Query 009676
Match_columns 529
No_of_seqs 297 out of 1154
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 7.4E-16 2.5E-20 129.1 6.5 59 332-390 5-64 (82)
2 4h10_B Circadian locomoter out 99.6 2E-15 6.7E-20 123.7 6.9 59 331-389 6-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 3.8E-15 1.3E-19 132.8 7.3 62 329-390 23-88 (118)
4 1a0a_A BHLH, protein (phosphat 99.5 1.5E-15 5.3E-20 121.5 3.6 53 334-386 3-62 (63)
5 4h10_A ARYL hydrocarbon recept 99.5 1.4E-15 4.9E-20 125.1 3.4 55 329-383 5-63 (73)
6 1an4_A Protein (upstream stimu 99.5 1.3E-15 4.4E-20 121.9 2.1 52 334-385 6-63 (65)
7 1hlo_A Protein (transcription 99.5 6.7E-14 2.3E-18 116.4 6.3 58 333-390 12-71 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 7.6E-14 2.6E-18 116.6 6.3 57 334-390 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.7E-13 5.6E-18 116.4 6.3 56 334-389 7-65 (88)
10 3u5v_A Protein MAX, transcript 99.4 2.6E-13 8.9E-18 112.4 5.2 57 334-390 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 2.6E-12 9E-17 107.3 6.9 57 334-390 2-61 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 4.2E-11 1.4E-15 97.3 4.7 52 334-385 13-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 1.2E-10 4.2E-15 92.3 5.8 52 335-386 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 2.2E-10 7.5E-15 117.2 6.2 53 333-385 12-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 5.5E-10 1.9E-14 115.7 5.5 54 330-383 10-67 (387)
16 2lfh_A DNA-binding protein inh 98.7 7E-09 2.4E-13 84.1 2.7 46 338-383 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 3.3E-08 1.1E-12 83.0 6.2 45 344-388 3-51 (83)
18 4aya_A DNA-binding protein inh 98.2 2.9E-06 9.8E-11 73.3 7.1 50 341-390 33-85 (97)
19 3muj_A Transcription factor CO 54.7 15 0.00052 33.4 5.0 35 347-381 95-133 (138)
20 2wt7_A Proto-oncogene protein 25.2 1.3E+02 0.0044 23.2 5.4 15 342-356 2-16 (63)
21 2kss_A Carotenogenesis protein 22.5 27 0.00093 29.4 1.0 25 78-106 69-97 (106)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.60 E-value=7.4e-16 Score=129.07 Aligned_cols=59 Identities=32% Similarity=0.467 Sum_probs=55.5
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 332 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 332 ~~~~~H~~~ERrRRerIN~~~~~Lr~LVP~~-~K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
..+..|+++||+||++||++|.+|+.|||.+ .|++|++||.+||+||++||.+++.|..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998 7999999999999999999999999875
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=123.68 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=53.9
Q ss_pred chhhhccchhHHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHh
Q 009676 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQVMW 389 (529)
Q Consensus 331 ~~~~~~H~~~ERrRRerIN~~~~~Lr~LVP~~-~K~dKAsIL~~AI~YIk~Lq~qv~~L~ 389 (529)
...+.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||+.||.++.-|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34567899999999999999999999999975 599999999999999999999988775
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.56 E-value=3.8e-15 Score=132.76 Aligned_cols=62 Identities=34% Similarity=0.580 Sum_probs=50.8
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 329 rr~~~~~~H~~~ERrRRerIN~~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
++++++..|+++||+||++||++|.+|+.|||.|. |++|++||++||+||++||.+++.|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999999999999985 678999999999999999999999864
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.55 E-value=1.5e-15 Score=121.52 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=48.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCC-------CCCchhhHHHHHHHHHHHHHHHHH
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 386 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~-------~K~dKAsIL~~AI~YIk~Lq~qv~ 386 (529)
+.+|+++||+||++||..|.+|+.|||.+ .|++||+||++||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999976 467899999999999999998753
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=125.13 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=50.5
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHHHH
Q 009676 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQL 383 (529)
Q Consensus 329 rr~~~~~~H~~~ERrRRerIN~~~~~Lr~LVP~~----~K~dKAsIL~~AI~YIk~Lq~ 383 (529)
+.++++..|+++||+||++||+.|.+|+.|||.| .|+|||+||+.||+|||.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4556678999999999999999999999999987 699999999999999999974
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=1.3e-15 Score=121.90 Aligned_cols=52 Identities=35% Similarity=0.570 Sum_probs=48.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCCC------CCchhhHHHHHHHHHHHHHHHH
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQL 385 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~~------K~dKAsIL~~AI~YIk~Lq~qv 385 (529)
+..|+++||+||++||+.|.+|+.|||.|. |++|++||++||+||++||+++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999986 7899999999999999999865
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=6.7e-14 Score=116.38 Aligned_cols=58 Identities=29% Similarity=0.521 Sum_probs=54.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 333 ~~~~H~~~ERrRRerIN~~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||+.|+.+++.|..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987 5999999999999999999999999864
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.45 E-value=7.6e-14 Score=116.63 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=53.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
+..|+..||+||++||+.|..|+.+||.+ .|++|++||.+||+||+.|+.+++.|+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999985 6999999999999999999999888764
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.7e-13 Score=116.38 Aligned_cols=56 Identities=32% Similarity=0.503 Sum_probs=52.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHh
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMW 389 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIk~Lq~qv~~L~ 389 (529)
+..||..||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+++.|.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999976 599999999999999999999988765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=2.6e-13 Score=112.43 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=50.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCC---CCCC-chhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPH---CNKT-DKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~---~~K~-dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
+..||..||+||++||++|.+|+.+||. ..|. +|+.||..||+||++|++++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999999995 3465 7999999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=2.6e-12 Score=107.28 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=52.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
+..||..||+||+.||++|..|+++||.+ .|++|+.||.+||+||+.|+++.+.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999965 5899999999999999999999887753
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.11 E-value=4.2e-11 Score=97.25 Aligned_cols=52 Identities=29% Similarity=0.481 Sum_probs=48.0
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHH
Q 009676 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQL 385 (529)
Q Consensus 334 ~~~H~~~ERrRRerIN~~~~~Lr~LVP~~--~K~dKAsIL~~AI~YIk~Lq~qv 385 (529)
+..||..||+|+..||+.|..||.+||.. .|++|+.||..||+||++|++.+
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999975 58999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.07 E-value=1.2e-10 Score=92.30 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=47.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 009676 335 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (529)
Q Consensus 335 ~~H~~~ERrRRerIN~~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIk~Lq~qv~ 386 (529)
..||..||+|+..||+.|..||.+||.. .|++|+.||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999975 489999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=2.2e-10 Score=117.24 Aligned_cols=53 Identities=28% Similarity=0.539 Sum_probs=42.9
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhCC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 009676 333 AAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQL 385 (529)
Q Consensus 333 ~~~~H~~~ERrRRerIN~~~~~Lr~LVP-~~~K~dKAsIL~~AI~YIk~Lq~qv 385 (529)
++..|+++||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3457999999999999999999999999 5569999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.93 E-value=5.5e-10 Score=115.72 Aligned_cols=54 Identities=35% Similarity=0.525 Sum_probs=48.7
Q ss_pred cchhhhccchhHHHHHHHHHHHHHHHHhhCC----CCCCCchhhHHHHHHHHHHHHHH
Q 009676 330 RSRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQL 383 (529)
Q Consensus 330 r~~~~~~H~~~ERrRRerIN~~~~~Lr~LVP----~~~K~dKAsIL~~AI~YIk~Lq~ 383 (529)
.+.++++|+.+||+||+|||+.|.+|+.||| ...|+||++||+.||+|||.|+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3455779999999999999999999999999 45799999999999999999984
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.67 E-value=7e-09 Score=84.09 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHH
Q 009676 338 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 383 (529)
Q Consensus 338 ~~~ERrRRerIN~~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIk~Lq~ 383 (529)
+..||+|+..||+.|..||.+||.. .|++|..||..||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999976 589999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.64 E-value=3.3e-08 Score=83.04 Aligned_cols=45 Identities=31% Similarity=0.584 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHH
Q 009676 344 RRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQVM 388 (529)
Q Consensus 344 RRerIN~~~~~Lr~LVP~~~----K~dKAsIL~~AI~YIk~Lq~qv~~L 388 (529)
-|++||++|.+|..|||.+. |.+|++||.+||+||++||++++.+
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999874 6899999999999999998876655
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.18 E-value=2.9e-06 Score=73.27 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhc
Q 009676 341 ERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQVMWM 390 (529)
Q Consensus 341 ERrRRerIN~~~~~Lr~LVP~~---~K~dKAsIL~~AI~YIk~Lq~qv~~L~~ 390 (529)
||.|-..||+.|..||.+||.. .|+.|..+|..||+||+.|++.++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677788999999999999965 4899999999999999999998876554
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=54.74 E-value=15 Score=33.37 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHH
Q 009676 347 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 381 (529)
Q Consensus 347 rIN~~~~~Lr~LVP~~----~K~dKAsIL~~AI~YIk~L 381 (529)
.|+-.|..|+++||.. .++-|-.||++|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4889999999999976 4788999999999999876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.19 E-value=1.3e+02 Score=23.19 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 009676 342 RRRRDRINEKMRALQ 356 (529)
Q Consensus 342 RrRRerIN~~~~~Lr 356 (529)
|++|.+..+++.+.+
T Consensus 2 kr~rrrerNR~AA~r 16 (63)
T 2wt7_A 2 KRRIRRERNKMAAAK 16 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHH
Confidence 344444444444443
No 21
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=22.45 E-value=27 Score=29.37 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=17.3
Q ss_pred ccccccccccccCCCCCccc----chhhhhccc
Q 009676 78 LIQDDETVSWIHCPIEDSFE----KDFYSQLFS 106 (529)
Q Consensus 78 ~~QedE~~~Wl~ypldD~le----~D~~Sdll~ 106 (529)
|+=|| +|++|| +|+|= +.+-.|||.
T Consensus 69 lvfdd---p~~qyp-~dpli~v~v~glgedlff 97 (106)
T 2kss_A 69 LVFDD---PATQYP-DDPLIQVLVEGLGEDLFF 97 (106)
T ss_dssp CCCCC---CTTCSS-SSSSCEEEETTSCEEECC
T ss_pred EEeCC---chhhCC-CCceeEEEEeccccceec
Confidence 44455 899999 67663 566677776
Done!