA02542 252 -LSKAEYKAKMEKLRSK-TQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYV 329 (473)
T ss_pred -cCHHHHHHHHHHHHHH-hCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHH
Confidence 2222222222222111 012222 22222 222223333333333222 3899999999988521 00111122333
Q ss_pred HHHHHhCC------CCCEEEEeec
Q 009675 185 SSLRNYLP------DVPILALTAT 202 (529)
Q Consensus 185 ~~l~~~~~------~~~ii~lSAT 202 (529)
..+.+.+. ++|++++|-.
T Consensus 330 ~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 330 KAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEee
Confidence 33322221 6888888755
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.21 E-value=2.6 Score=42.74 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHh-------CCCCCEEEEeecCChhHHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-------~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
..+++|+||=+-+...- ...+..|..+.+. .|.-.++.++||...+.......
T Consensus 195 ~~~D~ViIDTaGr~~~~----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNK----TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 45789999999875421 1122334443332 23445789999977665554433
No 311
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.19 E-value=2.6 Score=40.59 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCC
Q 009675 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~-~l--p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (529)
|.-+++.+++|+|||... ++ -.+..+.++++++--.. ..+.++.+.++|+...- .+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~~~~~---------------~~~~g~- 87 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKIDISD---------------FFLWGY- 87 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCCChhH---------------HHhCCC-
Confidence 456788999999999533 22 23455777888775433 35566667776643211 001111
Q ss_pred cccEEEeCcccccC-----hhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 130 SLRLLYVTPELTAT-----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 130 ~~~ll~~tpe~v~t-----~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
..++-..++.+.. ...+..+.........+++||||.-.+..
T Consensus 88 -l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 88 -LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred -ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 2222222222211 23444444444445678999999986543
No 312
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.17 E-value=0.34 Score=47.67 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=31.0
Q ss_pred cCCCEEEEcCCCchHHHH-HHHH--HhcCCCeEEEeCc---HHHHHHHHHHHHHHcCC
Q 009675 52 SGRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSP---LIALMENQVIGLKEKGI 103 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~-~~lp--~l~~~~~~lVi~P---~~~L~~q~~~~l~~~gi 103 (529)
.|.-++|.+|+|+|||.. .++. .+..+..+++++- ...+..+.......+|.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 346678999999999953 3332 2345778888883 23333333333444443
No 313
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.14 E-value=1.7 Score=41.83 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=32.3
Q ss_pred cCCCEEEEcCCCchHHHH-HHH-H-HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 52 SGRDCFCLMPTGGGKSMC-YQI-P-ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~-~~l-p-~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
.|.-+++.+++|+|||.. .++ . .+..+..+++++.... ..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHhCC
Confidence 467788999999999965 232 2 3345677888874432 2444555555543
No 314
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.12 E-value=0.88 Score=50.78 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHH---HhcCC--CeEEEeCcHHHHHHHHHHH----HHHcCC
Q 009675 35 GHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAKP--GIVLVVSPLIALMENQVIG----LKEKGI 103 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~--dvlv~apTGsGKTl~~~lp---~l~~~--~~~lVi~P~~~L~~q~~~~----l~~~gi 103 (529)
..+....-|.+.+..++.++ -+++.|.-|=|||.+.=+. +.... ..++|.+|+.+=++...+. |..+|.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 33444445555666666653 4678999999999654322 22223 4899999998766554433 333443
Q ss_pred ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHH
Q 009675 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (529)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~ 183 (529)
+-........ .-........+|-|..|.... . .-+++|||||=.+-- ..
T Consensus 291 ~~~v~~d~~g--------~~~~~~~~~~~i~y~~P~~a~-~-------------~~DllvVDEAAaIpl---------pl 339 (758)
T COG1444 291 KRKVAPDALG--------EIREVSGDGFRIEYVPPDDAQ-E-------------EADLLVVDEAAAIPL---------PL 339 (758)
T ss_pred cccccccccc--------ceeeecCCceeEEeeCcchhc-c-------------cCCEEEEehhhcCCh---------HH
Confidence 3211110000 000111123557777776442 1 147899999988642 33
Q ss_pred HHHHHHhCCCCCEEEEeecCC
Q 009675 184 LSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 184 l~~l~~~~~~~~ii~lSAT~~ 204 (529)
|..+... .+.++||.|..
T Consensus 340 L~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 340 LHKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred HHHHHhh---cCceEEEeeec
Confidence 4444443 46788999964
No 315
>PRK06904 replicative DNA helicase; Validated
Probab=93.11 E-value=2.1 Score=45.97 Aligned_cols=142 Identities=21% Similarity=0.238 Sum_probs=64.1
Q ss_pred CEEEEcCCCchHHHHHH-H---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecc--CccHHHHHHHHHHhhc
Q 009675 55 DCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS--TQTMQVKTKIYEDLDS 126 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~--~~~~~~~~~~~~~~~~ 126 (529)
=+++.|.||.|||...+ + .+...+..+++++.- .=..|.+.++-. .+++...+.. .....+...+......
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~ 301 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGM 301 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34567899999996432 1 122235567777643 222344444333 2333332222 2333333332222211
Q ss_pred CCCcccEEEeCcccccCh-hhHHHHHhhhcc-CCccEEEEecccccccCCC-CCHHHHHHHHHHHHhC------CCCCEE
Q 009675 127 GKPSLRLLYVTPELTATP-GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYL------PDVPIL 197 (529)
Q Consensus 127 ~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~-~fr~~y~~l~~l~~~~------~~~~ii 197 (529)
-..... +|..+..-.|. .......+.... +.+++||||=.+.+..-+. +-|. ..++.+.+.+ -++|++
T Consensus 302 l~~~~~-l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~--~ei~~isr~LK~lAkel~ipVi 378 (472)
T PRK06904 302 FKQKPN-LYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRT--LEIAEISRSLKALAKELKVPVV 378 (472)
T ss_pred HhcCCC-EEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHH--HHHHHHHHHHHHHHHHhCCeEE
Confidence 100111 23322111222 233333333322 3589999999998864332 2121 2233332222 178888
Q ss_pred EEe
Q 009675 198 ALT 200 (529)
Q Consensus 198 ~lS 200 (529)
++|
T Consensus 379 ~ls 381 (472)
T PRK06904 379 ALS 381 (472)
T ss_pred EEE
Confidence 887
No 316
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.10 E-value=0.54 Score=51.85 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=28.2
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
.+.+.++||||+|.++.-. ++.|.+..+..|...+++|.+|-+..+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchhh
Confidence 3457899999999987522 344444445545444555555654443
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.03 E-value=0.41 Score=48.94 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=32.4
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
.+..+++|||+||.|..-. -+.|-+..+.-|.--+++|+++-+..+...|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~ 180 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA------ANALLKTLEEPPPGTVFLLVSARIDRLLPTIL 180 (342)
T ss_pred cCCceEEEEechhhcCHHH------HHHHHHHhcCCCcCcEEEEEECChhhCcHHHH
Confidence 4567899999999996522 24555555665555566677666555444333
No 318
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.02 E-value=0.092 Score=58.38 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=47.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEecc
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (529)
.++++.||||||||..+.+|.+.. .+.+||+=|--++........++.|-.+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 589999999999999999998876 678888889999988877777777765555443
No 319
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.00 E-value=0.47 Score=47.96 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHH-cC--CCEEEEcCCCchHHHHHHHHHh
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVL-SG--RDCFCLMPTGGGKSMCYQIPAL 75 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l-~g--~dvlv~apTGsGKTl~~~lp~l 75 (529)
+.|..++|-+++- .|.-.+..++ ++ ..+++++|.|+|||..+-+-+.
T Consensus 135 ktL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred chHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 3455555544332 2333343333 34 3789999999999975544443
No 320
>PHA02533 17 large terminase protein; Provisional
Probab=92.97 E-value=0.36 Score=52.42 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh-----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l-----~~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.|+|+|++.+..+..++-.++..+=..|||.+...-++ ..+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47889999999886667677888899999976543222 2356899999999888877766664
No 321
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.93 E-value=0.16 Score=56.99 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.+++-|++++.. ....++|.|+.|||||.+.. +.-|. ....+|+++.|+..+.+..+++..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 378999999875 35789999999999997643 22222 145699999999999998888876
No 322
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.93 E-value=0.86 Score=50.62 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
+...++||||+|.++. .....|.+.....|..-.++|+.|-...+
T Consensus 118 gk~KVIIIDEad~Ls~------~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK------SAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred CCcEEEEEECccccCH------HHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 4578999999998764 22344555555555443445555544443
No 323
>PRK09165 replicative DNA helicase; Provisional
Probab=92.87 E-value=0.44 Score=51.49 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=55.1
Q ss_pred CEEEEcCCCchHHHHHH-H--HH-hc--------------CCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEecc-Ccc
Q 009675 55 DCFCLMPTGGGKSMCYQ-I--PA-LA--------------KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQT 113 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-l--p~-l~--------------~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~~ 113 (529)
=+++.|+||.|||...+ + -+ .. .+..+++++.-- =..|.+.++.. .+++...+.. ...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM-s~~ql~~R~la~~s~v~~~~i~~~~l~ 297 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM-SAEQLATRILSEQSEISSSKIRRGKIS 297 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 35678899999996433 1 11 11 135677776432 22444444433 2443322222 233
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC
Q 009675 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~ 173 (529)
..+...+......-. ...+.+-..--+.-......+.+......+++||||=.|.+..-
T Consensus 298 ~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~ 356 (497)
T PRK09165 298 EEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGS 356 (497)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCC
Confidence 333333332222111 12333222111222233334444444456899999999988643
No 324
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.87 E-value=0.57 Score=49.76 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccC-ccHHHHHHHHHHhhc
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST-QTMQVKTKIYEDLDS 126 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~~-~~~~~~~~~~~~~~~ 126 (529)
.=+++.|+||+|||...+ +. +...+..+++++.-- =..+.+.++.. .++....+..+ ....+...+......
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm-~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~ 274 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM-SAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGK 274 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC-CHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHH
Confidence 345778899999996433 21 122355677776321 12233333332 23332222111 222222222211111
Q ss_pred CCCcccEEE-eCcccccChhhHHHHHhhhccCCccEEEEecccccccCCC-CCH-HHH----HHHHHHHHhCCCCCEEEE
Q 009675 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSY----RKLSSLRNYLPDVPILAL 199 (529)
Q Consensus 127 ~~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~-~fr-~~y----~~l~~l~~~~~~~~ii~l 199 (529)
-. ...+.+ -+|. +.-......+........+++||||=.+.+..-+. +-| ..+ ..|..+-..+ ++|++++
T Consensus 275 l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~-~i~vi~l 351 (434)
T TIGR00665 275 LS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL-NVPVIAL 351 (434)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEEEE
Confidence 11 122222 2222 11122334444444444589999999988853221 112 112 1222222222 6888887
Q ss_pred eec
Q 009675 200 TAT 202 (529)
Q Consensus 200 SAT 202 (529)
|-.
T Consensus 352 sql 354 (434)
T TIGR00665 352 SQL 354 (434)
T ss_pred ecc
Confidence 754
No 325
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.86 E-value=0.44 Score=45.60 Aligned_cols=130 Identities=25% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCchHHHH-HH--HHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCC
Q 009675 53 GRDCFCLMPTGGGKSMC-YQ--IPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~-~~--lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (529)
|.-+++.+|+|+|||.- .+ ...+.. +..+++++- .+-..+..+.+.++|.... .....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------------HHhhcC-
Confidence 46788999999999954 33 345566 778888873 2333566666777664221 111111
Q ss_pred CcccEEEeCccccc----C-hhhHHHHHhhhccCCccEEEEecccccccCC--CCCHHHHHHHHHHHHhCCCCCEEEEee
Q 009675 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTA 201 (529)
Q Consensus 129 ~~~~ll~~tpe~v~----t-~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g--~~fr~~y~~l~~l~~~~~~~~ii~lSA 201 (529)
.+.++-..++... . ..+...+.........+++|||-...+.... ..+|..+..+....+.. ++ .+++|+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~-t~llt~ 158 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GV-TTLLTS 158 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TE-EEEEEE
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEE
Confidence 1444444444331 1 2344445444443345899999998883222 12444444444444333 22 344555
Q ss_pred c
Q 009675 202 T 202 (529)
Q Consensus 202 T 202 (529)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 326
>PRK08006 replicative DNA helicase; Provisional
Probab=92.84 E-value=1.3 Score=47.50 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=64.4
Q ss_pred EEEEcCCCchHHHHHH-H--H-HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEec-cCccHHHHHHHHHHhhcCC
Q 009675 56 CFCLMPTGGGKSMCYQ-I--P-ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-l--p-~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (529)
+++.|.+|.|||...+ + - +...+..+++++.-- =..|.+.++-. .++...-+. +..+..+...+......-.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM-~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~ 305 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM-PGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILL 305 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccC-CHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 4567799999996433 1 1 223355677776431 12333333332 233322222 2333333333322221110
Q ss_pred CcccEEEeCcccccCh-hhHHHHHhhhcc-CCccEEEEecccccccCCC-CCHHHHHHHHHHHHhC------CCCCEEEE
Q 009675 129 PSLRLLYVTPELTATP-GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYL------PDVPILAL 199 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~-~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~-~fr~~y~~l~~l~~~~------~~~~ii~l 199 (529)
....+ |..+.--.|. .......+.... +.+++||||=.|.+..-+. +-| ...+..+.+.+ -++|++++
T Consensus 306 ~~~~l-~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r--~~ei~~isr~LK~lAkel~ipVi~L 382 (471)
T PRK08006 306 EKRNM-YIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNR--TLEIAEISRSLKALAKELQVPVVAL 382 (471)
T ss_pred hcCCE-EEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCc--HHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 01222 3222211222 233333333332 3589999999999864321 222 22333332222 17888888
Q ss_pred eec
Q 009675 200 TAT 202 (529)
Q Consensus 200 SAT 202 (529)
|-.
T Consensus 383 sQL 385 (471)
T PRK08006 383 SQL 385 (471)
T ss_pred Eec
Confidence 833
No 327
>PRK05636 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.52 Score=50.92 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCE-EEEcCCCchHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCccHHHHHHHHHHh
Q 009675 54 RDC-FCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDL 124 (529)
Q Consensus 54 ~dv-lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~ 124 (529)
.++ ++.|.||.|||...+ +. +...+..+++++ |..+|+....... .+++...+. +..+..+...+...+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~~~~~~a~ 342 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAWEKLVQRL 342 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 344 668899999995433 22 223355667774 4444544433222 123222222 223333333333222
Q ss_pred hcCCCcccEEEeCcccccC-hhhHHHHHhhhccCCccEEEEecccccccCCC-CCHHHHHHHHHHHHhC------CCCCE
Q 009675 125 DSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYL------PDVPI 196 (529)
Q Consensus 125 ~~~~~~~~ll~~tpe~v~t-~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~-~fr~~y~~l~~l~~~~------~~~~i 196 (529)
..-. ...+. ..+.--.| ........+......+++||||=.|.+..-.. +-|. ..+..+.+.+ -++|+
T Consensus 343 ~~l~-~~~l~-I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~--~ei~~isr~LK~lAkel~ipV 418 (505)
T PRK05636 343 GKIA-QAPIF-IDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQ--QEVSEFSRQLKLLAKELDVPL 418 (505)
T ss_pred HHHh-cCCEE-EECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHH--HHHHHHHHHHHHHHHHhCCeE
Confidence 2111 12222 22211112 22333334443445699999999999864221 1122 2333332222 16788
Q ss_pred EEEee
Q 009675 197 LALTA 201 (529)
Q Consensus 197 i~lSA 201 (529)
+++|-
T Consensus 419 i~lsQ 423 (505)
T PRK05636 419 IAISQ 423 (505)
T ss_pred EEEee
Confidence 88873
No 328
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.70 E-value=0.32 Score=54.28 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC
Q 009675 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (529)
Q Consensus 247 ~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip 325 (529)
..+.+.|++ +..+||.++.+....++.+.|+.. |.++..+|++|++.+|.+.-.+..+|+.+|+|.|-.+-. .=++
T Consensus 236 ~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~ 312 (730)
T COG1198 236 EAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFK 312 (730)
T ss_pred HHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-Cchh
Confidence 334444443 567999999999999999999875 889999999999999999999999999999999964322 2344
Q ss_pred CccEEE
Q 009675 326 DVRLVC 331 (529)
Q Consensus 326 ~v~~VI 331 (529)
+...||
T Consensus 313 ~LGLII 318 (730)
T COG1198 313 NLGLII 318 (730)
T ss_pred hccEEE
Confidence 566665
No 329
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.68 E-value=0.31 Score=56.43 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=64.0
Q ss_pred CceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-ccccccCCccEEEE
Q 009675 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVCH 332 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GIDip~v~~VI~ 332 (529)
+.+++|.++|+.-|.+.++.+++ .++.+..++|+.+.+++.++++.+.+|+.+|||+|..+ ...+...++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 45799999999999999888775 36788899999999999999999999999999999754 44577888888874
No 330
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.67 E-value=0.59 Score=51.75 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=28.4
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
.+...++||||+|.++.- ..+.|.+..+..|+.-+++|..|-+..+
T Consensus 117 ~g~~KV~IIDEah~Ls~~------a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred cCCCEEEEEechHhCCHH------HHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 456889999999998752 2345555556555443455555544433
No 331
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.51 E-value=1.3 Score=48.82 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=27.5
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
.+...++||||+|.++. ...+.|.+..+..|..-+++|.+|-...
T Consensus 130 ~a~~KVvIIDEad~Ls~------~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 130 SARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred cCCcEEEEEEChHhCCH------HHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 34578999999999874 2234555555555544445555554443
No 332
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.35 E-value=1.1 Score=50.95 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
..++++.+|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997643
No 333
>PRK08506 replicative DNA helicase; Provisional
Probab=92.34 E-value=0.65 Score=49.87 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=65.3
Q ss_pred CEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEec-cCccHHHHHHHHHHhhcCC
Q 009675 55 DCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (529)
=+++.|+||.|||...+- -+...+..+++++.- .=..|.+.++-. .+++..-+. +.....+...+......-.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~ 272 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELS 272 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 356778999999964331 222345567777643 222344444433 333332222 2223233222222221111
Q ss_pred CcccEEEeCcc-cccChhhHHHHHhhhcc-CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC------CCCCEEEEe
Q 009675 129 PSLRLLYVTPE-LTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALT 200 (529)
Q Consensus 129 ~~~~ll~~tpe-~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~------~~~~ii~lS 200 (529)
...+. ..+. -+........+.+.... +.+++||||=.+.+..-+. +......+..+.+.+ -++|++++|
T Consensus 273 -~~~l~-I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK~lAkel~ipVi~ls 349 (472)
T PRK08506 273 -KKKLF-VYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLKLLARELDIPIIALS 349 (472)
T ss_pred -cCCeE-EECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 12232 2221 11112233333333322 3589999999998864332 222223333332222 178888887
Q ss_pred ec
Q 009675 201 AT 202 (529)
Q Consensus 201 AT 202 (529)
-.
T Consensus 350 QL 351 (472)
T PRK08506 350 QL 351 (472)
T ss_pred ec
Confidence 44
No 334
>PRK09183 transposase/IS protein; Provisional
Probab=92.32 E-value=1.5 Score=43.16 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.7
Q ss_pred HHcCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEeCcHHHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALME 92 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~~L~~ 92 (529)
+..+.++++.+|+|+|||.....- +...+..++++ +..+|..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 346788999999999999543321 22334455554 4444543
No 335
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.30 E-value=0.098 Score=62.41 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=77.7
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCC-CceEEecCCCC-----------HHHHHHHHHHHhcCCCeEEEEeCccccccccC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip 325 (529)
.-++|+|+..+..+..+.+.+++.+ ..+..+.|.+. +..+.+++..|...++++|++|.+...|+|.+
T Consensus 292 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 292 TLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVP 371 (1606)
T ss_pred hhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchh
Confidence 3468999999999999999888752 22333444321 22356888899999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHcccCCC
Q 009675 326 DVRLVCHFNIPKSMEAFYQESGRAGRD 352 (529)
Q Consensus 326 ~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (529)
.+..|++++.|.....|+|..||+-+.
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccc
Confidence 999999999999999999999999654
No 336
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.29 E-value=0.15 Score=56.64 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccC
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (529)
.++++.||||+|||..+.+|.+.. ++.++|+=|..++..-.....++.|-++..++..
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 589999999999999999999876 6778888899999887777777777666665543
No 337
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=0.31 Score=43.56 Aligned_cols=39 Identities=26% Similarity=0.479 Sum_probs=26.5
Q ss_pred cccChhhHHHHHhhhccCC---ccEEEEecc--------cccccCCCCCH
Q 009675 140 LTATPGFMSKLKKIHSRGL---LNLVAIDEA--------HCISSWGHDFR 178 (529)
Q Consensus 140 ~v~t~~~~~~l~~~~~~~~---l~~iViDEa--------H~~~~~g~~fr 178 (529)
.+.++.+...+......+. +.+++||++ |++..-||+.-
T Consensus 77 tLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~Ip 126 (187)
T COG4185 77 TLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIP 126 (187)
T ss_pred eeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCc
Confidence 5666777777766555444 678999998 45566777653
No 338
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=0.85 Score=47.86 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=26.8
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
.+...++||||+|.+... ....|....+..|...++.+.++-...
T Consensus 125 ~~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred cCCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 345679999999998742 223444445555544455555554333
No 339
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.21 E-value=0.94 Score=47.34 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~ 212 (529)
.+...+++|||+|.+..-. -+.|-+..+..|+..++++++|-+..+...|.
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 3557899999999986522 13444455555656677777776555444333
No 340
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.18 E-value=0.4 Score=46.99 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHHHH
Q 009675 29 LLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA 74 (529)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~~l~g----~dvlv~apTGsGKTl~~~lp~ 74 (529)
.|.++.|-.+.+..=+-.|.+.... .++++.+|+|.|||.-+.+-+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHH
Confidence 3445445544443333334444322 379999999999996554433
No 341
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.17 E-value=1.1 Score=40.67 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=35.0
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
+...++||||||.+.. ...+.|.+..+..|..-+++|+++-...+..-|..
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 4578999999999875 23366777777777777788888877766655544
No 342
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.15 E-value=3.7 Score=43.48 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=28.5
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHH
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQK 209 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~ 209 (529)
.++||||.|-+... -...+..|..+.... |...++.+.||...+...
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 38899999966432 122234455554433 566678888888765444
No 343
>PRK06321 replicative DNA helicase; Provisional
Probab=92.14 E-value=1.1 Score=47.94 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=72.0
Q ss_pred HHHHHHcC---CCE-EEEcCCCchHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCcc
Q 009675 46 AIQAVLSG---RDC-FCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (529)
Q Consensus 46 ~i~~~l~g---~dv-lv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (529)
.+..++.| .++ ++.|.+|.|||...+ +. +...+..+++++ |..+|+...... ..+++..-+. ....
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l~ 292 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDLS 292 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCCC
Confidence 34455544 344 567899999996433 21 112355677776 344444432221 1234332222 2223
Q ss_pred HHHHHHHHHHhhcCCCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEecccccccCCC--CCHHHHHHHHHHHHh
Q 009675 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNY 190 (529)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~--~fr~~y~~l~~l~~~ 190 (529)
..+...+......-. ...+.+- +| -+.................+++||||=.+.+..-++ ........+..+.+.
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~-~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~ 370 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQP-GLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRM 370 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHH
Confidence 333333322222111 1233222 12 122223444444444445699999999999864331 111222334444333
Q ss_pred CC------CCCEEEEeec
Q 009675 191 LP------DVPILALTAT 202 (529)
Q Consensus 191 ~~------~~~ii~lSAT 202 (529)
+. ++|++++|-.
T Consensus 371 LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 371 LKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHhCCcEEEEeec
Confidence 32 7888888764
No 344
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.11 E-value=1.2 Score=48.89 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=23.2
Q ss_pred CEEEEcCCCchHHHHHH-HHH-hcC--CCeEEEeCcHHHHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPA-LAK--PGIVLVVSPLIALMENQVI 96 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~-l~~--~~~~lVi~P~~~L~~q~~~ 96 (529)
.+++.+++|+|||.... +.. +.. .+..++.++..+++.+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 48899999999995322 111 111 2333344455566555433
No 345
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.11 E-value=0.51 Score=52.53 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=80.0
Q ss_pred CEEEEcCCCchHHHHHHHHHhc------------CCCeEEEeCcHHHHHHHHHHHHHHcCC---ceeEeccCccHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIALMENQVIGLKEKGI---AGEFLSSTQTMQVKTK 119 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~------------~~~~~lVi~P~~~L~~q~~~~l~~~gi---~~~~~~~~~~~~~~~~ 119 (529)
-.++.--.|-|||..-..-.+. ..+.+|||+|+ +++.||..++.+... -...+..+ .....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd~-- 229 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKDK-- 229 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-ccccc--
Confidence 4567778999999754322221 24568888887 677899999944221 12222222 11111
Q ss_pred HHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEE
Q 009675 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199 (529)
Q Consensus 120 ~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~l 199 (529)
..+ .+++++.+|+.++.++.+.. -.+-++|+||||.+..+. .+.......+.....=.+
T Consensus 230 --~el----~~~dVVltTy~il~~~~l~~--------i~w~Riildea~~ikn~~-------tq~~~a~~~L~a~~RWcL 288 (674)
T KOG1001|consen 230 --SEL----NSYDVVLTTYDILKNSPLVK--------IKWLRIVLDEAHTIKNKD-------TQIFKAVCQLDAKYRWCL 288 (674)
T ss_pred --chh----cCCceEEeeHHHhhcccccc--------eeEEEEEeccccccCCcc-------hHhhhhheeeccceeeee
Confidence 111 23678888888887532211 125579999999998754 222222222223334578
Q ss_pred eecCChhHHHHHHHHhc
Q 009675 200 TATAAPKVQKDVMESLC 216 (529)
Q Consensus 200 SAT~~~~~~~~i~~~l~ 216 (529)
|+|+......++...+.
T Consensus 289 tgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 289 TGTPIQNNLDELYSLFK 305 (674)
T ss_pred cCChhhhhHHHHHHHHH
Confidence 99999888777766554
No 346
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=1.4 Score=47.36 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=25.6
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
.+...++||||||.+..- ....|.......|...++++.+|-
T Consensus 117 ~~~~KVvIIDEad~Lt~~------a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE------AFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred cCCeeEEEEEChhhcCHH------HHHHHHHHHhcCCCCeEEEEEECC
Confidence 345679999999988642 234454455555545555555543
No 347
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.08 E-value=0.21 Score=56.64 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
..|+|-|++++.. ...+++|.|..|||||.+.. +.-|. ....+|+|+.|+..+....+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999875 35689999999999996643 22222 2457999999999999888888763
No 348
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.07 E-value=1.4 Score=50.15 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
.++++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999754
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.05 E-value=4.8 Score=39.83 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=30.7
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-------CCCCEEEEeecCChhHHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-------PDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-------~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
...++++||=+-.... -......|..+.+.. |.-.++.++||...+.......
T Consensus 153 ~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 4578999998877542 112223444444322 4555788999876665544433
No 350
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.03 E-value=0.17 Score=58.25 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=86.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhc---------------------CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEe
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFL 108 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l~---------------------~~~~~lVi~P~~~L~~q~~~~l~~~---gi~~~~~ 108 (529)
|++++..-..|.|||.+-+.-.+. ..|.||||+|. ++..||..++..- ++++-.+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 567788889999999875533221 15779999998 5667899888772 2333332
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhH---------HHHHhhh--ccCCc-----cEEEEeccccccc
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM---------SKLKKIH--SRGLL-----NLVAIDEAHCISS 172 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~---------~~l~~~~--~~~~l-----~~iViDEaH~~~~ 172 (529)
.+-........ ..-.+++|+.+|...+.+.-.- .++.+.+ ..+.| =.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 22111100000 1112488888888766542211 1111100 01111 1499999998754
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHh
Q 009675 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (529)
Q Consensus 173 ~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l 215 (529)
- -....++...+|.+-.=++|+|+-.+ ..++.-.+
T Consensus 527 s-------sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 S-------SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred h-------HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 2 15666777788888889999998777 55554433
No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=0.58 Score=47.82 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=35.9
Q ss_pred hccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHH
Q 009675 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 154 ~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
...+..+++|||+||.|..-. -+.|-+..+.-|..-+++|.+.-+..+...|..
T Consensus 104 ~~~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cccCCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 335668899999999997522 245555666656666777777766665555444
No 352
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.93 E-value=0.38 Score=52.68 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHH-HHHHH
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQV-IGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~~L~~q~~-~~l~~ 100 (529)
..+|+|.+.++++... +.+.+..++-+|||.+.+..+. .....++++.|+..++++.+ .+|..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5789999999998765 5788899999999985443322 23778999999999999877 33444
No 353
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=91.84 E-value=0.19 Score=55.38 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=45.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcC-CceeEecc
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSS 110 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~g-i~~~~~~~ 110 (529)
.++++.||||+|||..+.+|.+.. ++.++|+-|.-++..-....-++.| -++..+..
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 589999999999999999999877 7788999999999777666555565 44544443
No 354
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=0.73 Score=50.12 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=25.8
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
.+...++||||||.+..-+ ...|....+..|+.-+++|..|-
T Consensus 117 ~g~~kViIIDEa~~ls~~a------~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS------FNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred cCCcEEEEEechhhccHHH------HHHHHHHHhcCCCCceEEEEECC
Confidence 3557899999999987522 24455555665544444444453
No 355
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.74 E-value=0.31 Score=47.20 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=34.8
Q ss_pred CCCEEEEcCCCchHHHH-HH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009675 53 GRDCFCLMPTGGGKSMC-YQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~-~~--lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~ 104 (529)
|.-+++.+|+|+|||.. .+ ...+..+..+++++- .+-..+..+.+..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 46788999999999963 33 334556778888883 34455666667666643
No 356
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.74 E-value=1.8 Score=45.42 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.+|+|+|||+..-
T Consensus 179 pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998654
No 357
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.71 E-value=0.22 Score=53.98 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIP 73 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~lp 73 (529)
+|+.+|.+.+..+. .|+-.+...|||+||||..+-.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCa 54 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICA 54 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHH
Confidence 58889999887754 6888899999999999864433
No 358
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.70 E-value=1.1 Score=41.76 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=71.5
Q ss_pred cCCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHH-HHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcC
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALM-ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~-~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (529)
....+.+..++|.|||.+.+ +-++-.+.+++++--++.-. ..-...+++++ ...+...+....... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~--------~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWET--------Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccC--------C
Confidence 45678899999999998765 34455677888876554321 11122222221 111111111000000 0
Q ss_pred CCcccEEEeCccccc-ChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 128 KPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 128 ~~~~~ll~~tpe~v~-t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
. .++-.. -..-+.........+.+++||+||+=....+|. -+. ..+..+....|.-.=+.+|+--.|.
T Consensus 92 ~--------~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl--i~~-eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 92 D--------RERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGY--LDV-EEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred C--------cHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCC--ccH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 0 000000 011223334455567899999999999998883 222 3444455666665577888876665
Q ss_pred H
Q 009675 207 V 207 (529)
Q Consensus 207 ~ 207 (529)
-
T Consensus 161 ~ 161 (191)
T PRK05986 161 E 161 (191)
T ss_pred H
Confidence 3
No 359
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.69 E-value=1.9 Score=45.97 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=25.3
Q ss_pred CCEEEEcCCCchHHHHHH-HHH-hc---CCCeEEEeCcHHHHHHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IPA-LA---KPGIVLVVSPLIALMENQVIGL 98 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~-l~---~~~~~lVi~P~~~L~~q~~~~l 98 (529)
+.+++.|++|+|||.... +.. +. .+..++++. ..++..+.+..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-GDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHH
Confidence 458899999999994322 111 11 234455544 456666555444
No 360
>CHL00181 cbbX CbbX; Provisional
Probab=91.67 E-value=1.3 Score=44.14 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
|.++++.+|+|+|||..+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34689999999999976643
No 361
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.66 E-value=4.6 Score=41.83 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVME 213 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~ 213 (529)
+..++|+||=+-+.-. -...+..|..+.... |...++.+|||........+..
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 4578899998876431 133344555554433 2233556777666554444443
No 362
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.64 E-value=0.83 Score=49.37 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
+++.+|.|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4999999999997654
No 363
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.59 E-value=2.6 Score=44.85 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.||+|+|||....
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 468999999999996543
No 364
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=91.59 E-value=0.27 Score=55.84 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
..|+|-|++++.. ...+++|.|..|||||.+.. +.-|. ....+|+|+.|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3589999999975 34689999999999996643 22222 2457999999999999988888773
No 365
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.58 E-value=1 Score=49.59 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=30.6
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i 211 (529)
.+...++||||+|.++.. ..+.|.+..+..|..-+++|.+|-+..+...|
T Consensus 117 ~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred cCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 345789999999998752 23556666666554445555556554444333
No 366
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.57 E-value=3.1 Score=43.74 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhc
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
...+.+.||.+-+. +.-......+..+.... +...++.++||.......++...+.
T Consensus 268 ~~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 268 RGKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred cCCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 34678999986321 11112234555554322 3345788999998887777776554
No 367
>PRK07004 replicative DNA helicase; Provisional
Probab=91.54 E-value=1 Score=48.17 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEeC---cHHHHHHHHHHHHHHcCCceeEec-cCccHHHHHHHHHHhh
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLD 125 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---~l~~~~~~lVi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~~ 125 (529)
.=+++.|.||.|||...+ +. ++..+..+++++ |..+|+....... .+++...+. +.....+...+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 445678899999996443 21 223456677776 3344444332221 123322222 2233333332222222
Q ss_pred cCCCcccEEEe-CcccccChhhHHHHHhhhcc-CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC------CCCEE
Q 009675 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP------DVPIL 197 (529)
Q Consensus 126 ~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~-~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~------~~~ii 197 (529)
.-. ...+.+. +|. +..........++... +.+++||||=.+.+...+.. ......+..+.+.+. ++|++
T Consensus 292 ~l~-~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~-~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 292 KMS-EAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQG-ENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred HHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCC-CcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 111 1233322 221 1112233333333332 35899999999998643321 111223333333222 68888
Q ss_pred EEeec
Q 009675 198 ALTAT 202 (529)
Q Consensus 198 ~lSAT 202 (529)
++|--
T Consensus 369 ~lsQL 373 (460)
T PRK07004 369 ALSQL 373 (460)
T ss_pred EEecc
Confidence 88743
No 368
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.52 E-value=1.6 Score=49.70 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
+.+++.+|+|+|||+..-.
T Consensus 488 ~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999976543
No 369
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.51 E-value=0.72 Score=46.53 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=28.7
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
+...+++||||+.+.. ..-..+.......|....++|++..+..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 4688999999999875 22345555555556555555655544443
No 370
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.50 E-value=0.47 Score=48.05 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH--HHHHh---cCCCeEEEeCcHHHH
Q 009675 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~--~lp~l---~~~~~~lVi~P~~~L 90 (529)
+.+.|.+.+..+.. +++++++++||||||... ++..+ ....+++++=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 77888887766554 578999999999999532 22222 123456665555555
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.48 E-value=18 Score=38.86 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhc
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
...++++||.+-+.-. -......+..+.... |...++.++||.......++.+.+.
T Consensus 333 ~d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 333 RNKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred cCCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 3457899999653211 111112222222221 3335788999988877666665543
No 372
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.46 E-value=1 Score=51.33 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.+|+|+|||....
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 5789999999999997543
No 373
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.39 E-value=1.3 Score=44.07 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999765
No 374
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.38 E-value=0.29 Score=45.21 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=24.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEeCcHHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l--p~l~~~~~~lVi~P~~~L~~q 93 (529)
+++++++.+|+|+|||..+.. -.+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 467899999999999964332 122224444455566677654
No 375
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.37 E-value=1.4 Score=48.26 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=28.3
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
...++||||||.+..- ....|.......|...++.+.+|-...+
T Consensus 119 ~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 4578999999998642 2355666666666665666665654433
No 376
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.34 E-value=1.1 Score=49.18 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=64.0
Q ss_pred CCceEEEEeCCcccHH----HHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cccccccCCccEEE
Q 009675 257 GDTCAIVYCLERTTCD----ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e----~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GIDip~v~~VI 331 (529)
.+.++..-++|---|+ .+.++|...|+.+..+.|.+..+.|.++++...+|+++++|.|-| +...++..+..+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 4557888999965554 455566667999999999999999999999999999999999977 57789999988888
Q ss_pred E
Q 009675 332 H 332 (529)
Q Consensus 332 ~ 332 (529)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 377
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.31 E-value=0.18 Score=56.13 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=44.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (529)
.++++.||||||||..+.+|.|.. .+.+||+=|--++........++.| .+..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 689999999999999999999876 6788888999999887777766666 444343
No 378
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.30 E-value=1.8 Score=45.20 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999997654
No 379
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.25 E-value=0.57 Score=55.55 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-ccccccCCccEEE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GIDip~v~~VI 331 (529)
.+.+++|.++|+.-+.++++.+++. ++.+..++++.+.+++.++++...+|.++|||+|..+ ...+...++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999998888753 5678889999999999999999999999999999643 3446677888877
Q ss_pred E
Q 009675 332 H 332 (529)
Q Consensus 332 ~ 332 (529)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 380
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.20 E-value=0.48 Score=47.77 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=42.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchHHHH-HHHHHhc-CCCeEEEeCcHHHH
Q 009675 34 FGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPALA-KPGIVLVVSPLIAL 90 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~-dvlv~apTGsGKTl~-~~lp~l~-~~~~~lVi~P~~~L 90 (529)
..+.++.+.|.+.+..+..++ ++++++.||||||.. ..+.+.. ...++|.+=-+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 345579999999998888776 999999999999952 2222222 25578888777777
No 381
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=1.3 Score=49.50 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=26.9
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
.+...++||||||.+.. .....|.......|..-++.+.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 35678999999999874 223455555555554445555555433
No 382
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.12 E-value=0.49 Score=46.35 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=40.6
Q ss_pred CCCCCcHHHHHHHHHHH-------cCCCEEEEcCCCchHHHHHH--HHHhcCCCeEEEeCcHHHHHHHHHHHH
Q 009675 35 GHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGL 98 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l-------~g~dvlv~apTGsGKTl~~~--lp~l~~~~~~lVi~P~~~L~~q~~~~l 98 (529)
.|.-....++.++..+. +++++++.||+|+|||.... .-.+...+..+.++++.+|+.+.....
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 33333344555444433 56799999999999995433 122235677777888888888754443
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.12 E-value=1.1 Score=40.94 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=36.2
Q ss_pred HhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
.+....+.++++|+||+-....+|. -+. ..+..+.+..|.-.=+.+|+.-.|..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 4444467799999999999888873 222 34445556666655677888766553
No 384
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.12 E-value=0.36 Score=54.30 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.|+|-|++++.. ...+++|.|+.|||||.+-. +.-+. ....+++|+.|+..+.+..+++.+
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 378999999875 45789999999999996543 21121 245689999999988888887765
No 385
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=2 Score=46.45 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q 93 (529)
+-+++.+|+|+|||+.....+...+...+-+... +|...
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4689999999999988776666544444433333 66543
No 386
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=1.7 Score=44.42 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=35.1
Q ss_pred cccCCCCCCChhHHHHHHHHHhcC--CCCCc-----------H-HHHHHH-----HHHHcC-----CCEEEEcCCCchHH
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFG--HAQFR-----------D-KQLDAI-----QAVLSG-----RDCFCLMPTGGGKS 67 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg--~~~~r-----------~-~Q~~~i-----~~~l~g-----~dvlv~apTGsGKT 67 (529)
.....|...+...++.++|++-.= ....+ . .++.++ +.+.+| |.++.++|+|+|||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 345667777888788888875321 11111 1 122222 222244 78999999999999
Q ss_pred HHH
Q 009675 68 MCY 70 (529)
Q Consensus 68 l~~ 70 (529)
+.+
T Consensus 260 lLA 262 (491)
T KOG0738|consen 260 LLA 262 (491)
T ss_pred HHH
Confidence 754
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.08 E-value=5.1 Score=42.22 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred EEEEcCCCchHHHHHH-HHHhc--CCCeEEEeC--cHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCC
Q 009675 56 CFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~l~--~~~~~lVi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (529)
+.+++++|+|||.+.. +.... .+.++++|+ |.|.-+.+|.+.+.. .+++...........
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~-------------- 168 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPV-------------- 168 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHH--------------
Confidence 5689999999985443 33322 244566555 556666666555443 333332111111100
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHH
Q 009675 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (529)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~ 208 (529)
.++ ...+... .....++|+||=+-+... -...+..+..+.+.. |...++.++||......
T Consensus 169 ----------~i~----~~~l~~~-~~~~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 169 ----------KIA----SEGVEKF-KKENFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred ----------HHH----HHHHHHH-HhCCCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhHH
Confidence 000 0011111 113478899998876432 123345555555443 44557788888765543
No 388
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=4.4 Score=41.67 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=27.7
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
.+...++||||||.+.. ..-+.|-...+..|...++++.++.+.
T Consensus 139 ~g~~rVviIDeAd~l~~------~aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR------NAANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCH------HHHHHHHHHHhcCCCCceEEEEECChh
Confidence 45688999999999864 222445555566555555555555443
No 389
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.08 E-value=0.82 Score=49.66 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=55.7
Q ss_pred EEEEeCCcccHHHHHHHHHh----C-CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccccc-cccCCccE
Q 009675 261 AIVYCLERTTCDELSAYLSA----G-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (529)
Q Consensus 261 ~IIf~~s~~~~e~l~~~L~~----~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-IDip~v~~ 329 (529)
+||.++||+-|.++++.+.. . ++.+..+.||.+...+...++ .| .+|||||+ .+.+| +|...+++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999988775 2 577899999999877765554 46 99999997 45566 88888999
Q ss_pred EEEe
Q 009675 330 VCHF 333 (529)
Q Consensus 330 VI~~ 333 (529)
+|.-
T Consensus 178 lVlD 181 (513)
T COG0513 178 LVLD 181 (513)
T ss_pred EEec
Confidence 8843
No 390
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.01 E-value=1.9 Score=43.23 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.++++.+|+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999996543
No 391
>PRK14701 reverse gyrase; Provisional
Probab=90.96 E-value=1.2 Score=54.62 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
.+.+++|.++|+.-+.++++.|+.. ++.+..+||+++.+++.+.++.+.+|+.+|||+|+.+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 4557999999999999999988862 5677899999999999999999999999999999854
No 392
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.80 E-value=0.26 Score=45.28 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=48.9
Q ss_pred EEEcCCCchHHHHHHHHH--hcCC--CeEEEeCcHHHHHHHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCC
Q 009675 57 FCLMPTGGGKSMCYQIPA--LAKP--GIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 57 lv~apTGsGKTl~~~lp~--l~~~--~~~lVi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (529)
++.|+-|-|||.+.-+.+ +... ..++|.+|..+=++...+.+.. ++.+. ...........+. .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-------~~~~~~~~~~~~~--~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-------EKKKRIGQIIKLR--F 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-------ccccccccccccc--c
Confidence 478999999997543332 2222 3689999998765554433322 11111 0000000000111 1
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
....+-|.+|+.+.... ...+++|||||=.+-- ..|..+ ....+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~-----------~~~DlliVDEAAaIp~---------p~L~~l---l~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-----------PQADLLIVDEAAAIPL---------PLLKQL---LRRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHHHHH---HCCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc-----------CCCCEEEEechhcCCH---------HHHHHH---HhhCCEEEEEeecc
Confidence 13556666666443211 1358999999998742 234444 34566888888864
No 393
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.69 E-value=1.3 Score=40.00 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=34.3
Q ss_pred HhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
......+.++++|+||+=....+|.- +. ..+..+.+..|...=+.+|+--.|.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli--~~-~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLL--DV-EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCC--CH-HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 34445667999999999998887742 21 3445555666655556666665444
No 394
>PRK09354 recA recombinase A; Provisional
Probab=90.63 E-value=1.4 Score=45.07 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=55.9
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHH
Q 009675 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (529)
Q Consensus 46 ~i~~~l~-g-----~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (529)
.++.+|. | +-+.+.+|+|+|||...+ ..+...++.+++|..--++-. ..++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH-----------
Confidence 4555666 3 456789999999995433 223345788888887766643 3445555431
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
-++++..|.. ....+..+......+.+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~--~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDT--GEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCC--HHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 1233333331 11223333444445678999999877654
No 395
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=1.5 Score=44.66 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 009675 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~--g---~dvlv~apTGsGKTl~~~ 71 (529)
.+|||...+..+.. + +-.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 36888888888763 3 357899999999996543
No 396
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=90.58 E-value=0.81 Score=48.25 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=48.4
Q ss_pred HhcCCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHH--HHhc-----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQI--PALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~l--p~l~-----~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
-+|.|...+|-|-+-+..+- .+.+.++.||+|+|||.+.+- -+.+ ...+.|+.+-|..=++....+|+.
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 46889999999988765543 356899999999999965331 1111 256788888887666666666554
No 397
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.25 Score=49.01 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.4
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
-++++.+|||||||+.++-
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 4799999999999987763
No 398
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=1.4 Score=48.02 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
+...++||||+|.++.- ..+.|.+..+..|+.-+++|.+|-+
T Consensus 118 ~~~kVvIIDEad~ls~~------a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS------AFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred CCceEEEEcCcccCCHH------HHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 45789999999998752 2344444555544333344444433
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.47 E-value=4.6 Score=45.60 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=33.8
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHHHHHHHhc
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-~~~~~ii~lSAT~~~~~~~~i~~~l~ 216 (529)
..++|+||=+-+... -......+..+... .|...++.++||...+...++.+.+.
T Consensus 263 ~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 263 DKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 457888888876432 23333445554432 24456788899988777776665553
No 400
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.45 E-value=2.1 Score=43.07 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
..+|+|||+|.+.... ...|..+.+..+....+.++++...
T Consensus 103 ~~vviiDe~~~l~~~~------~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 103 FKIIFLDEADNLTSDA------QQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred ceEEEEeCcccCCHHH------HHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 5689999999885421 2344445555554445555555433
No 401
>PRK09087 hypothetical protein; Validated
Probab=90.36 E-value=1.8 Score=41.61 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
..+++.+|+|+|||.-.+
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 448999999999997544
No 402
>PRK06749 replicative DNA helicase; Provisional
Probab=90.29 E-value=2.5 Score=44.74 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHH-H--HHhcCCCeEEEeCc
Q 009675 56 CFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSP 86 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P 86 (529)
+++.|.||.|||...+ + -+...+..+++++.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSl 222 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSL 222 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEe
Confidence 5667899999996433 1 12223556777764
No 403
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.26 E-value=0.87 Score=49.02 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=55.9
Q ss_pred CChhHHH-HHHHHHhcCCCCCcH----HHHHHHHHHH--cCCCEEEEcCCCchHHHHHH--HHHhc-------CCCeEEE
Q 009675 20 LHEKEAL-VKLLRWHFGHAQFRD----KQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ--IPALA-------KPGIVLV 83 (529)
Q Consensus 20 ~~l~~~~-~~~l~~~fg~~~~r~----~Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~--lp~l~-------~~~~~lV 83 (529)
.+..+++ +..|++. --.++|. +|.+-=+.+. .++-++|++..|||||.+++ ++-|. ..+.+||
T Consensus 187 ~~~~dEvL~~~Lek~-ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 187 TGGRDEVLQRVLEKN-SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CchHHHHHHHHHHhc-cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 4444454 4555553 3334554 3333333333 45678899999999997655 22221 2455999
Q ss_pred eCcHHHHHHHHHHHHHHcCCceeEe
Q 009675 84 VSPLIALMENQVIGLKEKGIAGEFL 108 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~gi~~~~~ 108 (529)
+.|.+-++.=....|-++|...+..
T Consensus 266 l~PN~vFleYis~VLPeLGe~~V~q 290 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGEEGVVQ 290 (747)
T ss_pred EcCcHHHHHHHHHhchhhccCceee
Confidence 9999999988888888888766543
No 404
>PRK04328 hypothetical protein; Provisional
Probab=90.23 E-value=0.23 Score=48.51 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=32.7
Q ss_pred cCCCEEEEcCCCchHHH-HHHH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 52 SGRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl-~~~l--p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
.|.-+++.+|+|+|||. |.++ -.+..+..+++++ +.+-..+..+.+.++|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 35678899999999984 4443 3355677777776 33333445555666654
No 405
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.20 E-value=0.58 Score=47.42 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHH--HHH---hcCCCeEEEeCcHHHH
Q 009675 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPA---LAKPGIVLVVSPLIAL 90 (529)
Q Consensus 39 ~r~~Q~~~i~~~l-~g~dvlv~apTGsGKTl~~~--lp~---l~~~~~~lVi~P~~~L 90 (529)
+.+.|.+.+..+. .++++++.++||+|||.... +.. .....++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 6678888887654 56789999999999995422 111 1224556666666555
No 406
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.16 E-value=0.22 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=15.4
Q ss_pred EEEEcCCCchHHHH--HHHHHhcC
Q 009675 56 CFCLMPTGGGKSMC--YQIPALAK 77 (529)
Q Consensus 56 vlv~apTGsGKTl~--~~lp~l~~ 77 (529)
++|.+|||||||.+ .++-.+.+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhc
Confidence 67899999999953 34444443
No 407
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.13 E-value=1.3 Score=45.85 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCchHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~ 69 (529)
-.|+..++.||.|+|||..
T Consensus 167 GkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccCceEEEeCCCCCChhHH
Confidence 3689999999999999954
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=90.07 E-value=6.3 Score=41.72 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=28.4
Q ss_pred EEEEcCCCchHHHHHH-HHH-h-cC-CCeEEEeC--cHHHHHHHHHHHH-HHcCCc
Q 009675 56 CFCLMPTGGGKSMCYQ-IPA-L-AK-PGIVLVVS--PLIALMENQVIGL-KEKGIA 104 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~-l-~~-~~~~lVi~--P~~~L~~q~~~~l-~~~gi~ 104 (529)
+++++++|+|||.+.. +.. + .. +.++++|. +.|.-+.+|...+ ...|++
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 5788999999996543 322 2 22 44555555 5666555555443 334544
No 409
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.02 E-value=1.1 Score=47.76 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=47.1
Q ss_pred eEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 260 CAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 260 ~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
-+||+++||+-+.++.+.|.. -++.+..+.|||....+++++++ ..+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 489999999999999999976 38999999999998888887776 778999997
No 410
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.01 E-value=0.53 Score=52.82 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---h----cCCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~---l----~~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
..+++-|++++.. ...+++|.|..|||||.+..--+ + ..+..+++++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999864 34578999999999997644222 1 1255899999999999988888876
No 411
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.96 E-value=0.94 Score=45.52 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH--HHHHhcC---CCeEEEeCcHHHH
Q 009675 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~--~lp~l~~---~~~~lVi~P~~~L 90 (529)
.+.+.|.+.+..+.. ++++++++|||||||... ++..+.. ..+++++-...+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 366777777766554 578999999999999642 1222211 4567777666665
No 412
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.96 E-value=0.75 Score=55.36 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH---HHhcC---CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK---PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~l---p~l~~---~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
++++-|+++|.. .+++++|.|.-|||||.+..- -.+.. ...++||+-|+..+....+++.+
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 478999999984 688999999999999977542 22222 24589999999988776666555
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.95 E-value=15 Score=33.32 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-~~~~~ii~lSAT~~~~~~~ 209 (529)
...+++|+|....... -......+..+... .+...++.+.|+...+..+
T Consensus 81 ~~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 81 ENFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 3577899999886532 01223344444332 2445566677654444443
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.82 E-value=11 Score=39.95 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHH-HHHh-c--CCCeEEEeC--cHHHHHHHHHHHH-HHcCCce
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPAL-A--KPGIVLVVS--PLIALMENQVIGL-KEKGIAG 105 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l-~--~~~~~lVi~--P~~~L~~q~~~~l-~~~gi~~ 105 (529)
-+++++++|+|||.+.. +... . .+.++++|. +.|.-+.+|...+ ...+++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 36789999999997643 3322 2 355566555 4555555555544 3345443
No 415
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.69 E-value=3.6 Score=39.21 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCchHHH-HHHHH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 53 g~dvlv~apTGsGKTl-~~~lp--~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
|.-+++.+++|+|||. |.++. .+..+..+++++... -..+..+.+..+|.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCC
Confidence 4567889999999974 44443 345577788877544 34566666766654
No 416
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.64 E-value=0.51 Score=53.63 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
..|+|-|++++.. ...+++|.|..|||||.+.. +.-+. ....+|+++-|+..+....+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999999975 35789999999999996543 22222 1356999999998888888887753
No 417
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.63 E-value=2 Score=47.54 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=24.8
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
+...+|||||+|.+.. .....|.......|...++++.+|-
T Consensus 119 ~~~kVvIIDEa~~L~~------~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCH------HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 4567899999999864 1234444445555544455555543
No 418
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.63 E-value=2.9 Score=43.58 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchHHH
Q 009675 53 GRDCFCLMPTGGGKSM 68 (529)
Q Consensus 53 g~dvlv~apTGsGKTl 68 (529)
...+++.||+|+|||.
T Consensus 113 ~nplfi~G~~GlGKTH 128 (408)
T COG0593 113 YNPLFIYGGVGLGKTH 128 (408)
T ss_pred CCcEEEECCCCCCHHH
Confidence 3578999999999996
No 419
>PRK07773 replicative DNA helicase; Validated
Probab=89.61 E-value=1.5 Score=51.00 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEcCCCchHHHHHHHHH----hcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccC-ccHHHHHHHHHHhhcCC
Q 009675 56 CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST-QTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~----l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 128 (529)
+++.|++|.|||...+--+ ...+..+++++- -.=..|.+.++.. .+++...+..+ ....+...+......-
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSl-Ems~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l- 297 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSL-EMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEI- 297 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH-
Confidence 5678899999996443211 223456666662 2222344444443 23332222221 2222222222111110
Q ss_pred CcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC------CCCEEEEee
Q 009675 129 PSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP------DVPILALTA 201 (529)
Q Consensus 129 ~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~------~~~ii~lSA 201 (529)
....+.+. +|. +.-......+........+++||||=.+.+..-+. .......+..+.+.+. ++|++++|-
T Consensus 298 ~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ei~~isr~LK~lAkel~vpvi~lsQ 375 (886)
T PRK07773 298 SEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK-YENRQQEVSEISRHLKLLAKELEVPVVALSQ 375 (886)
T ss_pred hcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCcEEEecc
Confidence 01223221 221 11123334444444445699999999998864211 1111223333332222 788888876
Q ss_pred cC
Q 009675 202 TA 203 (529)
Q Consensus 202 T~ 203 (529)
.-
T Consensus 376 Ln 377 (886)
T PRK07773 376 LS 377 (886)
T ss_pred cC
Confidence 53
No 420
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.55 E-value=2.8 Score=43.00 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.||.|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34689999999999654
No 421
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.54 E-value=2.7 Score=43.44 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+.+++.+|+|+|||+...
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999997654
No 422
>PHA00350 putative assembly protein
Probab=89.42 E-value=1.6 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHH----HHHhcCCC
Q 009675 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (529)
Q Consensus 56 vlv~apTGsGKTl~~~----lp~l~~~~ 79 (529)
.++.++.|||||+... +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999998654 56666654
No 423
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.31 E-value=3 Score=44.04 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=51.9
Q ss_pred ceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----cc-ccccccCCcc
Q 009675 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AF-GMGIDRKDVR 328 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~-~~GIDip~v~ 328 (529)
.-++|.|+|++-|.++...-++ .|+.+...|||.+.-++..-++ -...++|||+ +. --++|+.+|.
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeee
Confidence 3467889999998888765554 4889999999999888766665 4567999996 22 2357777777
Q ss_pred EEEE
Q 009675 329 LVCH 332 (529)
Q Consensus 329 ~VI~ 332 (529)
++|.
T Consensus 373 ~LV~ 376 (731)
T KOG0339|consen 373 YLVL 376 (731)
T ss_pred EEEE
Confidence 7663
No 424
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.27 E-value=1.7 Score=43.98 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=54.6
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHH
Q 009675 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (529)
Q Consensus 46 ~i~~~l~------g~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (529)
.++.++. |+-+.+.+|+|+|||...+- -+...++.+++|.+--++-.+ .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~----------- 107 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL----------- 107 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH-----------
Confidence 4555665 35577899999999954332 122347788999877666433 344444321
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
-++++..|... ...+..+......+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 --------------DNLLISQPDTG--EQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --------------HHheecCCCCH--HHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 11233333311 1123333444445678999999977654
No 425
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.17 E-value=0.65 Score=45.73 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEe
Q 009675 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (529)
Q Consensus 45 ~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi 84 (529)
+++..+..|+++++.+|+|+|||.+...-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3445566789999999999999976553332234444444
No 426
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.07 E-value=2.9 Score=44.35 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCchHHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIP 73 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp 73 (529)
++.+++.+|+|+|||+....-
T Consensus 217 p~gVLL~GPPGTGKT~LAraI 237 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAV 237 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 467999999999999865443
No 427
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.05 E-value=3.1 Score=40.32 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHcCC-CEEEEcCCCchHHHHHH--HHHhcCCCeEEEeCcH
Q 009675 50 VLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPL 87 (529)
Q Consensus 50 ~l~g~-dvlv~apTGsGKTl~~~--lp~l~~~~~~lVi~P~ 87 (529)
+..|+ -+.++++-|||||..-. +..+..+..++|+.|-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~ 87 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK 87 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC
Confidence 34555 56789999999998765 2222334445545443
No 428
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.01 E-value=1.9 Score=42.88 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++++|||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457789999999996543
No 429
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.91 E-value=0.27 Score=54.68 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=41.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (529)
.++++.||||||||..+.+|.+.. ++.+||+=|--++..-.....++ .|-++..+
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~f 232 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRF 232 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 679999999999999999998876 77788888999997665544433 34444433
No 430
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=88.85 E-value=1.3 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.5
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~ 71 (529)
-.|+.+++++|+|+|||....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCCEEEEECCCCCChhHHHH
Confidence 367889999999999997544
No 431
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.85 E-value=2.2 Score=47.29 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=32.0
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (529)
.+...++||||||.++.. ....|....+..|...+++|++|-...+..
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 345789999999999752 235566666666666677777775444433
No 432
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.81 E-value=1.7 Score=44.19 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999997654
No 433
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.81 E-value=1.8 Score=43.88 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCc
Q 009675 54 RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (529)
+-+.+.+|+|+|||...+ .-+...++.+++|..--++-.. .++.+|+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~------------------------- 107 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI------------------------- 107 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-------------------------
Confidence 557789999999995432 1223347778888765555332 344444321
Q ss_pred ccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 131 ~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
-++++..|... ...+..+......+.+++||||-+-.+.
T Consensus 108 ~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12333333321 1123333344445668999999988764
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.68 E-value=0.67 Score=47.45 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHcCCCEEEEcCCCchHHHHH--HHHHhcCCCeEEEeCcHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~~--~lp~l~~~~~~lVi~P~~~L 90 (529)
+..++++++.+|||||||... ++..+....+++.|=.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 345789999999999999532 11112224566666666665
No 435
>CHL00195 ycf46 Ycf46; Provisional
Probab=88.66 E-value=2.2 Score=45.92 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+.+++.+|+|+|||+..-
T Consensus 259 pkGILL~GPpGTGKTllAk 277 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3679999999999997653
No 436
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.55 E-value=7.1 Score=41.71 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHc-----CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 45 DAIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 45 ~~i~~~l~-----g~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
.-++.++. |.-+++.+++|+|||...+ +. ....++.+++++.--+ ..|...+..++|
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg 145 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLG 145 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcC
Confidence 34555664 3557889999999996433 21 1233567888886533 345555555554
No 437
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.48 E-value=0.53 Score=49.86 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g~d--vlv~apTGsGKTl~ 69 (529)
+.+.|.+.+..+++... ++|.+|||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 46888888888887643 56889999999964
No 438
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=4.6 Score=43.83 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=32.9
Q ss_pred cCCCCCCChhHHHHHHHHHhcC-CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg-~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~ 70 (529)
..+|.+++-.+..+..|.+... +.+|-.++.-.+. =.+-+++.+|+|+|||..+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHHH
Confidence 4456666666666655554433 3344444433221 2378999999999999744
No 439
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.39 E-value=3.7 Score=47.56 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.+.++.+|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 588999999999997543
No 440
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=1.9 Score=47.67 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=27.0
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
.+...++||||+|.+..- ..+.|....+..|...++.|.+|-
T Consensus 125 ~~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred cCCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 345789999999998752 234555556665555555565553
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.02 E-value=1.5 Score=42.72 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCchHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~ 69 (529)
+-.|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34789999999999999964
No 442
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.01 E-value=0.76 Score=46.87 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=24.7
Q ss_pred HcCCCEEEEcCCCchHHHH--HHHHHhcCCCeEEEeCcHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~--~~lp~l~~~~~~lVi~P~~~L 90 (529)
..+++++++++||||||.. +++..+....+++++=-+.+|
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 3578999999999999953 122223334555554344443
No 443
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.61 E-value=6.2 Score=36.43 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=24.7
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT 202 (529)
.+...++||||+|.+..- ....|....+..|+..++.|+++
T Consensus 94 ~~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 345779999999998652 12344444455454445555554
No 444
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.58 E-value=4.5 Score=46.84 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.++++.+|+|.|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 488999999999997543
No 445
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.39 E-value=3.3 Score=38.57 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=51.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----cccc-cccCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~G-IDip~ 326 (529)
.+.++||.++++.-+.+.++.+... ++.+..++|+.+..++.... .+..+|+|+|.. +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999988887776553 67888999998876554332 267789999952 2222 55667
Q ss_pred ccEEEEeC
Q 009675 327 VRLVCHFN 334 (529)
Q Consensus 327 v~~VI~~~ 334 (529)
++++|.-.
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 77776433
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.37 E-value=2.1 Score=46.41 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCC
Q 009675 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~-~l--p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (529)
|.-+++.+++|+|||... ++ -++..+..+++++-.. -..+..+.+..+|..... ....+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~g~~~~~---------------~~~~g-- 334 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSWGIDLEK---------------MEEKG-- 334 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHcCCChHH---------------HhhcC--
Confidence 456788999999999532 22 3345577788886543 355666666666643211 01111
Q ss_pred cccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
...+...-|....-..++..+.........+++|||=.--+..
T Consensus 335 ~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 335 LLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred CceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1223322333222223444454444445678999998876643
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.29 E-value=3.2 Score=39.05 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH--hcCCCeEEEeCcH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp~--l~~~~~~lVi~P~ 87 (529)
|.-+.+.+|+|+|||...+ +.. ...+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567899999999996543 221 2345667776654
No 448
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.24 E-value=2.3 Score=43.04 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=27.0
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHH-HHHHHH--hc------CCCeEEEeCcHH
Q 009675 46 AIQAVLSG-----RDCFCLMPTGGGKSM-CYQIPA--LA------KPGIVLVVSPLI 88 (529)
Q Consensus 46 ~i~~~l~g-----~dvlv~apTGsGKTl-~~~lp~--l~------~~~~~lVi~P~~ 88 (529)
.++.++.| .-+.+.+|+|+|||. |.++.. .. .++.+++|.---
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 34555554 456799999999994 444332 11 256888887544
No 449
>PF05729 NACHT: NACHT domain
Probab=87.24 E-value=6.5 Score=34.84 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=24.2
Q ss_pred ccEEEEecccccccCCCC--CHHHHHHHHHHHHh--CCCCCEEEEeec
Q 009675 159 LNLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTAT 202 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~--fr~~y~~l~~l~~~--~~~~~ii~lSAT 202 (529)
--+||||-.|.+...... -.+....+..+... .++++++..|.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 345999999998763321 11222345555555 556665554433
No 450
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.12 E-value=5 Score=44.28 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhc---CCCeEEEeCcHHHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~--~lp~l~---~~~~~lVi~P~~~L~~q~~~~ 97 (529)
...+.+.|+.+|++..+..- +-...+.+-.++..|==.|||..- ++..+. .+-.+++++|.+..++...++
T Consensus 228 a~r~~~~lk~~Fdi~~~s~~----~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSDA----AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred HHHHHHHHHHHcCCccccHH----HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHH
Confidence 44577888899998866542 223345677788888899999643 233222 478899999999999988888
Q ss_pred HHHc
Q 009675 98 LKEK 101 (529)
Q Consensus 98 l~~~ 101 (529)
+...
T Consensus 304 I~~~ 307 (738)
T PHA03368 304 IGAR 307 (738)
T ss_pred HHHH
Confidence 7763
No 451
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.03 E-value=3 Score=39.43 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36788899999999963
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.00 E-value=0.84 Score=42.32 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHH
Q 009675 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~ 69 (529)
.+.+.|.+.+..... |+.+++.+|||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 477888888877664 67889999999999964
No 453
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.97 E-value=1.1 Score=42.88 Aligned_cols=21 Identities=33% Similarity=0.252 Sum_probs=14.7
Q ss_pred EEEeCccccccccCCccEEEE
Q 009675 312 VVATVAFGMGIDRKDVRLVCH 332 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~ 332 (529)
-+.|..-..|...+.|-+++.
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~ 204 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLL 204 (234)
T ss_pred ceechHHcceEEeCCEEEEEC
Confidence 466777788888877755554
No 454
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.89 E-value=1.6 Score=46.84 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred ceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 009675 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (529)
+.+||.+++++-+++....|...|+.+..++++.+..++..++....+|+.+++++|+-
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 46899999999999999999999999999999999999999999999999999999964
No 455
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.89 E-value=2.4 Score=41.04 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCC----CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccC-CCCCCc
Q 009675 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (529)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRag-R~G~~g 356 (529)
++.+..++++.+... -.|.++. ..|+|+=+.++||+-+++........-++..+++.|+.=-.| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 567777776554433 3444443 679999999999999999999999999999999999875555 556577
Q ss_pred eEEEEEecccHHHHHHHHH
Q 009675 357 KSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 357 ~~i~~~~~~d~~~~~~i~~ 375 (529)
.|-+|.+++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8888888776666666543
No 456
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.85 E-value=11 Score=41.86 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=35.3
Q ss_pred HcCCCEEEEcCCCchHHHHHHH---HHhc-CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCYQI---PALA-KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~l---p~l~-~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.+.+-.++.+|=|-|||.+-.+ ..+. .+..++|.+|...-+++..+.++.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 3456678899999999965331 1122 467899999988777776666555
No 457
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.78 E-value=4.2 Score=46.97 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+++++.+|+|.|||....
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997654
No 458
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=86.62 E-value=5.9 Score=44.37 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
+.+++.+|+|+|||.....
T Consensus 186 ~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5699999999999976543
No 459
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.58 E-value=5.5 Score=43.76 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=25.5
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
.+...++||||+|.+... ..+.|.......|..-++.+.+|-.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~------a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS------AFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHH------HHHHHHHhhccCCCCEEEEEecCCh
Confidence 356789999999998752 2234444444444444444544543
No 460
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.55 E-value=2.6 Score=40.95 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcC-CCeEEEeCcHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMEN 93 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q 93 (529)
.++++.-+|+|+|||+.+ -+|.. ....++.+--.+|+-.
T Consensus 151 PknVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred cceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 389999999999999743 34443 3445666666666554
No 461
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.54 E-value=7.2 Score=40.39 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
.+...++||||+|.+.. ...+.|.+..+..|...++++++.-+.
T Consensus 139 ~~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred cCCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 34577999999999854 233556566666666566666555443
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.27 E-value=1.6 Score=43.05 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~ 69 (529)
+.+.|.+.+..++.. .-+++.+|||||||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 457788888776643 3478999999999964
No 463
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.17 E-value=1.4 Score=52.53 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCce---EEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc-ccc-cC-Cc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-DV 327 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~-GID-ip-~v 327 (529)
+.+++|.++|++-+.++++.+++. |+.+ ..+||+++..++....+.+.+|..+|||+|+..-. .++ +. ++
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 567999999999999998888763 4443 36899999999999899999999999999975322 111 11 56
Q ss_pred cEEEEeC
Q 009675 328 RLVCHFN 334 (529)
Q Consensus 328 ~~VI~~~ 334 (529)
+++|.-+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 6766544
No 464
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=86.11 E-value=3.2 Score=40.72 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=29.2
Q ss_pred HHHHHHHcC----CCEE-EEcCCCchHH-HHHHHHHhc--------CCCeEEEeCcHH
Q 009675 45 DAIQAVLSG----RDCF-CLMPTGGGKS-MCYQIPALA--------KPGIVLVVSPLI 88 (529)
Q Consensus 45 ~~i~~~l~g----~dvl-v~apTGsGKT-l~~~lp~l~--------~~~~~lVi~P~~ 88 (529)
+.++.+|.| ..+. +.+|.|+||| +|.++.+-. .++.+++|.-..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 467777765 3343 8899999999 555554321 156788886443
No 465
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.73 E-value=2.8 Score=46.78 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccccc-cccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-IDip~ 326 (529)
...+||.|+|++-+.++++.+... ++.+..+||+.+.+.+...+ ....+|||+|. .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 447899999999999998877642 78889999998776554433 34678999995 33333 67888
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888884
No 466
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=85.68 E-value=11 Score=40.31 Aligned_cols=118 Identities=23% Similarity=0.241 Sum_probs=85.7
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~ 156 (529)
++.++||.+=|+-++.+..+.|.+.|+++.++|+....-++..+..+++.|. ++++++- +.|..-.+.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGI----------NLLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGI----------NLLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEee----------hhhhccCCC
Confidence 3789999999999999999999999999999999999999999999999987 7776552 234444555
Q ss_pred CCccEEEEecccccccCCCCCHHH---HHHHHHHHHhCCCCCEEEEeecCChhHHHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPS---YRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~---y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i 211 (529)
-.+++++|=+||. .|+ .|.. ...+++.-+.. +-.+|+..-..+..+.+-|
T Consensus 513 PEVsLVAIlDADK---eGF-LRse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 513 PEVSLVAILDADK---EGF-LRSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAI 565 (663)
T ss_pred cceeEEEEeecCc---ccc-ccccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHH
Confidence 5688999888987 342 2332 33344333322 3346666666666655443
No 467
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.58 E-value=6.4 Score=34.17 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
++++||+|+|||....
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999996543
No 468
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.44 E-value=1.3 Score=49.03 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=55.0
Q ss_pred HHHHhcCCCeEEEEeCccccccccCCccE--------EEEeCCCCCHHHHHHHHcccCCCCCCc---eEEEEEecccHHH
Q 009675 301 LDDWISSRKQVVVATVAFGMGIDRKDVRL--------VCHFNIPKSMEAFYQESGRAGRDQLPS---KSLLYYGMDDRRR 369 (529)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GIDip~v~~--------VI~~~~p~s~~~y~Q~~GRagR~G~~g---~~i~~~~~~d~~~ 369 (529)
-++|++|+..|-|-+.+++-||-+..-+. =|-+.+|+|.+--+|..||+.|.++.+ .++++-...-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 46799999999999999999998875543 345779999999999999999987543 3344433333444
Q ss_pred HHHHHH
Q 009675 370 MEFILS 375 (529)
Q Consensus 370 ~~~i~~ 375 (529)
+..++.
T Consensus 930 FAS~VA 935 (1300)
T KOG1513|consen 930 FASIVA 935 (1300)
T ss_pred HHHHHH
Confidence 444443
No 469
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.30 E-value=0.9 Score=44.81 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=25.3
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHhcCC-CeEEEeCcHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~--~lp~l~~~-~~~lVi~P~~~L 90 (529)
.+..+++.||||||||... ++..+... .+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4678999999999999542 23333334 666766655554
No 470
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=12 Score=36.47 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=43.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l-~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q 93 (529)
....+++-..+..+.|++.--..-+.|- +-+..-. -.+.+++-+|+|+|||||+-.-+- +..-..+-+--.+|++.
T Consensus 174 vty~dvggckeqieklrevve~pll~pe--rfv~lgidppkgvllygppgtgktl~aravan-rtdacfirvigselvqk 250 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPE--RFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN-RTDACFIRVIGSELVQK 250 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHH--HHhhcCCCCCCceEEeCCCCCchhHHHHHHhc-ccCceEEeehhHHHHHH
Confidence 3455677788888888876544333332 1111111 237899999999999998643332 22223333333455543
No 471
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.95 E-value=0.93 Score=50.08 Aligned_cols=165 Identities=17% Similarity=0.168 Sum_probs=89.9
Q ss_pred CCCcHHHHHHHHHHHc--------C-CC-EEEEcCCCchH--HHHHHH-HH-hcCCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 37 AQFRDKQLDAIQAVLS--------G-RD-CFCLMPTGGGK--SMCYQI-PA-LAKPGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~--------g-~d-vlv~apTGsGK--Tl~~~l-p~-l~~~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
..+...|.+++--+.+ | +- +++-...|.|| |.+-++ -- |.-.+++|.++-...|--|--+.|+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcC
Confidence 3577899998855443 3 22 33433555555 433221 11 2225789999999888777777777754
Q ss_pred Cc---eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccC-----hh----hHHHHHhhhccCCccEEEEeccccc
Q 009675 103 IA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-----PG----FMSKLKKIHSRGLLNLVAIDEAHCI 170 (529)
Q Consensus 103 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t-----~~----~~~~l~~~~~~~~l~~iViDEaH~~ 170 (529)
.. +..++--.- .-+..-..+...--++++|.-.+.. .+ ++..|........=.+||+||+|.-
T Consensus 343 A~~I~V~alnK~KY-----akIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 343 ATGIAVHALNKFKY-----AKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred CCCccceehhhccc-----ccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 33 332221110 0011112233345678887653321 11 2333333333344568999999987
Q ss_pred ccC---CC-CCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 171 SSW---GH-DFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 171 ~~~---g~-~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
... +. .--+.=..+..+...+|+..++.-|||-..+
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE 457 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC
Confidence 431 00 0000014566788899999999999995543
No 472
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.82 E-value=7.4 Score=42.30 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
+...++||||||.+..- ....|.......|..-.+.|++|-+
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEECCh
Confidence 45789999999998652 2344555555555444455555543
No 473
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=84.73 E-value=5.4 Score=41.69 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=25.4
Q ss_pred EEEEcCCCchHHHHHHHHH----hc--CCCeEEEeCcHHHH
Q 009675 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIAL 90 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~----l~--~~~~~lVi~P~~~L 90 (529)
.++.+..|||||.+..+-+ +. .+..++++-|+..-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~s 44 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNS 44 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhH
Confidence 5778999999997655332 33 56778888888763
No 474
>PRK10436 hypothetical protein; Provisional
Probab=84.62 E-value=1.8 Score=46.27 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~ 69 (529)
+.+.|.+.+..++.. .-+++.+|||||||..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 456777777776643 3578999999999974
No 475
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=84.62 E-value=3 Score=42.71 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=22.6
Q ss_pred CCEEEEcCCCchHH-HHHHHHHhc--------CCCeEEEeCcHH
Q 009675 54 RDCFCLMPTGGGKS-MCYQIPALA--------KPGIVLVVSPLI 88 (529)
Q Consensus 54 ~dvlv~apTGsGKT-l~~~lp~l~--------~~~~~lVi~P~~ 88 (529)
.-+.+.+|+|+||| +|.++..-. .++.+++|.-.-
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 34568999999999 444443211 136788887643
No 476
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=84.53 E-value=4.2 Score=39.35 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHH----HHHHcC---CCEEEEcCCCchHHHH--HHHHHhcCCCeEEEeCcHHHHH--HHHHHHHHHcCCc
Q 009675 42 KQLDAI----QAVLSG---RDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIALM--ENQVIGLKEKGIA 104 (529)
Q Consensus 42 ~Q~~~i----~~~l~g---~dvlv~apTGsGKTl~--~~lp~l~~~~~~lVi~P~~~L~--~q~~~~l~~~gi~ 104 (529)
.|++.+ .+.++| +++++.++-|+|||.. .++..+...+.-||=++...|. .+.++.++....+
T Consensus 34 ~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~k 107 (249)
T PF05673_consen 34 RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYK 107 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCC
Confidence 455444 345555 6899999999999964 2344445566777777776663 3556666654433
No 477
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.52 E-value=8.9 Score=44.39 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.4
Q ss_pred HHHHHHHHH----cC--CCEEEEcCCCchHHHHHH
Q 009675 43 QLDAIQAVL----SG--RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 43 Q~~~i~~~l----~g--~dvlv~apTGsGKTl~~~ 71 (529)
|..-|..+. ++ .+.++++|.|+|||....
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 666666654 22 589999999999997543
No 478
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=84.46 E-value=10 Score=34.71 Aligned_cols=132 Identities=21% Similarity=0.177 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHH-HHHHHHHHHHHcCCceeEeccCccHHHH-HHHHHHhhcCCCc
Q 009675 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQTMQVK-TKIYEDLDSGKPS 130 (529)
Q Consensus 56 vlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~-L~~q~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 130 (529)
+.|--..|=|||.+++ +-++-.+.+++++--++. --.--...+..++. ..+...+..-... .....+.
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~-~~~~~~g~~f~~~~~~~~~~~------ 78 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPN-VEIERFGKGFVWRMNEEEEDR------ 78 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT---EEEE--TT----GGGHHHHH------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCe-EEEEEcCCcccccCCCcHHHH------
Confidence 3455678899998876 444556888888876665 22222333444331 1111111100000 0000000
Q ss_pred ccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 131 ~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
..+ ..-+....+....+.+++||+||+-...++|. -+. ..+..+.+..|.-.=+.||+--.|..
T Consensus 79 ---------~~~-~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gl--l~~-~~v~~~l~~rp~~~evVlTGR~~~~~ 142 (172)
T PF02572_consen 79 ---------AAA-REGLEEAKEAISSGEYDLVILDEINYAVDYGL--LSE-EEVLDLLENRPESLEVVLTGRNAPEE 142 (172)
T ss_dssp ---------HHH-HHHHHHHHHHTT-TT-SEEEEETHHHHHHTTS--S-H-HHHHHHHHTS-TT-EEEEE-SS--HH
T ss_pred ---------HHH-HHHHHHHHHHHhCCCCCEEEEcchHHHhHCCC--ccH-HHHHHHHHcCCCCeEEEEECCCCCHH
Confidence 000 11223334455567799999999999888773 222 44555566666666678888766543
No 479
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=84.22 E-value=2.8 Score=46.50 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred ceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc------cccccCCccEEE
Q 009675 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG------MGIDRKDVRLVC 331 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~------~GIDip~v~~VI 331 (529)
+.+||.++++.-+++..+.|+..|+.+..+|++++..++..+.+....|.+++++.|.--- .-+...++.+||
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 4578999999999988899999999999999999999999999999999999999885321 123334566666
No 480
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=2.8 Score=47.24 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=20.8
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCCchHHH
Q 009675 42 KQLDAIQAVLS-------G--------RDCFCLMPTGGGKSM 68 (529)
Q Consensus 42 ~Q~~~i~~~l~-------g--------~dvlv~apTGsGKTl 68 (529)
.|.+|+.++.+ | ..++..+|||.|||-
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHH
Confidence 68888887653 2 257789999999994
No 481
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.92 E-value=14 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.||.|+|||...
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36789999999999654
No 482
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.59 E-value=5.5 Score=40.59 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=30.8
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (529)
.+...++||||||.+..- .-+.|.+..+..|+.-+++|+++-+..+..
T Consensus 108 ~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred ccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 455789999999998652 224555566666655566676664444433
No 483
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=7.4 Score=42.60 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=34.2
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCC-CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGH-AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~-~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~ 70 (529)
....|.++.-.++..+.|.+.-.| +.|..+|.-.. .-.+-+++.+|.|+|||+.+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa---kiPkGvlLvGpPGTGKTLLA 200 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA---KIPKGVLLVGPPGTGKTLLA 200 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc---ccccceeEecCCCCCcHHHH
Confidence 334555555555655555554433 34555555433 22478999999999999854
No 484
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=83.45 E-value=1.5 Score=41.35 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=16.8
Q ss_pred HcCCCEEEEcCCCchHHHHHH-HHHh
Q 009675 51 LSGRDCFCLMPTGGGKSMCYQ-IPAL 75 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~-lp~l 75 (529)
..++++++.+|.|+|||.... +|.+
T Consensus 20 aG~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp HCC--EEEES-CCCTHHHHHHHHHHC
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999997654 4444
No 485
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=83.14 E-value=1.7 Score=49.36 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCc
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA---KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~~gi~ 104 (529)
-.|+|-|.++|..-....+..+++|+|+|||-... +-.+. ...+++|++....-++|-.+.+.+..+.
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d 809 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVD 809 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccc
Confidence 45789999999988888999999999999995432 22222 3788999999888888877777665443
No 486
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=1.2 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=19.1
Q ss_pred CCEEEEcCCCchHHHHHH-HHHhcCCC
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IPALAKPG 79 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~l~~~~ 79 (529)
-++|+.+|||+|||+..+ |+-+..-+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCC
Confidence 479999999999998776 33343333
No 487
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=10 Score=36.65 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHH
Q 009675 54 RDCFCLMPTGGGKSM 68 (529)
Q Consensus 54 ~dvlv~apTGsGKTl 68 (529)
+.+++-+|+|+|||.
T Consensus 190 rgvllygppg~gktm 204 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTM 204 (408)
T ss_pred cceEEeCCCCCcHHH
Confidence 679999999999996
No 488
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.61 E-value=3.6 Score=41.61 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHH-HHHcCCCEEEEcCCCchHHHH--HHHHHhcCCCeEEEeCcHHHH
Q 009675 37 AQFRDKQLDAIQ-AVLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 37 ~~~r~~Q~~~i~-~~l~g~dvlv~apTGsGKTl~--~~lp~l~~~~~~lVi~P~~~L 90 (529)
..+.+.|..-+. ++..+++++++++||+|||.. +++..+-...+.+.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 357778877554 455678999999999999953 122233334455555444443
No 489
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.55 E-value=1.4 Score=47.35 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~g~d--vlv~apTGsGKTl~ 69 (529)
+.+.|.+.+..++.... +++.+|||||||..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 46778888887776433 57899999999965
No 490
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.46 E-value=12 Score=40.84 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=31.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~ 70 (529)
-.|.+.+-..++...|....=+.-=+|-+-+++-- -...-+++++|+|.||||.+
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 34566666666666666532222222322222210 12357899999999999854
No 491
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.30 E-value=9.1 Score=44.32 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCchHHHHH
Q 009675 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 42 ~Q~~~i~~~l~-------g-----~---dvlv~apTGsGKTl~~ 70 (529)
+|.+++..+.+ | + .+++.+|||+|||...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 67777766532 1 1 2688999999999755
No 492
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.13 E-value=6.9 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (529)
-+++.+|+|+|||....+
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999976543
No 493
>PF12846 AAA_10: AAA-like domain
Probab=82.06 E-value=1.3 Score=43.81 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIAL 90 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~L 90 (529)
++++++.|+||+|||..... ..+..+..++|+=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchH
Confidence 36789999999999976542 222346666666565443
No 494
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=82.06 E-value=8.4 Score=40.58 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=65.8
Q ss_pred CCEEE-EcCCCchHHHHHHHH----HhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccCc-cHHHHHHHHHHhh
Q 009675 54 RDCFC-LMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSSTQ-TMQVKTKIYEDLD 125 (529)
Q Consensus 54 ~dvlv-~apTGsGKTl~~~lp----~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~~~-~~~~~~~~~~~~~ 125 (529)
.|+++ .|.+|-|||.-++-- +......+.+.+ +..-..|.+.++-. -++....+..+. ...+...+.....
T Consensus 196 ~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFS-LEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~ 274 (435)
T COG0305 196 GDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFS-LEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAAS 274 (435)
T ss_pred CCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEE-ccCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHH
Confidence 56654 569999999543311 112233333333 33333455555443 234433333333 2233222222222
Q ss_pred cCCCcccEE-EeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhC------CCCCEEE
Q 009675 126 SGKPSLRLL-YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILA 198 (529)
Q Consensus 126 ~~~~~~~ll-~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~------~~~~ii~ 198 (529)
.-. ...+. .-||- +.-........++.....+++++||=.+.+..-+.. .+....+..+.+.+ -++|+++
T Consensus 275 ~l~-~~~i~IdD~~~-~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~-~~r~qevs~iSr~LK~lAkEl~vpvia 351 (435)
T COG0305 275 ELS-EAPIFIDDTPG-LTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS-ENRKQEVSEISRSLKGLAKELGVPVIA 351 (435)
T ss_pred HHh-hCCeeecCCCc-CCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccc-hhHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 111 12222 12222 111223444455555556999999999999875521 11112232222222 1688888
Q ss_pred Ee
Q 009675 199 LT 200 (529)
Q Consensus 199 lS 200 (529)
+|
T Consensus 352 lS 353 (435)
T COG0305 352 LS 353 (435)
T ss_pred hh
Confidence 86
No 495
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=81.99 E-value=0.23 Score=55.14 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhc---CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC-Ce-EEEEeCc
Q 009675 243 DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVA 317 (529)
Q Consensus 243 ~~~~~~l~~~l~~~---~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-VLVaT~a 317 (529)
..++..+.+++... ...+++||+.-.....-+.-.|...|+....|.|.|+...|.+.+..|..+. .. .+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 34555555555432 1148999999999998888888888999999999999999999999998543 33 3677899
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE
Q 009675 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (529)
Q Consensus 318 ~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~ 360 (529)
.+-|+++-...+|+..|+=+++..--|.+-|+.|-|+...+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999997665544
No 496
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=81.99 E-value=7.1 Score=40.08 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=32.6
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
.--++|+|-|+.+-+.+.-.-+.+.+|..+... +.-.+.++++..+..
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQ 162 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHH
Confidence 356899999999988775544555555544433 234678899987764
No 497
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=81.93 E-value=1.4 Score=41.68 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=15.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEE
Q 009675 56 CFCLMPTGGGKSMCYQIPALAKPGIVL 82 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~~~~~l 82 (529)
.++.+|||+|||.....-+-..++.+|
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI 30 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVI 30 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEE
Confidence 468899999999765444433344333
No 498
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=81.65 E-value=6.8 Score=44.44 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCCCcHHH-------------HHHHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEE
Q 009675 26 LVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLV 83 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q-------------~~~i~~~l~------g~dvlv~apTGsGKTl~~~---lp~l~~~~~~lV 83 (529)
....+.+.||-.+.-+.. ...++.+|. |.-+.+.+|+|+|||...+ ..+...++.+++
T Consensus 14 ~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~y 93 (790)
T PRK09519 14 AVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAF 93 (790)
T ss_pred HHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 445556667755433221 223455665 3456799999999995432 333455788888
Q ss_pred eCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009675 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (529)
|..--++... .++++|+... ++++..|... ...+..+......+.+++||
T Consensus 94 Id~E~t~~~~---~A~~lGvDl~-------------------------~llv~~~~~~--E~~l~~i~~lv~~~~~~LVV 143 (790)
T PRK09519 94 IDAEHALDPD---YAKKLGVDTD-------------------------SLLVSQPDTG--EQALEIADMLIRSGALDIVV 143 (790)
T ss_pred ECCccchhHH---HHHHcCCChh-------------------------HeEEecCCCH--HHHHHHHHHHhhcCCCeEEE
Confidence 8877666532 4555554321 1223332211 12333334444456799999
Q ss_pred Eecccccc
Q 009675 164 IDEAHCIS 171 (529)
Q Consensus 164 iDEaH~~~ 171 (529)
||-+-.+.
T Consensus 144 IDSI~aL~ 151 (790)
T PRK09519 144 IDSVAALV 151 (790)
T ss_pred Ecchhhhc
Confidence 99988765
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.62 E-value=5.2 Score=43.16 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.1
Q ss_pred cCCCEEEEcCCCchHHHHHH-H--HHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-l--p~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
.|+-++|.+|+|+|||...+ + -.+.. +..+++|+-- +-..+..+.+.++|.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCC
Confidence 35778999999999995433 2 33344 5678888743 444566666777664
No 500
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.52 E-value=4.7 Score=43.06 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT 202 (529)
+...++||||+|.+..- ....|.......|..-+++++++
T Consensus 120 ~~~kvvIIdead~lt~~------~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE------AFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred CCCEEEEEecHHhhCHH------HHHHHHHHhhcCCCCceEEEEeC
Confidence 45679999999998642 22445555555554444445444
Done!