Query 009675
Match_columns 529
No_of_seqs 367 out of 3028
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 6.7E-74 2.3E-78 624.4 41.3 405 18-462 24-435 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 6.2E-73 2.1E-77 610.3 41.9 403 15-462 2-407 (523)
3 2db3_A ATP-dependent RNA helic 100.0 6.8E-52 2.3E-56 437.4 37.1 341 15-374 56-417 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 4.4E-51 1.5E-55 446.6 31.9 345 21-378 27-411 (579)
5 2i4i_A ATP-dependent RNA helic 100.0 3.7E-50 1.3E-54 420.9 34.3 347 15-378 15-396 (417)
6 3i5x_A ATP-dependent RNA helic 100.0 1.2E-50 4.3E-55 441.6 31.5 345 21-378 78-462 (563)
7 2j0s_A ATP-dependent RNA helic 100.0 1.3E-49 4.3E-54 416.3 36.4 349 12-379 34-397 (410)
8 1s2m_A Putative ATP-dependent 100.0 5.3E-49 1.8E-53 410.1 35.2 346 14-379 20-379 (400)
9 1xti_A Probable ATP-dependent 100.0 1.2E-48 4.2E-53 405.7 35.8 344 15-376 8-369 (391)
10 3eiq_A Eukaryotic initiation f 100.0 5.1E-49 1.7E-53 411.7 29.5 348 14-379 39-401 (414)
11 3fht_A ATP-dependent RNA helic 100.0 3.2E-48 1.1E-52 405.1 34.2 346 11-379 21-394 (412)
12 3pey_A ATP-dependent RNA helic 100.0 6.3E-48 2.1E-52 400.2 34.0 342 15-377 5-369 (395)
13 1hv8_A Putative ATP-dependent 100.0 1.8E-47 6.2E-52 392.7 37.1 342 15-379 6-359 (367)
14 2z0m_A 337AA long hypothetical 100.0 1.3E-47 4.4E-52 389.5 31.4 326 22-375 1-332 (337)
15 1fuu_A Yeast initiation factor 100.0 6.3E-49 2.2E-53 408.0 19.0 344 14-377 20-378 (394)
16 3oiy_A Reverse gyrase helicase 100.0 5.9E-47 2E-51 397.0 28.5 330 23-377 7-375 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 8.8E-48 3E-52 411.1 14.7 341 13-376 90-458 (479)
18 4a4z_A Antiviral helicase SKI2 100.0 6.9E-45 2.4E-49 416.3 30.1 385 24-461 26-577 (997)
19 4gl2_A Interferon-induced heli 100.0 3.7E-46 1.3E-50 416.5 18.7 320 38-366 7-520 (699)
20 3fho_A ATP-dependent RNA helic 100.0 4.7E-46 1.6E-50 400.2 14.4 343 17-379 121-485 (508)
21 2ykg_A Probable ATP-dependent 100.0 5.2E-45 1.8E-49 407.0 18.9 329 28-373 4-524 (696)
22 4a2p_A RIG-I, retinoic acid in 100.0 8.5E-42 2.9E-46 370.5 27.9 320 35-370 4-513 (556)
23 3l9o_A ATP-dependent RNA helic 100.0 5.4E-42 1.8E-46 395.7 26.8 336 16-377 163-610 (1108)
24 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-41 5.3E-46 391.8 30.5 331 24-377 65-502 (1104)
25 2p6r_A Afuhel308 helicase; pro 100.0 7.4E-42 2.5E-46 381.6 26.8 328 17-368 3-391 (702)
26 2va8_A SSO2462, SKI2-type heli 100.0 2.1E-41 7.2E-46 378.9 30.1 325 15-366 8-409 (715)
27 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-41 6.2E-46 388.0 27.6 319 32-369 242-753 (936)
28 2zj8_A DNA helicase, putative 100.0 2.6E-41 8.7E-46 378.3 27.2 325 17-368 3-390 (720)
29 3tbk_A RIG-I helicase domain; 100.0 4E-41 1.4E-45 364.7 24.6 316 38-371 4-513 (555)
30 2xgj_A ATP-dependent RNA helic 100.0 3.8E-40 1.3E-44 377.3 31.1 321 31-377 80-512 (1010)
31 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-40 1.5E-44 372.2 30.6 323 30-369 240-753 (797)
32 1tf5_A Preprotein translocase 100.0 1.7E-39 5.8E-44 355.3 33.5 321 30-367 76-547 (844)
33 1wp9_A ATP-dependent RNA helic 100.0 3.7E-39 1.3E-43 342.1 34.4 314 38-369 9-479 (494)
34 1gm5_A RECG; helicase, replica 100.0 5.8E-41 2E-45 373.1 21.2 317 23-366 354-698 (780)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 3.7E-41 1.3E-45 388.6 15.3 325 24-378 44-467 (1054)
36 2eyq_A TRCF, transcription-rep 100.0 3.3E-38 1.1E-42 366.2 37.4 323 18-366 584-923 (1151)
37 4f92_B U5 small nuclear ribonu 100.0 8.9E-38 3E-42 372.4 28.8 337 24-377 913-1320(1724)
38 2oca_A DAR protein, ATP-depend 100.0 1.3E-38 4.3E-43 342.8 17.7 301 38-365 113-455 (510)
39 2jlq_A Serine protease subunit 100.0 4.8E-39 1.6E-43 340.5 14.1 284 35-364 1-310 (451)
40 1nkt_A Preprotein translocase 100.0 1.8E-36 6.1E-41 330.9 31.8 326 28-367 102-619 (922)
41 2fsf_A Preprotein translocase 100.0 4.4E-37 1.5E-41 335.4 26.6 319 28-367 65-585 (853)
42 2wv9_A Flavivirin protease NS2 100.0 5.8E-39 2E-43 352.8 9.9 287 38-373 215-544 (673)
43 4f92_B U5 small nuclear ribonu 100.0 3.8E-37 1.3E-41 367.0 23.9 333 28-377 68-485 (1724)
44 1yks_A Genome polyprotein [con 100.0 1.6E-38 5.5E-43 335.2 9.8 278 49-375 4-312 (440)
45 2whx_A Serine protease/ntpase/ 100.0 3.7E-38 1.3E-42 344.2 12.7 308 20-375 155-491 (618)
46 2fwr_A DNA repair protein RAD2 100.0 9.6E-38 3.3E-42 332.7 15.3 288 38-361 93-448 (472)
47 2xau_A PRE-mRNA-splicing facto 100.0 2.9E-36 9.8E-41 337.2 22.0 327 14-367 71-445 (773)
48 2z83_A Helicase/nucleoside tri 100.0 4.4E-37 1.5E-41 326.0 10.3 268 48-365 16-313 (459)
49 3o8b_A HCV NS3 protease/helica 100.0 8.2E-37 2.8E-41 331.4 12.5 277 38-368 217-517 (666)
50 2v6i_A RNA helicase; membrane, 100.0 6.3E-36 2.2E-40 314.6 16.1 266 52-363 1-288 (431)
51 3h1t_A Type I site-specific re 100.0 4.5E-35 1.5E-39 320.7 22.5 305 38-364 178-557 (590)
52 3rc3_A ATP-dependent RNA helic 100.0 8E-34 2.7E-38 311.3 28.6 287 49-379 151-458 (677)
53 3dmq_A RNA polymerase-associat 100.0 5E-34 1.7E-38 327.0 26.4 315 38-363 153-611 (968)
54 3jux_A Protein translocase sub 100.0 2.4E-32 8.1E-37 292.4 33.2 334 27-378 65-607 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 9.9E-32 3.4E-36 288.3 25.6 298 38-361 37-447 (500)
56 1z3i_X Similar to RAD54-like; 100.0 4E-29 1.4E-33 275.4 33.3 310 38-361 55-522 (644)
57 3mwy_W Chromo domain-containin 100.0 6.4E-29 2.2E-33 280.4 22.6 315 37-365 235-684 (800)
58 1c4o_A DNA nucleotide excision 100.0 5.1E-28 1.8E-32 266.6 27.9 201 160-374 327-559 (664)
59 3fe2_A Probable ATP-dependent 99.9 6.6E-27 2.3E-31 226.8 20.4 192 14-224 28-236 (242)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.9E-27 2.3E-31 266.5 23.2 311 23-355 250-695 (1038)
61 3iuy_A Probable ATP-dependent 99.9 6.7E-27 2.3E-31 224.5 19.0 185 20-222 25-225 (228)
62 2hjv_A ATP-dependent RNA helic 99.9 1.3E-26 4.5E-31 210.9 19.8 152 226-378 4-155 (163)
63 2d7d_A Uvrabc system protein B 99.9 4.3E-26 1.5E-30 251.2 27.4 203 160-374 333-565 (661)
64 2rb4_A ATP-dependent RNA helic 99.9 3.5E-26 1.2E-30 210.6 19.2 150 230-379 6-161 (175)
65 1q0u_A Bstdead; DEAD protein, 99.9 2.2E-26 7.6E-31 219.5 17.7 198 15-231 4-217 (219)
66 3ly5_A ATP-dependent RNA helic 99.9 3.2E-26 1.1E-30 224.8 19.1 184 15-215 52-254 (262)
67 3eaq_A Heat resistant RNA depe 99.9 5E-26 1.7E-30 216.2 19.3 138 243-380 16-153 (212)
68 2pl3_A Probable ATP-dependent 99.9 7.6E-26 2.6E-30 218.3 19.6 191 14-224 24-231 (236)
69 1vec_A ATP-dependent RNA helic 99.9 5.7E-26 2E-30 214.2 18.3 189 15-222 3-204 (206)
70 3ber_A Probable ATP-dependent 99.9 7.6E-26 2.6E-30 220.4 19.3 193 12-223 40-245 (249)
71 1fuk_A Eukaryotic initiation f 99.9 7.1E-26 2.4E-30 206.5 16.5 148 232-379 4-151 (165)
72 1t5i_A C_terminal domain of A 99.9 1.7E-25 5.7E-30 205.4 17.6 147 231-378 5-152 (172)
73 1t6n_A Probable ATP-dependent 99.9 2.4E-25 8.1E-30 212.4 19.1 192 15-223 14-218 (220)
74 2oxc_A Probable ATP-dependent 99.9 1.6E-25 5.3E-30 215.4 17.7 191 14-223 23-226 (230)
75 3bor_A Human initiation factor 99.9 1.7E-25 5.7E-30 216.2 18.0 193 13-223 28-232 (237)
76 2ipc_A Preprotein translocase 99.9 6.3E-24 2.1E-28 231.5 31.8 330 26-378 68-718 (997)
77 1qde_A EIF4A, translation init 99.9 2.9E-25 1E-29 212.3 18.2 190 14-223 13-214 (224)
78 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.3E-25 7.8E-30 207.0 16.9 151 228-379 16-167 (185)
79 2gxq_A Heat resistant RNA depe 99.9 6.7E-25 2.3E-29 206.9 19.9 189 16-223 2-203 (207)
80 3dkp_A Probable ATP-dependent 99.9 2.1E-25 7.2E-30 216.5 15.2 189 20-225 34-240 (245)
81 1wrb_A DJVLGB; RNA helicase, D 99.9 2.5E-25 8.7E-30 217.0 14.3 195 13-224 21-238 (253)
82 2p6n_A ATP-dependent RNA helic 99.9 9.2E-25 3.1E-29 203.9 17.3 146 229-376 27-173 (191)
83 3fmo_B ATP-dependent RNA helic 99.9 3.8E-25 1.3E-29 221.3 14.9 190 12-224 89-296 (300)
84 3i32_A Heat resistant RNA depe 99.9 1.3E-24 4.6E-29 216.4 18.2 138 243-380 13-150 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.6E-26 5.3E-31 211.9 0.0 148 230-377 2-149 (170)
86 2vl7_A XPD; helicase, unknown 99.9 9.7E-22 3.3E-26 212.2 21.4 76 34-110 4-83 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 1.3E-18 4.5E-23 188.3 25.2 316 35-365 1-531 (551)
88 3b6e_A Interferon-induced heli 99.8 3.3E-19 1.1E-23 168.6 9.5 157 34-202 29-216 (216)
89 1z5z_A Helicase of the SNF2/RA 99.7 4.1E-18 1.4E-22 167.4 11.3 123 243-365 95-224 (271)
90 1rif_A DAR protein, DNA helica 99.7 9.9E-18 3.4E-22 165.9 11.6 145 38-207 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.7 1.8E-17 6E-22 159.9 12.9 139 38-207 93-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 9E-16 3.1E-20 167.7 24.7 163 195-365 377-584 (620)
93 3llm_A ATP-dependent RNA helic 99.6 1.2E-15 4.2E-20 146.7 14.1 152 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.4 2.1E-06 7E-11 93.5 13.4 78 23-100 134-218 (608)
95 4b3f_X DNA-binding protein smu 98.0 4.5E-05 1.5E-09 83.7 13.1 71 37-107 188-262 (646)
96 2gk6_A Regulator of nonsense t 97.8 0.0002 6.7E-09 78.2 14.2 70 36-105 178-251 (624)
97 2xzl_A ATP-dependent helicase 97.6 0.00032 1.1E-08 78.5 13.3 70 36-105 358-431 (802)
98 2wjy_A Regulator of nonsense t 97.6 0.00038 1.3E-08 77.8 13.2 69 37-105 355-427 (800)
99 3e1s_A Exodeoxyribonuclease V, 97.5 0.00019 6.6E-09 77.3 8.7 59 38-96 189-250 (574)
100 3upu_A ATP-dependent DNA helic 97.4 0.00045 1.5E-08 72.5 10.0 64 34-97 21-93 (459)
101 3lfu_A DNA helicase II; SF1 he 97.1 0.049 1.7E-06 59.2 22.5 63 37-101 8-77 (647)
102 3hgt_A HDA1 complex subunit 3; 97.0 0.0024 8.2E-08 63.0 9.7 120 245-370 113-242 (328)
103 3ec2_A DNA replication protein 96.6 0.012 4E-07 52.8 10.5 30 41-70 17-55 (180)
104 3vkw_A Replicase large subunit 96.2 0.012 4.2E-07 60.6 9.1 45 55-101 163-207 (446)
105 3te6_A Regulatory protein SIR3 96.0 0.083 2.9E-06 52.1 13.5 18 53-70 45-62 (318)
106 2qby_B CDC6 homolog 3, cell di 95.8 0.059 2E-06 54.2 11.8 17 54-70 46-62 (384)
107 2o0j_A Terminase, DNA packagin 95.6 0.092 3.2E-06 53.2 12.1 63 38-100 163-230 (385)
108 2b8t_A Thymidine kinase; deoxy 95.2 0.014 5E-07 54.6 4.3 36 53-88 12-50 (223)
109 3vfd_A Spastin; ATPase, microt 95.1 0.073 2.5E-06 54.1 9.7 33 53-85 148-180 (389)
110 3eie_A Vacuolar protein sortin 95.0 0.084 2.9E-06 52.1 9.7 55 13-71 13-69 (322)
111 2p65_A Hypothetical protein PF 95.0 0.047 1.6E-06 48.4 7.1 18 53-70 43-60 (187)
112 2chg_A Replication factor C sm 94.9 0.29 9.9E-06 44.3 12.6 41 158-204 102-142 (226)
113 2r6a_A DNAB helicase, replicat 94.9 0.068 2.3E-06 55.6 9.0 125 46-172 192-327 (454)
114 3syl_A Protein CBBX; photosynt 94.8 0.31 1E-05 47.3 13.2 17 54-70 68-84 (309)
115 1a5t_A Delta prime, HOLB; zinc 94.8 0.055 1.9E-06 53.8 7.8 33 39-71 3-42 (334)
116 2q6t_A DNAB replication FORK h 94.8 0.059 2E-06 55.9 8.2 154 46-202 189-362 (444)
117 4a1f_A DNAB helicase, replicat 94.8 0.07 2.4E-06 53.1 8.3 148 46-202 35-205 (338)
118 2zpa_A Uncharacterized protein 94.5 0.054 1.8E-06 58.7 7.1 55 38-92 175-231 (671)
119 1fnn_A CDC6P, cell division co 94.5 0.26 9E-06 49.3 12.1 16 55-70 46-61 (389)
120 2v1u_A Cell division control p 94.5 0.18 6E-06 50.5 10.7 18 53-70 44-61 (387)
121 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.19 6.3E-06 49.7 10.6 18 54-71 46-63 (322)
122 1l8q_A Chromosomal replication 94.4 0.11 3.6E-06 51.3 8.7 19 53-71 37-55 (324)
123 2kjq_A DNAA-related protein; s 94.3 0.11 3.8E-06 45.1 7.6 18 52-69 35-52 (149)
124 3bos_A Putative DNA replicatio 94.3 0.16 5.6E-06 47.0 9.3 18 53-70 52-69 (242)
125 1gm5_A RECG; helicase, replica 94.3 0.094 3.2E-06 58.3 8.6 78 258-335 417-499 (780)
126 3co5_A Putative two-component 94.2 0.14 4.8E-06 43.9 8.0 20 51-70 25-44 (143)
127 3h4m_A Proteasome-activating n 94.2 0.1 3.6E-06 50.2 8.0 54 15-71 14-69 (285)
128 3cpe_A Terminase, DNA packagin 94.2 0.2 6.7E-06 54.0 10.9 63 38-100 163-230 (592)
129 3cf0_A Transitional endoplasmi 94.1 0.33 1.1E-05 47.3 11.5 21 52-72 48-68 (301)
130 1g5t_A COB(I)alamin adenosyltr 94.1 0.065 2.2E-06 48.8 5.7 131 54-206 29-165 (196)
131 3b9p_A CG5977-PA, isoform A; A 94.1 0.3 1E-05 47.2 11.0 19 53-71 54-72 (297)
132 1d2n_A N-ethylmaleimide-sensit 94.0 0.11 3.7E-06 49.8 7.6 18 54-71 65-82 (272)
133 2qp9_X Vacuolar protein sortin 94.0 0.27 9.1E-06 49.3 10.8 18 54-71 85-102 (355)
134 1jbk_A CLPB protein; beta barr 94.0 1.4 4.7E-05 38.6 14.6 17 54-70 44-60 (195)
135 2zan_A Vacuolar protein sortin 93.9 0.21 7.1E-06 51.8 10.0 18 54-71 168-185 (444)
136 1sxj_A Activator 1 95 kDa subu 93.9 0.12 4.3E-06 54.6 8.5 43 158-204 148-190 (516)
137 1sxj_B Activator 1 37 kDa subu 93.7 0.22 7.7E-06 48.4 9.3 16 55-70 44-59 (323)
138 2orw_A Thymidine kinase; TMTK, 93.6 0.14 4.9E-06 46.1 7.2 37 52-88 2-41 (184)
139 2qby_A CDC6 homolog 1, cell di 93.6 0.26 9E-06 49.1 9.9 18 53-70 45-62 (386)
140 1njg_A DNA polymerase III subu 93.3 1.3 4.3E-05 40.5 13.5 40 159-204 127-166 (250)
141 3pvs_A Replication-associated 93.3 0.19 6.7E-06 52.0 8.4 20 54-73 51-70 (447)
142 3oiy_A Reverse gyrase helicase 93.1 0.16 5.4E-06 51.8 7.4 79 256-334 62-147 (414)
143 3d8b_A Fidgetin-like protein 1 93.0 0.29 9.9E-06 49.0 9.1 30 53-82 117-146 (357)
144 2j9r_A Thymidine kinase; TK1, 93.0 0.16 5.5E-06 46.9 6.5 36 54-89 29-67 (214)
145 2dr3_A UPF0273 protein PH0284; 93.0 1.3 4.5E-05 41.0 13.2 51 52-103 22-75 (247)
146 3u61_B DNA polymerase accessor 93.0 0.32 1.1E-05 47.7 9.2 42 158-205 105-147 (324)
147 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.37 1.3E-05 45.4 9.2 19 53-71 39-57 (262)
148 3bh0_A DNAB-like replicative h 92.8 1.2 4.1E-05 43.6 13.1 122 46-172 57-195 (315)
149 2gno_A DNA polymerase III, gam 92.8 0.21 7.2E-06 48.9 7.6 42 157-204 81-122 (305)
150 1uaa_A REP helicase, protein ( 92.8 0.067 2.3E-06 58.6 4.3 61 38-100 2-69 (673)
151 1pjr_A PCRA; DNA repair, DNA r 92.7 0.11 3.8E-06 57.4 5.9 62 37-100 10-78 (724)
152 1w5s_A Origin recognition comp 92.7 0.9 3.1E-05 45.8 12.4 17 54-70 51-69 (412)
153 3u4q_A ATP-dependent helicase/ 92.6 0.15 5.1E-06 59.9 7.0 61 38-100 10-79 (1232)
154 1xx6_A Thymidine kinase; NESG, 92.3 0.08 2.7E-06 48.2 3.4 36 53-88 8-46 (191)
155 2qgz_A Helicase loader, putati 92.1 0.18 6.3E-06 49.4 6.0 18 53-70 152-169 (308)
156 1xp8_A RECA protein, recombina 91.8 0.97 3.3E-05 45.4 11.0 86 1-87 4-111 (366)
157 3hu3_A Transitional endoplasmi 91.7 0.62 2.1E-05 48.8 9.8 20 53-72 238-257 (489)
158 3pfi_A Holliday junction ATP-d 91.6 0.74 2.5E-05 45.3 9.9 18 54-71 56-73 (338)
159 4ddu_A Reverse gyrase; topoiso 91.4 0.31 1E-05 56.4 7.8 79 256-334 119-204 (1104)
160 4b4t_J 26S protease regulatory 91.4 0.25 8.5E-06 50.2 6.2 54 14-71 144-200 (405)
161 2r2a_A Uncharacterized protein 91.4 0.11 3.7E-06 47.7 3.2 17 55-71 7-23 (199)
162 3bgw_A DNAB-like replicative h 90.8 1.7 5.8E-05 44.8 12.0 150 46-202 186-359 (444)
163 3t15_A Ribulose bisphosphate c 90.8 0.38 1.3E-05 46.7 6.7 18 54-71 37-54 (293)
164 2cvh_A DNA repair and recombin 90.8 0.28 9.7E-06 44.8 5.5 32 53-85 20-52 (220)
165 1lv7_A FTSH; alpha/beta domain 90.7 1.2 3.9E-05 42.0 10.0 19 53-71 45-63 (257)
166 1sxj_D Activator 1 41 kDa subu 90.7 2.1 7.1E-05 42.1 12.3 17 54-70 59-75 (353)
167 1sxj_E Activator 1 40 kDa subu 90.6 0.98 3.3E-05 44.6 9.8 43 15-71 11-54 (354)
168 1jr3_A DNA polymerase III subu 90.5 2.4 8.2E-05 41.9 12.7 43 157-205 118-160 (373)
169 3dm5_A SRP54, signal recogniti 90.4 2.3 8E-05 43.7 12.5 45 55-99 102-151 (443)
170 1r6b_X CLPA protein; AAA+, N-t 90.4 0.9 3.1E-05 50.3 10.2 18 53-70 207-224 (758)
171 2z4s_A Chromosomal replication 90.4 0.75 2.6E-05 47.4 8.9 18 54-71 131-148 (440)
172 1iqp_A RFCS; clamp loader, ext 90.3 1.3 4.6E-05 42.8 10.3 43 158-206 110-152 (327)
173 2orv_A Thymidine kinase; TP4A 90.2 0.66 2.3E-05 43.3 7.4 36 53-88 19-57 (234)
174 2w0m_A SSO2452; RECA, SSPF, un 89.9 3.5 0.00012 37.4 12.4 34 52-85 22-58 (235)
175 4b4t_L 26S protease subunit RP 89.5 0.35 1.2E-05 49.7 5.4 55 13-71 176-233 (437)
176 4b4t_H 26S protease regulatory 89.3 0.48 1.6E-05 48.9 6.2 56 12-71 203-261 (467)
177 2eyq_A TRCF, transcription-rep 89.0 1.8 6.1E-05 50.3 11.5 76 257-332 651-731 (1151)
178 1sxj_C Activator 1 40 kDa subu 89.0 1.1 3.8E-05 44.2 8.7 41 158-204 110-150 (340)
179 2rb4_A ATP-dependent RNA helic 88.9 1.3 4.5E-05 39.0 8.3 80 56-138 11-92 (175)
180 3kl4_A SRP54, signal recogniti 88.9 2.3 7.9E-05 43.6 11.0 49 157-207 178-227 (433)
181 2qen_A Walker-type ATPase; unk 88.8 5.3 0.00018 38.8 13.5 17 53-69 31-47 (350)
182 2hjv_A ATP-dependent RNA helic 88.7 1.4 4.9E-05 38.3 8.2 60 77-138 34-93 (163)
183 4b4t_I 26S protease regulatory 88.4 0.75 2.6E-05 47.0 6.9 55 12-71 176-234 (437)
184 1n0w_A DNA repair protein RAD5 88.2 3.8 0.00013 37.6 11.4 35 52-86 23-66 (243)
185 4b4t_M 26S protease regulatory 88.2 0.33 1.1E-05 49.9 4.1 55 12-71 175-233 (434)
186 3ber_A Probable ATP-dependent 88.2 2.1 7.1E-05 40.2 9.5 72 257-332 110-192 (249)
187 3cf2_A TER ATPase, transitiona 88.0 0.85 2.9E-05 50.6 7.6 68 14-82 473-540 (806)
188 4b4t_K 26S protease regulatory 87.6 0.72 2.5E-05 47.3 6.2 54 14-71 168-224 (428)
189 2i1q_A DNA repair and recombin 87.5 1.6 5.6E-05 42.6 8.7 24 46-69 86-114 (322)
190 1v5w_A DMC1, meiotic recombina 87.5 0.99 3.4E-05 44.8 7.1 43 46-88 110-166 (343)
191 2p6n_A ATP-dependent RNA helic 87.5 4 0.00014 36.5 10.6 72 63-137 39-111 (191)
192 1oyw_A RECQ helicase, ATP-depe 87.4 0.97 3.3E-05 47.7 7.3 59 258-316 65-123 (523)
193 1t5i_A C_terminal domain of A 87.3 1.9 6.4E-05 37.9 8.2 60 77-138 30-89 (172)
194 1t6n_A Probable ATP-dependent 87.3 1.7 5.9E-05 39.5 8.2 72 258-332 82-164 (220)
195 1ixz_A ATP-dependent metallopr 86.9 1.9 6.4E-05 40.4 8.4 18 54-71 50-67 (254)
196 3cf2_A TER ATPase, transitiona 86.9 1.6 5.4E-05 48.4 8.8 18 54-71 239-256 (806)
197 2v1x_A ATP-dependent DNA helic 86.8 0.91 3.1E-05 48.7 6.8 59 258-316 84-144 (591)
198 1w4r_A Thymidine kinase; type 86.7 0.84 2.9E-05 41.4 5.5 34 53-87 20-57 (195)
199 1fuk_A Eukaryotic initiation f 86.6 1.7 5.9E-05 37.8 7.5 60 77-138 29-88 (165)
200 2ce7_A Cell division protein F 86.4 1.6 5.6E-05 45.3 8.2 18 54-71 50-67 (476)
201 3eaq_A Heat resistant RNA depe 86.4 2 7E-05 39.2 8.1 61 77-139 30-90 (212)
202 1vma_A Cell division protein F 86.2 6.8 0.00023 38.0 12.2 32 54-85 105-139 (306)
203 2fna_A Conserved hypothetical 86.2 8.6 0.0003 37.3 13.3 16 54-69 31-46 (357)
204 1nlf_A Regulatory protein REPA 86.1 8.1 0.00028 36.6 12.6 21 50-70 27-47 (279)
205 3cmu_A Protein RECA, recombina 86.1 1.3 4.4E-05 53.8 8.1 96 46-171 1414-1518(2050)
206 2zts_A Putative uncharacterize 86.0 0.14 4.8E-06 47.9 -0.1 56 146-202 123-181 (251)
207 1qvr_A CLPB protein; coiled co 85.4 2.4 8E-05 47.7 9.5 18 54-71 192-209 (854)
208 1u94_A RECA protein, recombina 85.4 4.2 0.00014 40.5 10.4 63 24-86 15-99 (356)
209 3n70_A Transport activator; si 85.3 0.63 2.2E-05 39.7 3.8 20 52-71 23-42 (145)
210 2z43_A DNA repair and recombin 85.2 2.1 7.1E-05 42.0 8.0 58 46-103 95-167 (324)
211 3fe2_A Probable ATP-dependent 85.0 2.3 7.8E-05 39.5 7.9 71 258-332 102-182 (242)
212 2oxc_A Probable ATP-dependent 84.9 1.5 5.3E-05 40.3 6.6 71 257-332 91-172 (230)
213 2jgn_A DBX, DDX3, ATP-dependen 84.7 2 6.8E-05 38.3 7.0 75 62-138 28-104 (185)
214 3hws_A ATP-dependent CLP prote 84.6 2.3 7.8E-05 42.3 8.1 23 52-74 50-72 (363)
215 1cr0_A DNA primase/helicase; R 83.8 13 0.00045 35.4 13.1 34 52-85 34-71 (296)
216 1q57_A DNA primase/helicase; d 83.0 10 0.00034 39.5 12.6 116 53-172 242-368 (503)
217 2dhr_A FTSH; AAA+ protein, hex 82.2 2.7 9.3E-05 43.9 7.8 18 54-71 65-82 (499)
218 3e2i_A Thymidine kinase; Zn-bi 82.0 0.93 3.2E-05 41.8 3.5 38 52-89 27-67 (219)
219 2ehv_A Hypothetical protein PH 81.6 1.6 5.5E-05 40.4 5.3 20 52-71 29-48 (251)
220 1e9r_A Conjugal transfer prote 81.5 0.85 2.9E-05 46.8 3.5 41 52-92 52-95 (437)
221 2pl3_A Probable ATP-dependent 81.2 4.6 0.00016 37.1 8.3 55 257-316 96-154 (236)
222 2gxq_A Heat resistant RNA depe 81.1 3.6 0.00012 36.8 7.3 72 257-332 71-150 (207)
223 2zr9_A Protein RECA, recombina 80.7 5.5 0.00019 39.5 9.0 42 45-86 47-97 (349)
224 1vec_A ATP-dependent RNA helic 80.6 3.9 0.00014 36.5 7.4 71 258-332 71-152 (206)
225 3iuy_A Probable ATP-dependent 80.4 2.9 9.7E-05 38.3 6.5 72 257-332 93-173 (228)
226 1ypw_A Transitional endoplasmi 80.2 2.9 9.9E-05 46.6 7.5 20 53-72 238-257 (806)
227 3ly5_A ATP-dependent RNA helic 80.0 7.7 0.00026 36.4 9.6 72 257-332 125-207 (262)
228 3i32_A Heat resistant RNA depe 79.8 6.1 0.00021 38.2 8.9 61 77-139 27-87 (300)
229 1sky_E F1-ATPase, F1-ATP synth 78.7 8.5 0.00029 39.7 9.9 31 156-193 243-273 (473)
230 2i4i_A ATP-dependent RNA helic 78.6 7.6 0.00026 38.8 9.6 60 77-138 275-334 (417)
231 3bor_A Human initiation factor 78.5 5.9 0.0002 36.5 8.1 73 257-332 97-179 (237)
232 2w58_A DNAI, primosome compone 78.3 3.2 0.00011 37.2 5.9 17 54-70 55-71 (202)
233 3io5_A Recombination and repai 78.2 2.2 7.5E-05 41.8 5.0 46 55-103 30-80 (333)
234 3b85_A Phosphate starvation-in 78.0 2.1 7.3E-05 39.1 4.7 34 37-70 6-39 (208)
235 2yhs_A FTSY, cell division pro 77.9 15 0.00052 38.2 11.5 30 55-84 295-327 (503)
236 2vhj_A Ntpase P4, P4; non- hyd 76.7 4.8 0.00016 39.5 6.9 17 53-69 123-139 (331)
237 3cmw_A Protein RECA, recombina 76.6 8.3 0.00028 46.3 10.2 88 54-171 733-823 (1706)
238 1ofh_A ATP-dependent HSL prote 76.3 5 0.00017 38.3 7.2 19 53-71 50-68 (310)
239 1qvr_A CLPB protein; coiled co 76.2 2.7 9.2E-05 47.2 5.8 17 55-71 590-606 (854)
240 2r44_A Uncharacterized protein 76.2 3 0.0001 40.7 5.5 24 48-71 41-64 (331)
241 1wrb_A DJVLGB; RNA helicase, D 75.3 7.4 0.00025 36.1 7.8 71 258-332 100-180 (253)
242 3nbx_X ATPase RAVA; AAA+ ATPas 75.2 3 0.0001 43.6 5.5 28 44-71 32-59 (500)
243 1qde_A EIF4A, translation init 74.8 2.6 9E-05 38.3 4.4 71 257-332 81-161 (224)
244 3hr8_A Protein RECA; alpha and 74.6 8.9 0.0003 38.1 8.5 45 45-89 47-100 (356)
245 3fht_A ATP-dependent RNA helic 74.3 7.8 0.00027 38.5 8.2 59 78-138 266-324 (412)
246 1hv8_A Putative ATP-dependent 74.2 8.5 0.00029 37.4 8.4 60 77-138 237-296 (367)
247 4a2p_A RIG-I, retinoic acid in 73.9 4.3 0.00015 42.4 6.4 73 258-334 55-138 (556)
248 1xti_A Probable ATP-dependent 73.4 9.2 0.00031 37.7 8.4 60 77-138 249-308 (391)
249 3pey_A ATP-dependent RNA helic 73.3 8.7 0.0003 37.8 8.2 59 78-138 243-301 (395)
250 1wp9_A ATP-dependent RNA helic 72.9 8.4 0.00029 38.9 8.2 71 257-332 51-131 (494)
251 1s2m_A Putative ATP-dependent 72.9 8.8 0.0003 38.1 8.2 60 77-138 257-316 (400)
252 1p9r_A General secretion pathw 72.7 2.5 8.5E-05 43.2 4.0 31 39-69 151-183 (418)
253 3lda_A DNA repair protein RAD5 72.7 20 0.00067 36.2 10.7 33 54-86 179-220 (400)
254 3cmu_A Protein RECA, recombina 72.6 20 0.0007 43.7 12.2 97 45-171 369-474 (2050)
255 3e70_C DPA, signal recognition 72.2 30 0.001 33.8 11.6 47 159-209 212-259 (328)
256 3hjh_A Transcription-repair-co 72.1 5.1 0.00017 41.7 6.2 50 52-101 13-62 (483)
257 1um8_A ATP-dependent CLP prote 71.9 9.2 0.00031 38.0 8.0 20 53-72 72-91 (376)
258 3eme_A Rhodanese-like domain p 71.3 3.1 0.00011 32.9 3.5 37 257-293 55-91 (103)
259 2v9p_A Replication protein E1; 71.2 2.3 7.9E-05 41.4 3.2 34 52-86 125-159 (305)
260 2j0s_A ATP-dependent RNA helic 71.1 10 0.00034 37.9 8.2 59 78-138 276-334 (410)
261 2oap_1 GSPE-2, type II secreti 70.8 3.5 0.00012 43.3 4.7 31 39-69 245-276 (511)
262 1q0u_A Bstdead; DEAD protein, 70.4 2.5 8.7E-05 38.4 3.2 55 258-316 72-134 (219)
263 3foj_A Uncharacterized protein 70.4 3.1 0.00011 32.7 3.3 37 257-293 55-91 (100)
264 3gk5_A Uncharacterized rhodane 70.3 3.1 0.00011 33.4 3.3 37 257-293 54-90 (108)
265 2x8a_A Nuclear valosin-contain 69.6 2.2 7.7E-05 40.7 2.7 54 14-71 6-62 (274)
266 2bjv_A PSP operon transcriptio 69.5 3.2 0.00011 39.0 3.8 20 52-71 28-47 (265)
267 3a8t_A Adenylate isopentenyltr 69.2 3 0.0001 41.2 3.5 17 54-70 41-57 (339)
268 3iwh_A Rhodanese-like domain p 68.8 3.9 0.00013 32.7 3.5 36 257-292 55-90 (103)
269 1kgd_A CASK, peripheral plasma 68.6 2.6 8.9E-05 37.2 2.7 20 52-71 4-23 (180)
270 1ls1_A Signal recognition part 68.0 68 0.0023 30.6 13.0 33 53-85 98-133 (295)
271 3tbk_A RIG-I helicase domain; 67.6 4.5 0.00015 42.2 4.8 71 258-332 52-133 (555)
272 2r8r_A Sensor protein; KDPD, P 67.5 46 0.0016 30.6 11.0 17 55-71 8-24 (228)
273 3exa_A TRNA delta(2)-isopenten 67.1 3.2 0.00011 40.6 3.2 18 54-71 4-21 (322)
274 2gza_A Type IV secretion syste 67.1 3.2 0.00011 41.4 3.3 20 50-69 172-191 (361)
275 2xxa_A Signal recognition part 67.0 71 0.0024 32.4 13.5 41 55-95 102-148 (433)
276 4fcw_A Chaperone protein CLPB; 66.8 3 0.0001 40.1 3.0 18 54-71 48-65 (311)
277 1lvg_A Guanylate kinase, GMP k 66.5 3.1 0.00011 37.4 2.9 19 52-70 3-21 (198)
278 2p5t_B PEZT; postsegregational 66.1 24 0.00083 32.7 9.2 18 54-71 33-50 (253)
279 4a2q_A RIG-I, retinoic acid in 66.0 9.1 0.00031 42.4 7.1 71 258-332 296-377 (797)
280 2j37_W Signal recognition part 65.4 48 0.0016 34.5 12.0 32 55-86 103-137 (504)
281 3foz_A TRNA delta(2)-isopenten 65.1 3.9 0.00013 39.9 3.3 16 55-70 12-27 (316)
282 2d7d_A Uvrabc system protein B 65.0 23 0.00077 38.3 9.8 81 77-169 444-524 (661)
283 2db3_A ATP-dependent RNA helic 64.9 15 0.00052 37.2 8.0 59 78-138 300-358 (434)
284 3g5j_A Putative ATP/GTP bindin 64.8 5.4 0.00019 32.9 3.9 36 259-294 90-126 (134)
285 1wv9_A Rhodanese homolog TT165 64.6 4.4 0.00015 31.4 3.1 35 259-293 54-88 (94)
286 2eyu_A Twitching motility prot 64.6 2.7 9.3E-05 39.9 2.1 19 51-69 23-41 (261)
287 1gvn_B Zeta; postsegregational 64.5 27 0.00094 33.2 9.4 33 54-86 34-66 (287)
288 3vaa_A Shikimate kinase, SK; s 64.5 3.8 0.00013 36.7 3.0 20 52-71 24-43 (199)
289 1tf7_A KAIC; homohexamer, hexa 64.3 34 0.0012 35.6 10.9 36 52-87 280-318 (525)
290 3nwn_A Kinesin-like protein KI 64.3 4.5 0.00015 40.3 3.7 25 46-70 96-122 (359)
291 3tau_A Guanylate kinase, GMP k 64.3 3.4 0.00012 37.4 2.7 20 52-71 7-26 (208)
292 1c4o_A DNA nucleotide excision 64.2 23 0.00078 38.3 9.6 81 77-169 438-518 (664)
293 2ffh_A Protein (FFH); SRP54, s 64.0 46 0.0016 33.8 11.3 40 55-94 100-144 (425)
294 2pt7_A CAG-ALFA; ATPase, prote 63.8 3.8 0.00013 40.4 3.0 20 50-69 168-187 (330)
295 3cmw_A Protein RECA, recombina 63.6 9.5 0.00033 45.8 6.8 89 54-172 1432-1523(1706)
296 2l82_A Designed protein OR32; 63.2 24 0.0008 28.1 6.9 110 262-376 6-124 (162)
297 4ag6_A VIRB4 ATPase, type IV s 63.2 4.8 0.00017 40.4 3.8 38 52-89 34-74 (392)
298 2yjt_D ATP-dependent RNA helic 66.9 1.5 5.3E-05 38.3 0.0 58 78-137 30-87 (170)
299 3tb6_A Arabinose metabolism tr 62.6 96 0.0033 28.6 16.6 185 88-284 31-226 (298)
300 2qmh_A HPR kinase/phosphorylas 62.5 3 0.0001 38.0 1.8 17 53-69 34-50 (205)
301 1gku_B Reverse gyrase, TOP-RG; 62.4 8.4 0.00029 44.2 6.0 75 257-333 98-182 (1054)
302 3trf_A Shikimate kinase, SK; a 62.2 4.3 0.00015 35.6 2.9 19 53-71 5-23 (185)
303 1tue_A Replication protein E1; 62.2 9.6 0.00033 34.8 5.2 44 24-70 28-75 (212)
304 4akg_A Glutathione S-transfera 62.1 9.4 0.00032 48.0 6.7 50 22-73 890-943 (2695)
305 3flh_A Uncharacterized protein 61.8 4.9 0.00017 33.1 3.0 37 257-293 70-108 (124)
306 3dkp_A Probable ATP-dependent 61.8 2.7 9.4E-05 38.9 1.6 73 258-333 98-182 (245)
307 2jtq_A Phage shock protein E; 61.7 14 0.00047 27.8 5.4 37 256-293 39-76 (85)
308 2chq_A Replication factor C sm 61.3 9.4 0.00032 36.4 5.4 50 7-70 6-55 (319)
309 1bg2_A Kinesin; motor protein, 61.0 5.7 0.00019 39.0 3.7 25 46-70 69-95 (325)
310 3fmo_B ATP-dependent RNA helic 61.0 5.2 0.00018 38.6 3.4 70 258-334 162-243 (300)
311 1ojl_A Transcriptional regulat 60.8 4.6 0.00016 39.1 3.0 20 52-71 24-43 (304)
312 2fsx_A RV0390, COG0607: rhodan 60.7 9.7 0.00033 32.3 4.8 37 257-293 79-116 (148)
313 1u0j_A DNA replication protein 60.6 7.4 0.00025 37.0 4.3 45 23-71 72-122 (267)
314 3uk6_A RUVB-like 2; hexameric 60.5 4.2 0.00014 40.2 2.7 18 54-71 71-88 (368)
315 1tf5_A Preprotein translocase 60.1 25 0.00087 38.9 9.0 73 256-334 122-211 (844)
316 3lw7_A Adenylate kinase relate 60.0 4 0.00014 35.1 2.2 16 56-71 4-19 (179)
317 3nhv_A BH2092 protein; alpha-b 59.7 6.8 0.00023 33.2 3.6 37 257-293 71-109 (144)
318 3hix_A ALR3790 protein; rhodan 59.5 6 0.0002 31.5 3.0 37 257-293 51-88 (106)
319 2fsf_A Preprotein translocase 59.5 23 0.00078 39.2 8.4 71 256-332 113-200 (853)
320 3ney_A 55 kDa erythrocyte memb 59.4 4.9 0.00017 36.4 2.7 19 52-70 18-36 (197)
321 3a00_A Guanylate kinase, GMP k 59.4 5.3 0.00018 35.3 2.9 17 54-70 2-18 (186)
322 2ze6_A Isopentenyl transferase 59.3 5 0.00017 37.7 2.9 15 56-70 4-18 (253)
323 1kag_A SKI, shikimate kinase I 59.3 6 0.00021 34.1 3.3 20 53-72 4-23 (173)
324 3sqw_A ATP-dependent RNA helic 59.2 20 0.00069 37.8 8.0 61 77-139 287-350 (579)
325 3iij_A Coilin-interacting nucl 59.2 6.2 0.00021 34.5 3.4 20 52-71 10-29 (180)
326 3tr0_A Guanylate kinase, GMP k 59.2 4.8 0.00017 35.9 2.7 19 52-70 6-24 (205)
327 3i5x_A ATP-dependent RNA helic 59.1 34 0.0012 35.8 9.7 61 77-139 338-401 (563)
328 3b6u_A Kinesin-like protein KI 59.1 6.3 0.00022 39.4 3.7 25 46-70 93-119 (372)
329 2nr8_A Kinesin-like protein KI 59.0 6.4 0.00022 39.2 3.7 25 46-70 95-121 (358)
330 2vvg_A Kinesin-2; motor protei 59.0 6.4 0.00022 39.0 3.7 24 47-70 82-107 (350)
331 3crm_A TRNA delta(2)-isopenten 59.0 5.7 0.0002 38.9 3.3 17 55-71 7-23 (323)
332 2y65_A Kinesin, kinesin heavy 59.0 6.4 0.00022 39.3 3.7 25 46-70 76-102 (365)
333 4a14_A Kinesin, kinesin-like p 58.9 6.4 0.00022 38.9 3.7 24 47-70 76-101 (344)
334 2j41_A Guanylate kinase; GMP, 58.8 4.3 0.00015 36.2 2.3 20 52-71 5-24 (207)
335 3gbj_A KIF13B protein; kinesin 58.8 6.6 0.00022 39.0 3.8 25 46-70 84-110 (354)
336 1ex7_A Guanylate kinase; subst 58.7 4.8 0.00016 36.1 2.5 16 54-69 2-17 (186)
337 3dc4_A Kinesin-like protein NO 58.7 5.9 0.0002 39.2 3.4 24 47-70 87-112 (344)
338 1qhx_A CPT, protein (chloramph 58.5 4.1 0.00014 35.5 2.0 19 53-71 3-21 (178)
339 3eiq_A Eukaryotic initiation f 58.3 11 0.00038 37.5 5.5 59 78-138 280-338 (414)
340 2qor_A Guanylate kinase; phosp 58.2 5.2 0.00018 36.0 2.7 20 51-70 10-29 (204)
341 2h58_A Kinesin-like protein KI 58.1 6.8 0.00023 38.5 3.7 26 45-70 71-98 (330)
342 1z6g_A Guanylate kinase; struc 57.6 5.9 0.0002 36.2 3.0 20 51-70 21-40 (218)
343 1hqc_A RUVB; extended AAA-ATPa 57.6 8.5 0.00029 37.1 4.4 19 53-71 38-56 (324)
344 3nwj_A ATSK2; P loop, shikimat 57.4 7.2 0.00024 36.7 3.6 22 51-72 46-67 (250)
345 3lre_A Kinesin-like protein KI 57.4 6.5 0.00022 39.1 3.5 25 46-70 97-123 (355)
346 1qxn_A SUD, sulfide dehydrogen 57.2 8.1 0.00028 32.4 3.6 37 257-293 81-118 (137)
347 1t5c_A CENP-E protein, centrom 57.1 7.2 0.00025 38.6 3.7 25 46-70 69-95 (349)
348 2zfi_A Kinesin-like protein KI 57.1 7.2 0.00025 38.9 3.7 25 46-70 81-107 (366)
349 4etp_A Kinesin-like protein KA 57.0 8 0.00027 39.1 4.1 26 46-71 132-159 (403)
350 2r62_A Cell division protease 57.0 4.1 0.00014 38.3 1.9 19 53-71 44-62 (268)
351 1y63_A LMAJ004144AAA protein; 56.8 6.2 0.00021 34.8 2.9 20 52-71 9-28 (184)
352 3vkg_A Dynein heavy chain, cyt 56.7 13 0.00045 47.3 6.7 64 22-87 873-946 (3245)
353 1x88_A Kinesin-like protein KI 56.6 6.7 0.00023 39.1 3.4 25 46-70 80-106 (359)
354 1zp6_A Hypothetical protein AT 56.5 5.1 0.00017 35.3 2.3 20 52-71 8-27 (191)
355 1goj_A Kinesin, kinesin heavy 56.5 6.7 0.00023 39.0 3.4 23 48-70 74-98 (355)
356 1gmx_A GLPE protein; transfera 56.4 7 0.00024 31.1 2.9 37 257-293 57-94 (108)
357 2k0z_A Uncharacterized protein 56.3 11 0.00037 30.2 4.1 38 256-293 54-91 (110)
358 1v8k_A Kinesin-like protein KI 56.3 7.4 0.00025 39.4 3.7 25 46-70 146-172 (410)
359 3d3q_A TRNA delta(2)-isopenten 56.3 6.7 0.00023 38.7 3.3 16 55-70 9-24 (340)
360 3jvv_A Twitching mobility prot 55.5 4.8 0.00016 40.1 2.2 18 52-69 122-139 (356)
361 2wbe_C Bipolar kinesin KRP-130 55.5 7.1 0.00024 39.1 3.4 24 47-70 93-118 (373)
362 3u06_A Protein claret segregat 55.3 7.9 0.00027 39.3 3.7 26 45-70 129-156 (412)
363 1c9k_A COBU, adenosylcobinamid 55.0 9.2 0.00032 34.0 3.7 31 56-87 2-32 (180)
364 1fuu_A Yeast initiation factor 54.9 19 0.00066 35.3 6.6 73 257-334 88-170 (394)
365 2heh_A KIF2C protein; kinesin, 54.8 7.4 0.00025 39.1 3.4 25 46-70 126-152 (387)
366 3kb2_A SPBC2 prophage-derived 54.7 6.9 0.00023 33.6 2.8 17 55-71 3-19 (173)
367 1kht_A Adenylate kinase; phosp 54.6 7 0.00024 34.2 2.9 19 53-71 3-21 (192)
368 2ewv_A Twitching motility prot 54.5 5.5 0.00019 39.9 2.4 18 52-69 135-152 (372)
369 1pzn_A RAD51, DNA repair and r 54.4 8.9 0.00031 37.9 3.9 33 54-86 132-173 (349)
370 1g41_A Heat shock protein HSLU 54.4 12 0.00039 38.5 4.8 19 53-71 50-68 (444)
371 1tq1_A AT5G66040, senescence-a 54.2 7.7 0.00026 32.1 2.9 37 257-293 81-118 (129)
372 1ly1_A Polynucleotide kinase; 53.8 5.9 0.0002 34.3 2.2 16 56-71 5-20 (181)
373 4gp7_A Metallophosphoesterase; 53.3 5.2 0.00018 34.9 1.8 20 52-71 8-27 (171)
374 1vee_A Proline-rich protein fa 53.3 17 0.00059 30.1 5.1 37 257-293 73-110 (134)
375 3b6e_A Interferon-induced heli 53.0 9.1 0.00031 34.1 3.5 56 258-317 82-141 (216)
376 3cob_A Kinesin heavy chain-lik 53.0 7.9 0.00027 38.7 3.2 25 46-70 71-97 (369)
377 2c9o_A RUVB-like 1; hexameric 52.9 6.9 0.00024 40.2 2.9 18 54-71 64-81 (456)
378 1g8p_A Magnesium-chelatase 38 52.7 7.5 0.00026 37.9 3.1 19 53-71 45-63 (350)
379 3d1p_A Putative thiosulfate su 52.7 9.3 0.00032 31.9 3.3 37 257-293 90-127 (139)
380 1nkt_A Preprotein translocase 52.6 33 0.0011 38.2 8.3 73 254-332 148-237 (922)
381 4eun_A Thermoresistant glucoki 52.6 8 0.00027 34.5 3.0 20 52-71 28-47 (200)
382 1znw_A Guanylate kinase, GMP k 52.2 8.1 0.00028 34.7 3.0 22 49-70 16-37 (207)
383 2owm_A Nckin3-434, related to 52.0 9.5 0.00032 39.1 3.7 24 47-70 129-154 (443)
384 2hhg_A Hypothetical protein RP 52.0 8.1 0.00028 32.2 2.8 37 257-293 85-122 (139)
385 2bdt_A BH3686; alpha-beta prot 51.7 12 0.0004 32.9 4.0 17 55-71 4-20 (189)
386 3t0q_A AGR253WP; kinesin, alph 51.5 7.3 0.00025 38.6 2.7 26 46-71 77-104 (349)
387 3eph_A TRNA isopentenyltransfe 51.1 7.6 0.00026 39.3 2.8 15 56-70 5-19 (409)
388 1s96_A Guanylate kinase, GMP k 50.9 7 0.00024 35.8 2.3 21 50-70 13-33 (219)
389 1f9v_A Kinesin-like protein KA 50.8 7.6 0.00026 38.5 2.7 25 47-71 77-103 (347)
390 3cm0_A Adenylate kinase; ATP-b 50.7 6.4 0.00022 34.4 2.0 20 52-71 3-22 (186)
391 1knq_A Gluconate kinase; ALFA/ 50.5 7.5 0.00025 33.7 2.4 19 53-71 8-26 (175)
392 2lci_A Protein OR36; structura 50.5 84 0.0029 24.2 12.9 107 196-316 3-109 (134)
393 1j8m_F SRP54, signal recogniti 50.1 76 0.0026 30.3 9.7 31 55-85 100-133 (297)
394 1ry6_A Internal kinesin; kines 49.7 11 0.00036 37.6 3.6 20 52-71 82-103 (360)
395 1f2t_A RAD50 ABC-ATPase; DNA d 49.7 7.6 0.00026 33.1 2.2 14 56-69 26-39 (149)
396 1in4_A RUVB, holliday junction 49.5 9.2 0.00032 37.4 3.1 18 54-71 52-69 (334)
397 3k1j_A LON protease, ATP-depen 49.4 14 0.00048 39.5 4.7 26 46-71 53-78 (604)
398 3bfn_A Kinesin-like protein KI 49.4 8.2 0.00028 38.8 2.7 30 41-70 77-116 (388)
399 2ykg_A Probable ATP-dependent 49.1 16 0.00055 39.4 5.3 72 259-334 62-144 (696)
400 3tqc_A Pantothenate kinase; bi 49.1 20 0.00068 35.0 5.4 15 56-70 95-109 (321)
401 1iy2_A ATP-dependent metallopr 48.9 13 0.00046 35.0 4.1 18 54-71 74-91 (278)
402 2ipc_A Preprotein translocase 48.7 39 0.0013 37.8 8.1 59 253-317 115-177 (997)
403 3dmq_A RNA polymerase-associat 48.6 35 0.0012 38.6 8.1 61 77-137 502-563 (968)
404 3uie_A Adenylyl-sulfate kinase 48.0 8.7 0.0003 34.3 2.5 20 52-71 24-43 (200)
405 3lnc_A Guanylate kinase, GMP k 47.7 6.4 0.00022 36.1 1.5 19 52-70 26-44 (231)
406 3qf7_A RAD50; ABC-ATPase, ATPa 47.7 7.8 0.00027 38.6 2.2 16 55-70 25-40 (365)
407 2rep_A Kinesin-like protein KI 47.5 9.2 0.00031 38.3 2.7 23 48-70 109-133 (376)
408 1via_A Shikimate kinase; struc 47.3 12 0.0004 32.5 3.1 19 54-72 5-23 (175)
409 1tev_A UMP-CMP kinase; ploop, 47.2 9.1 0.00031 33.5 2.4 19 53-71 3-21 (196)
410 3zvl_A Bifunctional polynucleo 47.2 49 0.0017 33.3 8.3 17 55-71 260-276 (416)
411 2v6i_A RNA helicase; membrane, 47.1 24 0.00082 35.8 5.9 56 78-139 171-226 (431)
412 3f9v_A Minichromosome maintena 47.1 7.5 0.00026 41.6 2.1 16 55-70 329-344 (595)
413 3t61_A Gluconokinase; PSI-biol 46.9 10 0.00036 33.7 2.8 18 54-71 19-36 (202)
414 2z0m_A 337AA long hypothetical 46.7 29 0.00098 33.1 6.2 72 258-334 56-137 (337)
415 3kta_A Chromosome segregation 46.7 8.4 0.00029 33.6 2.1 16 55-70 28-43 (182)
416 1cke_A CK, MSSA, protein (cyti 46.6 11 0.00037 34.2 2.9 19 54-72 6-24 (227)
417 3ilm_A ALR3790 protein; rhodan 46.6 13 0.00043 31.4 3.1 37 257-293 55-92 (141)
418 1zd8_A GTP:AMP phosphotransfer 46.2 11 0.00036 34.4 2.8 20 52-71 6-25 (227)
419 3fb4_A Adenylate kinase; psych 46.0 9.9 0.00034 34.2 2.5 16 56-71 3-18 (216)
420 1urh_A 3-mercaptopyruvate sulf 46.0 25 0.00085 33.2 5.5 38 257-294 229-267 (280)
421 3bs4_A Uncharacterized protein 46.0 27 0.00092 32.9 5.6 52 53-105 21-75 (260)
422 2ius_A DNA translocase FTSK; n 45.9 11 0.00038 39.3 3.2 19 52-70 166-184 (512)
423 3egc_A Putative ribose operon 45.6 1.8E+02 0.0062 26.6 14.1 180 89-284 25-211 (291)
424 2qt1_A Nicotinamide riboside k 45.3 17 0.0006 32.3 4.1 19 53-71 21-39 (207)
425 2c95_A Adenylate kinase 1; tra 45.2 12 0.0004 32.9 2.8 20 52-71 8-27 (196)
426 2oca_A DAR protein, ATP-depend 44.8 1.9E+02 0.0064 29.4 12.6 98 78-192 347-444 (510)
427 1yks_A Genome polyprotein [con 44.7 14 0.00047 37.7 3.6 56 78-139 177-232 (440)
428 1zuh_A Shikimate kinase; alpha 44.5 12 0.00042 32.0 2.8 19 54-72 8-26 (168)
429 2iyv_A Shikimate kinase, SK; t 44.5 14 0.00049 32.1 3.3 18 54-71 3-20 (184)
430 2rhm_A Putative kinase; P-loop 44.4 9.4 0.00032 33.5 2.1 19 53-71 5-23 (193)
431 3asz_A Uridine kinase; cytidin 44.4 9.2 0.00032 34.2 2.0 18 53-70 6-23 (211)
432 3c8u_A Fructokinase; YP_612366 44.2 9.8 0.00034 34.2 2.2 18 53-70 22-39 (208)
433 3dl0_A Adenylate kinase; phosp 44.2 11 0.00038 33.9 2.5 18 55-72 2-19 (216)
434 4a2w_A RIG-I, retinoic acid in 44.1 13 0.00046 41.9 3.7 72 258-333 296-378 (936)
435 1e6c_A Shikimate kinase; phosp 44.1 14 0.00048 31.6 3.2 18 54-71 3-20 (173)
436 3pxg_A Negative regulator of g 44.0 20 0.00067 36.9 4.7 19 53-71 201-219 (468)
437 2i3b_A HCR-ntpase, human cance 43.5 15 0.00052 32.7 3.3 42 157-203 104-145 (189)
438 2bwj_A Adenylate kinase 5; pho 43.0 17 0.00057 31.9 3.5 20 52-71 11-30 (199)
439 3tqf_A HPR(Ser) kinase; transf 43.0 10 0.00035 33.6 2.0 18 52-69 15-32 (181)
440 1nij_A Hypothetical protein YJ 42.9 17 0.00057 35.3 3.7 32 56-87 7-39 (318)
441 3tg1_B Dual specificity protei 42.8 15 0.00053 31.4 3.2 35 258-292 93-136 (158)
442 3a4m_A L-seryl-tRNA(SEC) kinas 42.8 20 0.0007 33.4 4.3 18 54-71 5-22 (260)
443 1qkk_A DCTD, C4-dicarboxylate 42.8 1.4E+02 0.0046 24.4 10.8 44 157-207 46-89 (155)
444 1zak_A Adenylate kinase; ATP:A 42.8 13 0.00044 33.6 2.8 19 53-71 5-23 (222)
445 1ye8_A Protein THEP1, hypothet 42.7 13 0.00046 32.6 2.8 16 55-70 2-17 (178)
446 4akg_A Glutathione S-transfera 42.4 18 0.00061 45.6 4.6 20 51-70 1265-1284(2695)
447 3auy_A DNA double-strand break 42.3 10 0.00035 37.8 2.1 14 56-69 28-41 (371)
448 4gl2_A Interferon-induced heli 42.2 21 0.00072 38.5 4.8 58 78-137 400-471 (699)
449 1qf9_A UMP/CMP kinase, protein 42.0 13 0.00046 32.3 2.7 17 55-71 8-24 (194)
450 1nks_A Adenylate kinase; therm 41.9 14 0.00047 32.2 2.7 15 56-70 4-18 (194)
451 1wik_A Thioredoxin-like protei 41.8 1.2E+02 0.004 23.7 8.2 54 259-312 15-74 (109)
452 3m6a_A ATP-dependent protease 41.6 17 0.00057 38.3 3.8 19 53-71 108-126 (543)
453 2qxy_A Response regulator; reg 41.6 1.3E+02 0.0045 23.9 11.8 45 157-209 47-91 (142)
454 2v54_A DTMP kinase, thymidylat 41.5 15 0.00052 32.4 3.0 20 52-71 3-22 (204)
455 3nh6_A ATP-binding cassette SU 41.5 12 0.00042 36.2 2.5 19 52-70 79-97 (306)
456 4f67_A UPF0176 protein LPG2838 41.4 24 0.00084 33.3 4.5 46 248-293 171-217 (265)
457 4e22_A Cytidylate kinase; P-lo 41.4 15 0.0005 34.3 3.0 20 53-72 27-46 (252)
458 2qr3_A Two-component system re 41.2 1.3E+02 0.0045 23.7 9.1 47 158-207 47-94 (140)
459 1rj9_A FTSY, signal recognitio 41.1 16 0.00056 35.2 3.4 33 53-85 102-137 (304)
460 1aky_A Adenylate kinase; ATP:A 41.1 15 0.00053 33.1 3.0 19 53-71 4-22 (220)
461 2pez_A Bifunctional 3'-phospho 41.0 12 0.00042 32.5 2.2 19 52-70 4-22 (179)
462 2if2_A Dephospho-COA kinase; a 40.8 15 0.0005 32.7 2.8 18 55-72 3-20 (204)
463 2va8_A SSO2462, SKI2-type heli 40.8 92 0.0031 33.6 9.7 66 72-139 246-347 (715)
464 1jjv_A Dephospho-COA kinase; P 40.6 15 0.00051 32.7 2.8 17 56-72 5-21 (206)
465 2f1r_A Molybdopterin-guanine d 40.4 11 0.00037 33.1 1.7 16 55-70 4-19 (171)
466 2cdn_A Adenylate kinase; phosp 40.2 17 0.00057 32.3 3.0 18 54-71 21-38 (201)
467 3l9o_A ATP-dependent RNA helic 40.1 21 0.0007 41.2 4.5 65 257-332 226-296 (1108)
468 3ipz_A Monothiol glutaredoxin- 40.1 1.3E+02 0.0045 23.5 8.4 57 258-314 17-79 (109)
469 3tif_A Uncharacterized ABC tra 39.8 14 0.0005 34.1 2.6 19 52-70 30-48 (235)
470 4a74_A DNA repair and recombin 39.6 13 0.00045 33.5 2.3 20 52-71 24-43 (231)
471 1ukz_A Uridylate kinase; trans 39.3 13 0.00045 33.0 2.2 16 55-70 17-32 (203)
472 2pt5_A Shikimate kinase, SK; a 39.1 17 0.00059 30.9 2.9 17 55-71 2-18 (168)
473 1uf9_A TT1252 protein; P-loop, 39.0 16 0.00055 32.2 2.7 18 55-72 10-27 (203)
474 2jaq_A Deoxyguanosine kinase; 38.6 17 0.00058 32.0 2.9 15 56-70 3-17 (205)
475 1m7g_A Adenylylsulfate kinase; 38.5 15 0.00052 32.9 2.5 20 51-70 23-42 (211)
476 4h1g_A Maltose binding protein 38.3 19 0.00066 39.3 3.7 26 45-70 453-480 (715)
477 1ak2_A Adenylate kinase isoenz 38.3 18 0.00062 33.0 3.0 19 53-71 16-34 (233)
478 3qks_A DNA double-strand break 38.2 14 0.00049 33.2 2.2 16 55-70 25-40 (203)
479 2yvu_A Probable adenylyl-sulfa 38.0 16 0.00055 31.9 2.5 19 53-71 13-31 (186)
480 2fwr_A DNA repair protein RAD2 38.0 21 0.00071 36.5 3.7 62 258-332 133-198 (472)
481 1e0c_A Rhodanese, sulfurtransf 37.8 21 0.00073 33.4 3.5 37 256-292 221-258 (271)
482 3dmn_A Putative DNA helicase; 37.8 1.5E+02 0.0053 25.3 9.1 65 257-336 60-124 (174)
483 1svm_A Large T antigen; AAA+ f 37.8 18 0.00061 36.2 3.1 19 52-70 168-186 (377)
484 1xjc_A MOBB protein homolog; s 37.8 40 0.0014 29.4 5.1 14 56-69 7-20 (169)
485 3tlx_A Adenylate kinase 2; str 37.6 14 0.00049 34.1 2.3 19 53-71 29-47 (243)
486 2vli_A Antibiotic resistance p 37.5 13 0.00045 32.2 1.9 20 53-72 5-24 (183)
487 2bbw_A Adenylate kinase 4, AK4 37.5 18 0.00061 33.4 2.9 18 53-70 27-44 (246)
488 3sr0_A Adenylate kinase; phosp 37.5 18 0.00062 32.7 2.8 16 56-71 3-18 (206)
489 3be4_A Adenylate kinase; malar 37.4 18 0.00062 32.6 2.9 19 53-71 5-23 (217)
490 2plr_A DTMP kinase, probable t 37.3 16 0.00056 32.3 2.5 20 52-71 3-22 (213)
491 2cbz_A Multidrug resistance-as 37.2 17 0.00058 33.6 2.6 18 52-69 30-47 (237)
492 3umf_A Adenylate kinase; rossm 37.2 19 0.00064 33.0 2.9 18 53-70 29-46 (217)
493 2l8b_A Protein TRAI, DNA helic 37.2 65 0.0022 28.6 6.2 52 41-92 37-94 (189)
494 1urh_A 3-mercaptopyruvate sulf 37.1 34 0.0012 32.2 4.9 38 256-293 84-123 (280)
495 2wwf_A Thymidilate kinase, put 37.0 18 0.00062 32.1 2.8 19 52-70 9-27 (212)
496 3pxi_A Negative regulator of g 36.8 28 0.00094 38.2 4.7 19 53-71 201-219 (758)
497 2wv9_A Flavivirin protease NS2 36.7 34 0.0011 37.1 5.3 56 78-139 410-465 (673)
498 1sgw_A Putative ABC transporte 36.7 20 0.0007 32.6 3.1 19 52-70 34-52 (214)
499 1uar_A Rhodanese; sulfurtransf 36.6 29 0.001 32.7 4.3 45 248-292 220-269 (285)
500 2px0_A Flagellar biosynthesis 36.6 18 0.0006 34.8 2.7 18 53-70 105-122 (296)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.7e-74 Score=624.44 Aligned_cols=405 Identities=37% Similarity=0.674 Sum_probs=366.4
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHH
Q 009675 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~ 97 (529)
.++++++.+...|++.|||.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+++|||+|+++|+.||++.
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEecccccccCCCC
Q 009675 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (529)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~ 176 (529)
+.++|+.+..++++.........+..+.......+++|+|||.+.++ .++..+........+++||||||||+++|||+
T Consensus 104 l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~d 183 (591)
T 2v1x_A 104 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD 183 (591)
T ss_dssp HHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTT
T ss_pred HHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccc
Confidence 99999999999999998888777777755556699999999998764 56666766667788999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCc-hhhHHHHHHHHHHh
Q 009675 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA 255 (529)
Q Consensus 177 fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~-~~~~~~~l~~~l~~ 255 (529)
||+.|..|..++..+|++|+++||||+++.+..++...+++..+..+..+++++|+.+.+..... ..+.+..|.++++.
T Consensus 184 fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 184 FRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp CCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887643 34567788888865
Q ss_pred -cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC
Q 009675 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 256 -~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
..+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||+
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc----ccchH
Q 009675 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV----AGKRF 410 (529)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~Crr 410 (529)
+|.|++.|+||+|||||+|++|.|+++|++.|...++.++... ......+..|+.| ..|||
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Crr 408 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCRR 408 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCHH
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999999999999999998888876432 1223556777777 78999
Q ss_pred HHHhcccCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCCh
Q 009675 411 SRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 462 (529)
Q Consensus 411 ~~il~~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~ 462 (529)
..+++ || ||.+.+..|+++||||..+.
T Consensus 409 ~~ll~-----------------------~f--~e~~~~~~c~~~Cd~C~~~~ 435 (591)
T 2v1x_A 409 VLMAQ-----------------------HF--DEVWNSEACNKMCDNCCKDS 435 (591)
T ss_dssp HHHHH-----------------------HH--TCCC---CCCSCBHHHHCCC
T ss_pred HHHHH-----------------------Hc--CCCCCccccCCCCCCCCCCC
Confidence 99999 99 99876678988899998864
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.2e-73 Score=610.34 Aligned_cols=403 Identities=40% Similarity=0.694 Sum_probs=365.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~ 94 (529)
..|+.+++++++...|++.||+.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+.+|||+|+++|+.||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCC
Q 009675 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (529)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g 174 (529)
++.++++|+.+..+++.............+..+. .+++|+|||.+.++.+...+ ....+++|||||||++++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l----~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHL----AHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHH----TTSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHH----hhCCCCEEEEeCccccCcCC
Confidence 9999999999999999988887777777777665 89999999999877655443 23579999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHH
Q 009675 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (529)
Q Consensus 175 ~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~ 254 (529)
|+||+.|..|..++..+|+.|+++||||+++.+..++...+++..+.++..++.++|+.+.+.... ++...+.++++
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888764 56677888888
Q ss_pred hcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC
Q 009675 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (529)
Q Consensus 255 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~ 334 (529)
...+.++||||+|++.++.+++.|++.|+.+..|||+|++++|..+++.|.+|+.+|||||++++||||+|+|++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 87788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccCCCCccchHHhhhHHHHHHHHHhhhc---ccchHH
Q 009675 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDV---AGKRFS 411 (529)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Crr~ 411 (529)
+|+|++.|+||+|||||+|++|.|+++|++.|...+++++..... .+........+..|+.| ..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999988876211 11223445667778877 899999
Q ss_pred HHhcccCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCCh
Q 009675 412 RVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPN 462 (529)
Q Consensus 412 ~il~~~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~~ 462 (529)
.++. || ||... .+|+ .||||..+.
T Consensus 384 ~l~~-----------------------~f--~e~~~-~~c~-~cd~c~~~~ 407 (523)
T 1oyw_A 384 VLLN-----------------------YF--GEGRQ-EPCG-NCDICLDPP 407 (523)
T ss_dssp HHHH-----------------------HT--TCCCC-SCCS-CBHHHHSCC
T ss_pred hhHh-----------------------hc--CCCCC-CCCC-CCCCCCCCc
Confidence 9999 99 88864 5798 599998754
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.8e-52 Score=437.35 Aligned_cols=341 Identities=19% Similarity=0.275 Sum_probs=273.7
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEE
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLV 83 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----------~~~~lV 83 (529)
..|.++++++.+.+.|++ +||.+|+|+|+++|+.+++|+|++++||||+|||++|++|++.. ++++||
T Consensus 56 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 456778999999999997 79999999999999999999999999999999999999998742 468999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccC
Q 009675 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~ 157 (529)
++||++|+.|+.+.+++++ +....+.++........ .+.. ..+++++||+.+ ..+.. .....
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv~Tp~~l------~~~l~~~~~~l~ 202 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVIATPGRL------LDFVDRTFITFE 202 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEEECHHHH------HHHHHTTSCCCT
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEEEChHHH------HHHHHhCCcccc
Confidence 9999999999999999854 55666666665544322 1222 367776666544 23322 23456
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC---CCCccEE
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFY 234 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl~~ 234 (529)
.++++|+||||++.+|| |++.+..+.......++.+++++|||+++.+.......+ .++..+.... ...++..
T Consensus 203 ~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL--KNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEEEEESSTTCCCTTEEE
T ss_pred cCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc--cCCEEEEeccccccccccce
Confidence 78999999999999998 888777765443345688999999999998876544433 4555443322 2334444
Q ss_pred EEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
.+.... ...+...|.+++...... +||||++++.++.+++.|.+.|+.+..+||++++++|.++++.|++|+.+||||
T Consensus 279 ~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 444332 245677888888876654 999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc-cHHHHHHHH
Q 009675 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (529)
Q Consensus 315 T~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~-d~~~~~~i~ 374 (529)
|+++++|||+|+|++||+||+|.+.+.|+||+||+||.|+.|.+++|++++ |...+..+.
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999954 544444443
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.4e-51 Score=446.58 Aligned_cols=345 Identities=18% Similarity=0.243 Sum_probs=270.1
Q ss_pred ChhHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEeCcHH
Q 009675 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (529)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lVi~P~~ 88 (529)
.++++++++|+. +||.+|||+|.++|+.++ .|+|+++.||||+|||+||++|++.. +.++|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 489999999987 799999999999999999 78999999999999999999999852 35899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCC
Q 009675 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~ 158 (529)
+|+.|+.+.++++ + +....+.++...... ...+.... .+++++||+.+.. .+.. ......
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~--~~IlV~Tp~~l~~-----~l~~~~~~~~~~ 175 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPGRLID-----VLEKYSNKFFRF 175 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHHHHHH-----HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcCC--CCEEEECHHHHHH-----HHHhcccccccc
Confidence 9999999999874 2 234444444443322 22222222 6788888775522 2221 234567
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-----CCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cC----C
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SF----N 228 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-----~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~----~ 228 (529)
+++|||||||++++|| |++.+..+.......+ ++++++||||+++.+...+...+.......+.. .. .
T Consensus 176 ~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp CCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred CCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 9999999999999999 9999988877665433 678999999999988775555444332222221 11 1
Q ss_pred CCccEEEEEecCchh----hHHHHHHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhC---CCceEEecCCCCHHHHHHH
Q 009675 229 RPNLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSV 300 (529)
Q Consensus 229 r~nl~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~ 300 (529)
...+...+....... ..+..+.+.+.. ..+.++||||+|++.|+.+++.|.+. |+.+..+||+|++++|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 223333333333222 233444444444 45678999999999999999999986 8999999999999999999
Q ss_pred HHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
++.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+||+||+|+.|.|++|+.+.|...++.+.+...
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877643
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-50 Score=420.92 Aligned_cols=347 Identities=20% Similarity=0.287 Sum_probs=275.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------------
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------- 77 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----------------- 77 (529)
..|+++++++.+.+.|.. +||.+|+|+|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 15 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp SSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 347778999999999987 69999999999999999999999999999999999999998753
Q ss_pred -------CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhh
Q 009675 78 -------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146 (529)
Q Consensus 78 -------~~~~lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~ 146 (529)
.+++||++|+++|+.|+.+.++++ ++....+.++........ .+. ...+++++||+.+..
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~I~v~Tp~~l~~--- 164 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE---RGCHLLVATPGRLVD--- 164 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT---TCCSEEEECHHHHHH---
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh---CCCCEEEEChHHHHH---
Confidence 257999999999999999999874 466666766665544322 222 236787777765421
Q ss_pred HHHHHh-hhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 147 MSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 147 ~~~l~~-~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~--~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
.+.. ......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+. .+..+
T Consensus 165 --~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~ 238 (417)
T 2i4i_A 165 --MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD--EYIFL 238 (417)
T ss_dssp --HHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS--SCEEE
T ss_pred --HHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC--CCEEE
Confidence 2221 2335668999999999999988 7877666543212222 577999999999887665555443 44333
Q ss_pred ec---cCCCCccEEEEEecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHH
Q 009675 224 KS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (529)
Q Consensus 224 ~~---~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (529)
.. ....+++...+..... ..+...+.++++.. .+.++||||++++.++.+++.|.+.|+.+..+||++++++|.+
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEC----CCSSEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EeCCCCCCccCceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 22 2334555555544332 45677788888775 4678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 300 ~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
+++.|++|+.+|||||+++++|||+|++++||++++|.|...|+||+||+||.|+.|.|++|+++.|...+..+.+...
T Consensus 318 ~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 318 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887777766543
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-50 Score=441.64 Aligned_cols=345 Identities=18% Similarity=0.241 Sum_probs=268.5
Q ss_pred ChhHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEeCcHH
Q 009675 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (529)
Q Consensus 21 ~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~lp~l~~----------~~~~lVi~P~~ 88 (529)
.+++.+.+.|.+ +|+.+|+|+|.++|+.++ .++|+++.||||+|||+||++|++.. +.++|||+|++
T Consensus 78 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 78 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SSCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 388899999987 799999999999999999 67899999999999999999999853 24899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCC
Q 009675 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~ 158 (529)
+|+.|+.+.++++ + .....+.++...... ...+... ..+++++||+.+.. .+.+ ......
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~ 226 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLID-----VLEKYSNKFFRF 226 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHH-----HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC--CCCEEEECcHHHHH-----HHHhcccccccc
Confidence 9999999999873 2 334444454443332 2222222 26788877775522 2221 224567
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhC-----CCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-----CC
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----FN 228 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-----~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~ 228 (529)
+++|||||||++++|| |++.+..+....... +++|+++||||+++.+...+...+.......+... ..
T Consensus 227 ~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 304 (563)
T ss_dssp CCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccc
Confidence 9999999999999999 999998877665442 36789999999999887755544443322222211 11
Q ss_pred CCccEEEEEecCchhh----HHHHHHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhC---CCceEEecCCCCHHHHHHH
Q 009675 229 RPNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSV 300 (529)
Q Consensus 229 r~nl~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~ 300 (529)
...+...+........ .+..+...+.. ..+.++||||+|++.|+.+++.|.+. |+.+..+||+|++++|..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred cccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 2233333333332222 23334444443 45678999999999999999999986 8999999999999999999
Q ss_pred HHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
++.|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+|||||.|++|.|++++.+.|...++.+.+...
T Consensus 385 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876644
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-49 Score=416.31 Aligned_cols=349 Identities=19% Similarity=0.320 Sum_probs=279.2
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeC
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~ 85 (529)
.....|.++++++.+.+.|.. +|+.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+.++||++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc
Confidence 344568889999999999987 7999999999999999999999999999999999999999985 367899999
Q ss_pred cHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCcc
Q 009675 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLN 160 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~ 160 (529)
|+++|+.|+.+.+++++ +......++........ .+..+ .+++++||+.+. ..+.. ......++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~ivv~Tp~~l~-----~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR---KLDYG---QHVVAGTPGRVF-----DMIRRRSLRTRAIK 181 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHH---HHHHC---CSEEEECHHHHH-----HHHHTTSSCCTTCC
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH---HhhcC---CCEEEcCHHHHH-----HHHHhCCccHhhee
Confidence 99999999999998854 55555555555443322 22222 467666665432 12221 23456689
Q ss_pred EEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEec---cCCCCccEEEE
Q 009675 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEV 236 (529)
Q Consensus 161 ~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v 236 (529)
+|||||||++.+++ |+..+ ..+...+ ++.+++++|||+++.+...+.. .+..+..+.. ....+++...+
T Consensus 182 ~vViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 254 (410)
T 2j0s_A 182 MLVLDEADEMLNKG--FKEQI---YDVYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFF 254 (410)
T ss_dssp EEEEETHHHHTSTT--THHHH---HHHHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEccHHHHHhhh--hHHHH---HHHHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEE
Confidence 99999999999987 55444 3444445 4688999999999876543322 2334444332 23344555444
Q ss_pred EecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
........+...+.++++.....++||||++++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||||+
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred EEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 44444445777888888877777999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 317 a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
++++|||+|++++||++++|.+...|+||+||+||.|++|.|++|+...|...++.+.+....
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999988888776544
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.3e-49 Score=410.09 Aligned_cols=346 Identities=19% Similarity=0.262 Sum_probs=279.0
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (529)
...|+++++++++.+.|.+ +||.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+.++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 3468889999999999998 7999999999999999999999999999999999999999885 35689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
++|+.|+.+.++++ ++......++........ . .....+++++||+.+.. .+. .......+++|
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~---~~~~~~Ivv~T~~~l~~-----~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R---LNETVHILVGTPGRVLD-----LASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H---TTSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H---hcCCCCEEEEchHHHHH-----HHHhCCcccccCCEE
Confidence 99999999999885 556666666555433211 1 12346788888775421 222 12345678999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe--ccCCCCccEEEEEec
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK 239 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~ 239 (529)
||||||++.+.+ |+.. +..+...++ ..+++++|||+++.+...+...+.. +..+. .....+++...+...
T Consensus 168 IiDEaH~~~~~~--~~~~---~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKTI---IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHK--PYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHHH---HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSS--CEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHHH---HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCC--CeEEEeccccccCCceeEEEEe
Confidence 999999987643 4433 444445554 6789999999999887777666543 33322 233344444433332
Q ss_pred CchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 009675 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (529)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (529)
. ...+...+..+++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 245677778888887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 320 ~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
+|+|+|++++||++++|.+...|+||+||+||.|++|.|++++++.|...++.+.+..+.
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999888876554
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-48 Score=405.69 Aligned_cols=344 Identities=15% Similarity=0.231 Sum_probs=274.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|+++++++.+.+.|++ +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++.. +.++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 457888999999999998 79999999999999999999999999999999999999998853 55899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
+|+.|+.+.++++ ++.+..+.++......... +..+. .+++++||+.+.. .+. .......+++|
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~--~~iiv~T~~~l~~-----~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGRILA-----LARNKSLNLKHIKHF 156 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSC--CSEEEECHHHHHH-----HHHTTSSCCTTCSEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCC--CCEEEECHHHHHH-----HHHcCCccccccCEE
Confidence 9999999999886 6777777777665544332 22222 5787777775422 111 12335678999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEecc----CCCCccEEEEE
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVR 237 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~r~nl~~~v~ 237 (529)
||||||++.+| ++|+..+.. +....+ ..+++++|||+++.....+...+. .+..+... ....++...+.
T Consensus 157 ViDEaH~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 230 (391)
T 1xti_A 157 ILDECDKMLEQ-LDMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYYV 230 (391)
T ss_dssp EECSHHHHTSS-HHHHHHHHH---HHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEEE
T ss_pred EEeCHHHHhhc-cchHHHHHH---HHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEEE
Confidence 99999999886 235554443 444444 788999999999987776665553 34333221 12233333333
Q ss_pred ecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 009675 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (529)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (529)
.. ....+...+.++++...+.++||||++++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||||++
T Consensus 231 ~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 231 KL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp EC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred Ec-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 22 23456778888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH-HHHHHHHHh
Q 009675 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILSK 376 (529)
Q Consensus 318 ~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~-~~~~~i~~~ 376 (529)
+++|+|+|++++||+++.|.|...|+||+||+||.|++|.|++++++.+. ..++.+.+.
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 369 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987744 445555444
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-49 Score=411.69 Aligned_cols=348 Identities=19% Similarity=0.279 Sum_probs=264.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (529)
...|..+++++.+.+.|++ +|+.+|+++|.++++.+++|+++++.+|||+|||++|++|++. .+.++||++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3556778999999999998 7999999999999999999999999999999999999999875 36789999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
++|+.|+.+.++++ +.......++...... ...+..+ ..+++++||+.+.. .+. .......+++|
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~iiv~T~~~l~~-----~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME--APHIIVGTPGRVFD-----MLNRRYLSPKYIKMF 187 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT--CCSEEEECHHHHHH-----HHHHTSSCSTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC--CCCEEEECHHHHHH-----HHHcCCcccccCcEE
Confidence 99999999999885 3444444444443322 2223322 36787777765422 222 22345668999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEec---cCCCCccEEEEEe
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~~ 238 (529)
||||||++.+|+ |... +..+...+ ++.++++||||+++.+...+...+ ..+..+.. .....++...+..
T Consensus 188 ViDEah~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 188 VLDEADEMLSRG--FKDQ---IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM--RDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp EECSHHHHHHTT--THHH---HHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTC--SSCEEECCCCCCCCTTSCCEEEEE
T ss_pred EEECHHHhhccC--cHHH---HHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHc--CCCEEEEecCCccCCCCceEEEEE
Confidence 999999999887 5543 34444444 578999999999988766444433 34443322 2233344444444
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
......+...+.++++....+++||||++++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||||+++
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 44445678888888988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
++|||+|++++||+++.|.+...|+||+||+||.|++|.|++++++.|...++.+.+....
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTC
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999888887765543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-48 Score=405.15 Aligned_cols=346 Identities=19% Similarity=0.245 Sum_probs=272.1
Q ss_pred ccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEE
Q 009675 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (529)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~~~~l 82 (529)
......|+++++++.+.+.|++ +|+.+|+|+|.++++.++++ +++++.||||+|||++|++|++.. ++++|
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3445678889999999999998 79999999999999999997 999999999999999999998742 45899
Q ss_pred EeCcHHHHHHHHHHHHHHcC-----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hh
Q 009675 83 VVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IH 154 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~ 154 (529)
|++|+++|+.|+.+.+++++ .......++..... ......+++++||+.+ ..+. . ..
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l------~~~~~~~~~~ 164 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFI 164 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTSCSS
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHH------HHHHHhcCCc
Confidence 99999999999999988853 33333333221110 0112356777766644 2222 1 22
Q ss_pred ccCCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEec---cCCC
Q 009675 155 SRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNR 229 (529)
Q Consensus 155 ~~~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r 229 (529)
....+++|||||||++.+ ++ |...+.. +...+ ++.+++++|||+++.+.......+ ..+..+.. ....
T Consensus 165 ~~~~~~~iViDEah~~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 237 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQG--HQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETL 237 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTT--THHHHHH---HHHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSC
T ss_pred ChhhCcEEEEeCHHHHhhcCC--cHHHHHH---HHhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeeccccccc
Confidence 335689999999999987 44 5544433 33444 368999999999998877555544 34444332 2334
Q ss_pred CccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 230 ~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
+++...+........+...+.+++....+.++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 317 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 45555555555556778888888888778899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEEeccc-HHHHHHHHHhccc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQS 379 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d-~~~~~~i~~~~~~ 379 (529)
+|||||+++++|||+|++++||++++| .+...|+||+||+||.|+.|.|+++++..+ ...++.+.+....
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 999999999999999999999999999 578999999999999999999999998765 6666666655543
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.3e-48 Score=400.15 Aligned_cols=342 Identities=18% Similarity=0.258 Sum_probs=268.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCc
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (529)
..|+++++++.+.+.|.+ +|+.+|+|+|.++++.++.+ +++++.||||+|||++|++|++.. ++++||++|
T Consensus 5 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 578889999999999998 79999999999999999998 999999999999999999998753 668999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccE
Q 009675 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (529)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (529)
+++|+.|+.+.+++++ +......+..... ......+++++||+.+.. .+. .......+++
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLD-----LMRRKLMQLQKIKI 148 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHH-----HHHTTCBCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHH-----HHHcCCcccccCCE
Confidence 9999999999999854 3333333221110 111235677777765421 221 2234567899
Q ss_pred EEEeccccccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe-ccCCCCccEEEEEe
Q 009675 162 VAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRY 238 (529)
Q Consensus 162 iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~~ 238 (529)
|||||||++.+ ++ |+..+.. +...++ +.+++++|||+++.+.......+......... .....+++...+..
T Consensus 149 iIiDEah~~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 149 FVLDEADNMLDQQG--LGDQCIR---VKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp EEEETHHHHHHSTT--HHHHHHH---HHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE
T ss_pred EEEEChhhhcCccc--cHHHHHH---HHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEE
Confidence 99999999987 44 5544443 444443 68899999999988777555544322211111 23344555555555
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
......+...+..++....++++||||++++.++.+++.|++.|+.+..+||++++++|.++++.|++|+.+|||||+++
T Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp CSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred cCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 54556677778888887778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCC------CHHHHHHHHcccCCCCCCceEEEEEecccHH-HHHHHHHhc
Q 009675 319 GMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILSKN 377 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~------s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~-~~~~i~~~~ 377 (529)
++|||+|++++||++++|. |...|+||+||+||.|+.|.|++++...+.. .++.+.+..
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999999999876544 444444433
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-47 Score=392.72 Aligned_cols=342 Identities=18% Similarity=0.288 Sum_probs=273.4
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~ 88 (529)
..|.++++++.+.+.|++ +|+.+|+|+|.++++.++++ +++++.+|||+|||++|++|++.. +.++||++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 357778999999999998 69999999999999999988 699999999999999999988753 67899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEE
Q 009675 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVA 163 (529)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iV 163 (529)
+|+.|+.+.++++ ++......++......... +. ..+++++||+.+. ..+.. ......++++|
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~----~~~iiv~T~~~l~-----~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK----NANIVVGTPGRIL-----DHINRGTLNLKNVKYFI 152 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH----TCSEEEECHHHHH-----HHHHTTCSCTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC----CCCEEEecHHHHH-----HHHHcCCcccccCCEEE
Confidence 9999999999884 4555556555554433222 11 2678777777542 12221 23356789999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCch
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~ 242 (529)
+||||++.+|+ |...+ ..+...+ ++.+++++|||+++.....+...++ .+..+... ...++...+... ..
T Consensus 153 iDEah~~~~~~--~~~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~ 223 (367)
T 1hv8_A 153 LDEADEMLNMG--FIKDV---EKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAK-INANIEQSYVEV-NE 223 (367)
T ss_dssp EETHHHHHTTT--THHHH---HHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECC-SSSSSEEEEEEC-CG
T ss_pred EeCchHhhhhc--hHHHH---HHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEec-CCCCceEEEEEe-Ch
Confidence 99999999887 55444 3444444 4788999999999987776666553 22333222 223343333322 22
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q 009675 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (529)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GI 322 (529)
.++...+.++++ ..+.++||||++++.++.+++.|++.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|+
T Consensus 224 ~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 224 NERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp GGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 466777877776 4566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
|+|++++||+++.|.|...|+||+||+||.|++|.|++++++.|...++.+.+....
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998888776544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-47 Score=389.50 Aligned_cols=326 Identities=17% Similarity=0.233 Sum_probs=259.3
Q ss_pred hhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 22 l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
+++.+.+.|++ +|+.+|+|+|+++++.+++|+++++.+|||+|||++|++|++..+.++||++|+++|+.|+.+.++++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 45788999987 89999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecccccccCCCC
Q 009675 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHD 176 (529)
Q Consensus 102 ----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~~g~~ 176 (529)
++....+.++......... +. ..+++++||+.+.. .+. .......++++|+||||++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iViDEah~~~~~~-- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQINR---VR----NADIVVATPGRLLD-----LWSKGVIDLSSFEIVIIDEADLMFEMG-- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHHH---HT----TCSEEEECHHHHHH-----HHHTTSCCGGGCSEEEEESHHHHHHTT--
T ss_pred hhhcCCcEEEEECCcchHHHHhh---cC----CCCEEEECHHHHHH-----HHHcCCcchhhCcEEEEEChHHhhccc--
Confidence 3566666666655433221 11 26787777775422 111 12234568999999999999988
Q ss_pred CHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHh
Q 009675 177 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255 (529)
Q Consensus 177 fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~ 255 (529)
|... +..+....+ ..+++++|||+++...+.+...+. .+..+......+++...+...... .....+.++.
T Consensus 146 ~~~~---~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 217 (337)
T 2z0m_A 146 FIDD---IKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKDD---WRSKVQALRE 217 (337)
T ss_dssp CHHH---HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHHT
T ss_pred cHHH---HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeChH---HHHHHHHHHh
Confidence 5443 444555555 556778999999988776666553 344444444455555544433221 2233356667
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~ 335 (529)
..+.++||||++++.++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 778899999999999999999886 5889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHH
Q 009675 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (529)
Q Consensus 336 p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~ 375 (529)
|.|+..|+||+||+||.|++|.|++|+. .|...++.+.+
T Consensus 294 ~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 294 PQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp CSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 9999999999999999999999999999 77776666543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.3e-49 Score=408.02 Aligned_cols=344 Identities=19% Similarity=0.261 Sum_probs=146.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (529)
...|+++++++.+.+.|.. +|+.+|+|+|+++++.+++|+++++.+|||+|||++|++|++. .++++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 3458888999999999998 7999999999999999999999999999999999999999885 36689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
++|+.|+.+.+.++ ++....+.++........... ..+++++||+.+.. .+. .......++++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFD-----NIQRRRFRTDKIKMF 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHH-----HHHhCCcchhhCcEE
Confidence 99999999998874 466666776666544333222 26787777775422 221 12334568999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc---CCCCccEEEEEe
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRY 238 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~ 238 (529)
|+||||++.+++ |+..+..+ ...+ ++.+++++|||+++.+...+...+. .+..+... ...+++...+..
T Consensus 167 IiDEah~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 167 ILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp EEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC--------------
T ss_pred EEEChHHhhCCC--cHHHHHHH---HHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCceEEEEE
Confidence 999999999887 66555444 3344 4688999999999987765555543 34333221 122233222222
Q ss_pred cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 009675 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (529)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (529)
......+...+.++++.....++||||++++.++.+++.|++.|+.+..+||++++++|..+++.|++|+.+|||||+++
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 22222345556666666667789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++++.|...++.+.+..
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 378 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988777665543
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.9e-47 Score=397.05 Aligned_cols=330 Identities=16% Similarity=0.209 Sum_probs=256.9
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
.+++.+.+++.||+ +|+|+|.++++.+++|+|+++.||||+|||++|++|++. .++++||++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 45678889998999 699999999999999999999999999999999999876 68899999999999999999999
Q ss_pred H---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCC--
Q 009675 100 E---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (529)
Q Consensus 100 ~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g-- 174 (529)
+ .++.+..+.++.....+......+..+. .+++++||+.+. .+........+++|||||||++.+||
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~------~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVS------KNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHH------HCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHH------HHHHHhccccccEEEEeChHhhhhccch
Confidence 9 4778888999888877666666676654 677777776542 22223555679999999999999887
Q ss_pred -------CCCHHH-HHHHHHHHH------hC---CCCCEEEEeecC-ChhHHHHHHHH-hccCCCeEEeccCCCCccEEE
Q 009675 175 -------HDFRPS-YRKLSSLRN------YL---PDVPILALTATA-APKVQKDVMES-LCLQNPLVLKSSFNRPNLFYE 235 (529)
Q Consensus 175 -------~~fr~~-y~~l~~l~~------~~---~~~~ii~lSAT~-~~~~~~~i~~~-l~~~~~~~~~~~~~r~nl~~~ 235 (529)
++|++. +..+..... .+ ++.+++++|||+ +..+...+... +.... .......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc---Cccccccccchhe
Confidence 678887 444433332 11 578999999994 44443333332 22111 1112233445444
Q ss_pred EEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
+...+ +...+.++++.. +.++||||++++.++.+++.|++.|+.+. .+||. +|. ++.|++|+++||||
T Consensus 235 ~~~~~----~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISSR----SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESSC----CHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eeccC----HHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 44332 344556666663 36899999999999999999999999998 99995 444 99999999999999
Q ss_pred ----eCccccccccCC-ccEEEEeCCC--CCHHHHHHHHcccCCCC----CCceEEEEEecccHHHHHHHHHhc
Q 009675 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 315 ----T~a~~~GIDip~-v~~VI~~~~p--~s~~~y~Q~~GRagR~G----~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
|+++++|||+|+ |++||+|++| .+...|+||+||+||.| +.|.+++++ .|...++.+.+..
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 999999999999 9999999999 99999999999999988 478999988 5555555554443
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.8e-48 Score=411.05 Aligned_cols=341 Identities=20% Similarity=0.260 Sum_probs=135.3
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEEe
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi 84 (529)
....|..+++++.+.+.|.. +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+++||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34567788999999999998 79999999999999999987 999999999999999999999864 3389999
Q ss_pred CcHHHHHHHHHHHHHHcC-----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hhcc
Q 009675 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHSR 156 (529)
Q Consensus 85 ~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~~~ 156 (529)
+|+++|+.|+.+.+++++ +.......+..... ......+++++||+.+ ..+. + ....
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l------~~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTV------LDWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHH------HHHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHH------HHHHHhcCCcCc
Confidence 999999999988887742 23333332221110 0111246666666543 2322 2 2334
Q ss_pred CCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC---CCCc
Q 009675 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPN 231 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~n 231 (529)
..+++|||||||++.+ ++ |...+. .+.+.++ +.+++++|||+++.+.......+ ..+..+.... ...+
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHHH---HHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHHH---HHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 6789999999999986 44 443333 3444444 68999999999998776554443 3444333221 1222
Q ss_pred cEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
+...+........+...+..++......++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222222455666777777666778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEEeccc-HHHHHHHHHh
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d-~~~~~~i~~~ 376 (529)
||||+++++|||+|++++||+||+| .+.+.|+||+|||||.|++|.|+++++..+ ...++.+.+.
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~ 458 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEH 458 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHH
Confidence 9999999999999999999999999 577999999999999999999999998765 5555544433
No 18
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.9e-45 Score=416.35 Aligned_cols=385 Identities=17% Similarity=0.229 Sum_probs=265.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.++...+...|+|+ |+|+|.++|+.+++|+++++.||||+|||++|++|+.. .++++||++|+++|+.|+++.+++
T Consensus 26 ~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 26 DELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp HHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44444556678886 99999999999999999999999999999998887763 478899999999999999999998
Q ss_pred c--CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecccccccCCCCC
Q 009675 101 K--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDF 177 (529)
Q Consensus 101 ~--gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~~g~~f 177 (529)
. ++.+..+++.... .+..+++|+||+.+.. .+. .......+++|||||||++.+|++.
T Consensus 105 ~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~-----~l~~~~~~l~~l~lvViDEaH~l~d~~~g- 165 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQI-------------NPDANCLIMTTEILRS-----MLYRGADLIRDVEFVIFDEVHYVNDQDRG- 165 (997)
T ss_dssp TC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHHH-----HHHHTCSGGGGEEEEEECCTTCCCTTCTT-
T ss_pred HcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHHH-----HHHhCchhhcCCCEEEEECcccccccchH-
Confidence 5 5677777765531 2347888888886622 221 2223456899999999999999854
Q ss_pred HHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhcc---CCCeEEeccCCCCccEEEEEecC-------------
Q 009675 178 RPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYKD------------- 240 (529)
Q Consensus 178 r~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~r~nl~~~v~~~~------------- 240 (529)
..+.. +...+| ++++++||||+++.. ++..+++. ....++.......++.+.+....
T Consensus 166 -~~~e~---ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~ 239 (997)
T 4a4z_A 166 -VVWEE---VIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 239 (997)
T ss_dssp -CCHHH---HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBC
T ss_pred -HHHHH---HHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhh
Confidence 33333 333444 789999999987653 45666553 22222322222222222211100
Q ss_pred -------------------------------------------------------------------------------c
Q 009675 241 -------------------------------------------------------------------------------L 241 (529)
Q Consensus 241 -------------------------------------------------------------------------------~ 241 (529)
.
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (997)
T 4a4z_A 240 EANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGP 319 (997)
T ss_dssp HHHHHHHHHHHC-----------------------------------------------------------------CCC
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCC--------------------------------------
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-------------------------------------- 283 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-------------------------------------- 283 (529)
....+..+.+.+...+..++||||+|++.|+.++..|.+.|+
T Consensus 320 ~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 320 SKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp CTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 123456777888887778999999999999999999987665
Q ss_pred -ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCC---------CHHHHHHHHcccCCCC
Q 009675 284 -SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQ 353 (529)
Q Consensus 284 -~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~---------s~~~y~Q~~GRagR~G 353 (529)
.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||++++|+ |..+|+||+|||||.|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G 478 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCC
Confidence 5799999999999999999999999999999999999999999 7778777776 9999999999999999
Q ss_pred --CCceEEEEE--ecccHHHHHHHHHhcccCCCCccchHHhhh----HHHHHHHHHhhhc---------ccchHHHHhcc
Q 009675 354 --LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSFSTRERSS----KKSISDFSQVLDV---------AGKRFSRVLGN 416 (529)
Q Consensus 354 --~~g~~i~~~--~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---------~~Crr~~il~~ 416 (529)
..|.|++++ ...+...++.++.................. +......+.|+++ ..|++...+.
T Consensus 479 ~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~- 557 (997)
T 4a4z_A 479 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK- 557 (997)
T ss_dssp TCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH-
T ss_pred CCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH-
Confidence 567777777 344666677776544332221110000000 0001122333333 5688888888
Q ss_pred cCCCCCCCCCccchhhhhhcccccccCCcCCCCccccCCCCCCCC
Q 009675 417 RYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHP 461 (529)
Q Consensus 417 ~y~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~c~~~Cd~c~~~ 461 (529)
+| ++......|. .||+|..+
T Consensus 558 ----------------------~l--~~~~~~~~~~-~c~~c~~~ 577 (997)
T 4a4z_A 558 ----------------------VL--QEELQTIEYK-SCEICDND 577 (997)
T ss_dssp ----------------------HH--HHHHHC-------------
T ss_pred ----------------------HH--HHHHHHhhhh-cccccccc
Confidence 77 7775555576 69999643
No 19
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=416.50 Aligned_cols=320 Identities=18% Similarity=0.248 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----C----CeEEEeCcHHHHHHHH-HHHHHHcC---Cc
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~-----~----~~~lVi~P~~~L~~q~-~~~l~~~g---i~ 104 (529)
+|||+|.++++.+++|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|| ++.+++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999999752 2 8899999999999999 99999865 67
Q ss_pred eeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHH--HHhhhccCCccEEEEecccccccCCCCCHHHHH
Q 009675 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~--l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~ 182 (529)
+..++++.......... . ...+++++||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~---~---~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEV---V---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHH---H---HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhh---h---cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 77776655432211111 1 137888888886642111000 11223445689999999999843 333443333
Q ss_pred HHHH--HHHhC---------CCCCEEEEeecCChh-------HHHHHHHHhccCCC-eE---------EeccCCCCccEE
Q 009675 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVMESLCLQNP-LV---------LKSSFNRPNLFY 234 (529)
Q Consensus 183 ~l~~--l~~~~---------~~~~ii~lSAT~~~~-------~~~~i~~~l~~~~~-~~---------~~~~~~r~nl~~ 234 (529)
.+.. +.... |..++++||||+... ....+...+....+ .+ +.....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2211 11111 677899999999973 33444433222222 11 111123344333
Q ss_pred EEEecCc-------------------------------------------------------------------------
Q 009675 235 EVRYKDL------------------------------------------------------------------------- 241 (529)
Q Consensus 235 ~v~~~~~------------------------------------------------------------------------- 241 (529)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221100
Q ss_pred -----------------------------------------------------------hhhHHHHHHHHH----HhcC-
Q 009675 242 -----------------------------------------------------------LDDAYADLCSVL----KANG- 257 (529)
Q Consensus 242 -----------------------------------------------------------~~~~~~~l~~~l----~~~~- 257 (529)
...++..|.+++ ...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 000011112222 2223
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC------CCceEEecCC--------CCHHHHHHHHHHHhcCCCeEEEEeCccccccc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GID 323 (529)
+.++||||++++.++.+++.|.+. |+.+..+||+ |++++|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 678999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
+|+|++|||||+|.|++.|+||+|||||.| +.+++++...+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999999988876 55555555443
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-46 Score=400.25 Aligned_cols=343 Identities=18% Similarity=0.237 Sum_probs=220.9
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
+.+.++.+.+.+.+.. .|+.+|+++|.+++++++++ +++++.||||+|||++|++|++.. ++++||++|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3455677888888887 59999999999999999998 999999999999999999988753 45899999999
Q ss_pred HHHHHHHHHHHHcCCceeEe-ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEec
Q 009675 89 ALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDE 166 (529)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDE 166 (529)
+|+.|+.+.+++++...... ......... .......+++++||+.+.. .+. .......+++|||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~T~~~l~~-----~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVP-------KGAKIDAQIVIGTPGTVMD-----LMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHHHH-----HHHTTCSCCTTCCEEEECC
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccc-------ccccCCCCEEEECHHHHHH-----HHHcCCccccCCCEEEEec
Confidence 99999999999864322111 111111100 0011246787777775422 221 223456799999999
Q ss_pred cccccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEec---cCCCCccEEEEEecCc
Q 009675 167 AHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDL 241 (529)
Q Consensus 167 aH~~~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~~~~~ 241 (529)
||++++ ++ |...+.. +...++ +.+++++|||+++.+.......+. .+..+.. ....+++...+.....
T Consensus 268 aH~~~~~~~--~~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 268 ADNMLDQQG--LGDQSMR---IKHLLPRNTQIVLFSATFSERVEKYAERFAP--NANEIRLKTEELSVEGIKQLYMDCQS 340 (508)
T ss_dssp HHHHTTC----CHHHHHH---HHHHSCTTCEEEEEESCCSTHHHHHHHHHST--TCEEECCCCCC----CCCCEEEEC--
T ss_pred hhhhcccCC--cHHHHHH---HHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC--CCeEEEeccccCCcccceEEEEECCc
Confidence 999987 44 5554444 444444 788999999999877664444432 3332221 1222333333333333
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccc
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (529)
...+...+.++++...++++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||+++++|
T Consensus 341 ~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 341 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 35667778888877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEEec-ccHHHHHHHHHhccc
Q 009675 322 IDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSKNQS 379 (529)
Q Consensus 322 IDip~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~g~~i~~~~~-~d~~~~~~i~~~~~~ 379 (529)
||+|++++||+++.| .|+..|+||+||+||.|++|.|++++.. .+...++.+.+....
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 999999999999999 8899999999999999999999999985 455555555554443
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.2e-45 Score=407.04 Aligned_cols=329 Identities=20% Similarity=0.266 Sum_probs=204.1
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHH
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
..|.. +|+.+|||+|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34554 79999999999999999999999999999999999999998742 2789999999999999999999
Q ss_pred Hc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-h-ccCCccEEEEecccccccC
Q 009675 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 100 ~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~-~~~~l~~iViDEaH~~~~~ 173 (529)
++ ++.+..+.++......... +.. ..+++++||+.+.. .+... . ....+++|||||||++..+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~L~~-----~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQILVN-----NLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHHHHHH-----HHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHHHHHH-----HHhcCcccccccccEEEEeCCCcccCc
Confidence 86 6777777766543221111 111 26788888876422 22221 1 3556899999999999865
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCEEEEeecCC-------hhHHHHHHHHhccCCCeEEeccC----------CCCc
Q 009675 174 GHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------NRPN 231 (529)
Q Consensus 174 g~~fr~~y~~l~~l~~~-----~~~~~ii~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~~----------~r~n 231 (529)
. .++..... .+... .+..++++||||+. ......+...+.......+.... ..|.
T Consensus 152 ~-~~~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 152 H-PYNMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp C-HHHHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred c-cHHHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 3 23322211 12222 25678999999998 45555555544221111111000 0000
Q ss_pred cEEEE---------------------------------------------------------------------------
Q 009675 232 LFYEV--------------------------------------------------------------------------- 236 (529)
Q Consensus 232 l~~~v--------------------------------------------------------------------------- 236 (529)
..+..
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 00000
Q ss_pred -------------------------------------------------E---------------ecCchhhHHHHHHHH
Q 009675 237 -------------------------------------------------R---------------YKDLLDDAYADLCSV 252 (529)
Q Consensus 237 -------------------------------------------------~---------------~~~~~~~~~~~l~~~ 252 (529)
. .......++..|.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 0 000012355566666
Q ss_pred HHhc----CCceEEEEeCCcccHHHHHHHHHhCC----CceEEe--------cCCCCHHHHHHHHHHHhc-CCCeEEEEe
Q 009675 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (529)
Q Consensus 253 l~~~----~~~~~IIf~~s~~~~e~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~VLVaT 315 (529)
++.. ++.++||||++++.++.+++.|+..| +.+..+ ||+|++++|.+++++|++ |+++|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 6654 56789999999999999999999988 888888 559999999999999998 999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHH
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i 373 (529)
+++++|||+|+|++|||||+|.|++.|+||+|| ||. ++|.|+++++.++......+
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999 998 78999999998877554433
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.5e-42 Score=370.50 Aligned_cols=320 Identities=19% Similarity=0.259 Sum_probs=183.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----C
Q 009675 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~~----g 102 (529)
+.-+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3347999999999999999999999999999999999998754 788999999999999999999985 7
Q ss_pred CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEecccccccCCCCCHHH
Q 009675 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPS 180 (529)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~~~~~g~~fr~~ 180 (529)
+.+..+.++.......... .. ..+++++||+.+. ..+.. .. ....+++|||||||++..|+. +...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~-----~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~ 151 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILV-----NSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVL 151 (556)
T ss_dssp CCEEECCCC-----CHHHH---HH---HCSEEEECHHHHH-----HHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHH
T ss_pred ceEEEEeCCCCcchhHHHh---hC---CCCEEEECHHHHH-----HHHHhCcccccccCCEEEEECCcccCCcch-HHHH
Confidence 8888877766444322111 11 2567777776532 12222 12 456689999999999998873 3222
Q ss_pred HHHHHHHHHh----CCCCCEEEEeecCChhH----------HHHHHHHhccCCCeE-------EeccCCCCccEEEEEec
Q 009675 181 YRKLSSLRNY----LPDVPILALTATAAPKV----------QKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK 239 (529)
Q Consensus 181 y~~l~~l~~~----~~~~~ii~lSAT~~~~~----------~~~i~~~l~~~~~~~-------~~~~~~r~nl~~~v~~~ 239 (529)
... .+... .+..++++||||+.... ...+...++...... +.....++.........
T Consensus 152 ~~~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 152 MTR--YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHH--HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHH--HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 111 12221 35688999999996421 112223332110000 00011222222211110
Q ss_pred ---C----------------------------------------------------------------------------
Q 009675 240 ---D---------------------------------------------------------------------------- 240 (529)
Q Consensus 240 ---~---------------------------------------------------------------------------- 240 (529)
+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 309 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------------chhhHHHHHHHHHHh----cC
Q 009675 241 -----------------------------------------------------------LLDDAYADLCSVLKA----NG 257 (529)
Q Consensus 241 -----------------------------------------------------------~~~~~~~~l~~~l~~----~~ 257 (529)
....++..|.+++.. .+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~ 389 (556)
T 4a2p_A 310 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389 (556)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC
Confidence 001234445555543 46
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCeEEEEeCcccccccc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGIDR 324 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GIDi 324 (529)
+.++||||+++..++.+++.|.+. |.....+||+|++++|.+++++|++ |+++|||||+++++|||+
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 469 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc
Confidence 789999999999999999999876 5666777889999999999999999 999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHH
Q 009675 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (529)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~ 370 (529)
|+|++|||||+|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 470 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 470 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ---CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999999999999 999 78999999998876443
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-42 Score=395.74 Aligned_cols=336 Identities=18% Similarity=0.160 Sum_probs=244.1
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHH
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALME 92 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~ 92 (529)
.+..+++.+.+...+...|++ .|+|+|.++|+++++|++++++||||+|||++|++|++.. ++++||++|+++|+.
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN 241 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 344456666665566665565 4999999999999999999999999999999999998754 889999999999999
Q ss_pred HHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecccccc
Q 009675 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 93 q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEaH~~~ 171 (529)
|+++.+++....+..+.+... ..+..+++++||+.+.. .+.. ......+++|||||||++.
T Consensus 242 Q~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~-----~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 242 QKYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp HHHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHH-----HHHHCSSHHHHEEEEEEETGGGTT
T ss_pred HHHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHH-----HHHcCccccccCCEEEEhhhhhcc
Confidence 999999996667777666543 12347788887775432 2211 1123458999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhcc--CCCe-EEeccCCCCccEEEEEe---------
Q 009675 172 SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCL--QNPL-VLKSSFNRPNLFYEVRY--------- 238 (529)
Q Consensus 172 ~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~--~~~~-~~~~~~~r~nl~~~v~~--------- 238 (529)
+|+ |...+..+ ...+| ++++++||||+++.. ++..+++. ..+. ++........+...+..
T Consensus 304 d~~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~ 376 (1108)
T 3l9o_A 304 DKE--RGVVWEET---IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLV 376 (1108)
T ss_dssp SHH--HHHHHHHH---HHHSCTTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEE
T ss_pred ccc--hHHHHHHH---HHhcCCCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeee
Confidence 887 45444443 34444 789999999987652 22333221 2222 22222222222111110
Q ss_pred ---cCc------------------------------------------hhhHHHHHHHHHHhcCCceEEEEeCCcccHHH
Q 009675 239 ---KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273 (529)
Q Consensus 239 ---~~~------------------------------------------~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~ 273 (529)
... ....+..++..+...+..++||||++++.|+.
T Consensus 377 vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 377 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp EETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred eccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHH
Confidence 000 02334445566666677799999999999999
Q ss_pred HHHHHHhCCCc---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 274 LSAYLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 274 l~~~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
++..|...|+. +..+||+|++.+|..+++.|.+|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99998653322 789999999999999999999999999999
Q ss_pred eCccccccccCCccEEEEeCC--------CCCHHHHHHHHcccCCCC--CCceEEEEEecc-cHHHHHHHHHhc
Q 009675 315 TVAFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (529)
Q Consensus 315 T~a~~~GIDip~v~~VI~~~~--------p~s~~~y~Q~~GRagR~G--~~g~~i~~~~~~-d~~~~~~i~~~~ 377 (529)
|+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|++++.+. +...+..++...
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 999999999999999997665 348889999999999999 688999998876 555566666544
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.6e-41 Score=391.77 Aligned_cols=331 Identities=17% Similarity=0.198 Sum_probs=248.3
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
+++.+.++..+|+ +|+|+|.++++.+++|+|++++||||+|||++|++|++. .++++||++|+++|+.|+++.+++
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 3455667777899 599999999999999999999999999999998888765 588999999999999999999999
Q ss_pred ---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCC---
Q 009675 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (529)
Q Consensus 101 ---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g--- 174 (529)
.++.+..++++.....+......+..+. .+++++||+.+ ..+......+.+++|||||||++..++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL------~~~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFV------SKNREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHH------HHSHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHH------HHHHHhhcccCcCEEEEeCCCccccccccc
Confidence 4668888888887766556666666654 66766666544 333333556689999999999988733
Q ss_pred ------CCCHHH-HHHHHHHHH------hC---CCCCEEEEeecCCh-hHHHHHHH-HhccCCCeEEeccCCCCccEEEE
Q 009675 175 ------HDFRPS-YRKLSSLRN------YL---PDVPILALTATAAP-KVQKDVME-SLCLQNPLVLKSSFNRPNLFYEV 236 (529)
Q Consensus 175 ------~~fr~~-y~~l~~l~~------~~---~~~~ii~lSAT~~~-~~~~~i~~-~l~~~~~~~~~~~~~r~nl~~~v 236 (529)
.+|.+. +..+..... .+ ++.+++++|||+.+ .+...+.. .+.. .+.......+++...+
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEE
Confidence 236665 444433322 01 46899999999544 43322332 2221 1122233455665555
Q ss_pred EecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceE-EecCCCCHHHHHHHHHHHhcCCCeEEEE-
Q 009675 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (529)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa- 314 (529)
...+ +...|.++++..+ .++||||++++.++.+++.|+..|+.+. .+||. |.+ +++|++|+++||||
T Consensus 293 ~~~~----k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 293 ISSR----SKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp ESCC----CHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEE
T ss_pred EecC----HHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEe
Confidence 4442 3445566666643 6899999999999999999999999998 99992 555 99999999999999
Q ss_pred ---eCccccccccCC-ccEEEEeCCCC-----------------------------------------------------
Q 009675 315 ---TVAFGMGIDRKD-VRLVCHFNIPK----------------------------------------------------- 337 (529)
Q Consensus 315 ---T~a~~~GIDip~-v~~VI~~~~p~----------------------------------------------------- 337 (529)
|+++++|||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i 441 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKV 441 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999 99999999998
Q ss_pred -------------------CHHHHHHHHcccCCCCCCc--eEEEEEecccHHHHHHHHHhc
Q 009675 338 -------------------SMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 338 -------------------s~~~y~Q~~GRagR~G~~g--~~i~~~~~~d~~~~~~i~~~~ 377 (529)
+..+|+||+||+||.|..| .++.+...+|...++.+.+..
T Consensus 442 ~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~ 502 (1104)
T 4ddu_A 442 KEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRL 502 (1104)
T ss_dssp HHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHH
T ss_pred hhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHH
Confidence 8889999999999976443 344444447777776666554
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.4e-42 Score=381.64 Aligned_cols=328 Identities=22% Similarity=0.243 Sum_probs=245.4
Q ss_pred CCCCC--hhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHH
Q 009675 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (529)
Q Consensus 17 ~~~~~--l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~ 91 (529)
|++++ +++.+.+.+++ +||.+|+|+|.++++.++++++++++||||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 44556 88899999987 8999999999999999999999999999999999999998873 478999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEecc
Q 009675 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (529)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViDEa 167 (529)
.|+++.++. .|+.+..+.+....... .....+++++|||.+.. .+... .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 46677666654432211 11247788888876522 22221 12456899999999
Q ss_pred cccccCCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEE------ecC
Q 009675 168 HCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (529)
Q Consensus 168 H~~~~~g~~fr~~y~~-l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~------~~~ 240 (529)
|++.+|+ +.+.+.. +..++...++.++++||||+++ ..++..+++. ..+..+.....+...+. ..+
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9999876 3444443 3344455578999999999986 3667777762 22222221111111111 000
Q ss_pred ------chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC------------------------------CCc
Q 009675 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (529)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------------------g~~ 284 (529)
........+.+.+. .++++||||+++++++.+++.|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00014455555554 3568999999999999999988753 235
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----eC---CCCCHHHHHHHHcccCCCC--CC
Q 009675 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (529)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----~~---~p~s~~~y~Q~~GRagR~G--~~ 355 (529)
+..+||+|++++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 888999999999999999999999999999999999999999999999 66 7899999999999999998 58
Q ss_pred ceEEEEEecccHH
Q 009675 356 SKSLLYYGMDDRR 368 (529)
Q Consensus 356 g~~i~~~~~~d~~ 368 (529)
|.|+++++..+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 9999999988844
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-41 Score=378.93 Aligned_cols=325 Identities=21% Similarity=0.253 Sum_probs=243.1
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~ 89 (529)
-.|.++++++.+.+.+++ +||.+|+|+|.++++. +.++++++++||||+|||+++.+|++. .+++++|++|+++
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 357778999999999987 7999999999999999 788999999999999999999998873 5789999999999
Q ss_pred HHHHHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-hccCCccEEEEe
Q 009675 90 LMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAID 165 (529)
Q Consensus 90 L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~~~~~l~~iViD 165 (529)
|+.|+++.++. +|+.+..+.+....... .+ ...+++++||+.+.. .+... .....+++||||
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDS-----LWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHH-----HHHHCCGGGGGEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHH-----HHhCChhHhhccCEEEEe
Confidence 99999999854 46777666654433221 01 136788888776522 12221 124578999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCcc------------E
Q 009675 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL------------F 233 (529)
Q Consensus 166 EaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl------------~ 233 (529)
|||++.+++ +.+.+. .+...+++.++++||||+++. .++..+++.. .+........+ .
T Consensus 153 E~H~l~~~~--~~~~l~---~i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~ 222 (715)
T 2va8_A 153 ELHYLNDPE--RGPVVE---SVTIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKKE 222 (715)
T ss_dssp SGGGGGCTT--THHHHH---HHHHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTTE
T ss_pred chhhcCCcc--cchHHH---HHHHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcccc
Confidence 999998755 443333 333444488999999999853 5667777531 12111111111 1
Q ss_pred EEEEecC-------chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC------------------------
Q 009675 234 YEVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------ 282 (529)
Q Consensus 234 ~~v~~~~-------~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g------------------------ 282 (529)
+.+.+.+ ........+.+.+. .++++||||+++++++.+++.|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (715)
T 2va8_A 223 YNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300 (715)
T ss_dssp EEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSC
T ss_pred eeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcc
Confidence 1121111 01334455555554 45789999999999999999998642
Q ss_pred ------------CceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----eC-------CCCCH
Q 009675 283 ------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSM 339 (529)
Q Consensus 283 ------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----~~-------~p~s~ 339 (529)
..+..+||+|++++|..+++.|.+|.++|||||+++++|||+|++++||+ |+ .|.|.
T Consensus 301 ~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~ 380 (715)
T 2va8_A 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPI 380 (715)
T ss_dssp HHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CH
T ss_pred ccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCH
Confidence 24899999999999999999999999999999999999999999999999 99 89999
Q ss_pred HHHHHHHcccCCCC--CCceEEEEEeccc
Q 009675 340 EAFYQESGRAGRDQ--LPSKSLLYYGMDD 366 (529)
Q Consensus 340 ~~y~Q~~GRagR~G--~~g~~i~~~~~~d 366 (529)
.+|.||+|||||.| .+|.|+++++..+
T Consensus 381 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 381 MEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999998 4899999998776
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-41 Score=387.95 Aligned_cols=319 Identities=18% Similarity=0.251 Sum_probs=190.1
Q ss_pred HhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc--
Q 009675 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK-- 101 (529)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~~-- 101 (529)
..+|+.+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999999999999865 788999999999999999999885
Q ss_pred --CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEecccccccCCCCC
Q 009675 102 --GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDF 177 (529)
Q Consensus 102 --gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~~~~~g~~f 177 (529)
++.+..+.++........... . ..+++++||+.+.. .+.. .. ....+++|||||||++...+. +
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~---~---~~~IvI~Tp~~L~~-----~l~~~~~~~l~~~~liViDEaH~~~~~~~-~ 389 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEEETGGGCSTTCH-H
T ss_pred ccCceEEEEECCcchhhHHHHhc---c---CCCEEEecHHHHHH-----HHHcCccccccCCCEEEEECccccCCCcc-H
Confidence 788888877764433211111 1 26787777775422 2221 11 344589999999999987652 3
Q ss_pred HHHHHHHHHHHHh-----CCCCCEEEEeecCChh----------HHHHHHHHhccCCCeEEe---------ccCCCCccE
Q 009675 178 RPSYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNLF 233 (529)
Q Consensus 178 r~~y~~l~~l~~~-----~~~~~ii~lSAT~~~~----------~~~~i~~~l~~~~~~~~~---------~~~~r~nl~ 233 (529)
+.... .+... .+..++++||||+... ....+...++.. .+.. ....++...
T Consensus 390 ~~i~~---~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~ 464 (936)
T 4a2w_A 390 NVLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEID 464 (936)
T ss_dssp HHHHH---HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEE
T ss_pred HHHHH---HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcce
Confidence 32222 22222 4567899999999531 112222333211 1100 011222222
Q ss_pred EEEEec---------------------------------------C----------------------------------
Q 009675 234 YEVRYK---------------------------------------D---------------------------------- 240 (529)
Q Consensus 234 ~~v~~~---------------------------------------~---------------------------------- 240 (529)
+..... .
T Consensus 465 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~ 544 (936)
T 4a2w_A 465 VRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 544 (936)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred EEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 111100 0
Q ss_pred -----------------------------------------------------------------chhhHHHHHHHHHHh
Q 009675 241 -----------------------------------------------------------------LLDDAYADLCSVLKA 255 (529)
Q Consensus 241 -----------------------------------------------------------------~~~~~~~~l~~~l~~ 255 (529)
....++..|.++|..
T Consensus 545 ~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (936)
T 4a2w_A 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (936)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 001233445555554
Q ss_pred ----cCCceEEEEeCCcccHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCeEEEEeCcc
Q 009675 256 ----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAF 318 (529)
Q Consensus 256 ----~~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~ 318 (529)
.++.++||||++++.++.|++.|.+. |..+..+||+|++.+|.+++++|++ |+++|||||+++
T Consensus 625 ~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~ 704 (936)
T 4a2w_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 704 (936)
T ss_dssp TTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-
T ss_pred HhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCch
Confidence 35689999999999999999999986 5666777999999999999999999 999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
++|||+|+|++|||||+|.|+..|+||+|| ||. ++|.++++++..+...
T Consensus 705 ~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp -----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred hcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 999999999999999999999999999999 999 7899999998876543
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.6e-41 Score=378.34 Aligned_cols=325 Identities=21% Similarity=0.275 Sum_probs=246.0
Q ss_pred CCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHH
Q 009675 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (529)
Q Consensus 17 ~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~ 91 (529)
|.++++++.+.+.+++ +|+.+|+|+|.++++. +.++++++++||||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 6678899999999998 8999999999999998 889999999999999999999998873 478999999999999
Q ss_pred HHHHHHHHH---cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCccEEEEecc
Q 009675 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (529)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (529)
.|+++.+++ +|+.+..+.+....... .. ...+++++|||.+.. .+.. ......+++||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAEKFDS-----LLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHHHHHH-----HHHHTCTTGGGEEEEEEETG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHHHHHH-----HHHcChhhhhcCCEEEEECC
Confidence 999999864 47777777665432211 01 137888888876522 1222 122456899999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEE------ecC
Q 009675 168 HCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (529)
Q Consensus 168 H~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~------~~~ 240 (529)
|++.+++ +.+.+..+ ...+ ++.++++||||+++. .++..+++.. .+........+...+. ...
T Consensus 148 H~l~~~~--r~~~~~~l---l~~l~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 148 HLIGSRD--RGATLEVI---LAHMLGKAQIIGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp GGGGCTT--THHHHHHH---HHHHBTTBEEEEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEETT
T ss_pred cccCCCc--ccHHHHHH---HHHhhcCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeeccc
Confidence 9998766 33444333 2222 278999999999763 5667777532 1221111111111111 111
Q ss_pred ----chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC------------------C---------------C
Q 009675 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------I 283 (529)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~------------------g---------------~ 283 (529)
........+.+.++. ++++||||++++.++.++..|.+. + .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp SCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 012334445555543 568999999999999999998753 1 2
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----eC----CCCCHHHHHHHHcccCCCC--
Q 009675 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ-- 353 (529)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----~~----~p~s~~~y~Q~~GRagR~G-- 353 (529)
.+..+||+|++++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 4899999999999999999999999999999999999999999999998 66 5899999999999999998
Q ss_pred CCceEEEEEecccHH
Q 009675 354 LPSKSLLYYGMDDRR 368 (529)
Q Consensus 354 ~~g~~i~~~~~~d~~ 368 (529)
.+|.|+++++..+..
T Consensus 376 ~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPR 390 (720)
T ss_dssp SEEEEEEECSSSCHH
T ss_pred CCceEEEEecCccHH
Confidence 578999999988844
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4e-41 Score=364.75 Aligned_cols=316 Identities=20% Similarity=0.255 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc----CCce
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~~----gi~~ 105 (529)
+|||+|.++++.+++|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999998753 788999999999999999999886 7888
Q ss_pred eEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-h-ccCCccEEEEecccccccCCCCCHHHHHH
Q 009675 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (529)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-~-~~~~l~~iViDEaH~~~~~g~~fr~~y~~ 183 (529)
..+.++........... . ..+++++||+.+.. .+... . ....+++|||||||++..++. ++.....
T Consensus 84 ~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 84 ASISGATSDSVSVQHII---E---DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp EEECTTTGGGSCHHHHH---H---HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred EEEcCCCcchhhHHHHh---c---CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 88877764433211111 1 26777777775422 22211 1 345689999999999988652 3322211
Q ss_pred HHHHHHhC-----CCCCEEEEeecCChhH-------HH---HHHHHhccCCCeEEe---------ccCCCCccEEEEEec
Q 009675 184 LSSLRNYL-----PDVPILALTATAAPKV-------QK---DVMESLCLQNPLVLK---------SSFNRPNLFYEVRYK 239 (529)
Q Consensus 184 l~~l~~~~-----~~~~ii~lSAT~~~~~-------~~---~i~~~l~~~~~~~~~---------~~~~r~nl~~~v~~~ 239 (529)
.+.... +..++++||||+.... .. .+...++. ..+.. ....++...+.....
T Consensus 152 --~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (555)
T 3tbk_A 152 --YLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVAS 227 (555)
T ss_dssp --HHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCC
T ss_pred --HHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecC
Confidence 122221 4678999999996532 12 22233321 11111 112233322221110
Q ss_pred C-------------------------------------------------------------------------------
Q 009675 240 D------------------------------------------------------------------------------- 240 (529)
Q Consensus 240 ~------------------------------------------------------------------------------- 240 (529)
.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------------------------------------------------chhhHHHHHHHHHHh----c
Q 009675 241 ------------------------------------------------------------LLDDAYADLCSVLKA----N 256 (529)
Q Consensus 241 ------------------------------------------------------------~~~~~~~~l~~~l~~----~ 256 (529)
....++..+.++++. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 308 RKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 001233444444443 4
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCC------------CceEEecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccccc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GID 323 (529)
++.++||||+++..++.+++.|...| .....+||+|++++|.+++++|++ |+++|||||+++++|||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 56899999999999999999999864 345556679999999999999999 99999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHH
Q 009675 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (529)
Q Consensus 324 ip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~ 371 (529)
+|+|++|||||+|+|+..|+||+|| ||. ++|.+++++++.+.....
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999999999999999 999 899999999988765543
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=377.27 Aligned_cols=321 Identities=18% Similarity=0.193 Sum_probs=240.1
Q ss_pred HHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009675 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (529)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~ 107 (529)
...|||. |+|+|.++++++++|++++++||||+|||++|.+|++. .++++||++|+++|+.|+++.+.+....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4457886 99999999999999999999999999999999988765 5889999999999999999999985446666
Q ss_pred eccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
+.+.... .+..+++++|||.+.. .+. .......+++|||||||++.++++. . .+..
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~-----~L~~~~~~l~~l~lVViDEaH~l~d~~rg--~---~~e~ 215 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRS-----MLYRGSEVMREVAWVIFDEVHYMRDKERG--V---VWEE 215 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHH-----HHHHTCTTGGGEEEEEEETGGGGGCTTTH--H---HHHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHH-----HHHcCcchhhcCCEEEEechhhhcccchh--H---HHHH
Confidence 6554431 1246788888876531 221 2233457899999999999988743 2 2333
Q ss_pred HHHhCC-CCCEEEEeecCChhHHHHHHHHhcc--CCCeEEeccCCCC-ccEEEEEecC-----------c----------
Q 009675 187 LRNYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRP-NLFYEVRYKD-----------L---------- 241 (529)
Q Consensus 187 l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r~-nl~~~v~~~~-----------~---------- 241 (529)
+...+| ++++++||||+++.. ++..+++. ..+..+.....+| .+...+.... .
T Consensus 216 il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 216 TIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 444554 789999999987642 23344321 2222222222222 1211111100 0
Q ss_pred -------------------------h--------hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCc----
Q 009675 242 -------------------------L--------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS---- 284 (529)
Q Consensus 242 -------------------------~--------~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~---- 284 (529)
. ...+..+...+...+..++||||++++.|+.+++.|...++.
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0 122344566666666668999999999999999999775542
Q ss_pred -----------------------------------eEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccE
Q 009675 285 -----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (529)
Q Consensus 285 -----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~ 329 (529)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~v 453 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 453 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEE
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceE
Confidence 788999999999999999999999999999999999999999999
Q ss_pred EEE----eCC----CCCHHHHHHHHcccCCCCC--CceEEEEEecc-cHHHHHHHHHhc
Q 009675 330 VCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (529)
Q Consensus 330 VI~----~~~----p~s~~~y~Q~~GRagR~G~--~g~~i~~~~~~-d~~~~~~i~~~~ 377 (529)
||+ ||. |.|+..|+||+|||||.|. .|.|++++++. +...+..++...
T Consensus 454 VI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 454 VFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp EESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 999 998 8899999999999999996 59999999876 666677776543
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-40 Score=372.16 Aligned_cols=323 Identities=19% Similarity=0.247 Sum_probs=189.7
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
....+|+.+|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+.+.++++
T Consensus 240 ~~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 240 PPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 344578999999999999999999999999999999999999998754 789999999999999999999886
Q ss_pred ----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hh-ccCCccEEEEecccccccCCC
Q 009675 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGH 175 (529)
Q Consensus 102 ----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~-~~~~l~~iViDEaH~~~~~g~ 175 (529)
++.+..++++......... +.. ..+++++||+.+.. .+.. .. ....+++|||||||++...+
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~- 387 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEK---VIE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNH- 387 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHH---HHH---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTS-
T ss_pred cccCCceEEEEeCCcchhhhHHH---hhC---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCc-
Confidence 8888888877654432211 111 26787777775421 2221 11 34558999999999998744
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCEEEEeecCChh----------HHHHHHHHhccCCCeE-------EeccCCCCccE
Q 009675 176 DFRPSYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLV-------LKSSFNRPNLF 233 (529)
Q Consensus 176 ~fr~~y~~l~~l~~~-----~~~~~ii~lSAT~~~~----------~~~~i~~~l~~~~~~~-------~~~~~~r~nl~ 233 (529)
.++.... .+... .+..++++||||+... ....+...++...... +.....++...
T Consensus 388 ~~~~i~~---~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~ 464 (797)
T 4a2q_A 388 PYNVLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID 464 (797)
T ss_dssp HHHHHHH---HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCE
T ss_pred cHHHHHH---HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceE
Confidence 2332221 22222 4567899999999631 1222223332110000 00011222222
Q ss_pred EEEEec---------------------------------------C----------------------------------
Q 009675 234 YEVRYK---------------------------------------D---------------------------------- 240 (529)
Q Consensus 234 ~~v~~~---------------------------------------~---------------------------------- 240 (529)
+..... .
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 544 (797)
T 4a2q_A 465 VRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 544 (797)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 111110 0
Q ss_pred -----------------------------------------------------------------chhhHHHHHHHHHHh
Q 009675 241 -----------------------------------------------------------------LLDDAYADLCSVLKA 255 (529)
Q Consensus 241 -----------------------------------------------------------------~~~~~~~~l~~~l~~ 255 (529)
....++..|.+++..
T Consensus 545 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 001233445555543
Q ss_pred ----cCCceEEEEeCCcccHHHHHHHHHhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCeEEEEeCcc
Q 009675 256 ----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAF 318 (529)
Q Consensus 256 ----~~~~~~IIf~~s~~~~e~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~ 318 (529)
.++.++||||++++.++.+++.|++. |..+..+||+|++++|..++++|++ |+++|||||+++
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~ 704 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 704 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCch
Confidence 56689999999999999999999874 5667778999999999999999999 999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 319 ~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
++|||+|+|++|||||+|+|+..|+||+|| ||. ++|.|+++++..+...
T Consensus 705 ~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp ------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 999999999999999999999999999999 999 7999999999887643
No 32
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-39 Score=355.33 Aligned_cols=321 Identities=19% Similarity=0.190 Sum_probs=234.4
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----cC
Q 009675 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KG 102 (529)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~----~g 102 (529)
.++.+|+ .|+|+|..+++.+++|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+.. +|
T Consensus 76 ~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 76 SRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3346899 89999999999999999 99999999999999999983 477899999999999998887766 58
Q ss_pred CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-cCCCC--
Q 009675 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD-- 176 (529)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~~~-~~g~~-- 176 (529)
+.+..+.++.....+...+. .+|+|+||..++-......+ .....++.+.++||||||.++ +.+..
T Consensus 153 l~v~~i~gg~~~~~r~~~~~--------~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYA--------ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred CeEEEEeCCCCHHHHHHhcC--------CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 89888888877665443321 57777777655322222222 112345679999999999987 54411
Q ss_pred --------CHHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCCh---hH-----------
Q 009675 177 --------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KV----------- 207 (529)
Q Consensus 177 --------fr~~y~~l~~l~~~~~----------~~~ii-----------------~lSAT~~~---~~----------- 207 (529)
-...|..+..+...+| +.+++ ++|||.+. .+
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 0123455555555554 23343 55665432 11
Q ss_pred ----------------------------------------------------------------------------HHHH
Q 009675 208 ----------------------------------------------------------------------------QKDV 211 (529)
Q Consensus 208 ----------------------------------------------------------------------------~~~i 211 (529)
...+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 1122
Q ss_pred HHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceE
Q 009675 212 MESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (529)
Q Consensus 212 ~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~ 286 (529)
....++. ++..+.++|..... +.+. ...+++..|.+.+.. ..+.++||||+|++.++.|++.|.+.|+++.
T Consensus 385 ~~iY~l~---vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~ 460 (844)
T 1tf5_A 385 RNIYNMQ---VVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHCCC---EEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHhCCc---eEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 2222221 11123344444321 1222 235677778777754 3466899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccC--------CccEEEEeCCCCCHHHHHHHHcccCCCCCCceE
Q 009675 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~ 358 (529)
.+||++.+.+|..+.+.++.| .|+|||+++|||+|++ ++.+||+|++|.|.+.|.||+||+||.|.+|.+
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999888887666666555 6999999999999999 788999999999999999999999999999999
Q ss_pred EEEEecccH
Q 009675 359 LLYYGMDDR 367 (529)
Q Consensus 359 i~~~~~~d~ 367 (529)
++|++.+|.
T Consensus 539 ~~~vs~eD~ 547 (844)
T 1tf5_A 539 QFYLSMEDE 547 (844)
T ss_dssp EEEEETTSS
T ss_pred EEEecHHHH
Confidence 999998873
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-39 Score=342.14 Aligned_cols=314 Identities=19% Similarity=0.242 Sum_probs=234.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----CCeEEEeCcHHHHHHHHHHHHHHc-CC---ceeEec
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~----~~~~lVi~P~~~L~~q~~~~l~~~-gi---~~~~~~ 109 (529)
+|||+|.++++.++.+ ++++.+|||+|||++++++++.. ++++|||+|+++|+.|+.+.+.+. +. .+..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5999999999999999 99999999999999999887753 789999999999999999999985 55 677777
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
+..........+. ..+++++||+.+.. .+. .......+++|||||||++.... .++ ..+..+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~-----~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~---~~~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIEN-----DLLAGRISLEDVSLIVFDEAHRAVGNY-AYV---FIAREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHH-----HHHTTSCCTTSCSEEEEETGGGCSTTC-HHH---HHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHH-----HHhcCCcchhhceEEEEECCcccCCCC-cHH---HHHHHHH
Confidence 7776655433332 26787777775532 111 12345678999999999997532 122 1223344
Q ss_pred HhCCCCCEEEEeecCChh--HHHHHHHHhccCCCeEEecc-------CCCCccEEEEEec--------------------
Q 009675 189 NYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYK-------------------- 239 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~-------~~r~nl~~~v~~~-------------------- 239 (529)
...+..++++||||+... ....+...++...+...... +......+.....
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999832 33445555543322111100 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 009675 240 -------------------------------------------------------------------------------- 239 (529)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (529)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ---------------------------CchhhHHHHHHHHHHh----cCCceEEEEeCCcccHHHHHHHHHhCCCceEEe
Q 009675 240 ---------------------------DLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (529)
Q Consensus 240 ---------------------------~~~~~~~~~l~~~l~~----~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~ 288 (529)
.....++..+.++++. .++.++||||++++.++.+++.|.+.|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 0111244555566655 567899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE
Q 009675 289 HA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (529)
Q Consensus 289 h~--------~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~ 360 (529)
|| +++.++|.+++++|++|+.+|||||+++++|||+|++++||+++.|+++..|+||+||+||.|+ |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEecccHHH
Q 009675 361 YYGMDDRRR 369 (529)
Q Consensus 361 ~~~~~d~~~ 369 (529)
++.+++.+.
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999887654
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.8e-41 Score=373.06 Aligned_cols=317 Identities=20% Similarity=0.195 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhcC---CCeEEEeCcHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMEN 93 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g------~dvlv~apTGsGKTl~~~lp~l~~---~~~~lVi~P~~~L~~q 93 (529)
..++.+.+.+.+|| +|+++|+++++.++++ ++++++||||+|||++|++|++.. +.+++|++||++|+.|
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQ 432 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHH
Confidence 34566666667999 7999999999999875 599999999999999999998764 7899999999999999
Q ss_pred HHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccc
Q 009675 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (529)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (529)
+.+.++++ ++.+..++++.....+...+..+..+. .+++++||+.+ ........++++||||+|+
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccch
Confidence 99998874 788999999998888888888887765 77888887643 2334567799999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEec-cCCCCccEEEEEecCchhhHHHH
Q 009675 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (529)
Q Consensus 170 ~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~ 248 (529)
+ |...|. .++...++.++++||||+.+.... ....+.....++.. ...+..+...+..... ...
T Consensus 502 ~---g~~qr~------~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~----~~~ 566 (780)
T 1gm5_A 502 F---GVKQRE------ALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR----VNE 566 (780)
T ss_dssp C--------C------CCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSST----HHH
T ss_pred h---hHHHHH------HHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccch----HHH
Confidence 5 432221 122333578999999999887654 22333333333322 2233444433332222 223
Q ss_pred HHHHHHh--cCCceEEEEeCCc--------ccHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 009675 249 LCSVLKA--NGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (529)
Q Consensus 249 l~~~l~~--~~~~~~IIf~~s~--------~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (529)
+.+.+.. ..+.+++|||++. ..++.+++.|.+ .++.+..+||+|++++|..++++|++|+++|||||
T Consensus 567 l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 567 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 3333332 2456789999966 457888899988 47899999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~-s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
+++++|||+|++++||+++.|. +...|.||+||+||.|++|.|++++.+.+
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 9999999999999999999996 78999999999999999999999998433
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.7e-41 Score=388.60 Aligned_cols=325 Identities=16% Similarity=0.214 Sum_probs=241.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~ 99 (529)
+++.+.+.+.+||. | |+|.++|+.+++|+|++++||||+|||+ |++|++. .++++||++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 44667788889999 9 9999999999999999999999999998 8888875 36889999999999999999998
Q ss_pred Hc----CC----ceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 100 ~~----gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
++ ++ .+..+.++.....+......+.. .+++++||+.+. .+... ++.+++|||||||+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~------~~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLS------KHYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHH------HCSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHH------HHHHH--hccCCEEEEeChhhhh
Confidence 74 45 66777777766665444444443 567777765442 22111 4578999999999999
Q ss_pred cCCCCCHHHHHHHHHHH----Hh-CCCCCEEEEeecCChhHHH---HHH-HHhccCCCeEEeccCCCCccEEEEEecCch
Q 009675 172 SWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQK---DVM-ESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (529)
Q Consensus 172 ~~g~~fr~~y~~l~~l~----~~-~~~~~ii~lSAT~~~~~~~---~i~-~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~ 242 (529)
+||+++++.+..++... .. .+..+++++|||+++. .. .+. ...... +.......+++.+.+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 99987777666553110 11 1357889999999986 31 111 111111 11112234455544442
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEE----eCcc
Q 009675 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (529)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa----T~a~ 318 (529)
.++...|.++++.. +.++||||+|++.|+.+++.|++. +.+..+||++ ..+++.|++|+.+|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 23344555666654 467999999999999999999988 9999999998 37789999999999999 8999
Q ss_pred ccccccCCc-cEEEEeCCC-------------------------------------------------------------
Q 009675 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (529)
Q Consensus 319 ~~GIDip~v-~~VI~~~~p------------------------------------------------------------- 336 (529)
++|||+|+| ++|||+|+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHHHHHHHHcccCCCCCCc--eEEEEEecccHHHHHHHHHhcc
Q 009675 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 337 ----------~s~~~y~Q~~GRagR~G~~g--~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
.+..+|+||+|||||.|..| .+++++...|...+..+.+...
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 467 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHh
Confidence 79999999999999988776 4888888888877776666544
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.3e-38 Score=366.22 Aligned_cols=323 Identities=20% Similarity=0.191 Sum_probs=253.0
Q ss_pred CCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHHHh---cCCCeEEEeCcHH
Q 009675 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (529)
Q Consensus 18 ~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~----g~--dvlv~apTGsGKTl~~~lp~l---~~~~~~lVi~P~~ 88 (529)
..+.+.+.....+...|||+ +||+|.++++.+++ |+ |+++++|||+|||++++++++ ..+.+++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34566777888888889997 79999999999986 65 999999999999999987775 4578999999999
Q ss_pred HHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEE
Q 009675 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (529)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iVi 164 (529)
+|+.|+.+.+++. ++.+..+++..+..........+..+. .+++++||..+. +......+++|||
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~---------~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQ---------SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHH---------SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------CCccccccceEEE
Confidence 9999999999863 567788888888888777777787765 778888876442 2344567999999
Q ss_pred ecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEecc-CCCCccEEEEEecCchh
Q 009675 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLD 243 (529)
Q Consensus 165 DEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~~ 243 (529)
||||++ |... +.. ++...++.++++||||+.+...... ..++.++..+... ..+..+...+.... ..
T Consensus 732 DEaH~~---g~~~---~~~---l~~l~~~~~vl~lSATp~p~~l~~~--~~~~~~~~~i~~~~~~r~~i~~~~~~~~-~~ 799 (1151)
T 2eyq_A 732 DEEHRF---GVRH---KER---IKAMRANVDILTLTATPIPRTLNMA--MSGMRDLSIIATPPARRLAVKTFVREYD-SM 799 (1151)
T ss_dssp ESGGGS---CHHH---HHH---HHHHHTTSEEEEEESSCCCHHHHHH--HTTTSEEEECCCCCCBCBCEEEEEEECC-HH
T ss_pred echHhc---ChHH---HHH---HHHhcCCCCEEEEcCCCChhhHHHH--HhcCCCceEEecCCCCccccEEEEecCC-HH
Confidence 999994 4221 122 3333457889999999998876533 3344443333322 23333433333322 12
Q ss_pred hHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccc
Q 009675 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (529)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (529)
.....+...+. .+++++|||++++.++.+++.|++. ++.+..+||+|++++|.+++++|.+|+++|||||+++++|
T Consensus 800 ~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 23333433333 4678999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCC-CCCHHHHHHHHcccCCCCCCceEEEEEeccc
Q 009675 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (529)
Q Consensus 322 IDip~v~~VI~~~~-p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d 366 (529)
||+|++++||+++. +.++..|+||+||+||.|+.|.|++++...+
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999988 5699999999999999999999999997653
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.9e-38 Score=372.39 Aligned_cols=337 Identities=18% Similarity=0.214 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEeCcHHHHHHHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIG 97 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~~-----~~~~lVi~P~~~L~~q~~~~ 97 (529)
+...+.+.. .+|+.|+|+|.++++.++.+ ++++++||||||||++|.+|++.. ++++|||+|+++|+.|+++.
T Consensus 913 ~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 913 NSAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp CHHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHH
Confidence 344444443 37899999999999999865 689999999999999999998753 67899999999999999999
Q ss_pred HHH-----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 98 LKE-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 98 l~~-----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
+++ .|+.+..+.+......+ . .. ..+++++|||.+.. .............+++||+||+|++.+
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~~~~~--~---~~----~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETSTDLK--L---LG----KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHHHHHH--H---HH----HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHhchhcCCEEEEEECCCCcchh--h---cC----CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCC
Confidence 875 35666666554433221 1 11 26788888885411 111111111234689999999999976
Q ss_pred CCCCCHHHHH----HHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEe-ccCCCCc-cEEEEEecC--chh
Q 009675 173 WGHDFRPSYR----KLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN-LFYEVRYKD--LLD 243 (529)
Q Consensus 173 ~g~~fr~~y~----~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-l~~~v~~~~--~~~ 243 (529)
. ..+.+. ++..+.... +++++|+||||.++. .++.++|+......+. .+..||. +...+...+ ...
T Consensus 1061 ~---rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1061 E---NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp T---THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred C---CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 3 334433 333333333 378999999999864 6789999876544433 2333443 332222211 111
Q ss_pred hHH----HHHHHHHH-hcCCceEEEEeCCcccHHHHHHHHHhC----------------------------------CCc
Q 009675 244 DAY----ADLCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GIS 284 (529)
Q Consensus 244 ~~~----~~l~~~l~-~~~~~~~IIf~~s~~~~e~l~~~L~~~----------------------------------g~~ 284 (529)
... ..+...+. ...+.++||||+||+.|+.++..|... ..+
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~G 1215 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNG 1215 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCC
Confidence 111 22223333 345678999999999999988776421 135
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----------eCCCCCHHHHHHHHcccCCCCC
Q 009675 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGRDQL 354 (529)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----------~~~p~s~~~y~Q~~GRagR~G~ 354 (529)
++.+||||++++|..+.+.|++|.++|||||+.+++|||+|.+++||. ...|.+..+|.|++|||||.|.
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 889999999999999999999999999999999999999999999982 3347799999999999999986
Q ss_pred --CceEEEEEecccHHHHHHHHHhc
Q 009675 355 --PSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 355 --~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
.|.|++++...+....+.++...
T Consensus 1296 d~~G~avll~~~~~~~~~~~ll~~~ 1320 (1724)
T 4f92_B 1296 DDEGRCVIMCQGSKKDFFKKFLYEP 1320 (1724)
T ss_dssp CSCEEEEEEEEGGGHHHHHHHTTSC
T ss_pred CCceEEEEEecchHHHHHHHHhCCC
Confidence 78999999999998888887654
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-38 Score=342.80 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCC----ceeEec
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi----~~~~~~ 109 (529)
+|||+|.++++.+++++++++++|||+|||++|++++.. ..+++|||+|+++|+.|+.+.+++++. ....+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988875 345999999999999999999998633 344555
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
++...... .....+++++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 44433221 12347899999987655421 2234589999999999875 23444555
Q ss_pred hC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccC--------CCCccEEEEEec-----------Cch-------
Q 009675 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYK-----------DLL------- 242 (529)
Q Consensus 190 ~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--------~r~nl~~~v~~~-----------~~~------- 242 (529)
.+ +..++++||||+++.... +....++..+..+..+. ..+.....+... ...
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 567899999999655322 12222222222221111 111111111100 000
Q ss_pred ---hhHHHHHHHHHHhc---CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe-
Q 009675 243 ---DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (529)
Q Consensus 243 ---~~~~~~l~~~l~~~---~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT- 315 (529)
..+...+.+.+... ++.+.|||++ .+.++.+++.|.+.+..+..+||+++.++|.++++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 11223344444433 5666777777 888999999999998899999999999999999999999999999999
Q ss_pred CccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 316 ~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
+++++|+|+|++++||+++.|.|+..|+|++||+||.|+.+.++++|+..
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 99999999999999999999999999999999999999888666666633
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.8e-39 Score=340.49 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=204.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009675 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~~l~g~dv-lv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (529)
|+.+++|.|+ +|+.+++++++ ++.||||||||++|++|++. .++++||++|+++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7889999985 79999999988 88999999999999999864 4779999999999999999988643 222211
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
..... ...+...+.++|+.. +...+........+++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~-----l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHAT-----FTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHH-----HHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHH-----HHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 111233454554433 2334444455678999999999987 222 22222222 2233
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcc
Q 009675 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (529)
Q Consensus 190 ~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~ 269 (529)
..++.++++||||+++.+.. .+ ...+..+......|...+ ..+.+++... ++++||||+|++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~----~~-~~~~~~~~~~~~~p~~~~------------~~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP----FP-QSNSPIEDIEREIPERSW------------NTGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS----SC-CCSSCEEEEECCCCSSCC------------SSSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh----hh-cCCCceEecCccCCchhh------------HHHHHHHHhC-CCCEEEEcCCHH
Confidence 45689999999999875432 11 122222221111111110 1122334443 458999999999
Q ss_pred cHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeC---------------
Q 009675 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (529)
Q Consensus 270 ~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~--------------- 334 (529)
.++.+++.|++.|+.+..+|+++. .++++.|++|+.+|||||+++++|||+|+ ++|||+|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHcccCCCCC-CceEEEEEec
Q 009675 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (529)
Q Consensus 335 -----~p~s~~~y~Q~~GRagR~G~-~g~~i~~~~~ 364 (529)
.|.|.++|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888753
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.8e-36 Score=330.92 Aligned_cols=326 Identities=17% Similarity=0.134 Sum_probs=240.3
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~---- 100 (529)
++.++.+|+ .|++.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 455567899 79999999999999998 99999999999999999964 367899999999999998887766
Q ss_pred cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHH---HhhhccCCccEEEEecccccc-cCCC-
Q 009675 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGH- 175 (529)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l---~~~~~~~~l~~iViDEaH~~~-~~g~- 175 (529)
+|+.+..+.++.....+...+. .+|+|+||..++-......+ .....++.+.++||||||.++ +.+.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~--------~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYN--------ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred cCCeEEEEeCCCCHHHHHHhcC--------CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 6899988888877665544332 57877777654322111111 112445679999999999997 3321
Q ss_pred ---------CCHHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCChh---HHHHHHH-Hh
Q 009675 176 ---------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAPK---VQKDVME-SL 215 (529)
Q Consensus 176 ---------~fr~~y~~l~~l~~~~~----------~~~ii-----------------~lSAT~~~~---~~~~i~~-~l 215 (529)
+-...|..+..+...+| +.+++ ++|||.++. +..-+.. .+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 11345677777777776 34555 678886642 2111111 11
Q ss_pred ccCC-------C--------------------------------------------------------------------
Q 009675 216 CLQN-------P-------------------------------------------------------------------- 220 (529)
Q Consensus 216 ~~~~-------~-------------------------------------------------------------------- 220 (529)
...+ .
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 0000 0
Q ss_pred --------eEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEE
Q 009675 221 --------LVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (529)
Q Consensus 221 --------~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~ 287 (529)
.++..+.++|..... +.+. ...+++..+.+.+.. ..+.++||||+|++.++.|++.|.+.|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 011112233332221 1222 235677778777754 35678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCc----------------------------------------
Q 009675 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------------- 327 (529)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v---------------------------------------- 327 (529)
+||++.+.++..+.+.|+.| .|+|||+++|||+|++.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888887777888777 699999999999999975
Q ss_pred ------------cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 328 ------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 328 ------------~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
.+||+++.|.|.+.|.|++||+||.|.+|.++.|++.+|.
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.4e-37 Score=335.39 Aligned_cols=319 Identities=18% Similarity=0.151 Sum_probs=219.6
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH----
Q 009675 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (529)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~---- 100 (529)
++.++.+|. .|+|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 445566786 69999999999999998 99999999999999999974 367899999999999998888766
Q ss_pred cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-------hhccCCccEEEEecccccc-c
Q 009675 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-------IHSRGLLNLVAIDEAHCIS-S 172 (529)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-------~~~~~~l~~iViDEaH~~~-~ 172 (529)
+|+.+..+.++.....+...+ ..+|+|+||-.+. +..|.. ...++.+.++||||||.++ +
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~----fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD 209 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYG----FDYLRDNMAFSPEERVQRKLHYALVDEVDSILID 209 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHH----HHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTT
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhh----HHHHHhhhhccHhHhcccCCcEEEECchHHHHHh
Confidence 588888888887765443322 1566666554331 122222 2345779999999999998 4
Q ss_pred CCCC----------CHHHHHHHHHHHHhCC---------------------CCCEE------------------------
Q 009675 173 WGHD----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ 197 (529)
Q Consensus 173 ~g~~----------fr~~y~~l~~l~~~~~---------------------~~~ii------------------------ 197 (529)
.|.. -...|..+..+...+| +.+++
T Consensus 210 ~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~ 289 (853)
T 2fsf_A 210 EARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGES 289 (853)
T ss_dssp TTTCEEEEEEC---------------------------------------------------------------------
T ss_pred cCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccc
Confidence 4410 0012333333333333 12222
Q ss_pred EEeecCCh---hHH------------------------------------------------------------------
Q 009675 198 ALTATAAP---KVQ------------------------------------------------------------------ 208 (529)
Q Consensus 198 ~lSAT~~~---~~~------------------------------------------------------------------ 208 (529)
++|||.++ .+.
T Consensus 290 Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~ 369 (853)
T 2fsf_A 290 LYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369 (853)
T ss_dssp -------------------------------------------------------------------CCCCCEEEEEEEH
T ss_pred ccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeeh
Confidence 66777542 110
Q ss_pred ---------------------HHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEE
Q 009675 209 ---------------------KDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAI 262 (529)
Q Consensus 209 ---------------------~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~I 262 (529)
..+.+..++ .++..+.++|..... +.+. ...+++..+.+.++. ..+.++|
T Consensus 370 qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l---~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvL 445 (853)
T 2fsf_A 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKL---DTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVL 445 (853)
T ss_dssp HHHHTTSSEEEEEECTTCCCHHHHHHHHCC---EEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHhhhhhhhcCCCCchhHHHHHHHHhCC---cEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEE
Confidence 001111110 111122334433221 1222 235678888887754 3567899
Q ss_pred EEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCc---------------
Q 009675 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--------------- 327 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v--------------- 327 (529)
|||+|++.++.|++.|.+.|+++..+||++.+.++..+.++|+.| .|+|||+++|||+|++..
T Consensus 446 Vft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~ 523 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTA 523 (853)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCS
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchh
Confidence 999999999999999999999999999999888888888888888 699999999999999973
Q ss_pred ----------------------cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 328 ----------------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 328 ----------------------~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
.+||++++|.|.+.|.||+||+||.|.+|.+++|++.+|.
T Consensus 524 ~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 524 EQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998873
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.8e-39 Score=352.85 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=202.7
Q ss_pred CCcHHHH-----HHHHHHH------cCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcC
Q 009675 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (529)
Q Consensus 38 ~~r~~Q~-----~~i~~~l------~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~g 102 (529)
.|+++|+ ++|+.++ +|+|++++||||+|||++|++|++. .+.++||++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999888 8999999999999999999998874 36789999999999999999998765
Q ss_pred CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCccccc---Chh-hHHHHHhhhccCCccEEEEecccccccCCCCCH
Q 009675 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (529)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr 178 (529)
+.. .... .. .+.||..+. +.+ +...+........+++|||||||++ +..+.
T Consensus 295 i~~--~~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~---~~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT---DPASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC---CHHHH
T ss_pred eee--eccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc---CccHH
Confidence 431 1100 00 033443221 222 2223333335677999999999998 21122
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCC
Q 009675 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (529)
Q Consensus 179 ~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (529)
..+..+..+.. .++.++++||||+++.+.. ......+.. ........ ..+..+...+.+ .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~----------~v~~~~~~---~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVH----------DVSSEIPD---RAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEE----------EEECCCCS---SCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceE----------EEeeecCH---HHHHHHHHHHHh-CC
Confidence 22233333222 2578999999999876321 010111111 11100000 111112233433 45
Q ss_pred ceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE------
Q 009675 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~------ 332 (529)
.++||||++++.++.+++.|++.|+.+..+||+ +|.++++.|++|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 689999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHcccCCC-CCCceEEEEE---ecccHHHHHHH
Q 009675 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFI 373 (529)
Q Consensus 333 --------------~~~p~s~~~y~Q~~GRagR~-G~~g~~i~~~---~~~d~~~~~~i 373 (529)
|++|.+.++|+||+||+||. |++|.|++|+ ++.|...+..+
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 56899999999999999999 7899999996 45555444443
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.8e-37 Score=366.98 Aligned_cols=333 Identities=19% Similarity=0.219 Sum_probs=237.0
Q ss_pred HHHHHhc-CCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc--------------CCCeEEEeCcHHHHH
Q 009675 28 KLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPLIALM 91 (529)
Q Consensus 28 ~~l~~~f-g~~~~r~~Q~~~i~~~l~-g~dvlv~apTGsGKTl~~~lp~l~--------------~~~~~lVi~P~~~L~ 91 (529)
+..+..| ||++|+++|.++++.++. +++++++||||||||++|.+|++. .+.++|+|+|+++|+
T Consensus 68 ~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa 147 (1724)
T 4f92_B 68 KYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLV 147 (1724)
T ss_dssp GGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHH
Confidence 3344556 799999999999999885 689999999999999999999873 256899999999999
Q ss_pred HHHHHHHHH----cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecc
Q 009675 92 ENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (529)
Q Consensus 92 ~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEa 167 (529)
+|+++.+++ .|+.+..+.+....... .....+++++|||.+.. .+.........+.+++|||||+
T Consensus 148 ~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---------~~~~~~IlVtTpEkld~--llr~~~~~~~l~~v~~vIiDEv 216 (1724)
T 4f92_B 148 QEMVGSFGKRLATYGITVAELTGDHQLCKE---------EISATQIIVCTPEKWDI--ITRKGGERTYTQLVRLIILDEI 216 (1724)
T ss_dssp HHHHHHHHHHHTTTTCCEEECCSSCSSCCT---------TGGGCSEEEECHHHHHH--HTTSSTTHHHHTTEEEEEETTG
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCCCCcc---------ccCCCCEEEECHHHHHH--HHcCCccchhhcCcCEEEEecc
Confidence 999998876 47777777665432211 01236888888885411 0000000112356899999999
Q ss_pred cccccCCCCCHHHHHH--HHHH----HHhCCCCCEEEEeecCChhHHHHHHHHhccCCC--eEEeccCCCC-ccEEEEEe
Q 009675 168 HCISSWGHDFRPSYRK--LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRP-NLFYEVRY 238 (529)
Q Consensus 168 H~~~~~g~~fr~~y~~--l~~l----~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~r~-nl~~~v~~ 238 (529)
|.+.+ -|..... +.++ ...-+++++|+||||.++. +++.++|+...+ ..+..+..|| .+...+..
T Consensus 217 H~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~ 290 (1724)
T 4f92_B 217 HLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVG 290 (1724)
T ss_dssp GGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCE
T ss_pred hhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEEec
Confidence 98854 2433221 1222 2234578999999999864 678888875422 1222223344 23322221
Q ss_pred c--CchhhHHHH----HHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhC------------------------------
Q 009675 239 K--DLLDDAYAD----LCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG------------------------------ 281 (529)
Q Consensus 239 ~--~~~~~~~~~----l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~------------------------------ 281 (529)
. ......... +.+.+.+ ..+.++||||+||+.|+.+++.|.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1724)
T 4f92_B 291 ITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKN 370 (1724)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCST
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhccccc
Confidence 1 111122222 2222322 34568999999999999999888631
Q ss_pred -------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE----eC------CCCCHHHHHH
Q 009675 282 -------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEAFYQ 344 (529)
Q Consensus 282 -------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~----~~------~p~s~~~y~Q 344 (529)
..+++++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|-+..+|.|
T Consensus 371 ~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Q 450 (1724)
T 4f92_B 371 LELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQ 450 (1724)
T ss_dssp HHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHH
Confidence 135789999999999999999999999999999999999999999999996 44 3568999999
Q ss_pred HHcccCCCC--CCceEEEEEecccHHHHHHHHHhc
Q 009675 345 ESGRAGRDQ--LPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 345 ~~GRagR~G--~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
++|||||.| ..|.++++.+..+......++...
T Consensus 451 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 451 MLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred hhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 999999987 478999999999887777776553
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.6e-38 Score=335.16 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=189.7
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHh
Q 009675 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (529)
Q Consensus 49 ~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~ 124 (529)
++++|+|++++||||||||++|++|++. .+.+++|++||++|+.|+.+.++.+++. .....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eeccc-------------
Confidence 3568999999999999999999998875 3678999999999999999998865432 11100
Q ss_pred hcCCCcccEEEeCccccc---Chh-hHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEe
Q 009675 125 DSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (529)
Q Consensus 125 ~~~~~~~~ll~~tpe~v~---t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lS 200 (529)
.. .++||..+. +.+ +...+........++++||||||++ + .+|...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 244554332 111 1222223334677999999999998 2 223333333433332 3578999999
Q ss_pred ecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh
Q 009675 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (529)
Q Consensus 201 AT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~ 280 (529)
||+++.+.. ......+... ....... .....+...+.+. +.++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIED----------VQTDIPS---EPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEE----------EECCCCS---SCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeE----------eeeccCh---HHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999877432 1111111111 0000000 0111122333333 46899999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE-------------------eCCCCCHHH
Q 009675 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (529)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~-------------------~~~p~s~~~ 341 (529)
.|+.+..+|| ++|.++++.|++|+++|||||+++++|||+| +++||| ++.|.+.++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHHcccCCC-CCCceEEEEE---ecccHHHHHHHHH
Q 009675 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFILS 375 (529)
Q Consensus 342 y~Q~~GRagR~-G~~g~~i~~~---~~~d~~~~~~i~~ 375 (529)
|+||+||+||. |++|.|++|+ ++.|...++.+..
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 99999999998 6899999997 5666655555443
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.7e-38 Score=344.25 Aligned_cols=308 Identities=13% Similarity=0.086 Sum_probs=212.5
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~ 95 (529)
+.+++.+..++.. ....+.|.|+.+++.+++|+|+++.||||||||++|++|++. .+.++||++|+++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 4455555555543 246788888888999999999999999999999999999884 4678999999999999999
Q ss_pred HHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChh-hHHHHHhhhccCCccEEEEecccccccCC
Q 009675 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (529)
Q Consensus 96 ~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~-~~~~l~~~~~~~~l~~iViDEaH~~~~~g 174 (529)
+.++... ..+...... ....+...+.++ +.+ +...+........+++|||||||++ +.
T Consensus 233 ~~l~~~~--v~~~~~~l~-----------~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~- 291 (618)
T 2whx_A 233 EALRGLP--IRYQTPAVK-----------SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DP- 291 (618)
T ss_dssp HHTTTSC--EEECCTTSS-----------CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SH-
T ss_pred HHhcCCc--eeEecccce-----------eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Cc-
Confidence 8887432 221111000 011112222222 333 2223333344678999999999998 22
Q ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHH
Q 009675 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (529)
Q Consensus 175 ~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~ 254 (529)
.|...+..+..... .++.++++||||+++.+.. ... .++..+......+. ..+..+.+++.
T Consensus 292 -~~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~~~------------~~~~~ll~~l~ 352 (618)
T 2whx_A 292 -CSVAARGYISTRVE-MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREIPE------------RSWNTGFDWIT 352 (618)
T ss_dssp -HHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCCCS------------SCCSSSCHHHH
T ss_pred -cHHHHHHHHHHHhc-ccCccEEEEECCCchhhhh----hhc-cCCceeeecccCCH------------HHHHHHHHHHH
Confidence 24444444433322 1578999999999876432 111 12222211111110 11112233344
Q ss_pred hcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEE----
Q 009675 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (529)
Q Consensus 255 ~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~V---- 330 (529)
+. ++++||||+|++.++.+++.|++.|+.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 353 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 DY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp HC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred hC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 43 5589999999999999999999999999999984 788899999999999999999999999997 9888
Q ss_pred ----------------EEeCCCCCHHHHHHHHcccCCCCC-CceEEEEEe---cccHHHHHHHHH
Q 009675 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (529)
Q Consensus 331 ----------------I~~~~p~s~~~y~Q~~GRagR~G~-~g~~i~~~~---~~d~~~~~~i~~ 375 (529)
|+++.|.|.++|+||+||+||.|. +|.|++|++ +.|...+..+.+
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 778889999999999999999974 899999997 666655555543
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.6e-38 Score=332.69 Aligned_cols=288 Identities=18% Similarity=0.165 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEeccCccHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (529)
+|+|+|.++++.+++++++++.+|||+|||++|+.++...+..+|||+|+++|+.|+.+.+.++++. +..+++....
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 6899999999999999999999999999999999999888899999999999999999999999888 7777665431
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCE
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~i 196 (529)
..+++++||+.+... .... ...+++|||||||++...+ |+ .+...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~------~~~~-~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVN------AEKL-GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHT------HHHH-TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHH------HHHh-cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 256777777654321 1111 2358999999999998754 43 25566778889
Q ss_pred EEEeecCChhHHH--HHHHHhc---------------cCCCeEE--eccC-------------------CCCccE-----
Q 009675 197 LALTATAAPKVQK--DVMESLC---------------LQNPLVL--KSSF-------------------NRPNLF----- 233 (529)
Q Consensus 197 i~lSAT~~~~~~~--~i~~~l~---------------~~~~~~~--~~~~-------------------~r~nl~----- 233 (529)
++||||+...... .+...++ +..+... .... ...++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999742100 0111111 1111110 0000 000000
Q ss_pred -E-E-EE-----e---------------cCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecC
Q 009675 234 -Y-E-VR-----Y---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (529)
Q Consensus 234 -~-~-v~-----~---------------~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~ 290 (529)
+ . +. . ......+...+.++++...+.++||||++++.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0 0 00 0 00012356677788888778899999999999999999873 567999
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC-ceEEEE
Q 009675 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (529)
Q Consensus 291 ~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~-g~~i~~ 361 (529)
+++.++|.+++++|++|+++|||||+++++|+|+|++++||+++.|.|+..|+|++||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 455443
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.9e-36 Score=337.16 Aligned_cols=327 Identities=16% Similarity=0.146 Sum_probs=236.5
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc------C--CCeEEEe
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g-~dvlv~apTGsGKTl~~~lp~l~------~--~~~~lVi 84 (529)
...|..+++++.+.+.++.. | ..|.+.|+++|..++.+ ++++++||||+|||+ ++|++. . +..++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 44688899999999999885 6 67888999988887754 679999999999998 555542 1 4569999
Q ss_pred CcHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEE
Q 009675 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iV 163 (529)
+|+++|+.|+.+.+.. ++.......+..... . .......+++++||+.+ ...+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~------~--~~~~~~~~I~v~T~G~l-----~r~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF------E--NKTSNKTILKYMTDGML-----LREAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT------E--EECCTTCSEEEEEHHHH-----HHHHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecc------c--cccCCCCCEEEECHHHH-----HHHHhhCccccCCCEEE
Confidence 9999999999988755 443332111110000 0 01112456766665533 22233334467799999
Q ss_pred Eecccc-cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecC--
Q 009675 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-- 240 (529)
Q Consensus 164 iDEaH~-~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~-- 240 (529)
|||+|. ..+ ....+..+..+....++.++++||||.+.. .+..+++ ..+.+...... ..+...+....
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v~gr~-~pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAVPGRT-YPVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEECCCCC-CCEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccccCcc-cceEEEEecCCch
Confidence 999996 222 111234556666777889999999999754 3444443 23333222211 22222222111
Q ss_pred -chhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh-----------CCCceEEecCCCCHHHHHHHHHHHh---
Q 009675 241 -LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (529)
Q Consensus 241 -~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (529)
.....+..+.+++....++++||||+++++++.+++.|.+ .++.+..+||+|++++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 1223345555666665678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCCeEEEEeCccccccccCCccEEEEeCC------------------CCCHHHHHHHHcccCCCCCCceEEEEEecc
Q 009675 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 306 --~g~~~VLVaT~a~~~GIDip~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
+|..+|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 799999999877
Q ss_pred cH
Q 009675 366 DR 367 (529)
Q Consensus 366 d~ 367 (529)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 66
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.4e-37 Score=326.01 Aligned_cols=268 Identities=14% Similarity=0.122 Sum_probs=186.6
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHH
Q 009675 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (529)
Q Consensus 48 ~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~ 123 (529)
..+.+++++++.||||+|||++|++|++. .+.++||++|+++|+.|+.+.+... ............
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~-------- 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQRE-------- 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccC--------
Confidence 34567889999999999999999999885 5788999999999999999998743 322221111000
Q ss_pred hhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc-----ccCCCCCHHHHHHHHHHHHhCCCCCEEE
Q 009675 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (529)
Q Consensus 124 ~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~-----~~~g~~fr~~y~~l~~l~~~~~~~~ii~ 198 (529)
..+...+.++|.. .+...+........+++|||||||+. ..+| .+.. +...++.++++
T Consensus 86 ---~t~~~~i~~~~~~-----~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~~-~~~~~~~~~il 148 (459)
T 2z83_A 86 ---HQGNEIVDVMCHA-----TLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIAT-KVELGEAAAIF 148 (459)
T ss_dssp -----CCCSEEEEEHH-----HHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHHH-HHHTTSCEEEE
T ss_pred ---CCCCcEEEEEchH-----HHHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHHH-HhccCCccEEE
Confidence 1112223333222 12334444445678999999999984 2222 1111 22346889999
Q ss_pred EeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHH
Q 009675 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL 278 (529)
Q Consensus 199 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L 278 (529)
||||+++.+.. ......|...... ..+ . ..+..+.+++... ++++||||++++.++.+++.|
T Consensus 149 ~SAT~~~~~~~----~~~~~~pi~~~~~-~~~--------~----~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 149 MTATPPGTTDP----FPDSNAPIHDLQD-EIP--------D----RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp ECSSCTTCCCS----SCCCSSCEEEEEC-CCC--------S----SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHH
T ss_pred EEcCCCcchhh----hccCCCCeEEecc-cCC--------c----chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHH
Confidence 99999876321 1111222221110 000 0 0111122334443 568999999999999999999
Q ss_pred HhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEE--------------------eCCCCC
Q 009675 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPKS 338 (529)
Q Consensus 279 ~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~--------------------~~~p~s 338 (529)
++.|+.+..+||+ +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999995 6788999999999999999999999999999 99999 679999
Q ss_pred HHHHHHHHcccCCCCC-CceEEEEEecc
Q 009675 339 MEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (529)
Q Consensus 339 ~~~y~Q~~GRagR~G~-~g~~i~~~~~~ 365 (529)
.++|+||+|||||.|. +|.|++|+...
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.2e-37 Score=331.44 Aligned_cols=277 Identities=22% Similarity=0.205 Sum_probs=201.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCccHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (529)
.+++.|+++++.+.++++++++||||+|||++|.+|++..+.++||++|+++|+.|..+.+.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 466777777777778899999999999999999999999888999999999999999988865 5655544443322
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCE
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~i 196 (529)
.....+++++||+.+.. ........+++|||||||++.. +|+..+..+.......+...+
T Consensus 294 ----------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 294 ----------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp ----------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEE
T ss_pred ----------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceE
Confidence 12346787777775411 1223455699999999998643 255444444333322223347
Q ss_pred EEEeecCChhHHHHHHHHhccCCCeEEe--ccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHH
Q 009675 197 LALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 274 (529)
Q Consensus 197 i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l 274 (529)
+++|||+++.+ ....+.... ...... +.. ...... ++...++++||||+|++.++.+
T Consensus 354 il~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~----~~~~~~--------l~~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSV--------TVPHPNIEEVALSNTGE-IPF----YGKAIP--------IEAIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCC--------CCCCTTEEEEECBSCSS-EEE----TTEEEC--------GGGSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCccc--------ccCCcceEEEeecccch-hHH----HHhhhh--------hhhccCCcEEEEeCCHHHHHHH
Confidence 88899998742 112222111 111111 100 000000 2233567899999999999999
Q ss_pred HHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEE----------EeC----------
Q 009675 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN---------- 334 (529)
Q Consensus 275 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI----------~~~---------- 334 (529)
++.|++.|+.+..+||+|++++ |.++..+|||||+++++|||+| |++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 4566779999999999999996 99999 566
Q ss_pred -CCCCHHHHHHHHcccCCCCCCceEEEEEecccHH
Q 009675 335 -IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (529)
Q Consensus 335 -~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~ 368 (529)
.|.|.++|+||+||+|| |++|. +.|+++.|..
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999887654
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.3e-36 Score=314.65 Aligned_cols=266 Identities=16% Similarity=0.120 Sum_probs=182.8
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcC
Q 009675 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (529)
+|++++++||||+|||++|++|++ ..+.+++|++||++|+.|+.+.+. +.......+... .. .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~---------~~--~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ---------SE--R 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc---------cc--C
Confidence 478999999999999999988887 357799999999999999988886 444443332211 01 1
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
.+...+.+.|... +...+........+++|||||||++..+ +......+..+. ..++.++++||||+++.+
T Consensus 68 ~~~~~~~~~~~~~-----l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHST-----FTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHH-----HHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHH-----HHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 1122232222221 2233444444678999999999997322 222223333322 245789999999998752
Q ss_pred HHHHHHHhccCCCeEEeccCCCCccE-EEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceE
Q 009675 208 QKDVMESLCLQNPLVLKSSFNRPNLF-YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (529)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~r~nl~-~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~ 286 (529)
.. +... ++.+. ....... ..+..+.++++.. ++++||||++++.++.+++.|++.|+.+.
T Consensus 139 ~~-----~~~~----------~~~i~~~~~~~~~---~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 139 EA-----FPPS----------NSPIIDEETRIPD---KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp CS-----SCCC----------SSCCEEEECCCCS---SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hh-----hcCC----------CCceeeccccCCH---HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 11 1000 11111 1001110 1112233445554 45799999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccE-----------------EEEeCCCCCHHHHHHHHccc
Q 009675 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRA 349 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~-----------------VI~~~~p~s~~~y~Q~~GRa 349 (529)
.+||+ +|.++++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 578899999999999999999999999999 544 68889999999999999999
Q ss_pred CCCCCCceEEEEEe
Q 009675 350 GRDQLPSKSLLYYG 363 (529)
Q Consensus 350 gR~G~~g~~i~~~~ 363 (529)
||.|..+.|+++|.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99996555555554
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.5e-35 Score=320.66 Aligned_cols=305 Identities=18% Similarity=0.178 Sum_probs=195.3
Q ss_pred CCcHHHHHHHHHHHc----C-CCEEEEcCCCchHHHHHHHHHhc------------CCCeEEEeCcHHHHHHHHH-HHHH
Q 009675 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIALMENQV-IGLK 99 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~----g-~dvlv~apTGsGKTl~~~lp~l~------------~~~~~lVi~P~~~L~~q~~-~~l~ 99 (529)
.+||+|.++++.++. | +++++++|||+|||++++..+.. ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 56899999999999986544321 4578999999999999999 7888
Q ss_pred HcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHH
Q 009675 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (529)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~ 179 (529)
.++.....+.... .....+++++||+.+........+........+++|||||||++...+.
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~---- 319 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN---- 319 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch----
Confidence 8776655444211 1234789999988775532111112233345689999999999876431
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeEE------eccCCCCccEEEEEec--------------
Q 009675 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSSFNRPNLFYEVRYK-------------- 239 (529)
Q Consensus 180 ~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~------~~~~~r~nl~~~v~~~-------------- 239 (529)
..+..+...+++.++++||||+......+....++... ..+ ...+..|.....+...
T Consensus 320 --~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 --SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred --HHHHHHHHhCCcceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 33455667788889999999998765555454443210 000 0011111111111100
Q ss_pred -------------Cch----------hhHHHHHHHHHHh-cCCceEEEEeCCcccHHHHHHHHHhCCCc--------eEE
Q 009675 240 -------------DLL----------DDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGIS--------CAA 287 (529)
Q Consensus 240 -------------~~~----------~~~~~~l~~~l~~-~~~~~~IIf~~s~~~~e~l~~~L~~~g~~--------~~~ 287 (529)
... ......+.++++. ...+++||||++++.|+.+++.|.+.+.. +..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 0112234444444 34578999999999999999999875432 678
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCe---EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC--CceEEEEE
Q 009675 288 YHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYY 362 (529)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~---VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~--~g~~i~~~ 362 (529)
+||+++ ++|.+++++|++|+.+ |||+|+++++|||+|++++||+++.|.|+..|+|++||+||.|. .+..++++
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 899875 4799999999998766 88899999999999999999999999999999999999999875 34444444
Q ss_pred ec
Q 009675 363 GM 364 (529)
Q Consensus 363 ~~ 364 (529)
+.
T Consensus 556 D~ 557 (590)
T 3h1t_A 556 DY 557 (590)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 52
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=8e-34 Score=311.26 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=203.7
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCC
Q 009675 49 AVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (529)
Q Consensus 49 ~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (529)
..++|++++++||||+|||+ .++..+...+..+|++|+++|+.|+++.+++.|+++..+.++... -.....
T Consensus 151 r~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~TpG 221 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPNG 221 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTTC
T ss_pred HhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCCC
Confidence 44678999999999999998 444455445667999999999999999999999988877765432 000111
Q ss_pred CcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChh
Q 009675 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPK 206 (529)
Q Consensus 129 ~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~--~~~ii~lSAT~~~~ 206 (529)
...+++.+|+|.+.. ...++++||||||++.+.+ |...+. .+....+ .++++++|||. .
T Consensus 222 r~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~---~~l~~l~~~~i~il~~SAT~--~ 282 (677)
T 3rc3_A 222 KQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWT---RALLGLCAEEVHLCGEPAAI--D 282 (677)
T ss_dssp CCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHH---HHHHHCCEEEEEEEECGGGH--H
T ss_pred cccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHH---HHHHccCccceEEEeccchH--H
Confidence 125667777665431 2457999999999997755 444333 2333333 57788888883 3
Q ss_pred HHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceE
Q 009675 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (529)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~ 286 (529)
....+....+ ....+.. +.+..-. .+.... + ..+.... ...||||+|+++++.+++.|.+.|+.+.
T Consensus 283 ~i~~l~~~~~--~~~~v~~-~~r~~~l-~~~~~~-----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~ 348 (677)
T 3rc3_A 283 LVMELMYTTG--EEVEVRD-YKRLTPI-SVLDHA-----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESA 348 (677)
T ss_dssp HHHHHHHHHT--CCEEEEE-CCCSSCE-EECSSC-----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcC--CceEEEE-eeecchH-HHHHHH-----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCee
Confidence 3333443332 2222221 1221111 111100 0 0112222 2358999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhc--CCCeEEEEeCccccccccCCccEEEEeCC--------------CCCHHHHHHHHcccC
Q 009675 287 AYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRAG 350 (529)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GIDip~v~~VI~~~~--------------p~s~~~y~Q~~GRag 350 (529)
.+||+|++++|.++++.|++ |+++|||||+++++|||+ +|++||++++ |.|..+|+||+||||
T Consensus 349 ~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 349 VIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAG 427 (677)
T ss_dssp EECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBT
T ss_pred eeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCC
Confidence 99999999999999999999 889999999999999999 9999999999 779999999999999
Q ss_pred CCCCC---ceEEEEEecccHHHHHHHHHhccc
Q 009675 351 RDQLP---SKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 351 R~G~~---g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
|.|.. |.|+.+ ...+...++.++.....
T Consensus 428 R~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 428 RFSSRFKEGEVTTM-NHEDLSLLKEILKRPVD 458 (677)
T ss_dssp CTTSSCSSEEEEES-STTHHHHHHHHHHSCCC
T ss_pred CCCCCCCCEEEEEE-ecchHHHHHHHHhcCcc
Confidence 99964 555544 44566667777766544
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5e-34 Score=326.97 Aligned_cols=315 Identities=17% Similarity=0.184 Sum_probs=226.3
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEeCcHHHHHHHHHHHH-HHcCCceeEec
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~---~--~~~~lVi~P~~~L~~q~~~~l-~~~gi~~~~~~ 109 (529)
+|+|+|.+++..++.. ..+++.++||+|||+++...+.. . .+++|||+|+ +|+.||...+ +.++++...+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6999999999998874 47889999999999987655532 2 3489999999 9999999999 45777776664
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccCh-hhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~-~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~ 188 (529)
+..... ............+++++|++.+... .....+. ...+++|||||||++..++....+.|..+..+.
T Consensus 232 ~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 432211 1111112223468999998877543 2222222 336899999999999877655555566776665
Q ss_pred HhCCCCCEEEEeecCChhHHHHHHHHhccCCC------------------------------------------------
Q 009675 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNP------------------------------------------------ 220 (529)
Q Consensus 189 ~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~------------------------------------------------ 220 (529)
.. ...+++||||+.+....++...+.+..|
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 43 3458999999864211111111100000
Q ss_pred ----------------------------------eEEec------cCCCCcc-EEEEE----------------------
Q 009675 221 ----------------------------------LVLKS------SFNRPNL-FYEVR---------------------- 237 (529)
Q Consensus 221 ----------------------------------~~~~~------~~~r~nl-~~~v~---------------------- 237 (529)
..+.. .+..... .+.+.
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 00000 0000000 00000
Q ss_pred ---------------------ecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHh-CCCceEEecCCCCHH
Q 009675 238 ---------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDK 295 (529)
Q Consensus 238 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~-~g~~~~~~h~~l~~~ 295 (529)
.......+...+.++++...+.++||||++++.++.+++.|.+ .|+.+..+||+|+++
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 0011134677888888887888999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEe
Q 009675 296 ARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (529)
Q Consensus 296 ~R~~~~~~f~~g~--~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~ 363 (529)
+|..+++.|++|+ ++|||||+++++|||+|++++||+|++|.++..|+|++||+||.|+.+.+++++.
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999998 9999999999999999999999999999999999999999999999987766644
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.4e-32 Score=292.45 Aligned_cols=334 Identities=18% Similarity=0.197 Sum_probs=239.1
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH---
Q 009675 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (529)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~--- 100 (529)
.++.++.+|.. +++.|.-..-.+..|+ +..|.||.|||+++.+|++. .+..+.||+|+..|+.+..+.+..
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 45667788986 8899999998998888 99999999999999999974 377899999999999998888766
Q ss_pred -cCCceeEeccC--------------------------------------------------ccHHHHHHHHHHhhcCCC
Q 009675 101 -KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKP 129 (529)
Q Consensus 101 -~gi~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~ 129 (529)
+|+.+..+.+. .....+...+.
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~------- 214 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL------- 214 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH-------
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc-------
Confidence 68888877762 11122222222
Q ss_pred cccEEEeCcccccChhhHHHHH---hhhccCCccEEEEecccccc-----------cCCCCCHHHHHH------------
Q 009675 130 SLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCIS-----------SWGHDFRPSYRK------------ 183 (529)
Q Consensus 130 ~~~ll~~tpe~v~t~~~~~~l~---~~~~~~~l~~iViDEaH~~~-----------~~g~~fr~~y~~------------ 183 (529)
.+|.|+|.--++-.-+...|. ....++.+.+.||||+|.++ .-+.+-...|..
T Consensus 215 -~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 215 -CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp -SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred -CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 578888765443332222221 11224568899999999873 000000011111
Q ss_pred -----------------------------------------HHH-HHHh--C------------------------CC--
Q 009675 184 -----------------------------------------LSS-LRNY--L------------------------PD-- 193 (529)
Q Consensus 184 -----------------------------------------l~~-l~~~--~------------------------~~-- 193 (529)
+.. ++.. + |+
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 100 1110 0 00
Q ss_pred ------------------------------------CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEE-
Q 009675 194 ------------------------------------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV- 236 (529)
Q Consensus 194 ------------------------------------~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v- 236 (529)
..+.+||||+.... ..+.+..++. ++..+.++|......
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecC
Confidence 12899999998754 5566666543 444466666554432
Q ss_pred --EecCchhhHHHHHHHHHHhc--CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 009675 237 --RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (529)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (529)
.+. ...+++..+.+.+... .+.++||||+|++.++.+++.|.+.|+++..+||+..+.++..+...+..| .|+
T Consensus 450 d~vy~-t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~Vt 526 (822)
T 3jux_A 450 DLVFR-TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVT 526 (822)
T ss_dssp CEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEE
T ss_pred cEEEe-cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEE
Confidence 222 3356788888877652 567899999999999999999999999999999997666666666666666 699
Q ss_pred EEeCccccccccC--------CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccH-------HHHHHHHHhc
Q 009675 313 VATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-------RRMEFILSKN 377 (529)
Q Consensus 313 VaT~a~~~GIDip--------~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~-------~~~~~i~~~~ 377 (529)
|||+++|||+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.+++|++.+|. +++..+++..
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHS
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHc
Confidence 9999999999998 556999999999999999999999999999999999999883 3455555554
Q ss_pred c
Q 009675 378 Q 378 (529)
Q Consensus 378 ~ 378 (529)
+
T Consensus 607 ~ 607 (822)
T 3jux_A 607 K 607 (822)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=9.9e-32 Score=288.30 Aligned_cols=298 Identities=14% Similarity=0.131 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEeCcHHHHHHHHHHHHHHcC--Ccee
Q 009675 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAGE 106 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~lp~l~-----~~~~~lVi~P~~~L~~q~~~~l~~~g--i~~~ 106 (529)
+|+|+|.++++.+. .++++++.++||+|||++++..+.. ..+++|||+| .+|+.||.++++++. ....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 69999999998773 5789999999999999886533321 2468999999 579999999999864 3444
Q ss_pred EeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHH
Q 009675 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (529)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~ 186 (529)
.+.+.... ......+++++|++.+..... .....+++||+||||++...+. ....
T Consensus 116 ~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-------~~~~ 170 (500)
T 1z63_A 116 VFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-------KIFK 170 (500)
T ss_dssp ECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS-------HHHH
T ss_pred EEecCchh-----------ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH-------HHHH
Confidence 44333210 111246788888887765432 2233589999999999976442 2333
Q ss_pred HHHhCCCCCEEEEeecCChhHHHHHHHHhccC----------------------------------CCeEEecc------
Q 009675 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSS------ 226 (529)
Q Consensus 187 l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~------ 226 (529)
....++...+++||||+..+...++...+.+- .+.+++..
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAI 250 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHH
T ss_pred HHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccch
Confidence 44455666789999999766555444332211 12222211
Q ss_pred -CCCCccEEEEEecCc--------------------------------------------------------hhhHHHHH
Q 009675 227 -FNRPNLFYEVRYKDL--------------------------------------------------------LDDAYADL 249 (529)
Q Consensus 227 -~~r~nl~~~v~~~~~--------------------------------------------------------~~~~~~~l 249 (529)
...|.........+. ...++..+
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l 330 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 330 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHH
Confidence 112222222211110 01233344
Q ss_pred HHHHHh--cCCceEEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCe-EEEEeCcccccccc
Q 009675 250 CSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDR 324 (529)
Q Consensus 250 ~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a~~~GIDi 324 (529)
.++++. ..+.++||||+++..++.+++.|... |+.+..+||+++.++|.+++++|++| +.+ +|++|.++++|+|+
T Consensus 331 ~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl 410 (500)
T 1z63_A 331 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 410 (500)
T ss_dssp HHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCC
T ss_pred HHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCch
Confidence 445543 25678999999999999999999885 99999999999999999999999988 555 79999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 009675 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (529)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~ 361 (529)
+++++||++++|+++..|.|++||++|.|+...+.+|
T Consensus 411 ~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 411 TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp TTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 9999999999999999999999999999988776544
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4e-29 Score=275.41 Aligned_cols=310 Identities=13% Similarity=0.135 Sum_probs=205.9
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHHhc---C-------CCeEEEeCcHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPALA---K-------PGIVLVVSPLIALMENQVIGL 98 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l---------~g~dvlv~apTGsGKTl~~~lp~l~---~-------~~~~lVi~P~~~L~~q~~~~l 98 (529)
.+||+|.+++..+. .++.+++..+||+|||+..+..+.. . .+++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999875 3467899999999999876543321 1 2468999997 8999999999
Q ss_pred HHcC---CceeEeccCccHHHHHHHHHHhhcC--CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC
Q 009675 99 KEKG---IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 99 ~~~g---i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~ 173 (529)
.++. +....+.++................ ....+++++|++.+. ..........+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~------~~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFR------LHAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHH------HHTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHH------hhHHHhhcCCccEEEEECceecCCh
Confidence 8852 3344444433322222222222111 123567777766542 2222333456899999999999753
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhcc------------------------------------
Q 009675 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------------------------------------ 217 (529)
Q Consensus 174 g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~------------------------------------ 217 (529)
. .+.......++....++||||+-.+...++...+..
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 222223334456678999999865432211111100
Q ss_pred ----------CCCeEEecc-----CCCCccEEEEEecC------------------------------------------
Q 009675 218 ----------QNPLVLKSS-----FNRPNLFYEVRYKD------------------------------------------ 240 (529)
Q Consensus 218 ----------~~~~~~~~~-----~~r~nl~~~v~~~~------------------------------------------ 240 (529)
-.+.+++.. ...|.....+....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 000111000 00111111111000
Q ss_pred -----------------------------------chhhH---HHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCC
Q 009675 241 -----------------------------------LLDDA---YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (529)
Q Consensus 241 -----------------------------------~~~~~---~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g 282 (529)
....+ +..+++.++..++.++||||+++..++.+...|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 00112 2223333333457799999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCe---EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEE
Q 009675 283 ISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (529)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~---VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i 359 (529)
+.+..+||+++.++|.+++++|++|... +|++|.++++|||++++++||+||+|+++..|.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 9999999999999999999999998654 8999999999999999999999999999999999999999999887665
Q ss_pred EE
Q 009675 360 LY 361 (529)
Q Consensus 360 ~~ 361 (529)
+|
T Consensus 521 v~ 522 (644)
T 1z3i_X 521 IY 522 (644)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-29 Score=280.35 Aligned_cols=315 Identities=19% Similarity=0.183 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEeCcHHHHHHHHHHHHHHcC--Cc
Q 009675 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKG--IA 104 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l----~g~dvlv~apTGsGKTl~~~lp~l------~~~~~~lVi~P~~~L~~q~~~~l~~~g--i~ 104 (529)
.++||+|.+++..++ .++++++..+||.|||+..+..+. ...+.+|||+| .+|+.||.+.+.+.. ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998776 788999999999999987654332 23678999999 788999999999864 44
Q ss_pred eeEeccCccHHHHHHHHHHhh------cCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCH
Q 009675 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (529)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr 178 (529)
+..+.+............... ......+++++|++.+... ........+++|||||||++...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~------~~~l~~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD------RAELGSIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT------HHHHHTSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh------HHHHhcCCcceeehhhhhhhcCch----
Confidence 444444333222211111000 1223567888888876432 112223358999999999996543
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCC-------------------------------eEEecc-
Q 009675 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP-------------------------------LVLKSS- 226 (529)
Q Consensus 179 ~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~-------------------------------~~~~~~- 226 (529)
..+......++....++||||+-.+...++...+..-.| .+++..
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 233334455555668999999965544444443332111 111100
Q ss_pred ----CCCCccEEEEEecCc-------------------------------------------------------------
Q 009675 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (529)
Q Consensus 227 ----~~r~nl~~~v~~~~~------------------------------------------------------------- 241 (529)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 001111111111000
Q ss_pred -------------hhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 009675 242 -------------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (529)
Q Consensus 242 -------------~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (529)
...++..|.+++.. ..+.++||||..+..++.|...|...|+.+..+||+++.++|.++++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01233344445543 246789999999999999999999999999999999999999999999998
Q ss_pred CCC---eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE--Eecc
Q 009675 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (529)
Q Consensus 307 g~~---~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~--~~~~ 365 (529)
+.. .+|++|.+++.|||++.+++||+||.|+++..+.|++||++|.|+...+.+| +..+
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 654 4999999999999999999999999999999999999999999987766554 4444
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=5.1e-28 Score=266.65 Aligned_cols=201 Identities=21% Similarity=0.278 Sum_probs=151.8
Q ss_pred cEEEEeccccc-ccCCCCCHHHHHHHHHHHHhC-------------------CCCCEEEEeecCChhHHHHHHHHhccCC
Q 009675 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (529)
Q Consensus 160 ~~iViDEaH~~-~~~g~~fr~~y~~l~~l~~~~-------------------~~~~ii~lSAT~~~~~~~~i~~~l~~~~ 219 (529)
.+|||||+|++ .+|++.++..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~---- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH----S---- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH----C----
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh----h----
Confidence 47899999986 457666666665555444320 1457899999998764221 0
Q ss_pred CeEEec-----cCCCCccEEEEEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCC
Q 009675 220 PLVLKS-----SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (529)
Q Consensus 220 ~~~~~~-----~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l 292 (529)
...... ....|. ..+.... .....+...+.. ..+.++||||+|+..++.+++.|.+.|+.+..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~~---~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPTE---NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECST---THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEeccc---chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 011111 112222 2222221 233444444432 2456899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC-----CCCHHHHHHHHcccCCCCCCceEEEEEecccH
Q 009675 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (529)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~-----p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~ 367 (529)
++.+|.++++.|++|+++|||||+++++|+|+|+|++||+++. |.|.++|+||+|||||.| +|.+++|++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999997 899999999999999996 7999999998877
Q ss_pred HHHHHHH
Q 009675 368 RRMEFIL 374 (529)
Q Consensus 368 ~~~~~i~ 374 (529)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655553
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=6.6e-27 Score=226.80 Aligned_cols=192 Identities=19% Similarity=0.237 Sum_probs=150.0
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeEE
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVL 82 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~-----------~~~~~l 82 (529)
...|.++++++.+.+.|++ +|+.+|+|+|.++++.+++|+|+++.||||+|||++|++|++. .++++|
T Consensus 28 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 3456778999999999998 7999999999999999999999999999999999999999984 267899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccC
Q 009675 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRG 157 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~ 157 (529)
|++|+++|+.|+.+.++++ ++....+.++........... . ..+++++||+.+. ..+. ......
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~-----~~l~~~~~~~~ 175 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLI-----DFLECGKTNLR 175 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHH-----HHHHHTSCCCT
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHH-----HHHHcCCCCcc
Confidence 9999999999998888774 777777777766654433222 2 2577777776542 1221 233456
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEEe
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (529)
.++++||||||++.+|| |++.+..+ .+.+ ++.|+++||||+++.+.+.+...+ .+|..+.
T Consensus 176 ~~~~lViDEah~l~~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMG--FEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp TCCEEEETTHHHHHHTT--CHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred cccEEEEeCHHHHhhhC--cHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 78999999999999988 78776655 3444 578999999999999888666655 3555443
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=6.9e-27 Score=266.52 Aligned_cols=311 Identities=12% Similarity=0.082 Sum_probs=197.8
Q ss_pred hHHHHHHHHHhc------CCCCCcHHHHHHHHHHHc--------------CCCEEEEcCCCchHHHHHHHHHhc--C---
Q 009675 23 KEALVKLLRWHF------GHAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA--K--- 77 (529)
Q Consensus 23 ~~~~~~~l~~~f------g~~~~r~~Q~~~i~~~l~--------------g~dvlv~apTGsGKTl~~~lp~l~--~--- 77 (529)
.+.+++.+..+. +...|||+|.+|++.++. +++++++++||||||+++ ++++. .
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~ 328 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD 328 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC
Confidence 345666666532 123599999999999875 378999999999999987 33332 1
Q ss_pred -CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh---h
Q 009675 78 -PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---I 153 (529)
Q Consensus 78 -~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~---~ 153 (529)
..++|||+|+++|+.|+.+.+..++... +..+.+... ....+... ..+++++||..+.. .+.. .
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~---l~~~L~~~--~~~IiVtTiqkl~~-----~l~~~~~~ 396 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAG---LKRNLDKD--DNKIIVTTIQKLNN-----LMKAESDL 396 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHH---HHHHHHCS--SCCEEEEEHHHHHH-----HHHHCCCC
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHH---HHHHhcCC--CCCEEEEEHHHHHH-----HHhcccch
Confidence 3589999999999999999999875432 112222211 12223222 35677666664422 1111 1
Q ss_pred hccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHH----HHHHHHhcc------------
Q 009675 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCL------------ 217 (529)
Q Consensus 154 ~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~----~~i~~~l~~------------ 217 (529)
...+...+||+||||+... | .....++..+|+.++++||||+..... ......++-
T Consensus 397 ~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~ 468 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIR 468 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHH
T ss_pred hccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHh
Confidence 1234578999999999642 2 123456788999999999999975321 111222211
Q ss_pred ---CCCeEEeccCCCCccEE-----E------EEe--cCchhhHHHHHHHH----HHhc--------CCceEEEEeCCcc
Q 009675 218 ---QNPLVLKSSFNRPNLFY-----E------VRY--KDLLDDAYADLCSV----LKAN--------GDTCAIVYCLERT 269 (529)
Q Consensus 218 ---~~~~~~~~~~~r~nl~~-----~------v~~--~~~~~~~~~~l~~~----l~~~--------~~~~~IIf~~s~~ 269 (529)
..|..+......+.+.. . ... .-....++..+.+. .... .+.++||||+|+.
T Consensus 469 dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~ 548 (1038)
T 2w00_A 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVD 548 (1038)
T ss_dssp HTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHH
T ss_pred CCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHH
Confidence 11111100000000000 0 000 00011223333322 2211 2457999999999
Q ss_pred cHHHHHHHHHhCC------------Cce-EEecCC----------C----------CH----------------------
Q 009675 270 TCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND---------------------- 294 (529)
Q Consensus 270 ~~e~l~~~L~~~g------------~~~-~~~h~~----------l----------~~---------------------- 294 (529)
.|..+++.|.+.+ +.+ ..+|++ + ++
T Consensus 549 ~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~ 628 (1038)
T 2w00_A 549 AAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFS 628 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccc
Confidence 9999999998754 454 556653 2 22
Q ss_pred -------HHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC
Q 009675 295 -------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (529)
Q Consensus 295 -------~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~ 355 (529)
..|..++++|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 629 ~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 629 TDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred ccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 788999999999999999999998753
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=6.7e-27 Score=224.51 Aligned_cols=185 Identities=21% Similarity=0.290 Sum_probs=138.7
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------------CCCeEEEeCcH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPL 87 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------------~~~~~lVi~P~ 87 (529)
+++++++.+.|.+ +|+.+|+|+|.++++.+++|+|+++.||||+|||++|++|++. .++++||++|+
T Consensus 25 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 5788999999998 6999999999999999999999999999999999999999875 46789999999
Q ss_pred HHHHHHHHHHHHHc---CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009675 88 IALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (529)
Q Consensus 88 ~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (529)
++|+.|+.+.++.+ ++....+.++........ .+.. ..+++++||+.+.. .+. .......++++|
T Consensus 104 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~-----~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 104 RELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DISK---GVDIIIATPGRLND-----LQMNNSVNLRSITYLV 172 (228)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHHS---CCSEEEECHHHHHH-----HHHTTCCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---HhcC---CCCEEEECHHHHHH-----HHHcCCcCcccceEEE
Confidence 99999999999985 555665555544332221 2222 26777777765422 111 223456789999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHHhccCCCeE
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV 222 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (529)
|||||++.+|| |++.+..+ +....++.+++++|||+++.+.+.+...+ .+|..
T Consensus 173 iDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 225 (228)
T 3iuy_A 173 IDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALSYL--KDPMI 225 (228)
T ss_dssp ECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEE
T ss_pred EECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHHHC--CCCEE
Confidence 99999999987 78777665 23333578999999999999887555443 45543
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.3e-26 Score=210.87 Aligned_cols=152 Identities=21% Similarity=0.367 Sum_probs=137.6
Q ss_pred cCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHh
Q 009675 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (529)
Q Consensus 226 ~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (529)
+...+++...+.... ..+++..|.++++...+.++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 445667766666544 3568888999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcc
Q 009675 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (529)
Q Consensus 306 ~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~ 378 (529)
+|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|++|.+++|+.+.|...++.+.+..+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888876554
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=4.3e-26 Score=251.22 Aligned_cols=203 Identities=20% Similarity=0.265 Sum_probs=147.0
Q ss_pred cEEEEeccccccc-CCCCCHHHHHHHHHHHHh---C----------------CCCCEEEEeecCChhHHHHHHHHhccCC
Q 009675 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNY---L----------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (529)
Q Consensus 160 ~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~---~----------------~~~~ii~lSAT~~~~~~~~i~~~l~~~~ 219 (529)
.++||||+|++.+ |++.++.....+..+... + ...+++++|||+++..... . ..
T Consensus 333 ~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~-~~ 406 (661)
T 2d7d_A 333 FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEH-----T-DE 406 (661)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHHHHH-----C-SS
T ss_pred cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhHHHh-----h-hC
Confidence 3799999999652 333222222222222111 0 2467899999998754321 0 11
Q ss_pred CeEEe---ccCCCCccEEEEEecCchhhHHHHHHHHHHh--cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCH
Q 009675 220 PLVLK---SSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (529)
Q Consensus 220 ~~~~~---~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~ 294 (529)
..... .....|. +.+... ......+...++. ..+.++||||+|+..++.+++.|.+.|+.+..+||++++
T Consensus 407 ~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~ 481 (661)
T 2d7d_A 407 MVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKT 481 (661)
T ss_dssp CEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCH
T ss_pred eeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCH
Confidence 11110 1112222 223222 2233444444433 245689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCC-----CCCHHHHHHHHcccCCCCCCceEEEEEecccHHH
Q 009675 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (529)
Q Consensus 295 ~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~-----p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~ 369 (529)
.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.|.++|+||+||+||. .+|.|++|+++.+...
T Consensus 482 ~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999999999999997 99999999999999998 6899999999887766
Q ss_pred HHHHH
Q 009675 370 MEFIL 374 (529)
Q Consensus 370 ~~~i~ 374 (529)
.+.+.
T Consensus 561 ~~~i~ 565 (661)
T 2d7d_A 561 EIAIN 565 (661)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.5e-26 Score=210.56 Aligned_cols=150 Identities=21% Similarity=0.338 Sum_probs=133.7
Q ss_pred CccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 230 ~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
+++...+...+....++..|.++++..+++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 46666666655555688999999988888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p------~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
+|||||+++++|+|+|++++||+|++| .+.+.|+||+||+||.|++|.+++++.+.+...+..+.+..+.
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999 9999999999999999999999999999998888888776544
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=2.2e-26 Score=219.54 Aligned_cols=198 Identities=16% Similarity=0.212 Sum_probs=146.2
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|+++++++.+.+.|++ +|+.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 357778999999999987 79999999999999999999999999999999999999999753 56899999999
Q ss_pred HHHHHHHHHHHHc--------CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-hhccCCc
Q 009675 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLL 159 (529)
Q Consensus 89 ~L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~-~~~~~~l 159 (529)
+|+.|+.+.++++ ++....+.++..... .........+++++||+.+.. .+.. ......+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~ 151 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGRIND-----FIREQALDVHTA 151 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHHHHH-----HHHTTCCCGGGC
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHHHHH-----HHHcCCCCcCcc
Confidence 9999999998875 455555555543221 111112246777777765431 1211 2234568
Q ss_pred cEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCc
Q 009675 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (529)
Q Consensus 160 ~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n 231 (529)
+++||||||++.+|| |. ..+..+...++ +.+++++|||+++++.+.+... +.+|..+....++++
T Consensus 152 ~~lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 152 HILVVDEADLMLDMG--FI---TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp CEEEECSHHHHHHTT--CH---HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred eEEEEcCchHHhhhC--hH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 999999999999988 44 44555666665 6789999999999887755554 456776665555443
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=224.78 Aligned_cols=184 Identities=24% Similarity=0.328 Sum_probs=138.8
Q ss_pred CCCCCCC--hhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeEE
Q 009675 15 QKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (529)
Q Consensus 15 ~~~~~~~--l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----------~~~~~l 82 (529)
..|.++. +++.+.+.|++ +||.+|+|+|.++++.++.|+|++++||||+|||++|++|++. .+.++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 3455555 89999999998 7999999999999999999999999999999999999999984 367899
Q ss_pred EeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhcc
Q 009675 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (529)
Q Consensus 83 Vi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~ 156 (529)
|++|+++|+.|+++.++++ ++....+.++........ .+..+ .+++++||+.+. ..+.. ....
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~Iiv~Tp~~l~-----~~~~~~~~~~~ 199 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG---INIIVATPGRLL-----DHMQNTPGFMY 199 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC---CSEEEECHHHHH-----HHHHHCTTCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC---CCEEEEcHHHHH-----HHHHccCCccc
Confidence 9999999999999999985 344555555555443322 22222 678777776542 12222 2345
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHh
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l 215 (529)
..+++|||||||++.+|| |++.+..+ .+.++ ..++++||||+++.+.+.....+
T Consensus 200 ~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp TTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred ccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 679999999999999998 77665554 44554 67899999999999887655444
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=5e-26 Score=216.17 Aligned_cols=138 Identities=27% Similarity=0.403 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q 009675 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (529)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GI 322 (529)
..++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 95 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGL 95 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCC
Confidence 57888899999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccC
Q 009675 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (529)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (529)
|+|++++||+|++|.+.+.|+||+||+||.|++|.|++++++.|...++.+.+.....
T Consensus 96 di~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 96 DIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp SCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred CCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999888887765543
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=218.30 Aligned_cols=191 Identities=21% Similarity=0.310 Sum_probs=144.5
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeEEE
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVLV 83 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----------~~~~~lV 83 (529)
...|.++++++.+.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+.++||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 4457888999999999997 7999999999999999999999999999999999999999874 2678999
Q ss_pred eCcHHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccC
Q 009675 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~ 157 (529)
++|+++|+.|+.+.+++++ +.+..+.++......... + ...+++++||+.+. ..+.. .....
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~iiv~Tp~~l~-----~~l~~~~~~~~~ 170 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I----NNINILVCTPGRLL-----QHMDETVSFHAT 170 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H----TTCSEEEECHHHHH-----HHHHHCSSCCCT
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C----CCCCEEEECHHHHH-----HHHHhcCCcccc
Confidence 9999999999999999865 555555555443322221 1 13678777776552 22222 23456
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (529)
.++++|+||||++.+|| |.+. +..+...++ +.++++||||+++.+.+ .....+.+|..+.
T Consensus 171 ~~~~lViDEah~~~~~~--~~~~---~~~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMG--FADT---MNAVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVW 231 (236)
T ss_dssp TCCEEEETTHHHHHHTT--THHH---HHHHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEE
T ss_pred cccEEEEeChHHHhcCC--cHHH---HHHHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEE
Confidence 78999999999999988 5544 445556665 67899999999998876 3334456666553
No 69
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=5.7e-26 Score=214.23 Aligned_cols=189 Identities=22% Similarity=0.225 Sum_probs=145.5
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|+++++++++.+.|++ +|+.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 457889999999999997 79999999999999999999999999999999999999998853 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
+|+.|+.+.++++ ++......++........ .+ ....+++++||+.+. ..+. .......++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l~-----~~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRIL-----DLIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHH-----HHHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHHH-----HHHHcCCcCcccCCEE
Confidence 9999999999875 455666666655443221 11 224678888877542 1222 12345678999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeE
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (529)
|+||||++.+++ |++.+ ..+...++ +.+++++|||+++.+.+.+...+ .+|..
T Consensus 151 ViDEah~~~~~~--~~~~l---~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIM---EDIILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEETHHHHTSTT--THHHH---HHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEChHHhHhhC--cHHHH---HHHHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 999999998865 66544 44555665 78999999999999888666655 34543
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=220.39 Aligned_cols=193 Identities=24% Similarity=0.306 Sum_probs=149.3
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeC
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~ 85 (529)
.....|+++++++.+.+.|++ +|+.+|+++|.++++.+++|+|+++.||||+|||++|++|++.. +.++||++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred cccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 345668889999999999987 79999999999999999999999999999999999999998753 56799999
Q ss_pred cHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh--hhccCCc
Q 009675 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (529)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~--~~~~~~l 159 (529)
|+++|+.|+.+.++++ ++....+.++......... +. ...+++++||+.+. ..+.. ......+
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~~I~v~Tp~~l~-----~~l~~~~~~~l~~~ 187 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LA---KKPHIIIATPGRLI-----DHLENTKGFNLRAL 187 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HH---TCCSEEEECHHHHH-----HHHHHSTTCCCTTC
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hc---CCCCEEEECHHHHH-----HHHHcCCCcCcccc
Confidence 9999999999998875 6777777776655433222 11 13678777777542 22222 2345678
Q ss_pred cEEEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 160 ~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
++||+||||++.+|+ |++.+..+ ...++ +.++++||||+++.+.+.+...+ .+|..+
T Consensus 188 ~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~p~~i 245 (249)
T 3ber_A 188 KYLVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKKVQKLQRAAL--KNPVKC 245 (249)
T ss_dssp CEEEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred CEEEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHHHHHHHHHHC--CCCEEE
Confidence 999999999999986 77665554 44554 78899999999999877555444 566554
No 71
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=7.1e-26 Score=206.45 Aligned_cols=148 Identities=19% Similarity=0.310 Sum_probs=128.0
Q ss_pred cEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeE
Q 009675 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (529)
Q Consensus 232 l~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (529)
+...+...+....++..|.++++..+++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 33333333333348888989998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 312 LVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
||||+++++|+|+|++++||+|++|.+...|+||+||+||.|++|.|++++.+.|...+..+.+....
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 151 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSC
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999888887765443
No 72
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1.7e-25 Score=205.44 Aligned_cols=147 Identities=17% Similarity=0.299 Sum_probs=130.2
Q ss_pred ccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCe
Q 009675 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (529)
Q Consensus 231 nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (529)
++...+...+ ..+++..|.++++..++.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 5 ~i~q~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 5 GLQQYYVKLK-DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp CCEEEEEECC-GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CeEEEEEECC-hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 3443333333 256888899999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc-cHHHHHHHHHhcc
Q 009675 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQ 378 (529)
Q Consensus 311 VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~-d~~~~~~i~~~~~ 378 (529)
|||||+++++|+|+|++++||+|++|.+++.|+||+||+||.|++|.+++|+++. +...++.+.+...
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876 4566666655443
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.4e-25 Score=212.42 Aligned_cols=192 Identities=15% Similarity=0.213 Sum_probs=145.3
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~~ 88 (529)
..|+++++++++.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 358889999999999998 79999999999999999999999999999999999999999854 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
+|+.|+.+.++++ ++.+..+.++......... +..+. .+++++||+.+.. .+. .......++++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~--~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPGRILA-----LARNKSLNLKHIKHF 162 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSC--CSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCC--CCEEEeCHHHHHH-----HHHhCCCCcccCCEE
Confidence 9999999999886 6777777777665443322 22222 5777777765421 111 12335678999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
|+||||++.++ ++|+.. +..+.+..+ +.+++++|||+++.+.+.+.. .+.+|..+
T Consensus 163 ViDEah~~~~~-~~~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~p~~i 218 (220)
T 1t6n_A 163 ILDECDKMLEQ-LDMRRD---VQEIFRMTPHEKQVMMFSATLSKEIRPVCRK--FMQDPMEI 218 (220)
T ss_dssp EEESHHHHHSS-HHHHHH---HHHHHHTSCSSSEEEEEESCCCTTTHHHHHT--TCSSCEEE
T ss_pred EEcCHHHHhcc-cCcHHH---HHHHHHhCCCcCeEEEEEeecCHHHHHHHHH--HcCCCeEE
Confidence 99999999874 225544 444455555 788999999999987764433 34555543
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=1.6e-25 Score=215.44 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=144.7
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P~ 87 (529)
...|+++++++.+.+.|++ +||.+|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3567788999999999987 79999999999999999999999999999999999999998743 4689999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccE
Q 009675 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (529)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (529)
++|+.|+.+.++++ ++.+..+.++......... + ...+++++||+.+.. .+. .....+.+++
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~Iiv~Tp~~l~~-----~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L----KKCHIAVGSPGRIKQ-----LIELDYLNPGSIRL 169 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T----TSCSEEEECHHHHHH-----HHHTTSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c----cCCCEEEECHHHHHH-----HHhcCCcccccCCE
Confidence 99999999999986 4566666666655443221 1 136777777765421 111 1223456889
Q ss_pred EEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
+||||||++.+||. |++.+.. +.+.++ +.+++++|||+++.+.+.+... +.+|..+
T Consensus 170 lViDEah~~~~~~~-~~~~~~~---i~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i 226 (230)
T 2oxc_A 170 FILDEADKLLEEGS-FQEQINW---IYSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFV 226 (230)
T ss_dssp EEESSHHHHHSTTS-SHHHHHH---HHHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEE
T ss_pred EEeCCchHhhcCcc-hHHHHHH---HHHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEE
Confidence 99999999999873 6765544 455565 6789999999998876644443 3456554
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=1.7e-25 Score=216.24 Aligned_cols=193 Identities=19% Similarity=0.254 Sum_probs=139.9
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEeCc
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~------~~~~lVi~P 86 (529)
....|+++++++.+.+.|.. +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 34568888999999999987 79999999999999999999999999999999999999999753 568999999
Q ss_pred HHHHHHHHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccE
Q 009675 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (529)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~ 161 (529)
+++|+.|+.+.++.++ +......++..... ....+..+ ..+++++||+.+. ..+. .......+++
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~--~~~Ilv~Tp~~l~-----~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAE--APHIVVGTPGRVF-----DMLNRRYLSPKWIKM 176 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHH-----HHHHTTSSCSTTCCE
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcC--CCCEEEECHHHHH-----HHHHhCCcCcccCcE
Confidence 9999999999999864 44444444332221 11222222 2567666666432 1222 1234566899
Q ss_pred EEEecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 162 iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
||+||||++.++| |+..+. .+.+.++ +.+++++|||+++.+.+.+...+ .+|..+
T Consensus 177 lViDEah~~~~~~--~~~~l~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i 232 (237)
T 3bor_A 177 FVLDEADEMLSRG--FKDQIY---EIFQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRI 232 (237)
T ss_dssp EEEESHHHHHHTT--CHHHHH---HHHHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEECCchHhhccC--cHHHHH---HHHHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEE
Confidence 9999999999887 665443 4444444 78899999999999888666655 356554
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=6.3e-24 Score=231.49 Aligned_cols=330 Identities=22% Similarity=0.218 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEeCcHHHHHHHHHHHHHH--
Q 009675 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (529)
Q Consensus 26 ~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---~~~~~lVi~P~~~L~~q~~~~l~~-- 100 (529)
+.++.++.+|+ .|++.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||+.|+.|..+.+..
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34566678899 79999999999999998 99999999999999999953 366899999999999998888776
Q ss_pred --cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-------hccC---CccEEEEeccc
Q 009675 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRG---LLNLVAIDEAH 168 (529)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-------~~~~---~l~~iViDEaH 168 (529)
+|+.+..+.++.....+...+. .+|+|+||-.++ +..+... ..++ .+.++||||||
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay~--------~DIvyGTpgrlg----fDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAYL--------ADVTYVTNSELG----FDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHHT--------SSEEEEEHHHHH----HHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HhcCCeEEEEeCCCCHHHHHHHcC--------CCEEEECchhhh----hHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 5889988888877655544331 577777665442 1222222 2355 79999999999
Q ss_pred ccc-cCCCC----------CHHHHHHHHHHHHh-----------------------------------------------
Q 009675 169 CIS-SWGHD----------FRPSYRKLSSLRNY----------------------------------------------- 190 (529)
Q Consensus 169 ~~~-~~g~~----------fr~~y~~l~~l~~~----------------------------------------------- 190 (529)
.++ +.+.. --..|..+..+...
T Consensus 213 smLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~L 292 (997)
T 2ipc_A 213 SILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGL 292 (997)
T ss_dssp HHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccc
Confidence 985 22100 00011111111100
Q ss_pred ---------------------C------------------------CC--------------------------------
Q 009675 191 ---------------------L------------------------PD-------------------------------- 193 (529)
Q Consensus 191 ---------------------~------------------------~~-------------------------------- 193 (529)
+ |+
T Consensus 293 y~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Q 372 (997)
T 2ipc_A 293 FSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQ 372 (997)
T ss_dssp HTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHH
Confidence 0 00
Q ss_pred ------CCEEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEE---EEecCchhhHHHHHHHHHHh--cCCceEE
Q 009675 194 ------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAI 262 (529)
Q Consensus 194 ------~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~I 262 (529)
..+.+||+|+..+ ...+.+..++. ++..+.++|..... ..+. ....++..+.+.+.. ..+.|+|
T Consensus 373 nyFr~Y~kLsGMTGTA~tE-~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~-t~~~K~~AIv~eI~~~~~~GqPVL 447 (997)
T 2ipc_A 373 NFFRLYEKRAGMTGTAKTE-EKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYR-TEKGKFYAVVEEIAEKYERGQPVL 447 (997)
T ss_dssp HHHTTSSEEEEEESSCGGG-HHHHHHHHCCC---EEECCCSSCCCCEEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHhChHheecCCCchHH-HHHHHHHhCCC---EEEcCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHHCCCCEE
Confidence 1278999999765 35566666664 34445667765432 2233 235667776665543 2578999
Q ss_pred EEeCCcccHHHHHHHHH---------------------------------------------------------------
Q 009675 263 VYCLERTTCDELSAYLS--------------------------------------------------------------- 279 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~--------------------------------------------------------------- 279 (529)
|+|.|.+..+.|++.|.
T Consensus 448 VgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 527 (997)
T 2ipc_A 448 VGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAW 527 (997)
T ss_dssp EECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccc
Confidence 99999999999999999
Q ss_pred -------------hCCCceEEecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccccccccCCc------------------
Q 009675 280 -------------AGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDV------------------ 327 (529)
Q Consensus 280 -------------~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GIDip~v------------------ 327 (529)
+.|++...+++.....+-+-+.+ .| .-.|-|||+++|||-||.--
T Consensus 528 ~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAq---AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~ 604 (997)
T 2ipc_A 528 EGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQ---AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDR 604 (997)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHT---TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSST
T ss_pred cccchhhhhhHHHHcCCCeeeccccchHHHHHHHHh---cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccc
Confidence 56777777777654333222222 23 24599999999999998532
Q ss_pred -c-------------------------------------------------------EEEEeCCCCCHHHHHHHHcccCC
Q 009675 328 -R-------------------------------------------------------LVCHFNIPKSMEAFYQESGRAGR 351 (529)
Q Consensus 328 -~-------------------------------------------------------~VI~~~~p~s~~~y~Q~~GRagR 351 (529)
. +||-...+.|..---|-.||+||
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGR 684 (997)
T 2ipc_A 605 YEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGR 684 (997)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSC
T ss_pred cccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhccccc
Confidence 1 89999999999999999999999
Q ss_pred CCCCceEEEEEecccHH-------HHHHHHHhcc
Q 009675 352 DQLPSKSLLYYGMDDRR-------RMEFILSKNQ 378 (529)
Q Consensus 352 ~G~~g~~i~~~~~~d~~-------~~~~i~~~~~ 378 (529)
.|.||.+.+|.+-+|.- ++..++...+
T Consensus 685 QGDPGsSrF~LSLeDdLmr~fg~~~~~~~m~~l~ 718 (997)
T 2ipc_A 685 QGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMG 718 (997)
T ss_dssp SSCCCEEEEEEESSSHHHHHSSCTTHHHHHHHTC
T ss_pred CCCCCCeEEEEECChHHHHhhchHHHHHHHHHcC
Confidence 99999999999988742 2445555544
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=2.9e-25 Score=212.26 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=140.3
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEeCcH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~------~~~~~lVi~P~ 87 (529)
...|.++++++.+.+.|+. +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3457788999999999997 7999999999999999999999999999999999999999984 35689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEE
Q 009675 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (529)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~i 162 (529)
++|+.|+.+.++++ ++....+.++........ .+ ...+++++||+.+.. .+. .......++++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~-----~~~~~~~~~~~~~~i 159 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFD-----NIQRRRFRTDKIKMF 159 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHH-----HHHhCCcchhhCcEE
Confidence 99999999999885 455555555443322211 11 126777777775421 222 22335668999
Q ss_pred EEecccccccCCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 163 ViDEaH~~~~~g~~fr~~y~~l~~l~~~~-~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
|+||||++.+|+ |+..+.. +...+ ++.++++||||+++.+.+.+...+ .+|..+
T Consensus 160 ViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i 214 (224)
T 1qde_A 160 ILDEADEMLSSG--FKEQIYQ---IFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRI 214 (224)
T ss_dssp EEETHHHHHHTT--CHHHHHH---HHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEcChhHHhhhh--hHHHHHH---HHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEE
Confidence 999999999987 6655444 44444 467899999999999877666554 455544
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=206.97 Aligned_cols=151 Identities=21% Similarity=0.373 Sum_probs=121.7
Q ss_pred CCCccEEEEEecCchhhHHHHHHHHHHhc-CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhc
Q 009675 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (529)
Q Consensus 228 ~r~nl~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (529)
..+++.+.+...+. .+++..|.++++.. ++.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++
T Consensus 16 ~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45677666665443 46788888988876 56789999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhccc
Q 009675 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (529)
Q Consensus 307 g~~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~ 379 (529)
|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|++|.|++|+++.|...++.+++....
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998777777665543
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=6.7e-25 Score=206.94 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=141.9
Q ss_pred CCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------CCCeEEEeCc
Q 009675 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (529)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~---------~~~~~lVi~P 86 (529)
.|.++++++.+.+.|++ +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36778999999999998 7999999999999999999999999999999999999999874 2567999999
Q ss_pred HHHHHHHHHHHHHHcC--CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-hhhccCCccEEE
Q 009675 87 LIALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (529)
Q Consensus 87 ~~~L~~q~~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~~~~~~~l~~iV 163 (529)
+++|+.|+.+.++++. +....+.++......... +.. ..+++++||+.+.. .+. .......++++|
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA---LLR---GADAVVATPGRALD-----YLRQGVLDLSRVEVAV 149 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH---HHH---CCSEEEECHHHHHH-----HHHHTSSCCTTCSEEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH---hhC---CCCEEEECHHHHHH-----HHHcCCcchhhceEEE
Confidence 9999999999999864 455555555543332221 111 25677777765421 222 233456789999
Q ss_pred EecccccccCCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEE
Q 009675 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (529)
Q Consensus 164 iDEaH~~~~~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (529)
+||||++.+++ |+..+.. +....+ +.+++++|||+++.+.+.+...+ .+|..+
T Consensus 150 iDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i 203 (207)
T 2gxq_A 150 LDEADEMLSMG--FEEEVEA---LLSATPPSRQTLLFSATLPSWAKRLAERYM--KNPVLI 203 (207)
T ss_dssp EESHHHHHHTT--CHHHHHH---HHHTSCTTSEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEChhHhhccc--hHHHHHH---HHHhCCccCeEEEEEEecCHHHHHHHHHHc--CCCeEE
Confidence 99999998877 6655444 444554 78899999999998776544443 456544
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=216.46 Aligned_cols=189 Identities=21% Similarity=0.227 Sum_probs=137.0
Q ss_pred CChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------CCCeEEEeCcHHHHHH
Q 009675 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALME 92 (529)
Q Consensus 20 ~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~-------~~~~~lVi~P~~~L~~ 92 (529)
+++++.+.+.|.+ +|+.+|+|+|.++++.+++|+|+++.||||+|||++|++|++. .+.++||++|+++|+.
T Consensus 34 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 34 YKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 3788999999998 6999999999999999999999999999999999999999975 3557999999999999
Q ss_pred HHHHHHHHcC----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h---hhccCCccEEEE
Q 009675 93 NQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K---IHSRGLLNLVAI 164 (529)
Q Consensus 93 q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~---~~~~~~l~~iVi 164 (529)
|+.+.+++++ +....+.++. ....... .......+++++||+.+ ..+. . ......++++||
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~I~v~Tp~~l------~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAA---VAAKKFG--PKSSKKFDILVTTPNRL------IYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHH---HHHTTTS--TTSCCCCCEEEECHHHH------HHHHHSSSCSCCCTTCCEEEE
T ss_pred HHHHHHHHHhcccCceEEEEecCc---cHHHHhh--hhhcCCCCEEEECHHHH------HHHHHhCCCCcccccCcEEEE
Confidence 9999999863 3333322211 1110001 11123467777776654 2222 2 234567899999
Q ss_pred ecccccccCC-CCCHHHHHHHHHHHHhC--CCCCEEEEeecCChhHHHHHHHHhccCCCeEEec
Q 009675 165 DEAHCISSWG-HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (529)
Q Consensus 165 DEaH~~~~~g-~~fr~~y~~l~~l~~~~--~~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (529)
||||++.+|| .+|+..+..+ ...+ ++.++++||||+++++.+.+...+ .+|..+..
T Consensus 182 DEah~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l--~~p~~i~~ 240 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASI---FLACTSHKVRRAMFSATFAYDVEQWCKLNL--DNVISVSI 240 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHH---HHHCCCTTCEEEEEESSCCHHHHHHHHHHS--SSCEEEEE
T ss_pred eChHHhcccccccHHHHHHHH---HHhcCCCCcEEEEEeccCCHHHHHHHHHhC--CCCEEEEe
Confidence 9999999987 3577666555 3332 478999999999999877555444 46665543
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=2.5e-25 Score=216.99 Aligned_cols=195 Identities=20% Similarity=0.250 Sum_probs=144.4
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------------
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------------- 77 (529)
....|.++++++.+.+.|+. +|+.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 33468888999999999987 79999999999999999999999999999999999999998742
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc----CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHh-
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~- 152 (529)
++++||++|+++|+.|+.+.++++ ++....+.++........ .+. ...+++++||+.+. ..+..
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~Ivv~Tp~~l~-----~~l~~~ 168 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ---MGCHLLVATPGRLV-----DFIEKN 168 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS---SCCSEEEECHHHHH-----HHHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC---CCCCEEEECHHHHH-----HHHHcC
Confidence 258999999999999999999885 345555555554333221 121 23678777777542 12221
Q ss_pred hhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhHHHHHHHHhccCCCeEEe
Q 009675 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (529)
Q Consensus 153 ~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~---~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (529)
......++++|+||||++.+|| |++.+..+.... ..+ +.++++||||+++.+.+.....+ .+|..+.
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~-~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEES-NMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSS-CCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhc-cCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2245668999999999999988 777666553211 233 57899999999999877655554 3555443
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=9.2e-25 Score=203.87 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=125.6
Q ss_pred CCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q 009675 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (529)
Q Consensus 229 r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (529)
.+++.+.+...+. ..++..|.++++..+ .++||||++++.++.+++.|...|+.+..+||++++++|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4566655554432 467888888888754 57999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecc-cHHHHHHHHHh
Q 009675 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (529)
Q Consensus 309 ~~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~-d~~~~~~i~~~ 376 (529)
.+|||||+++++|+|+|++++||+|++|.+++.|+||+||+||.|++|.+++|+++. +...++.+.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~ 173 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKAL 173 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976 66655555443
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=221.33 Aligned_cols=190 Identities=18% Similarity=0.235 Sum_probs=140.4
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEE
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~------~~~~lV 83 (529)
.+...|..+++++.+.+.|.. +||.+|+++|.++|+.++.| +|++++||||+|||++|++|++.. ++++||
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 345678889999999999998 79999999999999999998 999999999999999999999853 457999
Q ss_pred eCcHHHHHHHHHHHHHHcC-----CceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHH-h--hhc
Q 009675 84 VSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IHS 155 (529)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~-~--~~~ 155 (529)
++|+++|+.|+.+.++.++ +......++...... .....+++++||+ .+..+. . ...
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~IlV~TP~------~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---------QKISEQIVIGTPG------TVLDWCSKLKFID 232 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---------CCCCCSEEEECHH------HHHHHHTTTCCCC
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---------hcCCCCEEEECHH------HHHHHHHhcCCCC
Confidence 9999999999999988854 334444333221110 0123456655555 333332 1 234
Q ss_pred cCCccEEEEeccccccc-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhHHHHHHHHhccCCCeEEe
Q 009675 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~-~g~~fr~~y~~l~~l~~~~~-~~~ii~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (529)
...+++|||||||++.+ +| |+..+.. +.+.++ +.|+++||||+++.+....... +.+|..+.
T Consensus 233 l~~l~~lVlDEad~l~~~~~--~~~~~~~---i~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQG--HQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTT--HHHHHHH---HHTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccC--cHHHHHH---HHHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 56799999999999987 55 6655444 444444 6899999999999988855554 45666553
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.3e-24 Score=216.38 Aligned_cols=138 Identities=25% Similarity=0.396 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q 009675 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (529)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GI 322 (529)
.+++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 46888888888887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhcccC
Q 009675 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (529)
Q Consensus 323 Dip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~~~~ 380 (529)
|+|++++||+|++|.+.+.|+||+||+||.|++|.|++|+++.+...++.+.+....+
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999888887776543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.6e-26 Score=211.90 Aligned_cols=148 Identities=23% Similarity=0.284 Sum_probs=131.0
Q ss_pred CccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 009675 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (529)
Q Consensus 230 ~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (529)
+++.+.+...+....++..|.++++...+.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34444444443334677778888887777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHhc
Q 009675 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (529)
Q Consensus 310 ~VLVaT~a~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~~ 377 (529)
+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++++...|...+..+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 99999999999999999999999999999999999999999999999999999998887776665543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=9.7e-22 Score=212.17 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=62.8
Q ss_pred cCCCCCcHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEec
Q 009675 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~----~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (529)
.|+ ++||+|.+++.+ +..|+++++.||||+|||++|++|++..+++++|++||++|+.|+++.+..++++...+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 799999998754 457899999999999999999999999999999999999999999999998877776654
Q ss_pred c
Q 009675 110 S 110 (529)
Q Consensus 110 ~ 110 (529)
+
T Consensus 83 g 83 (540)
T 2vl7_A 83 G 83 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.82 E-value=1.3e-18 Score=188.30 Aligned_cols=316 Identities=15% Similarity=0.108 Sum_probs=195.0
Q ss_pred CCCCCcHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc----CCcee
Q 009675 35 GHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGE 106 (529)
Q Consensus 35 g~~~~r~~Q~~~i~~----~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~----gi~~~ 106 (529)
|+ ++||+|.+++.+ +..|+++++.||||+|||++|++|++..+++++|++||++|+.|..+.+..+ +++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45 599999997765 4578999999999999999999999998999999999999999999988876 55555
Q ss_pred EeccCccH---------------------------------HHHHH-H-----------HHHhhcCCCcccEEEeCcccc
Q 009675 107 FLSSTQTM---------------------------------QVKTK-I-----------YEDLDSGKPSLRLLYVTPELT 141 (529)
Q Consensus 107 ~~~~~~~~---------------------------------~~~~~-~-----------~~~~~~~~~~~~ll~~tpe~v 141 (529)
.+.+.... ..... . +...+......+++++|+..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 54431110 00000 0 000011112357887777766
Q ss_pred cChhhHHHHHhhhccCCccEEEEecccccccCCCC---------------------------------------------
Q 009675 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD--------------------------------------------- 176 (529)
Q Consensus 142 ~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~--------------------------------------------- 176 (529)
..+..... ........++||||||.+.+ ..+
T Consensus 160 ~~~~~~~~---~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 160 FIDRYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HCHHHHTT---SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred cCHHHHHh---cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 65532111 11112457899999999865 210
Q ss_pred --------CHHHHH-------------------------HHHHHHH----------------------------hCCC--
Q 009675 177 --------FRPSYR-------------------------KLSSLRN----------------------------YLPD-- 193 (529)
Q Consensus 177 --------fr~~y~-------------------------~l~~l~~----------------------------~~~~-- 193 (529)
+..... .+..+.. .+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 0000000 1112
Q ss_pred CCEEEEeecCChhHHHHHHHHhccCCCeE-------EeccCCCCccEEEEEec-C-----chhhHHHHH----HHHHHhc
Q 009675 194 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-D-----LLDDAYADL----CSVLKAN 256 (529)
Q Consensus 194 ~~ii~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~r~nl~~~v~~~-~-----~~~~~~~~l----~~~l~~~ 256 (529)
.++|++|||+++ ...+...+|+..+.. +...+ ..+....+... + ........+ .++++..
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578999999998 466788888864432 12233 33333222110 0 001223333 3344433
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEe--CccccccccC-----CccE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 329 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT--~a~~~GIDip-----~v~~ 329 (529)
++.++||++|....+.+++. .+..+..-..+++ +.+.++.|+.+.--||+|| ..+.+|||+| ..+.
T Consensus 393 -~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 -KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp -SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred -CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 44799999999999998873 3444443333455 3456777754444799998 5999999999 3799
Q ss_pred EEEeCCCC---------------------CH---------HHHHHHHcccCCCCCCceEEEEEecc
Q 009675 330 VCHFNIPK---------------------SM---------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 330 VI~~~~p~---------------------s~---------~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
||..++|- .. ....|.+||+=|....--++++.+..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 99999874 11 11248889999986655555555533
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=168.59 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=98.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEeCcHHHHHHH-HHHHHHHc--
Q 009675 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~---------~~~~lVi~P~~~L~~q-~~~~l~~~-- 101 (529)
.+..+|+|+|.++++.+++++++++.+|||+|||++++++++.. ++++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45557999999999999999999999999999999999988742 6789999999999999 55666664
Q ss_pred -CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhh-------hccCCccEEEEecccccccC
Q 009675 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRGLLNLVAIDEAHCISSW 173 (529)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~-------~~~~~l~~iViDEaH~~~~~ 173 (529)
++.+..+.+......... .+.. ..+++++||+.+.. .+... .....+++|||||||++...
T Consensus 109 ~~~~v~~~~g~~~~~~~~~---~~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFP---EVVK---SCDIIISTAQILEN-----SLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp TTSCEEECCC---CCCCHH---HHHH---HCSEEEEEHHHHHH-----HHHC-------CCCGGGCSEEEETTC------
T ss_pred cCceEEEEeCCcccchhHH---hhcc---CCCEEEECHHHHHH-----HHhccCcccccccchhcccEEEEECchhhccC
Confidence 445555544332111100 0111 26777777775422 22211 23456899999999999754
Q ss_pred CCCCHHHHHHHHHHH--Hh---------CCCCCEEEEeec
Q 009675 174 GHDFRPSYRKLSSLR--NY---------LPDVPILALTAT 202 (529)
Q Consensus 174 g~~fr~~y~~l~~l~--~~---------~~~~~ii~lSAT 202 (529)
+ .++..+..+...+ .. .+..++++||||
T Consensus 178 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 178 A-VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred C-cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 2333222221111 10 167889999998
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=4.1e-18 Score=167.37 Aligned_cols=123 Identities=11% Similarity=0.130 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEeCCcccHHHHHHHHHhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCe-EEEEeCc
Q 009675 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (529)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IIf~~s~~~~e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a 317 (529)
..++..|.++++.. .+.++||||+++..++.+...|... |+.+..+||+++.++|.++++.|++| +++ +|++|.+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 35677777777654 6778999999999999999999885 99999999999999999999999998 777 7899999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE--EEecc
Q 009675 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL--YYGMD 365 (529)
Q Consensus 318 ~~~GIDip~v~~VI~~~~p~s~~~y~Q~~GRagR~G~~g~~i~--~~~~~ 365 (529)
+++|||++++++||+||+|+++..|.|++||++|.|+.+.+.+ ++..+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999998776544 44444
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=9.9e-18 Score=165.90 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=106.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEeCcHHHHHHHHHHHHHHcCCc----eeEec
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~----~~~~~lVi~P~~~L~~q~~~~l~~~gi~----~~~~~ 109 (529)
+|+|+|.++++.++++++.++.+|||+|||+++++++.. ..+++||++|+++|+.|+.+.+++++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999999889999999999999999877664 2459999999999999999999997542 23333
Q ss_pred cCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHH
Q 009675 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (529)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~ 189 (529)
++..... ......+++++||+.+..... .....+++||+||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3321110 111347788888876644321 1234589999999999873 24444555
Q ss_pred hC-CCCCEEEEeecCChhH
Q 009675 190 YL-PDVPILALTATAAPKV 207 (529)
Q Consensus 190 ~~-~~~~ii~lSAT~~~~~ 207 (529)
.+ +..++++||||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 5788999999997653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=1.8e-17 Score=159.85 Aligned_cols=139 Identities=22% Similarity=0.140 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCc-eeEeccCccHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (529)
+++++|.+++..+++++++++++|||+|||++++.++...++.++|++|+++|+.|+.+.+.++++. +..+.+...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 6899999999999999999999999999999999888888889999999999999999999998887 666655432
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCE
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~i 196 (529)
...+++++|++.+.. ..... ...+++|||||||++...+ | . .+...++..++
T Consensus 170 ------------~~~~i~v~T~~~l~~------~~~~~-~~~~~llIiDEaH~l~~~~--~----~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 170 ------------ELKPLTVSTYDSAYV------NAEKL-GNRFMLLIFDEVHHLPAES--Y----V---QIAQMSIAPFR 221 (237)
T ss_dssp ------------CCCSEEEEEHHHHHH------THHHH-TTTCSEEEEECSSCCCTTT--H----H---HHHHTCCCSEE
T ss_pred ------------CcCCEEEEeHHHHHh------hHHHh-cccCCEEEEECCccCCChH--H----H---HHHHhccCCEE
Confidence 125677777664421 11111 2358999999999997643 2 2 35566778889
Q ss_pred EEEeecCChhH
Q 009675 197 LALTATAAPKV 207 (529)
Q Consensus 197 i~lSAT~~~~~ 207 (529)
++||||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998653
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.71 E-value=9e-16 Score=167.66 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=102.5
Q ss_pred CEEEEeecCChhHHHHHHHHhccCCCeEE--eccCCCCccEEEEEec------CchhhHHH----HHHHHHHhcCCceEE
Q 009675 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK------DLLDDAYA----DLCSVLKANGDTCAI 262 (529)
Q Consensus 195 ~ii~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~nl~~~v~~~------~~~~~~~~----~l~~~l~~~~~~~~I 262 (529)
.+|++|||+++ ...+...+|+. ...+ .+.++..+....+... ......+. .|.++++..+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 46899999997 57778888886 4333 2344444443322111 00111222 3444444444 4589
Q ss_pred EEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC--ccccccccCC--ccEEEEeCCCCC
Q 009675 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (529)
Q Consensus 263 If~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GIDip~--v~~VI~~~~p~s 338 (529)
||++|....+.+++.|+. +... ..-+++..+|..++++|+ ++-.||++|. .|++|||+|+ .+.||..++|-.
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2222 555666778999999999 8888999985 9999999996 679999998841
Q ss_pred -------------------H----------HHHHHHHcccCCCCCCceEEEEEecc
Q 009675 339 -------------------M----------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (529)
Q Consensus 339 -------------------~----------~~y~Q~~GRagR~G~~g~~i~~~~~~ 365 (529)
. ....|.+||+=|....--++++++..
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 1 11259999999987655566666543
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=146.69 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEeCcHHHHHHHHHHHHHH-cCCceeEe
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~--------~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (529)
.++++|.++++.+.+|+++++.||||+|||.++.++++.. ...++++.|+++|+.|..+.+.. ++......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4789999999999999999999999999999887776542 23899999999999999888875 22221100
Q ss_pred ccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccc-ccCCCCCHHHHHHHHHH
Q 009675 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (529)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~-~~~g~~fr~~y~~l~~l 187 (529)
.+... ...-.......+++++|| +.+..+... ....+++|||||||.+ .+.+ |. ...+..+
T Consensus 141 ~g~~~-------~~~~~~~~~~~~Ivv~Tp------g~l~~~l~~-~l~~~~~lVlDEah~~~~~~~--~~--~~~l~~i 202 (235)
T 3llm_A 141 CGYSV-------RFESILPRPHASIMFCTV------GVLLRKLEA-GIRGISHVIVDEIHERDINTD--FL--LVVLRDV 202 (235)
T ss_dssp EEEEE-------TTEEECCCSSSEEEEEEH------HHHHHHHHH-CCTTCCEEEECCTTSCCHHHH--HH--HHHHHHH
T ss_pred EEEee-------chhhccCCCCCeEEEECH------HHHHHHHHh-hhcCCcEEEEECCccCCcchH--HH--HHHHHHH
Confidence 00000 000001112355655555 443333222 4677999999999984 2221 21 1356667
Q ss_pred HHhCCCCCEEEEeecCChhH
Q 009675 188 RNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 188 ~~~~~~~~ii~lSAT~~~~~ 207 (529)
....++.+++++|||.+...
T Consensus 203 ~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH
T ss_pred HhhCCCCeEEEEecCCCHHH
Confidence 77788999999999999875
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.38 E-value=2.1e-06 Score=93.54 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHH--HHHHHHHhc-----CCCeEEEeCcHHHHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKT--l~~~lp~l~-----~~~~~lVi~P~~~L~~q~~ 95 (529)
...+...|.+.|+-..-.+.|++++..++.++.+++.+|+|+||| ++++++.+. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 345667777766533336899999999999999999999999999 677787775 2458999999999998876
Q ss_pred HHHHH
Q 009675 96 IGLKE 100 (529)
Q Consensus 96 ~~l~~ 100 (529)
+.+..
T Consensus 214 e~~~~ 218 (608)
T 1w36_D 214 ESLGK 218 (608)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 66543
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.96 E-value=4.5e-05 Score=83.67 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeE
Q 009675 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~d-vlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~ 107 (529)
.++.+-|.+|+..++..++ .+|+||+|+|||.+.. .-.+..+.++||++||..-+.+.+++|...+.+..-
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilR 262 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILR 262 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEE
Confidence 3578899999999998776 4789999999996532 223446889999999999999999999887665443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.78 E-value=0.0002 Score=78.21 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=56.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009675 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (529)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lVi~P~~~L~~q~~~~l~~~gi~~ 105 (529)
...+.+.|.+++..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+.+.|++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 346889999999999987778999999999996532 33333 46789999999999999999988876553
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00032 Score=78.48 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009675 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (529)
Q Consensus 36 ~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lVi~P~~~L~~q~~~~l~~~gi~~ 105 (529)
+..+.+.|.+|+..++.+.-++|.||+|+|||.+.. +..+. .+.++++++|+...+.+..+++.+.|+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 346789999999999887778999999999996532 22222 46789999999999999999998876543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.60 E-value=0.00038 Score=77.79 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l~--~~~~~lVi~P~~~L~~q~~~~l~~~gi~~ 105 (529)
..+.+.|.+++..++.+.-.++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+...|++.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 45789999999999988778999999999996532 33333 46789999999999999999988877653
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.49 E-value=0.00019 Score=77.29 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-cCCCeEEEeCcHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMENQVI 96 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l-~~~~~~lVi~P~~~L~~q~~~ 96 (529)
.+.+.|++++..++.++.+++.+|.|+|||.... +-.+ ..+..+++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 4889999999999999999999999999995432 2222 247789999999888765443
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.40 E-value=0.00045 Score=72.46 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=46.4
Q ss_pred cCCCCCcHHHHHHHHHHHcC----C-CEEEEcCCCchHHHHHH--HHHhc-CCC-eEEEeCcHHHHHHHHHHH
Q 009675 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVIG 97 (529)
Q Consensus 34 fg~~~~r~~Q~~~i~~~l~g----~-dvlv~apTGsGKTl~~~--lp~l~-~~~-~~lVi~P~~~L~~q~~~~ 97 (529)
..+..+++.|++++..++.. + .+++.|+.|+|||.... +..+. .+. .+++++||...+....+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 47789999999999987643 3 78999999999996432 22222 233 689999998776654433
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.10 E-value=0.049 Score=59.22 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-cC----CCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AK----PGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l-~~----~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
..+++-|.+++.. .+..++|.|+.|||||.+.. +..+ .. ...++++++|+..+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999973 36789999999999997643 2222 22 357999999999999988888763
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.01 E-value=0.0024 Score=62.96 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccc-
Q 009675 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID- 323 (529)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GID- 323 (529)
.++.|+..+++ .+.+++||++..+..+-+..+|...|+....+.|.....+ .+ -.++...+.+.|.+.+-|+|
T Consensus 113 ~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~gin~ 186 (328)
T 3hgt_A 113 VLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINFTKY 186 (328)
T ss_dssp HHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTS
T ss_pred HHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCCcCc
Confidence 34445555544 4678999999999999999999999999999999855432 21 12456666666888888886
Q ss_pred ----cCCccEEEEeCCCCCHHHH-HHHHcccCCCC----CCceEEEEEecccHHHH
Q 009675 324 ----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ----LPSKSLLYYGMDDRRRM 370 (529)
Q Consensus 324 ----ip~v~~VI~~~~p~s~~~y-~Q~~GRagR~G----~~g~~i~~~~~~d~~~~ 370 (529)
....+.||.||..+++..- +|.+-|+.|.| ++-..+-+....-.+..
T Consensus 187 ~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 187 PIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred ccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 5678999999999888875 99998998873 33455666666665543
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.61 E-value=0.012 Score=52.83 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchHHHHH
Q 009675 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 41 ~~Q~~~i~~~l---------~g~dvlv~apTGsGKTl~~ 70 (529)
+.|++++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 35666555543 3678999999999999654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.24 E-value=0.012 Score=60.61 Aligned_cols=45 Identities=13% Similarity=-0.078 Sum_probs=33.7
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
-.++.|+.|+|||...+ .+......+|++|+++++.++.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~--~~~~~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL--SRVNFEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHHH--HHCCTTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHH--HHhccCCeEEEeCCHHHHHHHHHHhhhc
Confidence 35789999999997543 2223356799999999999888777543
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.083 Score=52.12 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
+..+++.+|+|+|||++.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999764
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.77 E-value=0.059 Score=54.22 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56899999999999754
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.55 E-value=0.092 Score=53.24 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh----cC-CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AK-PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l----~~-~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.+.|+|+..+..+...+-+++..+-+.|||......++ .. +..+++++|+..-+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 68999999998875556688999999999976543322 22 45799999999988777766554
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.16 E-value=0.014 Score=54.56 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=24.6
Q ss_pred CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLI 88 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~ 88 (529)
|.=+++.+|+|+|||...+- -+..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 45567889999999975432 2223467888887754
No 109
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.08 E-value=0.073 Score=54.08 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeC
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~ 85 (529)
.+.+++.+|+|+|||.....-+-..+...+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 468999999999999765443333344444333
No 110
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.01 E-value=0.084 Score=52.12 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=30.5
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHH-HHHH-HHcCCCEEEEcCCCchHHHHHH
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLD-AIQA-VLSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~-~i~~-~l~g~dvlv~apTGsGKTl~~~ 71 (529)
....|.++.-.++..+.|++...+ |.... .+.. ....+.+++.+|+|+|||+...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~----~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVIL----PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHH----HHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHH----HHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 344566666667777777664311 00000 0000 0113569999999999997654
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.01 E-value=0.047 Score=48.43 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
.+.+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467899999999999654
No 112
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.92 E-value=0.29 Score=44.34 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=24.0
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
.-.+|+|||+|.+... ....|..+....+....+++++..+
T Consensus 102 ~~~vliiDe~~~l~~~------~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEADALTAD------AQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeChhhcCHH------HHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 4568999999998542 2244555555554433444554443
No 113
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.91 E-value=0.068 Score=55.61 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=57.0
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHHH-HHH--hc-CCCeEEEeCcHHHHHHHHHHHHH--HcCCceeEec-cCccH
Q 009675 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IPA--LA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (529)
Q Consensus 46 ~i~~~l~----g~dvlv~apTGsGKTl~~~-lp~--l~-~~~~~lVi~P~~~L~~q~~~~l~--~~gi~~~~~~-~~~~~ 114 (529)
.+..++. |.-+++.|++|+|||...+ +.. .. .+..+++++.-.+- .+...++. ..++....+. +....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 4555553 3456788999999995433 221 11 34578887743221 23333332 2333322111 11222
Q ss_pred HHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
.....+...+..-. ..++.+..+..+........+........+++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 22222211111000 1223332221121122333344444444689999999999874
No 114
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.84 E-value=0.31 Score=47.35 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
..+++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.84 E-value=0.055 Score=53.80 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHHH
Q 009675 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 39 ~r~~Q~~~i~~~l----~g~---dvlv~apTGsGKTl~~~ 71 (529)
+.|+|.+++..+. +|+ -+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 343 38899999999997543
No 116
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.81 E-value=0.059 Score=55.92 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=69.5
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-HH--Hhc-CCCeEEEeCcHHHHHHHHHHHHH--HcCCceeEec-cCccH
Q 009675 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (529)
Q Consensus 46 ~i~~~l~g----~dvlv~apTGsGKTl~~~-lp--~l~-~~~~~lVi~P~~~L~~q~~~~l~--~~gi~~~~~~-~~~~~ 114 (529)
.+..++.| .=+++.|++|+|||...+ +. +.. .+..+++++.--. ..+...++. ..++...-+. +....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCH
Confidence 34555533 346788999999995432 22 222 3557888764321 123333332 2344332221 22233
Q ss_pred HHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccC--CC--CCH-----HHHHHHH
Q 009675 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFR-----PSYRKLS 185 (529)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~--g~--~fr-----~~y~~l~ 185 (529)
.+...+...+..-. ..++.+..+..+........+........+++||||..+.+..- +. .-| .....|.
T Consensus 268 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk 346 (444)
T 2q6t_A 268 RDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK 346 (444)
T ss_dssp HHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 33222222111100 12233322111222233344444444446999999999998643 21 112 1112233
Q ss_pred HHHHhCCCCCEEEEeec
Q 009675 186 SLRNYLPDVPILALTAT 202 (529)
Q Consensus 186 ~l~~~~~~~~ii~lSAT 202 (529)
.+.+.+ ++|+++++-.
T Consensus 347 ~lAke~-~v~vi~lsql 362 (444)
T 2q6t_A 347 ALAREL-GIPIIALSQL 362 (444)
T ss_dssp HHHHHH-TSCEEEEEEC
T ss_pred HHHHHh-CCeEEEEecC
Confidence 332222 6888888754
No 117
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.79 E-value=0.07 Score=53.15 Aligned_cols=148 Identities=21% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEeCc---HHHHHHHHHHHHHHcCCceeEe-ccCccH
Q 009675 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTM 114 (529)
Q Consensus 46 ~i~~~l~g----~dvlv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~ 114 (529)
.+..++.| .=+++.|++|.|||...+ + .+...+..+++++. ...|+....... .++...-+ .+..+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~--~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL--TSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH--HCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh--hCCCHHHHhcCCCCH
Confidence 34444443 346788899999995432 1 22235778888874 333333322221 12222111 122233
Q ss_pred HHHHHHHH---HhhcCCCcccEEE-eCcccccCh-hhHHHHHhhhccC-CccEEEEecccccccCC------CCCHHHHH
Q 009675 115 QVKTKIYE---DLDSGKPSLRLLY-VTPELTATP-GFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYR 182 (529)
Q Consensus 115 ~~~~~~~~---~~~~~~~~~~ll~-~tpe~v~t~-~~~~~l~~~~~~~-~l~~iViDEaH~~~~~g------~~fr~~y~ 182 (529)
.+...+.. .+.. .++.+ -+|. .+. .....+..+.... .+++||||-.+.+..-+ ...+...+
T Consensus 113 ~e~~~l~~a~~~l~~----~~l~I~d~~~--~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQ----KKLFFYDKSY--VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp HHHHHHHHHHHHHHH----SCEEEECCTT--CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCeEEeCCCC--CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 22222211 1211 22322 2222 122 2333444444444 69999999999885421 11222333
Q ss_pred HHHHHHHhCCCCCEEEEeec
Q 009675 183 KLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 183 ~l~~l~~~~~~~~ii~lSAT 202 (529)
.|..+-+.+ ++|++++|-.
T Consensus 187 ~LK~lAkel-~vpVi~lsQl 205 (338)
T 4a1f_A 187 ELKTLAREL-EIPIIALVQL 205 (338)
T ss_dssp HHHHHHHHH-TSCEEEEEEC
T ss_pred HHHHHHHHc-CCeEEEEEec
Confidence 444443333 7888888765
No 118
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.51 E-value=0.054 Score=58.67 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g--~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~ 92 (529)
.++.-|.+++..++.- ...++.|+-|.|||.+.-+.+-......+|.+|+.+-++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 5788999999998863 346889999999996544333333345689999866443
No 119
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.50 E-value=0.26 Score=49.35 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999754
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.47 E-value=0.18 Score=50.53 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999754
No 121
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.46 E-value=0.19 Score=49.69 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997654
No 122
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.40 E-value=0.11 Score=51.28 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.||+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3689999999999997543
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.32 E-value=0.11 Score=45.10 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (529)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999964
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.30 E-value=0.16 Score=46.95 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++.+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999653
No 125
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.26 E-value=0.094 Score=58.28 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=66.1
Q ss_pred CceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cccccccCCccEEEE
Q 009675 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GIDip~v~~VI~ 332 (529)
+.+++|.++|+.-+.++++.+.+ .|+.+..+||+++..+|...++.+.+|+.+|+|+|.. +...++..++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 45799999999988888877765 3799999999999999999999999999999999965 445678889998885
Q ss_pred eCC
Q 009675 333 FNI 335 (529)
Q Consensus 333 ~~~ 335 (529)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 443
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.23 E-value=0.14 Score=43.90 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.8
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (529)
..+.++++.+|+|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35678999999999999754
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.22 E-value=0.1 Score=50.15 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~--l~g~dvlv~apTGsGKTl~~~ 71 (529)
..|.++.-.++..+.|.+..... -...+.+... ..++.+++.+|+|+|||....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34555666666666666542210 0111222222 235679999999999997654
No 128
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.20 E-value=0.2 Score=53.98 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH----hcC-CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~----l~~-~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.+.|+|+..+..+-..+-+++.++-|.|||.+....+ +.. +..+++++|+...+.+....++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4789999999887556778999999999997644222 222 34899999999998887776665
No 129
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.14 E-value=0.33 Score=47.30 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (529)
.++.+++.+|+|+|||+....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 356799999999999976543
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.08 E-value=0.065 Score=48.85 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=66.1
Q ss_pred CCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHH-HHHHHHHHHHHcCCceeEeccCcc--HHHHHHHHHHhhcC
Q 009675 54 RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~-L~~q~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~ 127 (529)
..+++..++|.|||.+++ +-++-.+.+++|+.-... .-..-.+.+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 478899999999998765 445556888888854331 000001112223222211111000 0000000
Q ss_pred CCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 128 ~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
......-+....+....+.+++||+||+-....+|.--. ..+-.+....|...-+.+|+-..+.
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000012233344455557799999999987766663212 2344445555555566677665554
No 131
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.06 E-value=0.3 Score=47.19 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.||+|+|||....
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997654
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.04 E-value=0.11 Score=49.82 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997654
No 133
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.03 E-value=0.27 Score=49.26 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997654
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.02 E-value=1.4 Score=38.61 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999754
No 135
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.93 E-value=0.21 Score=51.76 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999997654
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.12 Score=54.56 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.7
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
.-.+|+|||+|.+..... .....|..+... .+.|+|+.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 456899999999976321 122344444444 4678888887754
No 137
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.65 E-value=0.22 Score=48.45 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
++++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999654
No 138
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.64 E-value=0.14 Score=46.08 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=25.5
Q ss_pred cCCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEeCcHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLI 88 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~ 88 (529)
.|+-.++.+|.|+|||...+ +. ....+..++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35556889999999997643 22 223567888888874
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.58 E-value=0.26 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.33 E-value=1.3 Score=40.47 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=23.2
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
-.+|||||+|.+.. .....|..+....+...+++++++..
T Consensus 127 ~~vlviDe~~~l~~------~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 127 FKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp SEEEEEETGGGSCH------HHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred ceEEEEECcccccH------HHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 46899999999743 22344444445444444555555443
No 141
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.27 E-value=0.19 Score=52.02 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQIP 73 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (529)
..+++.+|+|+|||.....-
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 36899999999999765443
No 142
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.11 E-value=0.16 Score=51.76 Aligned_cols=79 Identities=8% Similarity=0.086 Sum_probs=65.3
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc----cccccCCcc
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GIDip~v~ 328 (529)
..+.++||.++++.-+.++++.+++ .|+.+..+||+.+..+|....+.+.+|+.+|+|+|...- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3456899999999999999999998 588999999999999998888999999999999996422 114556788
Q ss_pred EEEEeC
Q 009675 329 LVCHFN 334 (529)
Q Consensus 329 ~VI~~~ 334 (529)
+||.-.
T Consensus 142 ~iViDE 147 (414)
T 3oiy_A 142 FVFVDD 147 (414)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 888544
No 143
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.05 E-value=0.29 Score=49.02 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEE
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l~~~~~~l 82 (529)
.+.+++.+|+|+|||.....-+-..+...+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 367999999999999765433333333333
No 144
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.02 E-value=0.16 Score=46.90 Aligned_cols=36 Identities=17% Similarity=-0.079 Sum_probs=24.2
Q ss_pred CCEEEEcCCCchHHHHHHHH---HhcCCCeEEEeCcHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~~ 89 (529)
+=.++.+|.|+|||...+-- +...+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 33467899999999764422 2345788999988753
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.00 E-value=1.3 Score=40.95 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=30.3
Q ss_pred cCCCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~lp--~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
.|.-+++.+|+|+|||... ++. ....++.+++++-... ..+..+.+...|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 3566789999999999652 232 2234667777764322 2344445554443
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.97 E-value=0.32 Score=47.70 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=24.0
Q ss_pred CccEEEEecccccc-cCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 158 LLNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 158 ~l~~iViDEaH~~~-~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
...+++|||+|.+. . .....|..+.+..+....+.++++...
T Consensus 105 ~~~vliiDEi~~l~~~------~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA------ESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGH------HHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcH------HHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 46789999999986 3 122344444444443334445555443
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.91 E-value=0.37 Score=45.42 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4678999999999997543
No 148
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.84 E-value=1.2 Score=43.64 Aligned_cols=122 Identities=9% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccC-----
Q 009675 46 AIQAVLS----GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST----- 111 (529)
Q Consensus 46 ~i~~~l~----g~dvlv~apTGsGKTl~~-~l--p~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~~----- 111 (529)
.+..++. |.=+++.|++|+|||... ++ -+...+..+++++.--. ..+...++.. .++...-+..+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l~ 135 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 135 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence 4455553 345788999999999433 22 22334567888874311 2233333332 23332111111
Q ss_pred -ccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCcc--EEEEeccccccc
Q 009675 112 -QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISS 172 (529)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~~~~ 172 (529)
............+.. ..+.+..+.-+........+........++ +||||-.+.+..
T Consensus 136 ~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp SSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 011111111111211 233332221122233444444444444688 999999998864
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.84 E-value=0.21 Score=48.92 Aligned_cols=42 Identities=7% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
+...++||||||.+... ..+.|....+..|...++++.++-+
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECCh
Confidence 34689999999998642 2345556666666555666665543
No 150
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.82 E-value=0.067 Score=58.59 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l-~----~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
.+++-|++++.. .+..++|.|+.|||||.+.. +.-+ . ....+++|++|+..+.+..+++..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 478999999975 36789999999999996543 2111 1 246799999999999998888876
No 151
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.70 E-value=0.11 Score=57.39 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEeCcHHHHHHHHHHHHHH
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~--lp~l-~----~~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
..+++-|++++.. .+..++|.|+.|||||.+.. +.-+ . ....+|+|+.|+..+.+..+++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3589999999976 35789999999999996543 2222 2 235799999999998888877765
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.68 E-value=0.9 Score=45.79 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.5
Q ss_pred CCEEE--EcCCCchHHHHH
Q 009675 54 RDCFC--LMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv--~apTGsGKTl~~ 70 (529)
..+++ .+|.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35677 899999999653
No 153
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.56 E-value=0.15 Score=59.90 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH---HHHhcC------CCeEEEeCcHHHHHHHHHHHHHH
Q 009675 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (529)
Q Consensus 38 ~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~---lp~l~~------~~~~lVi~P~~~L~~q~~~~l~~ 100 (529)
++++-|.++|..- +++++|.|+.|||||.+.. +-.+.. ...++++++|++.+....+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5899999999864 8899999999999997753 222222 24699999999988887766655
No 154
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.30 E-value=0.08 Score=48.18 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEeCcHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~ 88 (529)
|+=.++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4446789999999996544222 23577889888874
No 155
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.07 E-value=0.18 Score=49.42 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++.+++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999643
No 156
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.78 E-value=0.97 Score=45.39 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCCCCCCCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcH-------------HHHHHHHHHHc-C-----CCEEEEcC
Q 009675 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS-G-----RDCFCLMP 61 (529)
Q Consensus 1 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~-------------~Q~~~i~~~l~-g-----~dvlv~ap 61 (529)
|+++..+..+....... .......++..+.+.||...... -=...++.++. | .-+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 4 MSKDATKEISAPTDAKE-RSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp --------------CCH-HHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred cccccccccCCCCCHHH-HHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 55555555443333221 11222344555556677543211 11345666676 2 45778899
Q ss_pred CCchHHHHHH-HH--HhcCCCeEEEeCcH
Q 009675 62 TGGGKSMCYQ-IP--ALAKPGIVLVVSPL 87 (529)
Q Consensus 62 TGsGKTl~~~-lp--~l~~~~~~lVi~P~ 87 (529)
+|+|||...+ +. +...++.++++..-
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 9999995432 22 12345677777654
No 157
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.67 E-value=0.62 Score=48.79 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
.+.+++.+|+|+|||+....
T Consensus 238 ~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHH
Confidence 36799999999999986543
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.58 E-value=0.74 Score=45.26 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
..+++.+|+|+|||....
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999997654
No 159
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.45 E-value=0.31 Score=56.43 Aligned_cols=79 Identities=8% Similarity=0.086 Sum_probs=65.8
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc----cccccCCcc
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GIDip~v~ 328 (529)
..+..+||.++|+.-+.++++.+++ .|+.+..+||+++..+|....+.+.+|..+|+|+|...- .-++..+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3456799999999999999999998 578999999999998888889999999999999996322 115567899
Q ss_pred EEEEeC
Q 009675 329 LVCHFN 334 (529)
Q Consensus 329 ~VI~~~ 334 (529)
+||.-.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 988644
No 160
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.25 Score=50.22 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=33.6
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHH-HHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q-~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
...|.+++-.++..+.|++..-+ |.. -+.+..+- -.+.+|+.+|+|+|||+..-
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~----Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIEL----PVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 45677777777777777764221 111 11222221 23789999999999998653
No 161
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.37 E-value=0.11 Score=47.67 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-.++.|+.|+|||+...
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35789999999998543
No 162
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.80 E-value=1.7 Score=44.80 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEeCcHHHHHHHHHHHHHH--cCCceeEeccC-----
Q 009675 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST----- 111 (529)
Q Consensus 46 ~i~~~l~g----~dvlv~apTGsGKTl~~~-l--p~l~~~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~~~~~----- 111 (529)
.+..++.| .=+++.|++|.|||...+ + -+...+..+++++.--+ ..|.+.++.. .++....+..+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 34555543 446788999999995432 2 22334678888874321 1233333322 23332211111
Q ss_pred -ccHHHHHHHHHHhhcCCCcccEEE-eCcccccChhhHHHHHhhhccCCcc--EEEEecccccccCC-CCCHH-HH----
Q 009675 112 -QTMQVKTKIYEDLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWG-HDFRP-SY---- 181 (529)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~ll~-~tpe~v~t~~~~~~l~~~~~~~~l~--~iViDEaH~~~~~g-~~fr~-~y---- 181 (529)
............+.. .++.+ -+|. +........+........++ +||||=.+.+..-+ ..-|. .+
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~-~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~ 339 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQIS 339 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSS-CBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHH
Confidence 011111111122211 23332 2232 22233444444444444689 99999999886432 11222 11
Q ss_pred HHHHHHHHhCCCCCEEEEeec
Q 009675 182 RKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 182 ~~l~~l~~~~~~~~ii~lSAT 202 (529)
..|..+.+.+ ++|++++|-.
T Consensus 340 ~~Lk~lAke~-~v~vi~lsql 359 (444)
T 3bgw_A 340 RDLKKMAREL-DVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHH-TCEEEEEEEC
T ss_pred HHHHHHHHHh-CCeEEEEecC
Confidence 2233332222 6888888764
No 163
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.78 E-value=0.38 Score=46.66 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||....
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997554
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.76 E-value=0.28 Score=44.78 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=22.4
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhcCCCeEEEeC
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVS 85 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp~l~~~~~~lVi~ 85 (529)
|.-+++.+|+|+|||.... +.. ..+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 4567899999999995443 433 4466777765
No 165
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.74 E-value=1.2 Score=41.99 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+.+++.+|+|+|||....
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3568999999999997543
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.70 E-value=2.1 Score=42.06 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.62 E-value=0.98 Score=44.63 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=26.4
Q ss_pred CCCCCCChhHHHHHHHHHhc-CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH
Q 009675 15 QKNKPLHEKEALVKLLRWHF-GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~f-g~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~ 71 (529)
..+.++.-++.....|+... .. -...++++.||+|+|||....
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHH
Confidence 34444555666666666532 11 022349999999999997543
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.55 E-value=2.4 Score=41.94 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~ 205 (529)
+...++||||+|.+.. .....|..+.+..|...+++++++-.+
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3457899999999854 223445555555554445555555443
No 169
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.43 E-value=2.3 Score=43.67 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=26.8
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hhc-CCCeEEEeC--cHHHHHHHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVS--PLIALMENQVIGLK 99 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l~-~~~~~lVi~--P~~~L~~q~~~~l~ 99 (529)
-+++++++|+|||.... +. .+. .+.+++++. |.+.-+.+|...+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 46788999999996543 22 222 355666665 55555555544443
No 170
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.42 E-value=0.9 Score=50.28 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 467999999999999754
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.36 E-value=0.75 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997543
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=1.3 Score=42.82 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=25.7
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~ 206 (529)
...+++|||+|.+... ....|..+....+....+.++++.+..
T Consensus 110 ~~~vliiDe~~~l~~~------~~~~L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD------AQQALRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCeEEEEeCCCcCCHH------HHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 4678999999998541 224455555555544345555554443
No 173
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.20 E-value=0.66 Score=43.29 Aligned_cols=36 Identities=22% Similarity=0.007 Sum_probs=25.8
Q ss_pred CCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEeCcHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLI 88 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp---~l~~~~~~lVi~P~~ 88 (529)
|+=.++.++.|+|||...+-- +...+.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 555678899999999654322 234578899988875
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.90 E-value=3.5 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=21.8
Q ss_pred cCCCEEEEcCCCchHHHH-HHHHHh--cCCCeEEEeC
Q 009675 52 SGRDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVS 85 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~-~~lp~l--~~~~~~lVi~ 85 (529)
.|.-+++.+|+|+|||.. .++... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356678899999999943 333322 2355666665
No 175
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.46 E-value=0.35 Score=49.75 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=31.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhcCCCCCcHHH-HHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q-~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
+...|.+++-.++..+.|++..-+ |.. -+.+..+- -.+.+|+.+|+|+|||+..-
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~----pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIEL----PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 344566777666766666653211 111 11122211 13789999999999998643
No 176
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.48 Score=48.93 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=36.2
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCCCCCcHH-HHHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~-Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
.+...|.+++-.+++.+.|++..-+ |. .-+.+..+- -.+.+|+.+|+|+|||+..-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~----pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVEL----PLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHH----HhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 3456788888888888888875221 11 112222221 24789999999999997543
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.04 E-value=1.8 Score=50.32 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cccccccCCccEEE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GIDip~v~~VI 331 (529)
.+.+++|.++|+.-+.+.++.+.+ .++.+..+++..+..++...++.+.+|+.+|+|+|.. +...+...++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999988888874 3678999999999999999999999999999999954 45557788888877
Q ss_pred E
Q 009675 332 H 332 (529)
Q Consensus 332 ~ 332 (529)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.04 E-value=1.1 Score=44.18 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=26.1
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~ 204 (529)
...++||||+|.+... .-..|..+.+..+....+.++++..
T Consensus 110 ~~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCc
Confidence 3678999999998642 2245556666666555555555543
No 179
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.91 E-value=1.3 Score=38.96 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred EEEEcCCCchHHHHHHHHHhc--CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccE
Q 009675 56 CFCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~--~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (529)
.++..+....|-. .+.-.+. ..+++||.++++..+......|...|+.+..+++..+...+..+......+. .++
T Consensus 11 ~~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~v 87 (175)
T 2rb4_A 11 YYVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKV 87 (175)
T ss_dssp EEEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSE
T ss_pred EEEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeE
Confidence 3444444444543 2333333 3678999999999999999999999999999999999999998888888775 788
Q ss_pred EEeCc
Q 009675 134 LYVTP 138 (529)
Q Consensus 134 l~~tp 138 (529)
+++|.
T Consensus 88 LvaT~ 92 (175)
T 2rb4_A 88 LITTN 92 (175)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88884
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.89 E-value=2.3 Score=43.61 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~-~~~~~ii~lSAT~~~~~ 207 (529)
...++++||++-.... +.+ ......+..+.+. -|..-++.++|+.....
T Consensus 178 ~~~DvvIIDTaGr~~~-~~d-~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGY-GEE-TKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp TTCSEEEEEECCCSSS-CCT-THHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred cCCCEEEEECCCCccc-cCC-HHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 3588999999976430 011 1223444444433 34445677888765544
No 181
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.76 E-value=5.3 Score=38.77 Aligned_cols=17 Identities=24% Similarity=-0.123 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
++.+++.||.|+|||..
T Consensus 31 ~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 57789999999999964
No 182
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.66 E-value=1.4 Score=38.26 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=53.1
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.++++||.++++.-+....+.|...|+.+..+++......+.........+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 4678999999999999999999999999999999999999988888888775 77888773
No 183
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.42 E-value=0.75 Score=47.02 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=33.6
Q ss_pred cccCCCCCCChhHHHHHHHHHhcCC--CCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg~--~~~r~~Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
.....|.+++-.++..+.|++..-+ ..+ +.+..+- -.+.+|+.+|+|+|||+..-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p-----e~f~~~Gi~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHP-----ELYEEMGIKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCC-----HHHHHHTCCCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCH-----HHHHhCCCCCCCCCceECCCCchHHHHHH
Confidence 3455677777777777777764221 111 1122211 23779999999999998543
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.18 E-value=3.8 Score=37.62 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=22.5
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHH--hc------CCCeEEEeCc
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LA------KPGIVLVVSP 86 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lp~--l~------~~~~~lVi~P 86 (529)
.|.-+.+.+|+|+|||.... +.. +. ....++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 34667899999999996543 333 22 1456676653
No 185
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.18 E-value=0.33 Score=49.91 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=33.9
Q ss_pred cccCCCCCCChhHHHHHHHHHhcC--CCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 12 SQTQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~fg--~~~~r~~Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
.+...|.+++-.++..+.|++..- +.++ +.+..+- -.+.+|+.||+|+|||+..-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~p-----e~f~~~g~~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRA-----DKFKDMGIRAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCS-----HHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCH-----HHHHhCCCCCCCeeEEECcCCCCHHHHHH
Confidence 345567778877888777776421 1111 1122111 23789999999999997643
No 186
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.17 E-value=2.1 Score=40.17 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=51.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-------ccccccC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-------GMGIDRK 325 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-------~~GIDip 325 (529)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+...+...+ .+..+|+|+|..- ..+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999988877764 78899999998866544332 3567899999531 1245566
Q ss_pred CccEEEE
Q 009675 326 DVRLVCH 332 (529)
Q Consensus 326 ~v~~VI~ 332 (529)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 6776664
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.05 E-value=0.85 Score=50.59 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=39.0
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEE
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~~lp~l~~~~~~l 82 (529)
...|.+++..++..+.|++..-+.--+|.+..-. .+...+.+++.+|+|+|||+..-.-+-..+...+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 3456777777888888887544332222111000 0012367999999999999865544444444333
No 188
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.56 E-value=0.72 Score=47.31 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=31.1
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHHH-HHHHHHH--HcCCCEEEEcCCCchHHHHHH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q-~~~i~~~--l~g~dvlv~apTGsGKTl~~~ 71 (529)
...|.+++-.++..+.|++..-+ |.. .+.+..+ --.+.+++.||+|+|||+..-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~----pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVEL----PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 34566777667777666653211 111 1112211 123679999999999997543
No 189
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.52 E-value=1.6 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=17.1
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHH
Q 009675 46 AIQAVLSG-----RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 46 ~i~~~l~g-----~dvlv~apTGsGKTl~ 69 (529)
.++.++.| .-+++.+|+|+|||..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 45555543 4578899999999954
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.48 E-value=0.99 Score=44.82 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHHH-HHHh--c------CCCeEEEeCcHH
Q 009675 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPLI 88 (529)
Q Consensus 46 ~i~~~l~g-----~dvlv~apTGsGKTl~~~-lp~l--~------~~~~~lVi~P~~ 88 (529)
.+..++.| .-+++.+|+|+|||.... +..- . .++.++++.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35555543 456889999999995433 3332 2 356788887543
No 191
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.47 E-value=4 Score=36.54 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHhcC-CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeC
Q 009675 63 GGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (529)
Q Consensus 63 GsGKTl~~~lp~l~~-~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~t 137 (529)
...|.. .++-.+.. ++++||.++++.-+....+.|+..|+.+..+++..+...+.........+. .+++++|
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 456753 34444433 678999999999999999999999999999999999999988888888775 6777776
No 192
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.39 E-value=0.97 Score=47.71 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=54.8
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
.+.+||.++++.-+.+..+.|++.|+.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35789999999999999999999999999999999999999999999999999999995
No 193
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.32 E-value=1.9 Score=37.93 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
..+++||.++++.-+....+.|...|+.+..+++..+...+.........+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 3578999999999999999999999999999999999999998888888765 78888884
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.28 E-value=1.7 Score=39.54 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=52.5
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc------ccccccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GIDip~ 326 (529)
+.++||.++++.-+.++++.+++. ++.+..++|+.+...+.. .+.++..+|+|+|... ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999998888764 788999999998766543 3455778999999531 12245556
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 195
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.89 E-value=1.9 Score=40.41 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||....
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 448999999999996543
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.86 E-value=1.6 Score=48.44 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+|+.+|+|+|||+..-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998654
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.80 E-value=0.91 Score=48.73 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=54.0
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHH--hcCCCeEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~VLVaT~ 316 (529)
.+.+||.++++.-+++..+.|.+.|+.+..++|+++..++..+...+ ..+..+|+|+|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45799999999999999999999999999999999999998888888 478899999997
No 198
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.72 E-value=0.84 Score=41.40 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEeCcH
Q 009675 53 GRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPL 87 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp~l----~~~~~~lVi~P~ 87 (529)
|+=.++.+|.|+|||.- ++-++ ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcCCeEEEEccc
Confidence 56568899999999943 33222 346788888887
No 199
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.59 E-value=1.7 Score=37.75 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
..+++||.++++.-+......|...++.+..+++..+...+..+......+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999999999988888888765 77887773
No 200
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.39 E-value=1.6 Score=45.35 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 201
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.39 E-value=2 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=54.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
.++.+||.+|++.-+....+.|...|+.+..+++..+...+..+......+. .+++++|..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~~ 90 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATDV 90 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecCh
Confidence 4789999999999999999999999999999999999999999998888775 788888843
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.22 E-value=6.8 Score=38.03 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEeC
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp~l~--~~~~~lVi~ 85 (529)
+-+++.+|+|+|||.... +..+. .+++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999995433 33322 355565554
No 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.19 E-value=8.6 Score=37.27 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchHHHH
Q 009675 54 RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (529)
+-++|.||.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5678999999999964
No 204
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.06 E-value=8.1 Score=36.62 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.6
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~~ 70 (529)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 346677889999999999643
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.06 E-value=1.3 Score=53.83 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHH
Q 009675 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (529)
Q Consensus 46 ~i~~~l~------g~dvlv~apTGsGKTl~~~---lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (529)
.+..++. ++.+++.+|+|+|||.... ..+...+.+++++..--++.... +++.|++..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~---------- 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT----------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch----------
Confidence 3666776 5789999999999996542 33445678888888664432222 334443211
Q ss_pred HHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 117 ~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
.+++..|+-. ..++..+.........++|||||..-+.
T Consensus 1481 ---------------~l~v~~~~~~--E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ---------------TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------hceeecCChH--HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1223333211 1233333444445678999999997554
No 206
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.99 E-value=0.14 Score=47.90 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred hHHHHHhhhccCCccEEEEecccccccCCC---CCHHHHHHHHHHHHhCCCCCEEEEeec
Q 009675 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRPSYRKLSSLRNYLPDVPILALTAT 202 (529)
Q Consensus 146 ~~~~l~~~~~~~~l~~iViDEaH~~~~~g~---~fr~~y~~l~~l~~~~~~~~ii~lSAT 202 (529)
....+.........+++|+|-...+..... .++.....|..+.+.+ ++++++++-.
T Consensus 123 ~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~ 181 (251)
T 2zts_A 123 FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 344444445555688999999887743221 1333334444444433 6777766644
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.42 E-value=2.4 Score=47.66 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+++++.+|+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997543
No 208
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.38 E-value=4.2 Score=40.48 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCcHHH-------------HHHHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeE
Q 009675 24 EALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIV 81 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q-------------~~~i~~~l~------g~dvlv~apTGsGKTl~~~-lp--~l~~~~~~ 81 (529)
...+..+.+.||-.++.+.. ...+..++. |+-+++.+++|+|||...+ +. +...+..+
T Consensus 15 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~v 94 (356)
T 1u94_A 15 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 94 (356)
T ss_dssp HHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34455566668765543321 235666675 3557889999999995433 22 22345677
Q ss_pred EEeCc
Q 009675 82 LVVSP 86 (529)
Q Consensus 82 lVi~P 86 (529)
+++..
T Consensus 95 lyid~ 99 (356)
T 1u94_A 95 AFIDA 99 (356)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 77775
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.26 E-value=0.63 Score=39.75 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+.++++.+|+|+|||....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 56789999999999998664
No 210
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.24 E-value=2.1 Score=42.03 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HHHHh--cC------CCeEEEeCcHHHH-HHHHHHHHHHcCC
Q 009675 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPAL--AK------PGIVLVVSPLIAL-MENQVIGLKEKGI 103 (529)
Q Consensus 46 ~i~~~l~-----g~dvlv~apTGsGKTl~~-~lp~l--~~------~~~~lVi~P~~~L-~~q~~~~l~~~gi 103 (529)
.+..++. |.-+++.+|+|+|||... ++..- .. ++.+++++-...+ ..+....++.+|+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4555554 355788999999999543 34332 12 5678888754322 2233334445543
No 211
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.04 E-value=2.3 Score=39.50 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=51.9
Q ss_pred CceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----cc-cccccCCc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKDV 327 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~-~GIDip~v 327 (529)
+..+||.++++.-+.++++.+++ .++.+..++|+.+.......+.. ..+|+|+|.- +. ..++..++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45699999999999888777765 48899999999987766554432 4789999952 22 23456677
Q ss_pred cEEEE
Q 009675 328 RLVCH 332 (529)
Q Consensus 328 ~~VI~ 332 (529)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77764
No 212
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.89 E-value=1.5 Score=40.34 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc------ccccccC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRK 325 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GIDip 325 (529)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+..++...+ ...+|+|+|.-- ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3457999999999999999988763 67889999999876654432 357899999632 1234455
Q ss_pred CccEEEE
Q 009675 326 DVRLVCH 332 (529)
Q Consensus 326 ~v~~VI~ 332 (529)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 5666553
No 213
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.72 E-value=2 Score=38.35 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=50.3
Q ss_pred CCchHHHH--HHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 62 TGGGKSMC--YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 62 TGsGKTl~--~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
....|-.. -++-....++++||.++++.-+....+.|+..|+.+..+++..+...+..+......+. .+++++|.
T Consensus 28 ~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 104 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 104 (185)
T ss_dssp CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEEC
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEcC
Confidence 34567532 12222224678999999999999999999999999999999998888888888887765 77877773
No 214
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.60 E-value=2.3 Score=42.32 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCchHHHHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp~ 74 (529)
.++.+++.+|+|+|||.....-+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34689999999999998765433
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.83 E-value=13 Score=35.36 Aligned_cols=34 Identities=18% Similarity=0.028 Sum_probs=21.6
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHhc--C-CCeEEEeC
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-IPALA--K-PGIVLVVS 85 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lp~l~--~-~~~~lVi~ 85 (529)
.|.-+++.||+|+|||.... +.... . +..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667889999999995433 22221 2 33676665
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.95 E-value=10 Score=39.53 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=52.6
Q ss_pred CCCEEEEcCCCchHHHHHH-HH--HhcC-CCeEEEeCcHHHHHHHHHHHHHH--cCCceeE---eccC-ccHHHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IP--ALAK-PGIVLVVSPLIALMENQVIGLKE--KGIAGEF---LSST-QTMQVKTKIYE 122 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp--~l~~-~~~~lVi~P~~~L~~q~~~~l~~--~gi~~~~---~~~~-~~~~~~~~~~~ 122 (529)
|.=+++.|++|+|||...+ +. +... +..+++++---. ..|...++.. .++.... +..+ ....+......
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 3457789999999995432 22 2233 567888874322 2334444322 3332210 0000 00001111111
Q ss_pred HhhcCCCcccEEEe-CcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 123 DLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 123 ~~~~~~~~~~ll~~-tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
.+.. . .++.+. +|...........+........+++||||=...+..
T Consensus 321 ~~~~-~--~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 321 ELFG-N--DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HHHT-T--TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCS
T ss_pred HHhc-c--CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCC
Confidence 1111 1 223332 221122233444555544445699999998887753
No 217
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=82.23 E-value=2.7 Score=43.93 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||+...
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997654
No 218
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=81.96 E-value=0.93 Score=41.82 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEeCcHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp~---l~~~~~~lVi~P~~~ 89 (529)
.|.=.++.+|.|+|||...+--+ ...+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34556789999999996433211 223677888888653
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.57 E-value=1.6 Score=40.42 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+.+.+|+|+|||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 46778899999999996443
No 220
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.49 E-value=0.85 Score=46.79 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHh-cCCCeEEEeCcHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~--~lp~l-~~~~~~lVi~P~~~L~~ 92 (529)
...++++.|+||+|||... +++.+ ..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3578999999999999875 44443 35777888889887753
No 221
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=81.21 E-value=4.6 Score=37.09 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3557999999999999999888764 47889999987655443322 4678999995
No 222
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.08 E-value=3.6 Score=36.80 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=50.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC--CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----ccc-ccccCCcc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDVR 328 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~-GIDip~v~ 328 (529)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+. ...+|+|+|.. +.. .++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3457999999999999999999875 467888999887655433332 35789999952 111 24455666
Q ss_pred EEEE
Q 009675 329 LVCH 332 (529)
Q Consensus 329 ~VI~ 332 (529)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 223
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.65 E-value=5.5 Score=39.51 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEeCc
Q 009675 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSP 86 (529)
Q Consensus 45 ~~i~~~l~-g-----~dvlv~apTGsGKTl~~-~lp--~l~~~~~~lVi~P 86 (529)
..+..++. | +-+++.+|+|+|||... ++. +...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666776 3 55788999999999543 232 2234667777764
No 224
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.60 E-value=3.9 Score=36.50 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=49.5
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----cc-ccccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM-GIDRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~-GIDip~ 326 (529)
+.++||.++++.-+.++++.+.+. ++.+..++|+.+..+.... ..+..+|+|+|..- .. .++..+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999998888653 6788999999886554322 24567899999621 12 234556
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.37 E-value=2.9 Score=38.30 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc------ccccccCCc
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GIDip~v 327 (529)
.+.++||.++++.-+.++++.+++ .++.+..++|+.+...+... +. ...+|+|+|.-- ...++..++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 455799999999999999998887 37888899998775544332 22 347899999521 123455666
Q ss_pred cEEEE
Q 009675 328 RLVCH 332 (529)
Q Consensus 328 ~~VI~ 332 (529)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 66664
No 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.23 E-value=2.9 Score=46.59 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
++.+++.+|+|+|||.....
T Consensus 238 ~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999976543
No 227
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.02 E-value=7.7 Score=36.42 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----c--ccccccC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRK 325 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~--~~GIDip 325 (529)
.+.++||.++++.-++++++.+++ .+..+..++|+.........+ ..+ .+|+|+|.- + ..+++..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 355799999999999999888876 367788899988766544332 334 789999941 1 1245667
Q ss_pred CccEEEE
Q 009675 326 DVRLVCH 332 (529)
Q Consensus 326 ~v~~VI~ 332 (529)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777774
No 228
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.81 E-value=6.1 Score=38.24 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=54.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
.++.+||.++++.-+....+.|...|+.+..+++..+...+..+......+. .+++++|..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~v 87 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATDV 87 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECST
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEech
Confidence 4789999999999999999999999999999999999999998888888876 888888853
No 229
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.72 E-value=8.5 Score=39.74 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=22.6
Q ss_pred cCCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCC
Q 009675 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (529)
Q Consensus 156 ~~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~ 193 (529)
.++=-++++|+.|+ |-..|+.+.......|.
T Consensus 243 ~G~~VLl~~D~itR-------~a~A~reis~~~ge~P~ 273 (473)
T 1sky_E 243 QGQDGLLFIDNIFR-------FTQAGSEVSALLGRMPS 273 (473)
T ss_dssp SCCEEEEEEECTHH-------HHHHHHHHHHHHTCCCC
T ss_pred cCCcEEEEeccHHH-------HHHHHHHHHhhcCCCCc
Confidence 35556899999998 56677888777766553
No 230
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.59 E-value=7.6 Score=38.79 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=53.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.++++||.++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999988888888776 67777764
No 231
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.46 E-value=5.9 Score=36.50 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccccc-cccCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-IDip~ 326 (529)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.... .+.+..+..+|+|+|. .+..+ ++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4557999999999999999888764 5677888887654332 3344567789999994 22222 45556
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666664
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.27 E-value=3.2 Score=37.17 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999754
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=78.24 E-value=2.2 Score=41.85 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=28.1
Q ss_pred CEEEEcCCCchHHHHHH-HH--HhcC--CCeEEEeCcHHHHHHHHHHHHHHcCC
Q 009675 55 DCFCLMPTGGGKSMCYQ-IP--ALAK--PGIVLVVSPLIALMENQVIGLKEKGI 103 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp--~l~~--~~~~lVi~P~~~L~~q~~~~l~~~gi 103 (529)
-+++.+|+|+|||...+ +. +... ++.+++|..-.++-.. +++++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCC
Confidence 46789999999995422 21 1222 6788888876555321 3455554
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.03 E-value=2.1 Score=39.09 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009675 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 37 ~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~ 70 (529)
...+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3344567888888888998999999999999643
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.93 E-value=15 Score=38.17 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=19.3
Q ss_pred CEEEEcCCCchHHHHHH-HHHhc--CCCeEEEe
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVV 84 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l~--~~~~~lVi 84 (529)
-+.+++|+|+|||...- |..+. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996433 33222 35666665
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.66 E-value=4.8 Score=39.51 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
|+-+++.+|+|+|||..
T Consensus 123 gsviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPL 139 (331)
T ss_dssp SEEEEEECSCSSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45578999999999954
No 237
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.63 E-value=8.3 Score=46.29 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCc
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (529)
.-+++.+|+|+|||...+ +. +...++.+++++--.++ .|.. .+..|+..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~------------------------- 784 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI------------------------- 784 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG-------------------------
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh-------------------------
Confidence 567889999999995433 21 22345677777643322 1211 23333321
Q ss_pred ccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 131 ~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 ~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12334333311 2233334433334568999999999886
No 238
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.28 E-value=5 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997653
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.21 E-value=2.7 Score=47.18 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
.+++.+|||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.20 E-value=3 Score=40.73 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHH
Q 009675 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 48 ~~~l~g~dvlv~apTGsGKTl~~~ 71 (529)
..+..++++++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 444568999999999999996543
No 241
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.30 E-value=7.4 Score=36.11 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=49.3
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc------cccccCCc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG------MGIDRKDV 327 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~------~GIDip~v 327 (529)
+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ ....+|+|+|.--- ..++..++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 457999999999999988887753 57788899988765543322 35678999996321 12455566
Q ss_pred cEEEE
Q 009675 328 RLVCH 332 (529)
Q Consensus 328 ~~VI~ 332 (529)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66664
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.17 E-value=3 Score=43.60 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHH
Q 009675 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 44 ~~~i~~~l~g~dvlv~apTGsGKTl~~~ 71 (529)
..+..++..+.++++.+|+|+|||....
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 3444556678999999999999997654
No 243
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.75 E-value=2.6 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=42.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc------ccccccCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GIDip~ 326 (529)
.+.++||.++++.-+.++++.+.. .++.+..++|+.+..++... + .+.+|+|+|... ...++..+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 345799999999999999888875 36788999998765544322 2 237899998532 12334445
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 555553
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.60 E-value=8.9 Score=38.10 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=28.0
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEeCcHHH
Q 009675 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIA 89 (529)
Q Consensus 45 ~~i~~~l~------g~dvlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~P~~~ 89 (529)
..++.++. |.-+++.+|+|+|||.... +... ..++.++++..-.+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 34566665 3457789999999995332 2221 24667777775433
No 245
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.25 E-value=7.8 Score=38.52 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.+++||.++++.-+....+.|...++.+..+++.....++..+......+. .+++++|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 578999999999999999999999999999999999999999999888776 77888775
No 246
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.19 E-value=8.5 Score=37.44 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=52.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.+..+||.++++.-+....+.|+..|..+..+++..+...+..+......+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3668999999999999999999999999999999999999988888888765 77877774
No 247
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=73.93 E-value=4.3 Score=42.44 Aligned_cols=73 Identities=8% Similarity=0.040 Sum_probs=49.1
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc-----cc-c-ccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-----~G-I-Dip~ 326 (529)
+.++||.++++.-+.++.+.+.+. ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + +..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 667999999999998888888764 899999999987665433221 2368999995322 22 3 5667
Q ss_pred ccEEEEeC
Q 009675 327 VRLVCHFN 334 (529)
Q Consensus 327 v~~VI~~~ 334 (529)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888543
No 248
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=73.35 E-value=9.2 Score=37.74 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.++++||.++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 4688999999999999999999999999999999999999988888888765 77888884
No 249
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=73.28 E-value=8.7 Score=37.85 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=53.2
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.+.+||.++++.-+....+.|+..++.+..+++......+..+......+. .+++++|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 678999999999999999999999999999999999999999998888776 77887774
No 250
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.94 E-value=8.4 Score=38.94 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=53.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhC-CC---ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-cc-----ccccCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GM-----GIDRKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~-g~---~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~-----GIDip~ 326 (529)
.+.++||.|+++.-+.++++.+.+. +. .+..+||+....++..... ..+|+|+|.-. .. .+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4668999999999999999998875 55 8999999999887654432 35799999532 21 355667
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888874
No 251
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.92 E-value=8.8 Score=38.10 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
..+.+||.++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 3678999999999999999999999999999999999999998888888765 78888884
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.75 E-value=2.5 Score=43.20 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHHc--CCCEEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~~l~--g~dvlv~apTGsGKTl~ 69 (529)
+.+.+..++..++. |.-+++.+|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 44566777776654 33468999999999964
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.68 E-value=20 Score=36.19 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=21.1
Q ss_pred CCEEEEcCCCchHHHHHH-HH-H-hc------CCCeEEEeCc
Q 009675 54 RDCFCLMPTGGGKSMCYQ-IP-A-LA------KPGIVLVVSP 86 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp-~-l~------~~~~~lVi~P 86 (529)
.-+.+.+|+|+|||.... +. . +. .++.++++.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 557789999999995433 22 1 21 2456777754
No 254
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.57 E-value=20 Score=43.71 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHH
Q 009675 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (529)
Q Consensus 45 ~~i~~~l~------g~dvlv~apTGsGKTl~~~-lp--~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (529)
..+..++. |.-+++.+|+|+|||...+ +. +...++.+++++---++-. . ..+.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~-~--~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP-I--YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH-H--HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH-H--HHHHcCCCH----------
Confidence 45666665 3567889999999995433 21 2234567788775433311 1 133343321
Q ss_pred HHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 009675 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (529)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~ 171 (529)
-++++..|..+ ...+..+........+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12333333211 2233333333344569999999999886
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.19 E-value=30 Score=33.77 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=26.7
Q ss_pred ccEEEEecccccccCCCCCHHHHHHHHHHH-HhCCCCCEEEEeecCChhHHH
Q 009675 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 159 l~~iViDEaH~~~~~g~~fr~~y~~l~~l~-~~~~~~~ii~lSAT~~~~~~~ 209 (529)
.+++++|.+...... ... ...|..+. ...|+.+++++.+|.......
T Consensus 212 ~d~vliDtaG~~~~~-~~l---~~eL~~i~ral~~de~llvLDa~t~~~~~~ 259 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-RNL---MDEMKKIARVTKPNLVIFVGDALAGNAIVE 259 (328)
T ss_dssp CSEEEEEECCSCCTT-TCH---HHHHHHHHHHHCCSEEEEEEEGGGTTHHHH
T ss_pred chhhHHhhccchhHH-HHH---HHHHHHHHHHhcCCCCEEEEecHHHHHHHH
Confidence 567889988764321 112 23343332 234677788888887655444
No 256
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=72.07 E-value=5.1 Score=41.70 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.3
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCcHHHHHHHHHHHHHHc
Q 009675 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~ 101 (529)
.|....+.+-||||||++..--+-..+..+|||+|....+.+....|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 35567899999999997543222234667999999999999999999986
No 257
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.93 E-value=9.2 Score=37.99 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
...+++.+|+|+|||.....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 45799999999999976543
No 258
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=71.32 E-value=3.1 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
++.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999988899999999999999999999863
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.19 E-value=2.3 Score=41.40 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=23.1
Q ss_pred cCCCEEEEcCCCchHHHHH-HHHHhcCCCeEEEeCc
Q 009675 52 SGRDCFCLMPTGGGKSMCY-QIPALAKPGIVLVVSP 86 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~lp~l~~~~~~lVi~P 86 (529)
.|+-+.+++|+|+|||... ++.-+. .|.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 4677889999999999543 344444 666655443
No 260
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.11 E-value=10 Score=37.88 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.+++||.++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 568999999999999999999999999999999999999999988888776 77888775
No 261
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.78 E-value=3.5 Score=43.28 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEcCCCchHHHH
Q 009675 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 39 ~r~~Q~~~i~~-~l~g~dvlv~apTGsGKTl~ 69 (529)
+.+.+..-+.. +..|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 55556555544 34678899999999999964
No 262
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.43 E-value=2.5 Score=38.41 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=39.8
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
+.++||.++++.-+.++++.+++. ++.+..++|+.+.....+ ...+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCH
Confidence 457999999999999988877653 678888999875443211 1134678999995
No 263
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.35 E-value=3.1 Score=32.75 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.6
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
++.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999999863
No 264
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=70.29 E-value=3.1 Score=33.37 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
++.++++||.+-..+...+..|++.|+.+..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999864
No 265
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.63 E-value=2.2 Score=40.72 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=30.4
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCCCcHH-HHHHHHHHH--cCCCEEEEcCCCchHHHHHH
Q 009675 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~fg~~~~r~~-Q~~~i~~~l--~g~dvlv~apTGsGKTl~~~ 71 (529)
...|.+++..+++.+.|++..- .|. ..+++..+- -.+.+++.+|.|+|||...-
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4567788888888888886432 122 122333321 12448999999999997543
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.48 E-value=3.2 Score=38.99 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+..+++.+|+|+|||....
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999997654
No 267
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.15 E-value=3 Score=41.18 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+-+++.+|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999654
No 268
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=68.79 E-value=3.9 Score=32.68 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l 292 (529)
++.+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999998889999999999999988888886
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.60 E-value=2.6 Score=37.22 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|+-+++++|+|+|||....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999996543
No 270
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=67.98 E-value=68 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEeC
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp~l~--~~~~~lVi~ 85 (529)
++-+.+.+++|+|||.... +..+. .+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4456678999999995433 33322 356666654
No 271
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=67.56 E-value=4.5 Score=42.20 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=50.2
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc-----cc-c-ccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-----~G-I-Dip~ 326 (529)
+.++||.++++.-+.++.+.+.+. ++.+..+||+.+...+...+. +..+|+|+|.-.- .+ + +..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 668999999999888888777664 899999999986554432221 2468999995321 11 2 4566
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 272
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=67.49 E-value=46 Score=30.65 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
.+++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999997643
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.10 E-value=3.2 Score=40.57 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+-+++.+|||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 346789999999996543
No 274
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.06 E-value=3.2 Score=41.37 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=17.1
Q ss_pred HHcCCCEEEEcCCCchHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~ 69 (529)
+..|..+++++|||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44688999999999999964
No 275
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.95 E-value=71 Score=32.40 Aligned_cols=41 Identities=27% Similarity=0.185 Sum_probs=23.8
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hh-cC-CCeEEEeC--cHHHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ-IP-AL-AK-PGIVLVVS--PLIALMENQV 95 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l-~~-~~~~lVi~--P~~~L~~q~~ 95 (529)
-+++++++|+|||.... +. .+ .. +.+++++. |.+..+.++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 46678999999996543 22 22 23 55666655 4444444443
No 276
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.79 E-value=3 Score=40.09 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
..+++.+|+|+|||....
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997653
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.51 E-value=3.1 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 278
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.06 E-value=24 Score=32.72 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.-+++.+++|+|||....
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999997554
No 279
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=66.03 E-value=9.1 Score=42.43 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=48.0
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----ccc-c-ccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-I-Dip~ 326 (529)
+.++||.|+++.-+.++.+.+++. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ...+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988877764 899999999987665433221 357899999532 122 3 4566
Q ss_pred ccEEEE
Q 009675 327 VRLVCH 332 (529)
Q Consensus 327 v~~VI~ 332 (529)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.39 E-value=48 Score=34.46 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=20.0
Q ss_pred CEEEEcCCCchHHHHHH-HH-Hhc-CCCeEEEeCc
Q 009675 55 DCFCLMPTGGGKSMCYQ-IP-ALA-KPGIVLVVSP 86 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp-~l~-~~~~~lVi~P 86 (529)
.+++++++|+|||.... |. .+. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 36678999999996543 22 122 2556666663
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.14 E-value=3.9 Score=39.89 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-+++.+|||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 282
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=64.99 E-value=23 Score=38.32 Aligned_cols=81 Identities=28% Similarity=0.247 Sum_probs=64.4
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~ 156 (529)
.+.++||.++++.-+....+.|...|+++..+++......+..+......+. .+++++|.. ...|+ +.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~--l~~Gl--------Di 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINL--LREGL--------DI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCC--CSTTC--------CC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecch--hhCCc--------cc
Confidence 4789999999999999999999999999999999999999988888888775 778888753 22231 22
Q ss_pred CCccEEEEecccc
Q 009675 157 GLLNLVAIDEAHC 169 (529)
Q Consensus 157 ~~l~~iViDEaH~ 169 (529)
..++++|+-+++.
T Consensus 512 p~v~lVi~~d~d~ 524 (661)
T 2d7d_A 512 PEVSLVAILDADK 524 (661)
T ss_dssp TTEEEEEETTTTC
T ss_pred CCCCEEEEeCccc
Confidence 3467788777765
No 283
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.90 E-value=15 Score=37.24 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
...+||.++++.-+....+.|...|+.+..+++.....++.........+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 344999999999999999999999999999999999999999999888876 77888875
No 284
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=64.82 E-value=5.4 Score=32.87 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=31.3
Q ss_pred ceEEEEe-CCcccHHHHHHHHHhCCCceEEecCCCCH
Q 009675 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLND 294 (529)
Q Consensus 259 ~~~IIf~-~s~~~~e~l~~~L~~~g~~~~~~h~~l~~ 294 (529)
.+++||| .+-..+...+..|+..|+.+..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57777889999999999999999999753
No 285
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=64.62 E-value=4.4 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.1
Q ss_pred ceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCC
Q 009675 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
.+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988889999999999999888889874
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.58 E-value=2.7 Score=39.86 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=15.6
Q ss_pred HcCCCEEEEcCCCchHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~ 69 (529)
..|.-+++++|||+|||..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH
T ss_pred CCCCEEEEECCCCccHHHH
Confidence 3566788999999999964
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.55 E-value=27 Score=33.20 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=19.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEeCc
Q 009675 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp~l~~~~~~lVi~P 86 (529)
.-+++.||+|+|||.....-+-......++|+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 347789999999997543222112223455554
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=64.46 E-value=3.8 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.085 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.++.+++.+|+|+|||....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56788999999999997654
No 289
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.33 E-value=34 Score=35.63 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.7
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEeCcH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~P~ 87 (529)
.|.-+++.+|+|+|||.... +..+ ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45667899999999995432 2222 235566777653
No 290
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=64.27 E-value=4.5 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-+.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 44556788775 45679999999764
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=64.26 E-value=3.4 Score=37.40 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|+-+++.+|+|+|||....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35667889999999997543
No 292
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=64.25 E-value=23 Score=38.34 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=63.5
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~ 156 (529)
.+.++||.++++.-+....+.|...|+++..+++......+..+......+. .+++++|.. ...|+ +.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~--l~~Gl--------Di 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINL--LREGL--------DI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCC--CCTTC--------CC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccCh--hhcCc--------cC
Confidence 5789999999999999999999999999999999999999998888888765 778888743 22231 22
Q ss_pred CCccEEEEecccc
Q 009675 157 GLLNLVAIDEAHC 169 (529)
Q Consensus 157 ~~l~~iViDEaH~ 169 (529)
..++++|+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 3466777766654
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=64.03 E-value=46 Score=33.78 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=23.0
Q ss_pred CEEEEcCCCchHHHHHH-HHHh--cCCCeEEEeC--cHHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQ 94 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~--P~~~L~~q~ 94 (529)
-+.+.+++|+|||.... +... ..+++++++. +.+..+.+|
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~q 144 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ 144 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHH
Confidence 45678999999996543 3222 2355666654 344444333
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.75 E-value=3.8 Score=40.35 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.9
Q ss_pred HHcCCCEEEEcCCCchHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~ 69 (529)
+..|+.+++.+|||+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999963
No 295
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.60 E-value=9.5 Score=45.77 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCc
Q 009675 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (529)
+-+.+.+|.|+|||...+- .+...++++++|.+--+|-... ++++|+...-
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~----------------------- 1485 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN----------------------- 1485 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG-----------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH-----------------------
Confidence 5688999999999975432 2334588999999877764432 5666654422
Q ss_pred ccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 009675 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (529)
Q Consensus 131 ~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH~~~~ 172 (529)
+++.-|+.- ...+..+..+...+.+++||||..-.+..
T Consensus 1486 --l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1486 --LLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --CEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred --eEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 333333311 22334445555667799999999888754
No 296
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.22 E-value=24 Score=28.14 Aligned_cols=110 Identities=14% Similarity=0.212 Sum_probs=61.7
Q ss_pred EEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc--ccccc-----ccCCccEEEEeC
Q 009675 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGI-----DRKDVRLVCHFN 334 (529)
Q Consensus 262 IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a--~~~GI-----Dip~v~~VI~~~ 334 (529)
+||.+..+....+...++..|..+..+.++.+.+.|.+-++.|....++|--.-+- |-..| -.|..+.|+...
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivt 85 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVT 85 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 55666666677777777788888888888888888888888887765554332221 11111 124444444333
Q ss_pred CC--CCHHHHHHHHcccCCCCCCceEEEEEecccHHHHHHHHHh
Q 009675 335 IP--KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (529)
Q Consensus 335 ~p--~s~~~y~Q~~GRagR~G~~g~~i~~~~~~d~~~~~~i~~~ 376 (529)
.. .-+..|+.++--- .-..++.|+..|-.+-+...+.
T Consensus 86 tddkewikdfieeaker-----gvevfvvynnkdddrrkeaqqe 124 (162)
T 2l82_A 86 TDDKEWIKDFIEEAKER-----GVEVFVVYNNKDDDRRKEAQQE 124 (162)
T ss_dssp CCCHHHHHHHHHHHHHT-----TCEEEEEEECSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhc-----CcEEEEEecCCCchhHHHHHHH
Confidence 21 1244555544221 1355666666665554444333
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=63.17 E-value=4.8 Score=40.39 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=26.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEeCcHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIA 89 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l---p~l~~~~~~lVi~P~~~ 89 (529)
.+.++++.+|||+|||..... -....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 467899999999999964322 12234677777777654
No 298
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=66.87 E-value=1.5 Score=38.34 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeC
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~t 137 (529)
++++||.++++.-+....+.|+..|+.+..+++......+.........+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999999999999999999999888888877777776664 6676666
No 299
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=62.60 E-value=96 Score=28.57 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCccccc----ChhhHHHHHhhhccCCccEEE
Q 009675 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVA 163 (529)
Q Consensus 88 ~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~----t~~~~~~l~~~~~~~~l~~iV 163 (529)
..++....+.+.+.|....+................+.... .+-++..|.... ....+..+.. ..+-+|+
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~ 104 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAM 104 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEE
Confidence 34555555667778887777766655555455555555443 444444443211 1122222222 2466777
Q ss_pred Eecccc---cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHHHHHHH---hccCCCeEEeccCCCCccEEEEE
Q 009675 164 IDEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES---LCLQNPLVLKSSFNRPNLFYEVR 237 (529)
Q Consensus 164 iDEaH~---~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~~i~~~---l~~~~~~~~~~~~~r~nl~~~v~ 237 (529)
+|-... +...+.|....-..+...........+.+++.............+ +.-... ...+.......
T Consensus 105 ~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~------~~~~~~~~~~~ 178 (298)
T 3tb6_A 105 INASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHREREL------FPSPDMIVTFT 178 (298)
T ss_dssp ESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTC------CCCGGGEEEEC
T ss_pred EecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCC------CCCcceEEEec
Confidence 774321 111223333333333333333455667777766553322222211 111100 00111111111
Q ss_pred ecCchhhHHHHHHHHHHhcCCc-eEEEEeCCcccHHHHHHHHHhCCCc
Q 009675 238 YKDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (529)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~-~~IIf~~s~~~~e~l~~~L~~~g~~ 284 (529)
...........+.++|+..++. ...|||.+...+..+.+.|++.|+.
T Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 179 TEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 1111111256677778776542 5678888888888888999888764
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=62.48 E-value=3 Score=37.96 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 009675 53 GRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (529)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 46688999999999853
No 301
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.36 E-value=8.4 Score=44.22 Aligned_cols=75 Identities=9% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-ccccc-cCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGID-RKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GID-ip~ 326 (529)
.+.++||.++|+.-+.++++.+++ .++ .+..+||+.+..++.+..+.+.+ .+|+|+|... ..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 355799999999999998888875 366 88999999999888777777666 8999999631 11121 456
Q ss_pred ccEEEEe
Q 009675 327 VRLVCHF 333 (529)
Q Consensus 327 v~~VI~~ 333 (529)
+++||.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777743
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=62.20 E-value=4.3 Score=35.61 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++.+++.+|+|+|||....
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578899999999997654
No 303
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.18 E-value=9.6 Score=34.77 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHH
Q 009675 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 24 ~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g----~dvlv~apTGsGKTl~~ 70 (529)
..+.+.|+ +-|+ .|-.+ ...+..++++ +.+++.+|.|+|||..+
T Consensus 28 ~~I~~~l~-yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLR-YQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHH-HTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHH-HcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555555 2243 35445 5566666665 24888999999999643
No 304
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.06 E-value=9.4 Score=48.03 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCCCCCcHHHHH-HH---HHHHcCCCEEEEcCCCchHHHHHHHH
Q 009675 22 EKEALVKLLRWHFGHAQFRDKQLD-AI---QAVLSGRDCFCLMPTGGGKSMCYQIP 73 (529)
Q Consensus 22 l~~~~~~~l~~~fg~~~~r~~Q~~-~i---~~~l~g~dvlv~apTGsGKTl~~~lp 73 (529)
+.+.+.+.+++ .|+. +.+.+.. ++ +.+...+.++++||||+|||.++..-
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 44556666665 4765 5555433 22 33445678999999999999987643
No 305
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=61.85 E-value=4.9 Score=33.06 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCceEEEEeCCccc--HHHHHHHHHhCCCceEEecCCCC
Q 009675 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~--~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
++.+++|||.+-.. +...+..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35689999999776 88999999999999888999863
No 306
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.80 E-value=2.7 Score=38.90 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=47.9
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----cc---ccccC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM---GIDRK 325 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~---GIDip 325 (529)
+.++||.++++.-+.++++.+.+. ++.+..++|+.....+ ......+..+|+|+|.-- .. +++..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 447999999999999999888764 6777777765322211 112235677899999421 11 35666
Q ss_pred CccEEEEe
Q 009675 326 DVRLVCHF 333 (529)
Q Consensus 326 ~v~~VI~~ 333 (529)
++++||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 77777643
No 307
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=61.68 E-value=14 Score=27.79 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.9
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
.++.+++|||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35678999999988899999999999986 5555 7754
No 308
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=61.34 E-value=9.4 Score=36.45 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 009675 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~l~~~fg~~~~r~~Q~~~i~~~l~g~dvlv~apTGsGKTl~~ 70 (529)
|+........+.++.-.+...+.|.+...-. ...++++.||+|+|||...
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~--------------~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK--------------NIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT--------------CCCCEEEESSSSSSHHHHH
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC--------------CCCeEEEECcCCcCHHHHH
Confidence 4443333344445555566666666532110 1235999999999999654
No 309
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.03 E-value=5.7 Score=38.99 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34556788774 55679999999764
No 310
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=60.99 E-value=5.2 Score=38.62 Aligned_cols=70 Identities=11% Similarity=-0.013 Sum_probs=48.6
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc-------cccccC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGIDRK 325 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-------~GIDip 325 (529)
+..+||.++|++-+.++++.++.. ++.+..++|+.+...+ .....+|+|+|.--- ..++..
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988887753 5677777777653221 145668999996321 246777
Q ss_pred CccEEEEeC
Q 009675 326 DVRLVCHFN 334 (529)
Q Consensus 326 ~v~~VI~~~ 334 (529)
+++++|.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888887533
No 311
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.79 E-value=4.6 Score=39.13 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+..+++.+|+|+|||....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35789999999999997654
No 312
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=60.68 E-value=9.7 Score=32.29 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCC-ceEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~ 293 (529)
++.++||||.+-..+...+..|...|+ .+..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456799999998888899999999999 5899999984
No 313
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.60 E-value=7.4 Score=36.98 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHH-HHHHHHcCC-----CEEEEcCCCchHHHHHH
Q 009675 23 KEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 23 ~~~~~~~l~~~fg~~~~r~~Q~~-~i~~~l~g~-----dvlv~apTGsGKTl~~~ 71 (529)
-..+.+.|+- -|+. |.+.. ++..+++++ .+++.+|.|+|||+.+.
T Consensus 72 ~n~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3466677754 4755 55543 467777764 48899999999998654
No 314
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.51 E-value=4.2 Score=40.18 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.||+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999997654
No 315
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.07 E-value=25 Score=38.86 Aligned_cols=73 Identities=5% Similarity=0.065 Sum_probs=53.5
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cc-----------
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG----------- 319 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~----------- 319 (529)
..+..++|.|+|+.-|.+.++.+.. .|+.+..+.||++.++|.... ..+|+|+|+- ++
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 3455799999999998888777654 599999999999987765542 3689999962 21
Q ss_pred -cccccCCccEEEEeC
Q 009675 320 -MGIDRKDVRLVCHFN 334 (529)
Q Consensus 320 -~GIDip~v~~VI~~~ 334 (529)
..++...++++|.-.
T Consensus 196 ~~~l~lr~~~~lVlDE 211 (844)
T 1tf5_A 196 KEQMVQRPLHFAVIDE 211 (844)
T ss_dssp GGGCCCCCCCEEEEET
T ss_pred hhhhcccCCCEEEECc
Confidence 125566777777543
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=60.04 E-value=4 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
+++.||+|+|||....
T Consensus 4 I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997554
No 317
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=59.69 E-value=6.8 Score=33.23 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCceEEEEeCCc--ccHHHHHHHHHhCCCceEEecCCCC
Q 009675 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~--~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
++.+++|||.+- ..+...+..|+..|+.+..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899999987 5788999999999999999999863
No 318
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=59.54 E-value=6 Score=31.49 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
.+.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4567999999988899999999999995 888889863
No 319
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=59.49 E-value=23 Score=39.22 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=51.8
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cc-----cc----
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----MG---- 321 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~-----~G---- 321 (529)
..+..++|.++|+.-|.+.++.+.. .|+.+..+.||++.+.|.... ..+|+|+|+. ++ .+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 3455799999999988887776654 589999999999987665433 3789999973 21 22
Q ss_pred ---cccCCccEEEE
Q 009675 322 ---IDRKDVRLVCH 332 (529)
Q Consensus 322 ---IDip~v~~VI~ 332 (529)
++..++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 44567777774
No 320
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.40 E-value=4.9 Score=36.36 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5777889999999999643
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=59.36 E-value=5.3 Score=35.33 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (529)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778999999999654
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=59.32 E-value=5 Score=37.69 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 009675 56 CFCLMPTGGGKSMCY 70 (529)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (529)
+++.+|||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999643
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.27 E-value=6 Score=34.14 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
++.+++.+|.|+|||...-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46788999999999975543
No 324
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=59.22 E-value=20 Score=37.85 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=53.0
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
.+..+||.++++.-+....+.|+.. ++.+..+++......+..+......+. .+++++|.-
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~~ 350 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDV 350 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcch
Confidence 3678999999999999999999886 889999999999999999998888876 778887753
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.19 E-value=6.2 Score=34.46 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.++.+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45779999999999997554
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.16 E-value=4.8 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|.-+.+.+|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666788999999999654
No 327
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.14 E-value=34 Score=35.75 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=53.2
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHHc---CCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
.+..+||.++++.-+....+.|... ++.+..+++......+..+......+. .+++++|.-
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~ 401 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDV 401 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcch
Confidence 4779999999999999999999886 889999999999999999999888876 778888753
No 328
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=59.10 E-value=6.3 Score=39.41 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||+|||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34456788775 45679999999763
No 329
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.04 E-value=6.4 Score=39.19 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
+++.+++|.++ |.-++||+|||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 44556788875 45679999999763
No 330
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.01 E-value=6.4 Score=39.04 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=17.7
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
++.+++|.++ |.-++||+|||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3456788775 55679999999764
No 331
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.00 E-value=5.7 Score=38.91 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-+++.+|||+|||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999996543
No 332
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=58.95 E-value=6.4 Score=39.29 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.++.|.++ |.-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 33456688775 55679999999764
No 333
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=58.90 E-value=6.4 Score=38.94 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=17.6
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
++.+++|.++ |.-++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 3456688775 55679999999763
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=58.84 E-value=4.3 Score=36.25 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+.+.+|+|+|||...-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778899999999996543
No 335
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=58.84 E-value=6.6 Score=39.04 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=18.7
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||+|||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 44566788875 55679999999764
No 336
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.73 E-value=4.8 Score=36.06 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHH
Q 009675 54 RDCFCLMPTGGGKSMC 69 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (529)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 337
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=58.70 E-value=5.9 Score=39.18 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=17.7
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
++.+++|.++ |.-++||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445678775 55679999999764
No 338
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=58.47 E-value=4.1 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.022 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
++-+++.++.|+|||....
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4557899999999997654
No 339
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.31 E-value=11 Score=37.46 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tp 138 (529)
.+.+||.++++.-+....+.|...++.+..+++......+..+......+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 568999999999999999999999999999999999999988888887765 67777775
No 340
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.25 E-value=5.2 Score=35.96 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (529)
..|+-+++.+|+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45678899999999999644
No 341
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=58.06 E-value=6.8 Score=38.49 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 45 ~~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
..+..+++|.++ |.-++||+|||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356677889875 55679999999764
No 342
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.64 E-value=5.9 Score=36.16 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.2
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (529)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788899999999999643
No 343
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.63 E-value=8.5 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
...+++.+|+|+|||....
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3689999999999997643
No 344
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=57.40 E-value=7.2 Score=36.66 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.3
Q ss_pred HcCCCEEEEcCCCchHHHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~l 72 (529)
+.|+.+++.++.|+|||....+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3489999999999999976543
No 345
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=57.35 E-value=6.5 Score=39.08 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=18.1
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||+|||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34456678775 55679999999764
No 346
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=57.24 E-value=8.1 Score=32.40 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCC-ceEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|.+.|+ .+..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999998889999999999999 5889999963
No 347
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.09 E-value=7.2 Score=38.65 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556788775 55679999999764
No 348
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=57.05 E-value=7.2 Score=38.95 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.+..+++|.++ |.-++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556788775 45679999999763
No 349
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.01 E-value=8 Score=39.14 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=19.8
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~~ 71 (529)
.+..+++|.++ |.-++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 55667889875 456799999998753
No 350
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.99 E-value=4.1 Score=38.25 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+.+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997543
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.84 E-value=6.2 Score=34.80 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.++.+++.+++|+|||....
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999997654
No 352
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.69 E-value=13 Score=47.35 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhcCCCCCcHHHHH-HHH---HHHcCCCEEEEcCCCchHHHHHHH--HHhcC----CCeEEEeCcH
Q 009675 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQ---AVLSGRDCFCLMPTGGGKSMCYQI--PALAK----PGIVLVVSPL 87 (529)
Q Consensus 22 l~~~~~~~l~~~fg~~~~r~~Q~~-~i~---~~l~g~dvlv~apTGsGKTl~~~l--p~l~~----~~~~lVi~P~ 87 (529)
+.+.+.+.+++ .|+. +.+.+.. +++ .+...+-++++||||+|||.|+.. -++.. .....++-|-
T Consensus 873 l~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 44556666665 4764 5565544 332 223456688999999999999863 33332 2234556664
No 353
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=56.62 E-value=6.7 Score=39.06 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=18.2
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.++.|.++ |.-++||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 44556688765 55679999999764
No 354
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=56.52 E-value=5.1 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|+-+++.+|.|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 355
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=56.52 E-value=6.7 Score=38.97 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=17.1
Q ss_pred HHHHcCCCE--EEEcCCCchHHHHH
Q 009675 48 QAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 48 ~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
..++.|.++ |.-++||+|||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 346678775 55679999999764
No 356
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=56.42 E-value=7 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988899999999999995 888999864
No 357
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=56.30 E-value=11 Score=30.15 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.4
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCC
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~ 293 (529)
.++.+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35668999999988899999999999987678889874
No 358
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.28 E-value=7.4 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=18.3
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.+..++.|.++ |.-+.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34556788764 55679999999764
No 359
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.27 E-value=6.7 Score=38.71 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-+++.+|||+|||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999654
No 360
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.50 E-value=4.8 Score=40.06 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.3
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (529)
.+.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344678999999999964
No 361
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=55.46 E-value=7.1 Score=39.07 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=17.6
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
++.+++|.++ |.-+.||+|||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 3446678775 55679999999764
No 362
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.25 E-value=7.9 Score=39.29 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 45 ~~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
..+..++.|.++ |.-++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 356778899875 45679999999764
No 363
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.00 E-value=9.2 Score=33.99 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEeCcH
Q 009675 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (529)
Q Consensus 56 vlv~apTGsGKTl~~~lp~l~~~~~~lVi~P~ 87 (529)
++|.+++|||||.-..--+.. +..++++..-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 589999999999644322333 5566776653
No 364
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.86 E-value=19 Score=35.30 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc------ccccccCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GIDip~ 326 (529)
.+.++||.++++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 455899999999999998888765 3688999999998776554443 46799999432 12345567
Q ss_pred ccEEEEeC
Q 009675 327 VRLVCHFN 334 (529)
Q Consensus 327 v~~VI~~~ 334 (529)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 78877533
No 365
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.84 E-value=7.4 Score=39.11 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=18.4
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.++.+++|.++ |.-++||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556788764 55679999999764
No 366
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.70 E-value=6.9 Score=33.57 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-+++.++.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997543
No 367
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=54.60 E-value=7 Score=34.21 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+.-+++.++.|+|||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5567899999999997543
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.49 E-value=5.5 Score=39.86 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (529)
.|.-+++++|||+|||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999964
No 369
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.44 E-value=8.9 Score=37.91 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=21.6
Q ss_pred CCEEEEcCCCchHHHH-HHHHHhc--C------CCeEEEeCc
Q 009675 54 RDCFCLMPTGGGKSMC-YQIPALA--K------PGIVLVVSP 86 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~-~~lp~l~--~------~~~~lVi~P 86 (529)
.-+.+.+|.|+|||.. .++.... . ++.++++.-
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4577899999999953 4444443 1 356677653
No 370
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.41 E-value=12 Score=38.48 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
.+++++.+|+|+|||....
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999997654
No 371
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=54.21 E-value=7.7 Score=32.09 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999974
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.78 E-value=5.9 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
+++.+++|||||....
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 6789999999997543
No 373
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=53.33 E-value=5.2 Score=34.92 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+.+++|.|+|||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35557789999999997544
No 374
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=53.29 E-value=17 Score=30.08 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988888999999999995 888889984
No 375
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.04 E-value=9.1 Score=34.10 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=35.5
Q ss_pred CceEEEEeCCcccHHH-HHHHHHh---CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 009675 258 DTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~-l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (529)
+.++||.|+++.-+++ +.+.+.. .++.+..++|+.....+...+. +..+|+|+|..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5689999999988877 5555544 4678899998765433221111 24679999853
No 376
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=53.01 E-value=7.9 Score=38.69 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.1
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.+..++.|.++ |.-++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 45667889875 45679999999764
No 377
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=52.86 E-value=6.9 Score=40.24 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||....
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 679999999999997653
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.74 E-value=7.5 Score=37.90 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
...+++.||+|+|||....
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999997654
No 379
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=52.69 E-value=9.3 Score=31.91 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|.+.|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988889999999999995 888999863
No 380
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.65 E-value=33 Score=38.25 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=53.1
Q ss_pred HhcCCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cc-----c---
Q 009675 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----M--- 320 (529)
Q Consensus 254 ~~~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~-----~--- 320 (529)
....+..++|.++|+.-|.+.++.+.. .|+++..+.||++.++|.... ..+|+++|+. ++ .
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 334456799999999988887776654 699999999999987776544 3689999963 21 1
Q ss_pred ----ccccCCccEEEE
Q 009675 321 ----GIDRKDVRLVCH 332 (529)
Q Consensus 321 ----GIDip~v~~VI~ 332 (529)
.++..++.++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 355567777774
No 381
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=52.61 E-value=8 Score=34.52 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|+-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999997543
No 382
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=52.19 E-value=8.1 Score=34.74 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.3
Q ss_pred HHHcCCCEEEEcCCCchHHHHH
Q 009675 49 AVLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 49 ~~l~g~dvlv~apTGsGKTl~~ 70 (529)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888889999999999654
No 383
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.05 E-value=9.5 Score=39.11 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=17.6
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
+..++.|.++ |.-+.||+|||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445688775 55679999999764
No 384
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=51.97 E-value=8.1 Score=32.23 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
.+.+++|||.+-..+...+..|+..|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988888999999999995 889999863
No 385
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.74 E-value=12 Score=32.88 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-+++.+|.|+|||...-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35789999999997544
No 386
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.53 E-value=7.3 Score=38.62 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=18.8
Q ss_pred HHHHHHcCCCE--EEEcCCCchHHHHHH
Q 009675 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (529)
Q Consensus 46 ~i~~~l~g~dv--lv~apTGsGKTl~~~ 71 (529)
.+..+++|.++ |.-++||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 44556678775 556799999998753
No 387
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.08 E-value=7.6 Score=39.29 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.4
Q ss_pred EEEEcCCCchHHHHH
Q 009675 56 CFCLMPTGGGKSMCY 70 (529)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (529)
++|.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999653
No 388
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=50.90 E-value=7 Score=35.84 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 009675 50 VLSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 50 ~l~g~dvlv~apTGsGKTl~~ 70 (529)
+-.|+-+.+++|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346777889999999999644
No 389
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.76 E-value=7.6 Score=38.45 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=17.8
Q ss_pred HHHHHcCCCE--EEEcCCCchHHHHHH
Q 009675 47 IQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (529)
Q Consensus 47 i~~~l~g~dv--lv~apTGsGKTl~~~ 71 (529)
+..+++|.++ |.-++||||||.+..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3345678775 556799999997653
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.67 E-value=6.4 Score=34.44 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+++.++.|||||....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34567899999999997554
No 391
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.53 E-value=7.5 Score=33.68 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
|+-+++.+|.|+|||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997543
No 392
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=50.49 E-value=84 Score=24.19 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=73.4
Q ss_pred EEEEeecCChhHHHHHHHHhccCCCeEEeccCCCCccEEEEEecCchhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHH
Q 009675 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (529)
Q Consensus 196 ii~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~ 275 (529)
++.+-.|-..+..+.|.+.. .|--|.++-....+.....+..+-....-.+++|..+.+.-..+.-
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 45666777777666655543 2334555554443444444555555566678999999988888888
Q ss_pred HHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 009675 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (529)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (529)
+.+++.|+.+..+--+.+..+-++.-....+..+.|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 88899999999998888887766666666666666665554
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.05 E-value=76 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=19.1
Q ss_pred CEEEEcCCCchHHHHHH-HHHh--cCCCeEEEeC
Q 009675 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~-lp~l--~~~~~~lVi~ 85 (529)
-+.+.+++|+|||.... +... ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678999999996433 3222 2355666554
No 394
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.72 E-value=11 Score=37.58 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=15.6
Q ss_pred cCCC--EEEEcCCCchHHHHHH
Q 009675 52 SGRD--CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~d--vlv~apTGsGKTl~~~ 71 (529)
.|.+ +|.-++||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 5778999999997643
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=49.71 E-value=7.6 Score=33.12 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q 009675 56 CFCLMPTGGGKSMC 69 (529)
Q Consensus 56 vlv~apTGsGKTl~ 69 (529)
.++.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999964
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.48 E-value=9.2 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
..+++.+|+|+|||....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 678999999999997544
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.41 E-value=14 Score=39.48 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHcCCCEEEEcCCCchHHHHHH
Q 009675 46 AIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 46 ~i~~~l~g~dvlv~apTGsGKTl~~~ 71 (529)
+-..+..|+.+++.+|+|+|||..+.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHH
Confidence 33445578999999999999997654
No 398
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.39 E-value=8.2 Score=38.81 Aligned_cols=30 Identities=30% Similarity=0.528 Sum_probs=21.7
Q ss_pred HHHHHHHHH--------HHcCCCE--EEEcCCCchHHHHH
Q 009675 41 DKQLDAIQA--------VLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 41 ~~Q~~~i~~--------~l~g~dv--lv~apTGsGKTl~~ 70 (529)
.-|.++++. +++|.++ |.-++||||||.+.
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 457777653 5678775 55679999999764
No 399
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=49.07 E-value=16 Score=39.43 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=50.7
Q ss_pred ceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----ccc-c-ccCCc
Q 009675 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKDV 327 (529)
Q Consensus 259 ~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-I-Dip~v 327 (529)
.++||.++++.-+.+..+.+++. |+.+..++|+.+...+...+. ...+|+|+|.-. ..| + +..++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999888888888764 789999999986543322221 247899999632 222 3 56678
Q ss_pred cEEEEeC
Q 009675 328 RLVCHFN 334 (529)
Q Consensus 328 ~~VI~~~ 334 (529)
++||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8888543
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.07 E-value=20 Score=34.95 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHHH
Q 009675 56 CFCLMPTGGGKSMCY 70 (529)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (529)
+.+.||+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999654
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.88 E-value=13 Score=34.99 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+.+++.+|+|+|||....
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 348999999999997543
No 402
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=48.75 E-value=39 Score=37.76 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=45.8
Q ss_pred HHhcCCceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 009675 253 LKANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (529)
Q Consensus 253 l~~~~~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (529)
+....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++.++|.... ..+|+|+|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3334455799999999888877766654 699999999999988776654 3789999964
No 403
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=48.64 E-value=35 Score=38.62 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=53.9
Q ss_pred CCCeEEEeCcHHHHHHHHHHHHHH-cCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeC
Q 009675 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (529)
Q Consensus 77 ~~~~~lVi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~t 137 (529)
.+.++||.++++.-+......|.. .|+++..+++..+...+..+......+...++++++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 478899999999999999999984 6999999999999999999998888876568898888
No 404
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=48.01 E-value=8.7 Score=34.26 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+.+.+|.|+|||....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35667789999999996543
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.74 E-value=6.4 Score=36.07 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.3
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566788999999999643
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=47.73 E-value=7.8 Score=38.62 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 407
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=47.54 E-value=9.2 Score=38.30 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=16.7
Q ss_pred HHHHcCCCE--EEEcCCCchHHHHH
Q 009675 48 QAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 48 ~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
..+++|.++ |.-++||+|||.+.
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 344578775 55679999999764
No 408
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=47.35 E-value=12 Score=32.47 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
+.+++.++.|+|||.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999976543
No 409
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=47.22 E-value=9.1 Score=33.51 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+.-+++.+++|||||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457889999999997654
No 410
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=47.16 E-value=49 Score=33.29 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-++++++.|+|||....
T Consensus 260 lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997543
No 411
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=47.10 E-value=24 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=44.8
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
++.+||++|++.-++...+.|++.+..+..+++. .+..+......+. .+++++|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 6789999999999999999999999999988875 3444556666665 788888754
No 412
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=47.09 E-value=7.5 Score=41.56 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
++++.||+|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999744
No 413
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=46.87 E-value=10 Score=33.68 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+-+++.|+.|+|||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 414
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=46.75 E-value=29 Score=33.09 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=51.5
Q ss_pred CceEEEEeCCcccHHHHHHHHHh----CCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----c-cccccCCc
Q 009675 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 327 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~-~GIDip~v 327 (529)
+.++||.++++.-+.++++.+++ .+..+..+||+.+....... +. ..+|+|+|... . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 45789999999999999998875 35788999999887654332 22 37899999532 1 22456677
Q ss_pred cEEEEeC
Q 009675 328 RLVCHFN 334 (529)
Q Consensus 328 ~~VI~~~ 334 (529)
++||.-.
T Consensus 131 ~~iViDE 137 (337)
T 2z0m_A 131 EIVIIDE 137 (337)
T ss_dssp SEEEEES
T ss_pred cEEEEEC
Confidence 7777433
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.67 E-value=8.4 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-.++++|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999754
No 416
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=46.63 E-value=11 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
..+.+.+|+|||||....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577899999999975543
No 417
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=46.63 E-value=13 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~ 293 (529)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999988888999999999995 888888853
No 418
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=46.19 E-value=11 Score=34.41 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+.-+++.+++|+|||....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34568899999999997554
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=45.97 E-value=9.9 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
+++.+|.|||||....
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997654
No 420
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=45.96 E-value=25 Score=33.16 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCCH
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~ 294 (529)
.+.++|+||.+-..+...+..|...|+. +..|.||+..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 4668999999988899999999999994 8999999863
No 421
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=45.95 E-value=27 Score=32.91 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=31.4
Q ss_pred CCCEEEE-cCCCchHHHHHH--HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcCCce
Q 009675 53 GRDCFCL-MPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (529)
Q Consensus 53 g~dvlv~-apTGsGKTl~~~--lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~gi~~ 105 (529)
|..+++. +|.|+|||++++ ...+.++.++++++-... ..+..+.++.+|+..
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~-~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP-LQLIIRILSRFGVDV 75 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHTTCCH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHHHHHHcCCCH
Confidence 4567787 455555556555 345677888888874322 244555666776643
No 422
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=45.92 E-value=11 Score=39.34 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 423
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=45.64 E-value=1.8e+02 Score=26.63 Aligned_cols=180 Identities=9% Similarity=0.027 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccCCccEEEEeccc
Q 009675 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (529)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (529)
.++....+.+.+.|....+................+.... .+-++..|... ....+. ......+-+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~----~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLR----TELPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHH----HSSCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHH----HhhccCCCEEEEeccc
Confidence 4455555666777887777666555555455555555443 44444444322 222222 2222346777777533
Q ss_pred c---cccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh-HHHHHH---HHhccCCCeEEeccCCCCccEEEEEecCc
Q 009675 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK-VQKDVM---ESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (529)
Q Consensus 169 ~---~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~-~~~~i~---~~l~~~~~~~~~~~~~r~nl~~~v~~~~~ 241 (529)
. +...+.|.......+...........+.+++...... ...... ..+.-.... ..+..... ....
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~------~~~~~~~~--~~~~ 169 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLP------VRQEWIAA--GGVR 169 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCC------CCGGGEEC------
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCC------CCHHHeEe--CCCC
Confidence 2 1112233333333333333334566788887765322 111111 111111100 00001100 0011
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCCc
Q 009675 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (529)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~~ 284 (529)
.......+.+++...+ ....|||.+...+..+.+.|++.|+.
T Consensus 170 ~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 170 ADNGRDGAIKVLTGAD-RPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp --CCHHHHHHHHTC-C-CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 1223445566665543 45678888888888888888887653
No 424
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.26 E-value=17 Score=32.30 Aligned_cols=19 Identities=16% Similarity=-0.192 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+.-+.+.+++|+|||....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4456789999999997543
No 425
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=45.17 E-value=12 Score=32.90 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+.-+++.++.|+|||....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668899999999997543
No 426
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=44.83 E-value=1.9e+02 Score=29.39 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=65.8
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcccccChhhHHHHHhhhccC
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe~v~t~~~~~~l~~~~~~~ 157 (529)
++..+|+...+.-+....+.|.+.+..+..+++......+..+......+. .+++++|+.++. .-.+..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~---------~GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFS---------TGISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHH---------HSCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhh---------cccccc
Confidence 455555555577777788888888888999999999988888888888775 678777744332 223444
Q ss_pred CccEEEEecccccccCCCCCHHHHHHHHHHHHhCC
Q 009675 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (529)
Q Consensus 158 ~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~ 192 (529)
.++.+|+..+. |+ ....+..+++.-+.-+
T Consensus 416 ~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 416 NLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred cCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 57788876665 22 3344556666655444
No 427
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=44.66 E-value=14 Score=37.74 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.5
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
++.+||++|++.-+....+.|+..++.+..+++. .+..+......+. .+++++|..
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~--~~vLVaT~v 232 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKK--PDFILATDI 232 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CC--CSEEEESSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCC--ceEEEECCh
Confidence 6789999999999999999999999999888873 2334455555554 778888753
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=44.53 E-value=12 Score=32.04 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (529)
+.+++.++.|||||.....
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4688999999999976554
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.48 E-value=14 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.-+++.++.|||||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 430
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=44.41 E-value=9.4 Score=33.45 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+.-+++.++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999997543
No 431
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=44.36 E-value=9.2 Score=34.25 Aligned_cols=18 Identities=17% Similarity=-0.201 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
|.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344678999999999654
No 432
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=44.20 E-value=9.8 Score=34.20 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=13.9
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
|.-+.+.+|+|+|||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678999999999543
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.20 E-value=11 Score=33.91 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (529)
.+++.+|.|+|||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999976543
No 434
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=44.14 E-value=13 Score=41.94 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=47.1
Q ss_pred CceEEEEeCCcccHHHHHHHHHhC----CCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc-----ccc-c-ccCC
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-I-Dip~ 326 (529)
+.++||.++++.-+.++.+.+++. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ...+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 667999999999988888777663 899999999987655432221 246899999532 112 2 4556
Q ss_pred ccEEEEe
Q 009675 327 VRLVCHF 333 (529)
Q Consensus 327 v~~VI~~ 333 (529)
+++||.-
T Consensus 372 ~~liViD 378 (936)
T 4a2w_A 372 FTLMIFD 378 (936)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7887743
No 435
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=44.13 E-value=14 Score=31.62 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
+-+++.++.|+|||....
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 436
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.96 E-value=20 Score=36.93 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
..++++.+|+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997543
No 437
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=43.52 E-value=15 Score=32.66 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=24.3
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~ 203 (529)
...+++++||+..+......| ...|..+... ..++|+-|.|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~---~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLF---IQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHH---HHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccHHH---HHHHHHHHhC--CCcEEEEEeec
Confidence 456899999987664322222 3455555554 34555546664
No 438
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=43.02 E-value=17 Score=31.94 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+.-+++.+++|+|||....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668899999999997543
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=42.95 E-value=10 Score=33.58 Aligned_cols=18 Identities=17% Similarity=-0.027 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (529)
.|+-+++.++.|+|||..
T Consensus 15 ~G~gvli~G~SGaGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL 32 (181)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 456789999999999954
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.87 E-value=17 Score=35.33 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHH-HHHhcCCCeEEEeCcH
Q 009675 56 CFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSPL 87 (529)
Q Consensus 56 vlv~apTGsGKTl~~~-lp~l~~~~~~lVi~P~ 87 (529)
+++.++.|+|||...- +..+..+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 5789999999996543 2333345566666664
No 441
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=42.84 E-value=15 Score=31.39 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.1
Q ss_pred CceEEEEeCCcc---------cHHHHHHHHHhCCCceEEecCCC
Q 009675 258 DTCAIVYCLERT---------TCDELSAYLSAGGISCAAYHAGL 292 (529)
Q Consensus 258 ~~~~IIf~~s~~---------~~e~l~~~L~~~g~~~~~~h~~l 292 (529)
+.++||||.+-. .+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 568999999873 47788999999999999999985
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=42.83 E-value=20 Score=33.43 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.-+++.|+.|+|||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347889999999997543
No 443
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=42.78 E-value=1.4e+02 Score=24.35 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
...+++++|--- .. ...+..+..++...|..|+|++|+......
T Consensus 46 ~~~dliild~~l--~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~ 89 (155)
T 1qkk_A 46 DFAGIVISDIRM--PG-----MDGLALFRKILALDPDLPMILVTGHGDIPM 89 (155)
T ss_dssp TCCSEEEEESCC--SS-----SCHHHHHHHHHHHCTTSCEEEEECGGGHHH
T ss_pred CCCCEEEEeCCC--CC-----CCHHHHHHHHHhhCCCCCEEEEECCCChHH
Confidence 347889988432 11 112356677788889999999998876543
No 444
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=42.75 E-value=13 Score=33.65 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+..+++.+|.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997554
No 445
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.66 E-value=13 Score=32.61 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.1
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999643
No 446
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.41 E-value=18 Score=45.64 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=17.3
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (529)
..++.++++||||+|||...
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 35789999999999999764
No 447
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=42.28 E-value=10 Score=37.76 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q 009675 56 CFCLMPTGGGKSMC 69 (529)
Q Consensus 56 vlv~apTGsGKTl~ 69 (529)
.++.+|||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999965
No 448
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.25 E-value=21 Score=38.51 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHc------CCceeEeccC--------ccHHHHHHHHHHhhcCCCcccEEEeC
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVT 137 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ll~~t 137 (529)
++++||.++++..+....+.|+.. |+.+..+++. .+..++..+......+. .+++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT 471 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIAT 471 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEc
Confidence 688999999999999999999886 8999999998 88888888888887765 6666665
No 449
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=42.01 E-value=13 Score=32.28 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
-+++.++.|+|||....
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997544
No 450
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=41.87 E-value=14 Score=32.23 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 009675 56 CFCLMPTGGGKSMCY 70 (529)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (529)
+++.++.|+|||...
T Consensus 4 I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 4 GIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999654
No 451
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=41.77 E-value=1.2e+02 Score=23.72 Aligned_cols=54 Identities=6% Similarity=0.083 Sum_probs=38.5
Q ss_pred ceEEEEeC------CcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEE
Q 009675 259 TCAIVYCL------ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (529)
Q Consensus 259 ~~~IIf~~------s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (529)
.+++||.. +...|..+...|.+.|+....+.-...++.+..+.+......+++|
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 35888876 5568999999999999998888877777666665544333344444
No 452
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=41.63 E-value=17 Score=38.34 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
|..+++.+|+|+|||....
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6679999999999997654
No 453
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.57 E-value=1.3e+02 Score=23.88 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCccEEEEecccccccCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhHHH
Q 009675 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (529)
Q Consensus 157 ~~l~~iViDEaH~~~~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~~~ 209 (529)
...+++++|- +.. ...+..+..++...+..|++++|+........
T Consensus 47 ~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (142)
T 2qxy_A 47 EKIDLVFVDV---FEG-----EESLNLIRRIREEFPDTKVAVLSAYVDKDLII 91 (142)
T ss_dssp SCCSEEEEEC---TTT-----HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHH
T ss_pred cCCCEEEEeC---CCC-----CcHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Confidence 3578999995 221 23346677788888999999999988765433
No 454
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=41.47 E-value=15 Score=32.39 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|+-+++.++.|+|||....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999997543
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=41.46 E-value=12 Score=36.19 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|+-+.+++|+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4677889999999999744
No 456
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=41.38 E-value=24 Score=33.30 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCceEEEEeCCcccHHHHHHHHHhCCC-ceEEecCCCC
Q 009675 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (529)
Q Consensus 248 ~l~~~l~~~~~~~~IIf~~s~~~~e~l~~~L~~~g~-~~~~~h~~l~ 293 (529)
.+...+...++.++++||.+-..+...+..|...|+ .+..+.||+.
T Consensus 171 ~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 171 YVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 333344445677899999998899999999999998 5888999874
No 457
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=41.36 E-value=15 Score=34.29 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
|.-+.+.+|+|+|||...-+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45678999999999976543
No 458
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=41.23 E-value=1.3e+02 Score=23.73 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=28.9
Q ss_pred CccEEEEecccccc-cCCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhH
Q 009675 158 LLNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (529)
Q Consensus 158 ~l~~iViDEaH~~~-~~g~~fr~~y~~l~~l~~~~~~~~ii~lSAT~~~~~ 207 (529)
..+++++|-.---. .-+ ...+..+..++...|..|++++|+......
T Consensus 47 ~~dlvi~d~~~~~~~~~~---~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~ 94 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNG---NEGLFWLHEIKRQYRDLPVVLFTAYADIDL 94 (140)
T ss_dssp CEEEEEEETTTTC--------CCHHHHHHHHHHHCTTCCEEEEEEGGGHHH
T ss_pred CCCEEEEeCCcCCCCCCC---ccHHHHHHHHHhhCcCCCEEEEECCCCHHH
Confidence 47889988431100 000 012355677788889999999998866543
No 459
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=41.15 E-value=16 Score=35.23 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEeC
Q 009675 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lp~l~--~~~~~lVi~ 85 (529)
|.-+.+++|+|+|||.... +..+. .++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456789999999996433 33222 245555543
No 460
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.05 E-value=15 Score=33.06 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+..+++.++.|||||....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999997543
No 461
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=40.96 E-value=12 Score=32.48 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|.-+++.++.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999754
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.82 E-value=15 Score=32.68 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (529)
.+.+.++.|+|||...-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 367899999999976543
No 463
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.76 E-value=92 Score=33.60 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=52.2
Q ss_pred HHHhcCCCeEEEeCcHHHHHHHHHHHHHHcC------------------------------------CceeEeccCccHH
Q 009675 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKG------------------------------------IAGEFLSSTQTMQ 115 (529)
Q Consensus 72 lp~l~~~~~~lVi~P~~~L~~q~~~~l~~~g------------------------------------i~~~~~~~~~~~~ 115 (529)
.-.+..++.+||.+|++.-+......|.... ..+..++++.+..
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 325 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKA 325 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHH
Confidence 3445568899999999999998888887642 1367789999999
Q ss_pred HHHHHHHHhhcCCCcccEEEeCcc
Q 009675 116 VKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 116 ~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
++..+......+. .+++++|..
T Consensus 326 ~r~~v~~~f~~g~--~~vlvaT~~ 347 (715)
T 2va8_A 326 LRDLIEEGFRQRK--IKVIVATPT 347 (715)
T ss_dssp HHHHHHHHHHTTC--SCEEEECGG
T ss_pred HHHHHHHHHHcCC--CeEEEEChH
Confidence 9998888888775 888888854
No 464
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=40.59 E-value=15 Score=32.69 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (529)
+.+.+|.|||||...-+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56899999999976543
No 465
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.38 E-value=11 Score=33.11 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.7
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999644
No 466
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=40.20 E-value=17 Score=32.28 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHHH
Q 009675 54 RDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (529)
.-+++.++.|+|||....
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997554
No 467
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.15 E-value=21 Score=41.23 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccccc-cccCCccEE
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRLV 330 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-IDip~v~~V 330 (529)
.+.++||.++++.-+.+.++.+.+..-.+..++|+.+ .+++.+|+|+|. .+..| ..+.++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999886558899999986 356789999993 34333 335567777
Q ss_pred EE
Q 009675 331 CH 332 (529)
Q Consensus 331 I~ 332 (529)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 468
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=40.06 E-value=1.3e+02 Score=23.49 Aligned_cols=57 Identities=5% Similarity=-0.060 Sum_probs=39.9
Q ss_pred CceEEEEeCC------cccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 009675 258 DTCAIVYCLE------RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (529)
Q Consensus 258 ~~~~IIf~~s------~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (529)
..+++||..+ ...|.++.+.|.+.|+....+.=...++.+..+.+......++.++-
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 3469999874 78899999999999998777765556666665554433344554443
No 469
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.84 E-value=14 Score=34.05 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|.-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4666789999999999643
No 470
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=39.63 E-value=13 Score=33.49 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999996543
No 471
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.28 E-value=13 Score=32.96 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-+++.++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999755
No 472
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.08 E-value=17 Score=30.93 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (529)
.+++.++.|||||....
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36789999999997544
No 473
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=38.99 E-value=16 Score=32.19 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=14.3
Q ss_pred CEEEEcCCCchHHHHHHH
Q 009675 55 DCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (529)
-+.+.+++|||||....+
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976544
No 474
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.59 E-value=17 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 009675 56 CFCLMPTGGGKSMCY 70 (529)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (529)
+++.++.|+|||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999644
No 475
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=38.50 E-value=15 Score=32.91 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=15.7
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 009675 51 LSGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (529)
..|.-+++.++.|+|||...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34566788999999999654
No 476
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=38.28 E-value=19 Score=39.27 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Q 009675 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (529)
Q Consensus 45 ~~i~~~l~g~dv--lv~apTGsGKTl~~ 70 (529)
..+..+++|.++ |.-+.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 367888899875 44579999999764
No 477
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.26 E-value=18 Score=33.04 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+..+++.+++|+|||....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997544
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.18 E-value=14 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.9
Q ss_pred CEEEEcCCCchHHHHH
Q 009675 55 DCFCLMPTGGGKSMCY 70 (529)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (529)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3578999999999653
No 479
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=37.98 E-value=16 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
|.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4557889999999997543
No 480
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=37.97 E-value=21 Score=36.46 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=46.6
Q ss_pred CceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-cccccc-c-CCccEEEE
Q 009675 258 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-R-KDVRLVCH 332 (529)
Q Consensus 258 ~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GID-i-p~v~~VI~ 332 (529)
+.++||.|+++.-+.++++.+.+.|+. +..+||+.+. ..+|+|+|.- +..-++ . .++++||.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIF 198 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEEE
Confidence 457999999999999999999988999 9999998752 4679999852 222222 1 34677774
No 481
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=37.85 E-value=21 Score=33.41 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred cCCceEEEEeCCcccHHHHHHHHHhCCCc-eEEecCCC
Q 009675 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 292 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~~e~l~~~L~~~g~~-~~~~h~~l 292 (529)
.++.++++||.+-..+...+..|...|+. +..|.||+
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 35678999999988888999999999995 88999986
No 482
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=37.82 E-value=1.5e+02 Score=25.33 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCceEEEEeCCcccHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccccccCCccEEEEeCCC
Q 009675 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (529)
Q Consensus 257 ~~~~~IIf~~s~~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GIDip~v~~VI~~~~p 336 (529)
+.+.+.|.|++...+..+.+.|...|+++..+..+-. ...-.|.|.|.-...|+-. +.||.+++.
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCB
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCC
Confidence 3556888899999999999999999998877765431 1223699999999999874 566766643
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=37.81 E-value=18 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|+-+++.+|+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999644
No 484
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=37.81 E-value=40 Score=29.36 Aligned_cols=14 Identities=14% Similarity=-0.000 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHHH
Q 009675 56 CFCLMPTGGGKSMC 69 (529)
Q Consensus 56 vlv~apTGsGKTl~ 69 (529)
+.+.++.|+|||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56889999999953
No 485
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.65 E-value=14 Score=34.12 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+..+++.+|.|+|||....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468899999999997544
No 486
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.55 E-value=13 Score=32.17 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=11.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQI 72 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (529)
+.-+++.++.|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999976543
No 487
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=37.52 E-value=18 Score=33.36 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
+.-+++.+|.|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999744
No 488
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=37.48 E-value=18 Score=32.68 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHHH
Q 009675 56 CFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (529)
+++.+|+||||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999986443
No 489
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.35 E-value=18 Score=32.60 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
+..+++.++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3557889999999997544
No 490
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=37.27 E-value=16 Score=32.32 Aligned_cols=20 Identities=25% Similarity=0.013 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (529)
.+.-+++.++.|+|||....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34557889999999997543
No 491
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=37.24 E-value=17 Score=33.65 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMC 69 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (529)
.|.-+.+.+|.|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999964
No 492
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.17 E-value=19 Score=32.98 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
.+-+++.+|+||||+...
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 355778999999998644
No 493
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=37.16 E-value=65 Score=28.62 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCC--CEEEEcCCCchHHHHHH---HHHh-cCCCeEEEeCcHHHHHH
Q 009675 41 DKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ---IPAL-AKPGIVLVVSPLIALME 92 (529)
Q Consensus 41 ~~Q~~~i~~~l~g~--dvlv~apTGsGKTl~~~---lp~l-~~~~~~lVi~P~~~L~~ 92 (529)
+.|..++..++..+ -.+|.++-|++|+.... +.+- ..+..+.+++|+..-..
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHH
Confidence 56889998887543 34678899999997632 2222 34778999999866533
No 494
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=37.12 E-value=34 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=31.5
Q ss_pred cCCceEEEEeCCccc-HHHHHHHHHhCCC-ceEEecCCCC
Q 009675 256 NGDTCAIVYCLERTT-CDELSAYLSAGGI-SCAAYHAGLN 293 (529)
Q Consensus 256 ~~~~~~IIf~~s~~~-~e~l~~~L~~~g~-~~~~~h~~l~ 293 (529)
.++.++||||.+-.. +..++..|+..|+ .+..+.||+.
T Consensus 84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356789999998665 8899999999999 5889999863
No 495
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=37.02 E-value=18 Score=32.11 Aligned_cols=19 Identities=21% Similarity=0.020 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.++-+++.++.|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3556789999999999754
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.80 E-value=28 Score=38.24 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCYQ 71 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (529)
..++++.+|+|+|||....
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997654
No 497
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=36.66 E-value=34 Score=37.07 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCeEEEeCcHHHHHHHHHHHHHHcCCceeEeccCccHHHHHHHHHHhhcCCCcccEEEeCcc
Q 009675 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (529)
Q Consensus 78 ~~~~lVi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~tpe 139 (529)
++.+||++|++.-++...+.|+..++.+..+++. ++..+......+. .+++++|..
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~--~~VLVaTdv 465 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD--WDFVITTDI 465 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC--CSEEEECGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC--ceEEEECch
Confidence 6789999999999999999999999999999873 4455566666654 788888753
No 498
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.66 E-value=20 Score=32.57 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 009675 52 SGRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (529)
.|.-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999643
No 499
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=36.59 E-value=29 Score=32.71 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHh---cCCceEEEEeCCcccHHHHHHHHH-hCCC-ceEEecCCC
Q 009675 248 DLCSVLKA---NGDTCAIVYCLERTTCDELSAYLS-AGGI-SCAAYHAGL 292 (529)
Q Consensus 248 ~l~~~l~~---~~~~~~IIf~~s~~~~e~l~~~L~-~~g~-~~~~~h~~l 292 (529)
.+.+.+.. ..+.++||||.+-..+...+..|. ..|+ .+..|.||+
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 34444443 346689999999878888889999 8999 688999986
No 500
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=36.58 E-value=18 Score=34.83 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 009675 53 GRDCFCLMPTGGGKSMCY 70 (529)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (529)
++-+.+++|+|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345778999999999654
Done!