Query 009678
Match_columns 529
No_of_seqs 292 out of 2910
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 16:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 7.3E-58 1.6E-62 471.0 50.8 511 16-526 52-563 (567)
2 TIGR02731 phytoene_desat phyto 100.0 4.1E-47 9E-52 386.6 45.8 446 59-507 1-452 (453)
3 TIGR02732 zeta_caro_desat caro 100.0 4.6E-43 1E-47 354.8 44.3 442 59-508 1-474 (474)
4 PLN02487 zeta-carotene desatur 100.0 1.7E-42 3.6E-47 352.0 46.9 452 56-516 74-558 (569)
5 PRK07233 hypothetical protein; 100.0 1.3E-37 2.8E-42 316.7 40.9 424 59-512 1-432 (434)
6 COG3349 Uncharacterized conser 100.0 1.7E-37 3.7E-42 299.4 29.1 450 58-516 1-468 (485)
7 PRK12416 protoporphyrinogen ox 100.0 1.3E-36 2.8E-41 310.4 35.7 422 58-512 2-462 (463)
8 TIGR00562 proto_IX_ox protopor 100.0 1.3E-35 2.8E-40 303.8 36.5 418 57-512 2-461 (462)
9 PLN02268 probable polyamine ox 100.0 1.2E-36 2.5E-41 308.4 28.2 412 58-511 1-434 (435)
10 PRK11883 protoporphyrinogen ox 100.0 1.9E-35 4.2E-40 302.1 35.2 416 58-509 1-450 (451)
11 PLN02576 protoporphyrinogen ox 100.0 1.1E-35 2.4E-40 306.5 32.8 426 54-512 9-488 (496)
12 TIGR03467 HpnE squalene-associ 100.0 2.4E-34 5.2E-39 291.5 40.6 414 71-508 1-418 (419)
13 COG1231 Monoamine oxidase [Ami 100.0 1.4E-35 3.1E-40 280.2 27.5 428 55-512 5-448 (450)
14 PLN02676 polyamine oxidase 100.0 1.2E-34 2.6E-39 293.5 30.7 421 55-513 24-475 (487)
15 COG1232 HemY Protoporphyrinoge 100.0 2.2E-34 4.8E-39 280.0 31.3 409 58-508 1-443 (444)
16 PRK07208 hypothetical protein; 100.0 1E-33 2.3E-38 290.5 37.5 424 56-511 3-461 (479)
17 KOG0029 Amine oxidase [Seconda 100.0 1.6E-34 3.4E-39 288.4 28.7 423 54-514 12-462 (501)
18 PLN02529 lysine-specific histo 100.0 1.2E-33 2.6E-38 292.5 34.2 418 55-514 158-601 (738)
19 TIGR02733 desat_CrtD C-3',4' d 100.0 1.7E-32 3.7E-37 281.9 39.2 432 57-510 1-491 (492)
20 PLN02568 polyamine oxidase 100.0 4.5E-33 9.9E-38 283.5 31.9 439 56-512 4-536 (539)
21 PLN03000 amine oxidase 100.0 6.1E-33 1.3E-37 287.6 29.6 419 56-517 183-629 (881)
22 TIGR02734 crtI_fam phytoene de 100.0 8.8E-32 1.9E-36 277.5 35.4 431 60-513 1-494 (502)
23 PLN02328 lysine-specific histo 100.0 4E-32 8.6E-37 282.2 32.3 421 55-517 236-685 (808)
24 TIGR02730 carot_isom carotene 100.0 4.3E-31 9.3E-36 270.9 38.5 432 58-511 1-492 (493)
25 PLN02976 amine oxidase 100.0 1.4E-31 2.9E-36 284.0 33.1 420 55-514 691-1189(1713)
26 KOG0685 Flavin-containing amin 100.0 1.9E-31 4.2E-36 251.7 26.8 425 55-516 19-496 (498)
27 PF01593 Amino_oxidase: Flavin 100.0 2.2E-32 4.8E-37 279.5 12.6 428 67-508 1-450 (450)
28 KOG1276 Protoporphyrinogen oxi 100.0 2.9E-27 6.2E-32 219.7 26.6 425 54-508 8-490 (491)
29 COG1233 Phytoene dehydrogenase 100.0 1.4E-26 3E-31 235.3 27.1 425 56-511 2-483 (487)
30 COG2907 Predicted NAD/FAD-bind 99.9 1.3E-25 2.9E-30 202.7 21.2 283 55-360 6-301 (447)
31 COG3380 Predicted NAD/FAD-depe 99.9 1.7E-25 3.8E-30 195.5 12.5 323 58-511 2-331 (331)
32 KOG4254 Phytoene desaturase [C 99.9 3.3E-23 7.1E-28 193.5 27.5 241 259-514 252-549 (561)
33 PRK13977 myosin-cross-reactive 99.9 7.9E-20 1.7E-24 182.5 29.8 429 54-509 19-522 (576)
34 TIGR03329 Phn_aa_oxid putative 99.8 6.5E-19 1.4E-23 179.2 17.2 57 271-331 182-238 (460)
35 PTZ00363 rab-GDP dissociation 99.8 6.1E-17 1.3E-21 160.9 24.1 259 55-327 2-287 (443)
36 TIGR01373 soxB sarcosine oxida 99.8 2.7E-17 5.8E-22 165.5 19.1 201 271-509 182-384 (407)
37 PRK00711 D-amino acid dehydrog 99.7 1.6E-16 3.6E-21 160.5 21.0 202 271-510 200-402 (416)
38 PF01266 DAO: FAD dependent ox 99.7 4.9E-18 1.1E-22 168.3 5.7 60 271-332 146-205 (358)
39 TIGR01377 soxA_mon sarcosine o 99.7 4.7E-16 1E-20 155.4 19.6 57 271-330 144-200 (380)
40 PRK12409 D-amino acid dehydrog 99.7 1.4E-15 3.1E-20 153.2 20.4 204 271-510 196-406 (410)
41 PRK11259 solA N-methyltryptoph 99.7 2.3E-15 5E-20 150.1 19.2 203 271-510 148-360 (376)
42 COG0665 DadA Glycine/D-amino a 99.6 2.8E-14 6.1E-19 143.0 20.0 209 271-512 155-369 (387)
43 KOG2820 FAD-dependent oxidored 99.6 2.1E-14 4.5E-19 130.5 16.3 64 271-334 152-216 (399)
44 COG2081 Predicted flavoprotein 99.6 7.2E-15 1.6E-19 137.9 12.7 170 56-334 2-171 (408)
45 PF06100 Strep_67kDa_ant: Stre 99.6 3.3E-13 7.1E-18 131.0 24.4 252 57-330 2-274 (500)
46 PRK01747 mnmC bifunctional tRN 99.6 3.1E-14 6.7E-19 151.3 18.8 58 271-331 407-464 (662)
47 PRK11101 glpA sn-glycerol-3-ph 99.6 1.2E-12 2.5E-17 135.6 28.1 59 271-330 148-211 (546)
48 TIGR03364 HpnW_proposed FAD de 99.6 4.3E-14 9.3E-19 140.3 15.6 54 271-331 144-198 (365)
49 TIGR00031 UDP-GALP_mutase UDP- 99.6 8.2E-13 1.8E-17 128.4 23.6 236 58-330 2-247 (377)
50 COG0579 Predicted dehydrogenas 99.6 1.4E-14 2.9E-19 140.9 9.8 62 271-333 152-214 (429)
51 PF13450 NAD_binding_8: NAD(P) 99.5 7.9E-15 1.7E-19 105.4 5.7 66 62-128 1-68 (68)
52 PRK11728 hydroxyglutarate oxid 99.5 2.3E-13 4.9E-18 136.2 17.9 57 271-330 148-204 (393)
53 PRK10157 putative oxidoreducta 99.5 6.5E-13 1.4E-17 133.7 19.8 55 274-330 110-164 (428)
54 PRK10015 oxidoreductase; Provi 99.5 8.7E-12 1.9E-16 125.4 25.8 54 274-329 110-163 (429)
55 PF03486 HI0933_like: HI0933-l 99.5 4.2E-14 9.1E-19 139.2 6.8 61 271-332 108-168 (409)
56 PLN02464 glycerol-3-phosphate 99.5 1.3E-11 2.9E-16 129.2 24.6 60 271-330 231-296 (627)
57 PTZ00383 malate:quinone oxidor 99.5 2E-13 4.4E-18 137.9 10.1 61 271-333 210-276 (497)
58 COG0644 FixC Dehydrogenases (f 99.4 6.5E-11 1.4E-15 118.3 24.6 56 273-329 96-151 (396)
59 COG0578 GlpA Glycerol-3-phosph 99.4 8.1E-11 1.8E-15 117.1 24.4 60 271-332 163-227 (532)
60 PRK12266 glpD glycerol-3-phosp 99.4 9.4E-11 2E-15 120.5 25.4 58 271-330 154-216 (508)
61 PRK13369 glycerol-3-phosphate 99.4 4.3E-11 9.2E-16 123.2 22.6 58 271-330 154-215 (502)
62 PRK08773 2-octaprenyl-3-methyl 99.4 6.1E-11 1.3E-15 118.8 23.2 57 272-330 113-169 (392)
63 PRK07121 hypothetical protein; 99.4 2.6E-11 5.6E-16 124.8 19.0 60 271-330 176-239 (492)
64 TIGR01988 Ubi-OHases Ubiquinon 99.4 3E-10 6.6E-15 113.7 24.9 56 272-329 106-162 (385)
65 PRK07364 2-octaprenyl-6-methox 99.3 5.4E-10 1.2E-14 113.0 26.7 38 55-92 16-53 (415)
66 PRK05257 malate:quinone oxidor 99.3 5E-12 1.1E-16 128.4 10.9 61 271-332 182-248 (494)
67 TIGR02032 GG-red-SF geranylger 99.3 6.9E-10 1.5E-14 106.7 25.4 57 272-330 91-148 (295)
68 PRK05714 2-octaprenyl-3-methyl 99.3 6.9E-10 1.5E-14 111.8 26.3 62 273-336 113-175 (405)
69 PRK04176 ribulose-1,5-biphosph 99.3 1.6E-11 3.5E-16 113.9 13.2 41 56-96 24-64 (257)
70 TIGR01320 mal_quin_oxido malat 99.3 3E-12 6.4E-17 130.0 8.9 59 271-330 177-240 (483)
71 PRK05192 tRNA uridine 5-carbox 99.3 6E-11 1.3E-15 120.6 17.9 59 273-333 101-160 (618)
72 TIGR00292 thiazole biosynthesi 99.3 2.4E-11 5.3E-16 112.3 13.9 41 56-96 20-60 (254)
73 KOG2853 Possible oxidoreductas 99.3 2.1E-10 4.5E-15 104.6 19.2 37 55-91 84-124 (509)
74 PF00996 GDI: GDP dissociation 99.3 1.9E-10 4.1E-15 113.1 20.5 252 55-324 2-283 (438)
75 KOG2844 Dimethylglycine dehydr 99.3 2.6E-12 5.6E-17 126.7 7.3 58 271-330 186-243 (856)
76 TIGR01984 UbiH 2-polyprenyl-6- 99.3 7.6E-10 1.6E-14 110.7 25.3 63 271-335 104-168 (382)
77 PRK06184 hypothetical protein; 99.3 7.1E-10 1.5E-14 114.6 25.4 62 274-335 111-174 (502)
78 COG1635 THI4 Ribulose 1,5-bisp 99.3 2.2E-11 4.7E-16 104.5 11.5 41 56-96 29-69 (262)
79 PRK06481 fumarate reductase fl 99.3 8.7E-11 1.9E-15 120.8 18.2 58 272-330 190-251 (506)
80 PRK07045 putative monooxygenas 99.3 5.1E-10 1.1E-14 112.0 23.2 61 273-333 107-169 (388)
81 PRK06847 hypothetical protein; 99.3 2.2E-10 4.7E-15 114.2 20.1 57 272-330 107-163 (375)
82 PRK07333 2-octaprenyl-6-methox 99.3 2.3E-10 5E-15 115.3 20.3 56 272-329 111-166 (403)
83 TIGR01813 flavo_cyto_c flavocy 99.3 3.9E-11 8.4E-16 122.0 13.7 59 272-330 130-192 (439)
84 PRK07608 ubiquinone biosynthes 99.3 2.1E-09 4.6E-14 107.7 26.1 55 272-329 111-166 (388)
85 PRK08244 hypothetical protein; 99.3 1.2E-09 2.7E-14 112.7 24.9 62 274-335 102-165 (493)
86 COG0562 Glf UDP-galactopyranos 99.3 5.2E-11 1.1E-15 108.0 12.6 239 57-333 1-244 (374)
87 COG0654 UbiH 2-polyprenyl-6-me 99.3 2.4E-09 5.2E-14 106.8 26.0 63 272-336 104-169 (387)
88 PRK07494 2-octaprenyl-6-methox 99.3 2.4E-10 5.2E-15 114.5 18.8 56 272-329 111-166 (388)
89 PRK08020 ubiF 2-octaprenyl-3-m 99.3 1.5E-09 3.2E-14 108.9 24.3 56 273-330 113-169 (391)
90 PRK08243 4-hydroxybenzoate 3-m 99.3 4.1E-09 8.9E-14 105.5 27.3 60 57-132 2-63 (392)
91 PRK13339 malate:quinone oxidor 99.3 1.7E-11 3.8E-16 123.4 9.9 61 271-331 183-248 (497)
92 PRK08274 tricarballylate dehyd 99.3 6.5E-11 1.4E-15 121.3 14.4 58 271-329 130-191 (466)
93 PRK07190 hypothetical protein; 99.3 2.2E-09 4.7E-14 109.7 25.2 58 276-335 113-171 (487)
94 TIGR02352 thiamin_ThiO glycine 99.3 9.5E-11 2.1E-15 115.1 14.4 199 271-509 136-335 (337)
95 PF01494 FAD_binding_3: FAD bi 99.2 2.1E-10 4.6E-15 113.5 16.9 63 273-335 112-178 (356)
96 PRK09126 hypothetical protein; 99.2 5.9E-10 1.3E-14 111.8 20.3 53 275-329 113-166 (392)
97 PLN02463 lycopene beta cyclase 99.2 7.8E-09 1.7E-13 103.8 27.9 55 272-329 114-168 (447)
98 PRK06834 hypothetical protein; 99.2 1.7E-09 3.8E-14 110.5 23.3 55 274-330 102-156 (488)
99 PLN00093 geranylgeranyl diphos 99.2 7.9E-09 1.7E-13 104.3 27.3 37 54-90 36-72 (450)
100 PRK07588 hypothetical protein; 99.2 1.2E-09 2.5E-14 109.5 21.3 54 274-330 105-158 (391)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.2 6.4E-09 1.4E-13 108.4 27.3 62 55-132 8-69 (538)
102 TIGR02023 BchP-ChlP geranylger 99.2 5.5E-09 1.2E-13 104.4 25.6 32 58-89 1-32 (388)
103 PRK08013 oxidoreductase; Provi 99.2 4.3E-09 9.3E-14 105.6 24.7 61 273-335 112-174 (400)
104 PRK06185 hypothetical protein; 99.2 8.2E-09 1.8E-13 104.1 26.5 62 273-335 109-175 (407)
105 PRK08849 2-octaprenyl-3-methyl 99.2 3.1E-09 6.8E-14 106.0 22.7 55 274-330 112-167 (384)
106 PLN02697 lycopene epsilon cycl 99.2 2.1E-08 4.6E-13 102.2 28.6 57 272-330 192-248 (529)
107 PRK08850 2-octaprenyl-6-methox 99.2 1.2E-08 2.6E-13 102.7 26.4 60 274-335 113-174 (405)
108 PRK06126 hypothetical protein; 99.2 1.1E-09 2.5E-14 114.4 19.5 62 55-132 5-66 (545)
109 PRK08132 FAD-dependent oxidore 99.2 1E-08 2.2E-13 107.2 26.4 63 54-132 20-82 (547)
110 TIGR00275 flavoprotein, HI0933 99.2 3.8E-10 8.3E-15 112.6 15.1 57 271-330 104-160 (400)
111 TIGR01790 carotene-cycl lycope 99.2 1.6E-08 3.6E-13 101.2 26.8 57 272-330 85-141 (388)
112 PF00890 FAD_binding_2: FAD bi 99.2 1.9E-10 4.2E-15 116.3 12.6 60 271-331 140-204 (417)
113 TIGR02028 ChlP geranylgeranyl 99.2 6.1E-09 1.3E-13 104.1 23.1 36 58-93 1-36 (398)
114 PRK12835 3-ketosteroid-delta-1 99.2 1.5E-09 3.2E-14 113.3 18.7 60 271-330 212-275 (584)
115 PRK06175 L-aspartate oxidase; 99.2 4.9E-10 1.1E-14 112.8 14.7 57 272-329 128-188 (433)
116 PRK12845 3-ketosteroid-delta-1 99.2 1.4E-09 3.1E-14 112.7 18.3 58 272-330 217-278 (564)
117 PRK05732 2-octaprenyl-6-methox 99.2 1.2E-08 2.6E-13 102.5 24.7 54 275-330 115-169 (395)
118 PRK07804 L-aspartate oxidase; 99.2 3.6E-10 7.8E-15 117.1 13.6 59 272-330 144-210 (541)
119 PRK07573 sdhA succinate dehydr 99.2 6.2E-10 1.3E-14 117.1 15.5 54 276-330 174-232 (640)
120 PF01946 Thi4: Thi4 family; PD 99.1 8.8E-11 1.9E-15 101.7 7.0 41 56-96 16-56 (230)
121 PF13738 Pyr_redox_3: Pyridine 99.1 1.2E-10 2.5E-15 105.4 8.2 52 276-329 86-137 (203)
122 PRK07395 L-aspartate oxidase; 99.1 7.2E-10 1.6E-14 114.7 14.8 59 271-329 133-196 (553)
123 PRK12839 hypothetical protein; 99.1 2.5E-09 5.4E-14 111.1 18.7 60 271-330 213-276 (572)
124 PLN02661 Putative thiazole syn 99.1 1.6E-09 3.6E-14 102.8 15.8 43 54-96 89-132 (357)
125 PRK06134 putative FAD-binding 99.1 2.3E-09 5E-14 112.1 18.5 59 271-330 216-278 (581)
126 PRK08958 sdhA succinate dehydr 99.1 5.3E-10 1.1E-14 116.7 13.6 60 271-330 142-206 (588)
127 PRK11445 putative oxidoreducta 99.1 3.1E-08 6.8E-13 97.4 25.3 60 57-131 1-62 (351)
128 PTZ00139 Succinate dehydrogena 99.1 9.2E-10 2E-14 115.4 15.0 59 272-330 166-229 (617)
129 PRK09078 sdhA succinate dehydr 99.1 8.5E-10 1.8E-14 115.5 14.5 59 272-330 149-212 (598)
130 PRK06452 sdhA succinate dehydr 99.1 8.7E-10 1.9E-14 114.8 14.4 58 272-330 136-198 (566)
131 PRK08163 salicylate hydroxylas 99.1 3.1E-10 6.7E-15 114.0 10.8 57 272-330 109-166 (396)
132 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.9E-09 4.1E-14 113.0 16.9 58 272-330 129-191 (566)
133 PRK06617 2-octaprenyl-6-methox 99.1 3.3E-08 7.2E-13 98.3 24.7 61 272-335 104-166 (374)
134 TIGR01989 COQ6 Ubiquinone bios 99.1 3.6E-08 7.7E-13 100.1 25.4 63 273-335 118-189 (437)
135 TIGR03197 MnmC_Cterm tRNA U-34 99.1 2.1E-09 4.5E-14 107.2 16.1 59 271-332 134-192 (381)
136 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 4.6E-08 1E-12 97.7 25.6 60 57-132 2-63 (390)
137 PLN00128 Succinate dehydrogena 99.1 1.1E-09 2.4E-14 114.7 14.3 60 271-330 186-250 (635)
138 PRK12844 3-ketosteroid-delta-1 99.1 3.9E-09 8.5E-14 109.7 17.9 58 272-330 208-269 (557)
139 PLN02172 flavin-containing mon 99.1 1.1E-09 2.3E-14 110.6 13.3 44 55-98 8-51 (461)
140 TIGR00551 nadB L-aspartate oxi 99.1 2.8E-09 6E-14 109.4 16.2 59 271-330 127-189 (488)
141 PRK12843 putative FAD-binding 99.1 1.1E-08 2.3E-13 107.1 20.8 59 271-330 220-282 (578)
142 PRK06263 sdhA succinate dehydr 99.1 3.1E-09 6.6E-14 110.5 16.7 59 272-330 134-197 (543)
143 PLN02815 L-aspartate oxidase 99.1 2.1E-09 4.5E-14 111.7 15.2 41 55-96 27-67 (594)
144 PRK12842 putative succinate de 99.1 5.6E-09 1.2E-13 109.3 18.1 44 55-98 7-50 (574)
145 PRK07057 sdhA succinate dehydr 99.1 2.4E-09 5.3E-14 111.9 15.2 59 272-330 148-211 (591)
146 PRK06996 hypothetical protein; 99.1 7.3E-08 1.6E-12 96.7 24.8 62 272-335 115-181 (398)
147 PRK08641 sdhA succinate dehydr 99.0 5.5E-09 1.2E-13 109.2 17.0 41 56-96 2-42 (589)
148 PRK05945 sdhA succinate dehydr 99.0 2.9E-09 6.4E-14 111.3 15.0 59 271-330 134-197 (575)
149 PRK08205 sdhA succinate dehydr 99.0 2.4E-09 5.2E-14 112.0 14.2 60 271-330 139-206 (583)
150 PRK07843 3-ketosteroid-delta-1 99.0 8.5E-09 1.8E-13 107.3 17.9 44 55-98 5-48 (557)
151 PRK07803 sdhA succinate dehydr 99.0 5.1E-09 1.1E-13 110.2 16.4 41 56-96 7-47 (626)
152 TIGR02485 CobZ_N-term precorri 99.0 2.6E-09 5.6E-14 108.2 13.4 59 271-329 122-182 (432)
153 PRK08294 phenol 2-monooxygenas 99.0 1.6E-07 3.4E-12 99.1 27.0 61 55-133 30-93 (634)
154 PRK12837 3-ketosteroid-delta-1 99.0 1.3E-08 2.8E-13 105.1 18.3 42 55-97 5-46 (513)
155 PRK08626 fumarate reductase fl 99.0 1.1E-09 2.4E-14 115.4 10.6 58 272-330 158-220 (657)
156 PRK08401 L-aspartate oxidase; 99.0 8.4E-09 1.8E-13 105.2 16.4 57 271-330 119-175 (466)
157 PRK12834 putative FAD-binding 99.0 9.3E-09 2E-13 107.1 16.3 42 56-97 3-46 (549)
158 PF13454 NAD_binding_9: FAD-NA 99.0 1.1E-08 2.3E-13 87.8 13.6 49 277-328 106-155 (156)
159 PLN02985 squalene monooxygenas 99.0 3.6E-07 7.8E-12 93.9 27.1 38 54-91 40-77 (514)
160 PRK08071 L-aspartate oxidase; 99.0 2.6E-09 5.6E-14 109.9 11.3 57 272-330 130-190 (510)
161 PTZ00306 NADH-dependent fumara 99.0 3.4E-09 7.3E-14 118.9 12.8 44 54-97 406-449 (1167)
162 PRK06069 sdhA succinate dehydr 99.0 1.1E-08 2.3E-13 107.3 15.6 58 272-330 137-200 (577)
163 PRK07236 hypothetical protein; 99.0 1.1E-08 2.4E-13 102.2 15.1 62 56-132 5-66 (386)
164 PF12831 FAD_oxidored: FAD dep 99.0 6.5E-10 1.4E-14 112.0 6.1 60 277-337 95-157 (428)
165 TIGR01176 fum_red_Fp fumarate 99.0 1E-08 2.3E-13 106.8 15.2 59 271-330 131-195 (580)
166 KOG2852 Possible oxidoreductas 99.0 1.2E-08 2.6E-13 91.3 13.2 43 56-98 9-57 (380)
167 PRK09231 fumarate reductase fl 99.0 9.1E-09 2E-13 107.5 14.7 58 272-330 133-196 (582)
168 KOG0042 Glycerol-3-phosphate d 99.0 1.9E-09 4.1E-14 104.5 8.6 44 55-98 65-108 (680)
169 TIGR01292 TRX_reduct thioredox 99.0 6.1E-09 1.3E-13 100.5 12.2 38 58-96 1-38 (300)
170 PRK06854 adenylylsulfate reduc 99.0 1.4E-08 3E-13 106.5 15.7 58 272-330 132-195 (608)
171 TIGR01811 sdhA_Bsu succinate d 99.0 1.2E-08 2.6E-13 106.9 15.1 58 272-329 129-195 (603)
172 PRK05249 soluble pyridine nucl 99.0 7.6E-09 1.7E-13 105.9 13.4 57 272-330 216-272 (461)
173 TIGR03378 glycerol3P_GlpB glyc 98.9 5.2E-09 1.1E-13 102.3 10.6 63 272-335 263-327 (419)
174 PRK07512 L-aspartate oxidase; 98.9 4.9E-09 1.1E-13 107.9 10.9 59 271-330 135-197 (513)
175 PF05834 Lycopene_cycl: Lycope 98.9 1.9E-07 4.2E-12 92.5 21.8 55 272-329 87-141 (374)
176 PF01134 GIDA: Glucose inhibit 98.9 8.7E-09 1.9E-13 99.5 11.4 56 273-330 96-152 (392)
177 PF04820 Trp_halogenase: Trypt 98.9 1.7E-08 3.7E-13 102.0 14.1 58 272-330 154-211 (454)
178 PRK06116 glutathione reductase 98.9 9E-09 2E-13 105.0 12.2 56 273-329 209-264 (450)
179 PRK09077 L-aspartate oxidase; 98.9 1.9E-08 4.1E-13 104.3 14.6 59 272-330 138-207 (536)
180 PRK08275 putative oxidoreducta 98.9 3.5E-08 7.6E-13 102.8 16.6 59 272-330 137-200 (554)
181 PRK06753 hypothetical protein; 98.9 4.8E-09 1E-13 104.5 9.8 35 58-92 1-35 (373)
182 COG2509 Uncharacterized FAD-de 98.9 2.9E-07 6.3E-12 88.3 20.9 58 271-329 172-229 (486)
183 PF06039 Mqo: Malate:quinone o 98.9 4.9E-09 1.1E-13 101.2 9.1 63 271-334 180-248 (488)
184 TIGR01350 lipoamide_DH dihydro 98.9 6.5E-09 1.4E-13 106.5 10.3 57 272-330 211-269 (461)
185 TIGR01421 gluta_reduc_1 glutat 98.9 2.5E-08 5.3E-13 101.4 14.1 58 272-330 207-265 (450)
186 PRK05329 anaerobic glycerol-3- 98.9 1.7E-08 3.8E-13 100.0 12.5 61 273-334 260-322 (422)
187 COG2072 TrkA Predicted flavopr 98.9 2.3E-08 4.9E-13 100.7 13.6 45 54-98 5-50 (443)
188 PRK09897 hypothetical protein; 98.9 3.4E-08 7.3E-13 100.8 13.9 54 273-328 108-164 (534)
189 TIGR01372 soxA sarcosine oxida 98.9 9.5E-08 2.1E-12 105.9 18.3 43 56-98 162-204 (985)
190 KOG2404 Fumarate reductase, fl 98.9 2.4E-08 5.1E-13 90.8 10.9 40 59-98 11-50 (477)
191 PRK05868 hypothetical protein; 98.8 1.1E-08 2.4E-13 101.3 9.9 50 284-335 116-166 (372)
192 PRK06416 dihydrolipoamide dehy 98.8 3.5E-08 7.7E-13 101.0 13.9 42 56-98 3-44 (462)
193 TIGR01424 gluta_reduc_2 glutat 98.8 9.9E-08 2.2E-12 97.0 16.8 41 57-98 2-42 (446)
194 PRK12831 putative oxidoreducta 98.8 2.1E-07 4.6E-12 94.6 19.1 44 54-97 137-180 (464)
195 PRK06475 salicylate hydroxylas 98.8 2.1E-08 4.5E-13 100.8 11.6 62 272-335 107-173 (400)
196 PRK06115 dihydrolipoamide dehy 98.8 4.7E-08 1E-12 99.9 14.3 42 57-98 3-44 (466)
197 TIGR03140 AhpF alkyl hydropero 98.8 1.8E-08 3.9E-13 104.1 11.3 51 277-329 272-322 (515)
198 PRK15317 alkyl hydroperoxide r 98.8 3.5E-08 7.5E-13 102.2 13.1 52 276-329 270-321 (517)
199 TIGR00136 gidA glucose-inhibit 98.8 3.3E-08 7.1E-13 100.7 12.4 62 272-334 96-158 (617)
200 COG4716 Myosin-crossreactive a 98.8 1.6E-08 3.4E-13 93.8 9.1 253 55-327 20-289 (587)
201 PRK07251 pyridine nucleotide-d 98.8 1.1E-07 2.4E-12 96.7 16.4 42 57-98 3-45 (438)
202 KOG2614 Kynurenine 3-monooxyge 98.8 5.4E-08 1.2E-12 92.3 12.0 38 57-94 2-39 (420)
203 TIGR01316 gltA glutamate synth 98.8 2.7E-07 5.9E-12 93.7 18.1 44 54-97 130-173 (449)
204 TIGR03219 salicylate_mono sali 98.8 1.5E-08 3.2E-13 102.3 8.6 54 273-330 106-159 (414)
205 PF00732 GMC_oxred_N: GMC oxid 98.8 8.6E-08 1.9E-12 92.2 13.4 36 58-93 1-37 (296)
206 PRK07818 dihydrolipoamide dehy 98.8 1.7E-07 3.7E-12 96.0 16.3 41 57-98 4-44 (466)
207 KOG1399 Flavin-containing mono 98.8 7.8E-08 1.7E-12 95.4 12.8 43 56-98 5-47 (448)
208 PRK06327 dihydrolipoamide dehy 98.8 2E-07 4.3E-12 95.6 15.7 41 56-96 3-49 (475)
209 PRK07538 hypothetical protein; 98.8 4.1E-08 9E-13 99.0 10.5 35 58-92 1-35 (413)
210 PRK12769 putative oxidoreducta 98.7 2.4E-07 5.2E-12 98.6 16.7 44 55-98 325-368 (654)
211 PRK12775 putative trifunctiona 98.7 3.6E-07 7.8E-12 100.9 18.4 42 56-97 429-470 (1006)
212 COG1252 Ndh NADH dehydrogenase 98.7 4.3E-07 9.2E-12 88.4 16.6 53 271-329 208-261 (405)
213 PRK08010 pyridine nucleotide-d 98.7 2.4E-08 5.1E-13 101.6 8.3 56 272-330 199-254 (441)
214 PRK06467 dihydrolipoamide dehy 98.7 3.3E-07 7.2E-12 93.7 16.6 43 56-98 3-45 (471)
215 PRK05976 dihydrolipoamide dehy 98.7 3.6E-07 7.8E-12 93.7 17.0 42 56-98 3-44 (472)
216 COG0492 TrxB Thioredoxin reduc 98.7 1E-07 2.2E-12 90.3 11.6 53 274-330 63-115 (305)
217 TIGR02061 aprA adenosine phosp 98.7 4.3E-07 9.4E-12 94.6 16.9 58 273-330 127-191 (614)
218 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2E-07 4.3E-12 93.0 13.7 56 272-329 214-271 (454)
219 KOG2415 Electron transfer flav 98.7 1.2E-07 2.6E-12 89.2 11.0 58 271-328 182-254 (621)
220 TIGR03143 AhpF_homolog putativ 98.7 1.3E-07 2.9E-12 98.5 12.0 41 56-97 3-43 (555)
221 PRK11749 dihydropyrimidine deh 98.7 1.1E-06 2.3E-11 89.8 18.4 43 55-97 138-180 (457)
222 KOG2665 Predicted FAD-dependen 98.7 2.4E-07 5.2E-12 84.1 11.6 60 271-330 195-257 (453)
223 PTZ00058 glutathione reductase 98.7 2.6E-07 5.6E-12 95.5 13.5 44 54-98 45-88 (561)
224 COG0445 GidA Flavin-dependent 98.6 1E-06 2.3E-11 86.5 16.1 56 278-334 106-162 (621)
225 PRK10262 thioredoxin reductase 98.6 2.2E-07 4.8E-12 90.3 11.6 43 55-98 4-46 (321)
226 PRK12810 gltD glutamate syntha 98.6 1.1E-06 2.4E-11 90.0 16.5 43 55-97 141-183 (471)
227 PRK12778 putative bifunctional 98.6 5.5E-07 1.2E-11 97.5 15.1 43 55-97 429-471 (752)
228 COG3075 GlpB Anaerobic glycero 98.6 9.9E-07 2.1E-11 80.8 14.1 64 273-337 259-324 (421)
229 PLN02927 antheraxanthin epoxid 98.6 1.9E-07 4.1E-12 97.2 10.7 36 55-90 79-114 (668)
230 PRK13800 putative oxidoreducta 98.6 6.1E-07 1.3E-11 98.7 15.1 36 56-91 12-47 (897)
231 PTZ00052 thioredoxin reductase 98.6 7.8E-07 1.7E-11 91.5 14.8 58 273-332 223-280 (499)
232 TIGR02462 pyranose_ox pyranose 98.6 2E-06 4.4E-11 87.7 17.5 37 58-94 1-37 (544)
233 PRK12809 putative oxidoreducta 98.6 1.5E-06 3.3E-11 92.2 17.2 43 55-97 308-350 (639)
234 TIGR03377 glycerol3P_GlpA glyc 98.6 8.6E-06 1.9E-10 84.5 22.3 60 271-331 127-191 (516)
235 PRK06370 mercuric reductase; V 98.6 1.2E-06 2.6E-11 89.7 15.8 42 56-98 4-45 (463)
236 TIGR01318 gltD_gamma_fam gluta 98.6 2E-06 4.3E-11 87.8 17.0 43 55-97 139-181 (467)
237 TIGR01810 betA choline dehydro 98.6 3.9E-07 8.4E-12 94.9 11.9 53 276-329 197-254 (532)
238 PLN02546 glutathione reductase 98.6 2.7E-06 5.8E-11 88.1 17.3 33 56-88 78-110 (558)
239 PLN02507 glutathione reductase 98.6 2E-06 4.4E-11 88.4 16.4 43 55-97 23-74 (499)
240 COG3573 Predicted oxidoreducta 98.5 1.4E-06 3E-11 79.9 12.9 41 56-96 4-46 (552)
241 PF00070 Pyr_redox: Pyridine n 98.5 1.3E-06 2.8E-11 65.4 10.3 33 59-91 1-33 (80)
242 KOG1335 Dihydrolipoamide dehyd 98.5 1.5E-06 3.3E-11 81.3 12.4 43 56-98 38-80 (506)
243 PRK02106 choline dehydrogenase 98.5 1.6E-06 3.4E-11 90.9 14.1 36 56-91 4-40 (560)
244 PRK12771 putative glutamate sy 98.5 1E-05 2.2E-10 84.9 20.0 43 55-97 135-177 (564)
245 PRK07845 flavoprotein disulfid 98.5 4.8E-06 1E-10 85.2 17.1 40 58-98 2-41 (466)
246 COG1053 SdhA Succinate dehydro 98.5 1.6E-06 3.5E-11 89.1 13.1 44 55-98 4-47 (562)
247 KOG1439 RAB proteins geranylge 98.4 2.4E-06 5.3E-11 80.5 12.0 253 56-325 3-284 (440)
248 COG0029 NadB Aspartate oxidase 98.4 3.4E-06 7.3E-11 82.2 12.7 58 271-328 132-194 (518)
249 PRK14989 nitrite reductase sub 98.4 2.2E-06 4.8E-11 92.9 11.3 57 274-330 189-245 (847)
250 PRK09754 phenylpropionate diox 98.3 7.7E-06 1.7E-10 82.0 13.1 50 278-330 192-241 (396)
251 KOG0405 Pyridine nucleotide-di 98.3 2.3E-06 4.9E-11 79.0 7.7 47 52-98 15-61 (478)
252 COG4529 Uncharacterized protei 98.3 4.1E-06 9E-11 81.7 9.9 40 57-96 1-43 (474)
253 TIGR03315 Se_ygfK putative sel 98.3 1.4E-06 3.1E-11 94.6 6.8 43 56-98 536-578 (1012)
254 COG5044 MRS6 RAB proteins gera 98.3 3E-05 6.4E-10 72.5 14.3 249 56-325 5-279 (434)
255 PTZ00318 NADH dehydrogenase-li 98.2 1.8E-05 4E-10 79.9 14.3 51 272-328 228-278 (424)
256 COG1148 HdrA Heterodisulfide r 98.2 1.1E-06 2.3E-11 84.8 4.7 45 55-99 122-166 (622)
257 PRK12779 putative bifunctional 98.2 1.4E-06 3E-11 95.4 6.2 43 55-97 304-346 (944)
258 PLN02852 ferredoxin-NADP+ redu 98.2 1.8E-06 4E-11 87.2 6.5 45 54-98 23-69 (491)
259 PRK13512 coenzyme A disulfide 98.2 1.6E-05 3.5E-10 80.7 13.1 51 273-329 190-240 (438)
260 TIGR01438 TGR thioredoxin and 98.2 3E-05 6.6E-10 79.5 15.1 33 57-89 2-34 (484)
261 PRK06912 acoL dihydrolipoamide 98.2 4.7E-05 1E-09 77.8 15.6 39 59-98 2-40 (458)
262 TIGR03452 mycothione_red mycot 98.2 4.7E-05 1E-09 77.6 15.2 39 57-98 2-40 (452)
263 KOG3923 D-aspartate oxidase [A 98.2 7E-05 1.5E-09 68.1 14.1 186 271-512 150-338 (342)
264 PRK09564 coenzyme A disulfide 98.1 7.1E-06 1.5E-10 83.8 8.6 35 58-92 1-37 (444)
265 PRK09853 putative selenate red 98.1 3.5E-06 7.6E-11 91.2 6.3 44 55-98 537-580 (1019)
266 TIGR02374 nitri_red_nirB nitri 98.1 2.4E-05 5.2E-10 85.0 12.7 50 278-329 188-237 (785)
267 PRK09754 phenylpropionate diox 98.1 2.1E-05 4.6E-10 78.8 11.3 44 283-330 69-112 (396)
268 PF00743 FMO-like: Flavin-bind 98.1 2.9E-06 6.3E-11 87.2 5.0 40 58-97 2-41 (531)
269 KOG1336 Monodehydroascorbate/f 98.1 3.1E-05 6.7E-10 75.3 11.3 59 277-335 260-318 (478)
270 PRK04965 NADH:flavorubredoxin 98.1 3E-05 6.4E-10 77.3 11.8 50 278-329 189-238 (377)
271 PRK06370 mercuric reductase; V 98.1 5.6E-05 1.2E-09 77.5 13.8 35 57-91 171-205 (463)
272 PRK06292 dihydrolipoamide dehy 98.1 4.3E-06 9.3E-11 85.7 5.2 41 56-97 2-42 (460)
273 TIGR03169 Nterm_to_SelD pyridi 98.0 0.0001 2.2E-09 73.1 14.2 51 273-329 192-242 (364)
274 PTZ00188 adrenodoxin reductase 98.0 8.8E-06 1.9E-10 81.1 6.4 43 56-98 38-81 (506)
275 PRK06567 putative bifunctional 98.0 8.2E-06 1.8E-10 87.3 6.1 42 54-95 380-421 (1028)
276 TIGR02053 MerA mercuric reduct 98.0 6.3E-06 1.4E-10 84.5 5.2 39 58-97 1-39 (463)
277 PRK14694 putative mercuric red 98.0 7E-06 1.5E-10 84.1 5.5 59 272-333 218-276 (468)
278 TIGR02053 MerA mercuric reduct 98.0 9.9E-05 2.1E-09 75.7 13.6 33 58-90 167-199 (463)
279 PRK07846 mycothione reductase; 98.0 0.00016 3.5E-09 73.6 14.8 39 57-98 1-39 (451)
280 PRK14727 putative mercuric red 98.0 8.1E-06 1.8E-10 83.8 5.4 44 55-98 14-57 (479)
281 PRK12814 putative NADPH-depend 98.0 1.2E-05 2.6E-10 85.4 6.8 43 55-97 191-233 (652)
282 PRK05335 tRNA (uracil-5-)-meth 98.0 9.6E-06 2.1E-10 79.5 5.4 37 57-93 2-38 (436)
283 PF07156 Prenylcys_lyase: Pren 98.0 0.00012 2.7E-09 71.2 12.8 115 205-330 68-187 (368)
284 TIGR01789 lycopene_cycl lycope 97.9 8.5E-06 1.9E-10 80.5 4.8 37 59-95 1-39 (370)
285 PRK13748 putative mercuric red 97.9 8.6E-06 1.9E-10 85.7 5.1 56 272-330 310-365 (561)
286 PRK07845 flavoprotein disulfid 97.9 0.00011 2.4E-09 75.2 12.9 51 278-330 224-274 (466)
287 PRK05976 dihydrolipoamide dehy 97.9 0.00011 2.3E-09 75.6 12.7 34 58-91 181-214 (472)
288 TIGR02374 nitri_red_nirB nitri 97.9 3.4E-05 7.4E-10 83.8 9.4 45 282-330 64-108 (785)
289 PRK09564 coenzyme A disulfide 97.9 0.00011 2.4E-09 75.1 12.6 49 278-329 197-245 (444)
290 PTZ00367 squalene epoxidase; P 97.9 1.1E-05 2.5E-10 83.4 5.3 63 55-132 31-93 (567)
291 TIGR03385 CoA_CoA_reduc CoA-di 97.9 0.00011 2.4E-09 74.6 12.3 48 278-329 185-232 (427)
292 KOG4405 GDP dissociation inhib 97.8 0.00083 1.8E-08 63.8 15.7 121 201-326 217-341 (547)
293 TIGR01423 trypano_reduc trypan 97.8 1.9E-05 4.2E-10 80.8 5.3 58 272-330 231-288 (486)
294 TIGR01317 GOGAT_sm_gam glutama 97.8 2.8E-05 6.1E-10 79.7 6.4 42 56-97 142-183 (485)
295 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.2E-05 4.7E-10 77.6 5.0 37 58-94 1-37 (433)
296 TIGR01423 trypano_reduc trypan 97.8 0.00023 5E-09 72.9 12.7 36 57-92 187-225 (486)
297 PRK07846 mycothione reductase; 97.8 0.00028 6E-09 71.9 13.2 48 284-333 218-265 (451)
298 KOG1298 Squalene monooxygenase 97.8 2.2E-05 4.8E-10 73.7 4.5 36 54-89 42-77 (509)
299 COG0493 GltD NADPH-dependent g 97.8 3.3E-05 7.3E-10 77.3 6.0 43 56-98 122-164 (457)
300 PLN02507 glutathione reductase 97.8 0.00022 4.9E-09 73.4 12.2 51 278-330 250-300 (499)
301 TIGR01424 gluta_reduc_2 glutat 97.8 0.00023 4.9E-09 72.6 12.2 49 279-329 214-262 (446)
302 PF07992 Pyr_redox_2: Pyridine 97.8 2.7E-05 5.8E-10 70.1 4.8 33 59-91 1-33 (201)
303 PRK06912 acoL dihydrolipoamide 97.8 0.00034 7.4E-09 71.5 13.4 33 58-90 171-203 (458)
304 TIGR03862 flavo_PP4765 unchara 97.8 0.00018 3.9E-09 70.2 10.6 58 271-332 85-143 (376)
305 COG0446 HcaD Uncharacterized N 97.8 0.00021 4.5E-09 72.3 11.5 39 57-95 136-174 (415)
306 PRK12770 putative glutamate sy 97.7 5.4E-05 1.2E-09 74.6 6.5 43 56-98 17-59 (352)
307 PTZ00153 lipoamide dehydrogena 97.7 3.4E-05 7.3E-10 81.2 5.3 43 56-98 115-158 (659)
308 PTZ00058 glutathione reductase 97.7 0.00038 8.3E-09 72.3 12.7 34 57-90 237-270 (561)
309 KOG0399 Glutamate synthase [Am 97.7 3.9E-05 8.4E-10 81.0 5.2 43 55-97 1783-1825(2142)
310 PRK05675 sdhA succinate dehydr 97.7 0.0003 6.4E-09 73.7 11.3 60 271-330 125-189 (570)
311 PRK14727 putative mercuric red 97.7 0.00058 1.3E-08 70.2 13.1 51 278-331 234-284 (479)
312 PRK13984 putative oxidoreducta 97.6 8.5E-05 1.8E-09 78.8 6.6 43 55-97 281-323 (604)
313 PRK06327 dihydrolipoamide dehy 97.6 0.00059 1.3E-08 70.1 12.5 33 58-90 184-216 (475)
314 PRK14694 putative mercuric red 97.6 0.00085 1.8E-08 68.9 13.5 32 58-89 179-210 (468)
315 KOG1800 Ferredoxin/adrenodoxin 97.5 0.00014 3E-09 68.5 5.4 43 56-98 19-63 (468)
316 COG3634 AhpF Alkyl hydroperoxi 97.5 0.00017 3.7E-09 66.9 6.0 64 274-337 268-332 (520)
317 PLN02546 glutathione reductase 97.5 0.001 2.2E-08 69.2 12.3 52 278-330 299-350 (558)
318 PTZ00153 lipoamide dehydrogena 97.5 0.0014 2.9E-08 69.3 13.3 34 58-91 313-346 (659)
319 PRK08255 salicylyl-CoA 5-hydro 97.5 9.9E-05 2.1E-09 80.1 5.1 34 58-91 1-36 (765)
320 KOG0404 Thioredoxin reductase 97.5 0.00083 1.8E-08 58.5 9.1 61 273-337 71-131 (322)
321 TIGR03452 mycothione_red mycot 97.5 0.0013 2.7E-08 67.2 12.0 46 285-332 222-267 (452)
322 PRK06467 dihydrolipoamide dehy 97.5 0.0012 2.6E-08 67.8 11.9 34 58-91 175-208 (471)
323 PF13434 K_oxygenase: L-lysine 97.4 0.00062 1.3E-08 66.2 9.1 35 57-91 2-37 (341)
324 PRK13748 putative mercuric red 97.4 0.0013 2.9E-08 69.2 11.9 33 57-89 270-302 (561)
325 KOG2960 Protein involved in th 97.4 4.7E-05 1E-09 65.4 0.1 41 56-96 75-117 (328)
326 KOG2311 NAD/FAD-utilizing prot 97.3 0.0017 3.7E-08 63.1 10.2 37 55-91 26-62 (679)
327 TIGR01438 TGR thioredoxin and 97.3 0.0019 4.1E-08 66.3 11.5 51 278-330 226-279 (484)
328 COG2303 BetA Choline dehydroge 97.3 0.00022 4.8E-09 74.0 4.5 36 55-90 5-40 (542)
329 PRK06292 dihydrolipoamide dehy 97.2 0.0026 5.7E-08 65.3 11.4 34 57-90 169-202 (460)
330 PLN02785 Protein HOTHEAD 97.0 0.00074 1.6E-08 70.6 5.3 37 53-90 51-87 (587)
331 PF13434 K_oxygenase: L-lysine 97.0 0.0066 1.4E-07 59.1 10.8 36 54-89 187-224 (341)
332 COG1251 NirB NAD(P)H-nitrite r 96.8 0.0041 9E-08 64.1 8.2 50 278-329 193-242 (793)
333 COG1249 Lpd Pyruvate/2-oxoglut 96.6 0.0036 7.9E-08 62.9 6.2 39 56-94 172-210 (454)
334 COG1206 Gid NAD(FAD)-utilizing 96.6 0.0019 4.1E-08 59.9 3.8 36 57-92 3-38 (439)
335 KOG4716 Thioredoxin reductase 96.6 0.002 4.4E-08 59.8 3.8 59 271-330 237-300 (503)
336 PRK04965 NADH:flavorubredoxin 96.4 0.0041 8.8E-08 62.0 5.0 43 282-329 68-110 (377)
337 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.0057 1.2E-07 52.4 3.8 32 59-90 1-32 (157)
338 PF02737 3HCDH_N: 3-hydroxyacy 96.1 0.0076 1.7E-07 52.8 4.3 32 59-90 1-32 (180)
339 KOG1238 Glucose dehydrogenase/ 95.9 0.0078 1.7E-07 61.5 4.2 39 54-92 54-93 (623)
340 PRK01438 murD UDP-N-acetylmura 95.8 0.011 2.5E-07 60.9 5.2 34 57-90 16-49 (480)
341 PRK14989 nitrite reductase sub 95.7 0.015 3.2E-07 63.8 5.7 36 57-92 145-180 (847)
342 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.0099 2.1E-07 52.3 3.6 34 58-91 1-34 (185)
343 PRK05249 soluble pyridine nucl 95.7 0.021 4.6E-07 58.6 6.4 37 57-93 175-211 (461)
344 KOG3855 Monooxygenase involved 95.6 0.014 3.1E-07 56.0 4.2 36 55-90 34-73 (481)
345 PRK02705 murD UDP-N-acetylmura 95.6 0.014 3.1E-07 59.8 4.6 33 59-91 2-34 (459)
346 TIGR01316 gltA glutamate synth 95.5 0.034 7.3E-07 56.7 7.2 35 56-90 271-305 (449)
347 PRK12831 putative oxidoreducta 95.5 0.033 7.1E-07 57.0 7.1 35 56-90 280-314 (464)
348 PF02558 ApbA: Ketopantoate re 95.5 0.016 3.5E-07 49.2 4.1 31 60-90 1-31 (151)
349 PRK07251 pyridine nucleotide-d 95.5 0.022 4.8E-07 58.0 5.5 36 57-92 157-192 (438)
350 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.024 5.1E-07 54.7 4.8 33 58-90 3-35 (308)
351 KOG2755 Oxidoreductase [Genera 95.2 0.012 2.6E-07 52.9 2.3 33 59-91 1-35 (334)
352 TIGR01350 lipoamide_DH dihydro 95.1 0.029 6.3E-07 57.6 5.3 36 58-93 171-206 (461)
353 KOG1346 Programmed cell death 95.1 0.059 1.3E-06 51.9 6.6 60 273-334 394-453 (659)
354 COG0569 TrkA K+ transport syst 95.1 0.03 6.6E-07 51.0 4.7 66 58-132 1-66 (225)
355 COG1004 Ugd Predicted UDP-gluc 95.1 0.027 5.9E-07 54.2 4.3 33 58-90 1-33 (414)
356 TIGR01421 gluta_reduc_1 glutat 95.0 0.035 7.6E-07 56.6 5.4 36 58-93 167-202 (450)
357 PF13738 Pyr_redox_3: Pyridine 94.9 0.032 6.9E-07 50.1 4.3 35 56-90 166-200 (203)
358 COG3486 IucD Lysine/ornithine 94.9 0.56 1.2E-05 45.6 12.5 36 56-91 4-40 (436)
359 KOG2495 NADH-dehydrogenase (ub 94.9 0.52 1.1E-05 46.0 12.3 40 52-91 50-89 (491)
360 PRK07066 3-hydroxybutyryl-CoA 94.9 0.043 9.4E-07 52.6 5.3 34 57-90 7-40 (321)
361 PRK06115 dihydrolipoamide dehy 94.9 0.041 8.9E-07 56.5 5.5 35 57-91 174-208 (466)
362 PRK13512 coenzyme A disulfide 94.8 0.038 8.2E-07 56.2 5.0 36 58-93 149-184 (438)
363 PRK06416 dihydrolipoamide dehy 94.8 0.04 8.6E-07 56.6 5.2 34 58-91 173-206 (462)
364 PF01262 AlaDh_PNT_C: Alanine 94.7 0.053 1.1E-06 47.0 4.9 34 56-89 19-52 (168)
365 PRK07818 dihydrolipoamide dehy 94.7 0.046 9.9E-07 56.2 5.2 34 58-91 173-206 (466)
366 PRK08293 3-hydroxybutyryl-CoA 94.6 0.044 9.6E-07 52.2 4.6 32 58-89 4-35 (287)
367 PRK09260 3-hydroxybutyryl-CoA 94.6 0.045 9.8E-07 52.2 4.7 33 58-90 2-34 (288)
368 PRK07819 3-hydroxybutyryl-CoA 94.5 0.05 1.1E-06 51.7 4.7 34 58-91 6-39 (286)
369 PRK12778 putative bifunctional 94.5 0.09 2E-06 57.4 7.3 34 56-89 569-603 (752)
370 PRK05708 2-dehydropantoate 2-r 94.4 0.06 1.3E-06 51.7 5.1 33 57-89 2-34 (305)
371 PF01488 Shikimate_DH: Shikima 94.4 0.09 2E-06 43.6 5.5 34 56-89 11-45 (135)
372 PRK06249 2-dehydropantoate 2-r 94.4 0.066 1.4E-06 51.7 5.4 34 56-89 4-37 (313)
373 PRK14106 murD UDP-N-acetylmura 94.4 0.055 1.2E-06 55.4 5.1 34 57-90 5-38 (450)
374 cd01080 NAD_bind_m-THF_DH_Cycl 94.4 0.073 1.6E-06 45.8 4.9 34 56-89 43-77 (168)
375 TIGR01470 cysG_Nterm siroheme 94.3 0.069 1.5E-06 47.8 4.9 33 57-89 9-41 (205)
376 PRK07530 3-hydroxybutyryl-CoA 94.2 0.062 1.3E-06 51.4 4.6 32 58-89 5-36 (292)
377 COG0686 Ald Alanine dehydrogen 94.2 0.064 1.4E-06 49.7 4.3 45 54-98 165-217 (371)
378 TIGR03140 AhpF alkyl hydropero 94.1 0.067 1.5E-06 55.6 5.1 34 57-90 352-385 (515)
379 TIGR01816 sdhA_forward succina 94.0 0.15 3.2E-06 53.7 7.4 59 271-330 118-181 (565)
380 PF13241 NAD_binding_7: Putati 94.0 0.056 1.2E-06 42.4 3.2 34 56-89 6-39 (103)
381 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.075 1.6E-06 50.8 4.5 33 58-90 4-36 (291)
382 PRK06522 2-dehydropantoate 2-r 93.8 0.084 1.8E-06 50.8 4.8 31 59-89 2-32 (304)
383 KOG3851 Sulfide:quinone oxidor 93.8 0.065 1.4E-06 49.8 3.6 38 54-91 36-75 (446)
384 PRK12921 2-dehydropantoate 2-r 93.7 0.091 2E-06 50.6 4.8 31 58-88 1-31 (305)
385 TIGR02354 thiF_fam2 thiamine b 93.7 0.099 2.1E-06 46.6 4.6 35 56-90 20-55 (200)
386 PRK05808 3-hydroxybutyryl-CoA 93.7 0.089 1.9E-06 50.0 4.6 33 58-90 4-36 (282)
387 cd05292 LDH_2 A subgroup of L- 93.7 0.095 2E-06 50.4 4.8 33 58-90 1-35 (308)
388 PRK08229 2-dehydropantoate 2-r 93.6 0.093 2E-06 51.4 4.8 32 58-89 3-34 (341)
389 PRK06718 precorrin-2 dehydroge 93.6 0.12 2.6E-06 46.2 5.0 34 56-89 9-42 (202)
390 PRK10262 thioredoxin reductase 93.6 0.1 2.3E-06 50.6 5.1 34 57-90 146-179 (321)
391 TIGR01763 MalateDH_bact malate 93.6 0.1 2.2E-06 50.0 4.9 32 58-89 2-34 (305)
392 PRK06719 precorrin-2 dehydroge 93.5 0.13 2.8E-06 43.8 4.9 32 56-87 12-43 (157)
393 PRK04148 hypothetical protein; 93.5 0.083 1.8E-06 43.1 3.5 34 57-91 17-50 (134)
394 PRK06116 glutathione reductase 93.5 0.11 2.4E-06 53.1 5.2 36 57-92 167-202 (450)
395 PRK15317 alkyl hydroperoxide r 93.4 0.11 2.3E-06 54.2 5.1 35 56-90 350-384 (517)
396 PRK12770 putative glutamate sy 93.4 0.12 2.6E-06 51.0 5.2 33 57-89 172-205 (352)
397 TIGR03143 AhpF_homolog putativ 93.4 0.11 2.3E-06 54.7 5.0 36 56-91 142-177 (555)
398 PRK08010 pyridine nucleotide-d 93.3 0.12 2.6E-06 52.7 5.0 35 58-92 159-193 (441)
399 PRK12779 putative bifunctional 93.2 0.2 4.3E-06 55.7 6.9 35 56-90 446-480 (944)
400 PRK14619 NAD(P)H-dependent gly 93.1 0.15 3.2E-06 49.2 5.1 35 56-90 3-37 (308)
401 TIGR00518 alaDH alanine dehydr 93.0 0.14 3.1E-06 50.5 5.0 34 56-89 166-199 (370)
402 PF00899 ThiF: ThiF family; I 93.0 0.13 2.8E-06 42.7 4.0 35 57-91 2-37 (135)
403 TIGR03026 NDP-sugDHase nucleot 92.9 0.12 2.6E-06 52.1 4.4 33 59-91 2-34 (411)
404 PLN02545 3-hydroxybutyryl-CoA 92.9 0.15 3.2E-06 48.8 4.9 33 58-90 5-37 (295)
405 PRK11064 wecC UDP-N-acetyl-D-m 92.9 0.13 2.8E-06 51.7 4.6 34 58-91 4-37 (415)
406 TIGR01292 TRX_reduct thioredox 92.9 0.15 3.3E-06 48.7 5.0 34 56-89 140-173 (300)
407 PTZ00052 thioredoxin reductase 92.8 0.17 3.6E-06 52.5 5.4 32 58-89 183-214 (499)
408 PRK14618 NAD(P)H-dependent gly 92.8 0.17 3.6E-06 49.3 5.1 34 57-90 4-37 (328)
409 PRK06130 3-hydroxybutyryl-CoA 92.7 0.17 3.7E-06 48.9 5.0 33 58-90 5-37 (311)
410 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.13 2.8E-06 45.3 3.6 38 54-91 8-45 (298)
411 PF00056 Ldh_1_N: lactate/mala 92.6 0.23 5E-06 41.5 5.0 33 58-90 1-36 (141)
412 COG1748 LYS9 Saccharopine dehy 92.5 0.17 3.7E-06 49.5 4.6 32 58-89 2-34 (389)
413 PRK04690 murD UDP-N-acetylmura 92.4 0.16 3.6E-06 52.0 4.7 35 57-91 8-42 (468)
414 PRK14620 NAD(P)H-dependent gly 92.4 0.19 4E-06 49.0 4.8 31 59-89 2-32 (326)
415 cd05293 LDH_1 A subgroup of L- 92.4 0.22 4.8E-06 47.8 5.2 35 56-90 2-38 (312)
416 cd05311 NAD_bind_2_malic_enz N 92.3 0.23 5E-06 45.2 5.0 34 56-89 24-60 (226)
417 PRK01710 murD UDP-N-acetylmura 92.2 0.18 3.9E-06 51.6 4.7 34 57-90 14-47 (458)
418 PRK15116 sulfur acceptor prote 92.2 0.22 4.8E-06 46.3 4.8 36 56-91 29-65 (268)
419 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.2 0.21 4.6E-06 51.4 5.1 34 57-90 5-38 (503)
420 PRK00094 gpsA NAD(P)H-dependen 92.2 0.21 4.5E-06 48.6 4.9 32 58-89 2-33 (325)
421 COG3634 AhpF Alkyl hydroperoxi 92.1 0.13 2.9E-06 48.4 3.2 34 56-89 353-386 (520)
422 COG0771 MurD UDP-N-acetylmuram 92.1 0.17 3.6E-06 50.6 4.1 36 57-92 7-42 (448)
423 COG1252 Ndh NADH dehydrogenase 92.1 0.12 2.5E-06 51.1 2.9 60 56-132 154-226 (405)
424 PF03446 NAD_binding_2: NAD bi 92.0 0.23 5.1E-06 42.7 4.5 33 58-90 2-34 (163)
425 PRK11749 dihydropyrimidine deh 92.0 0.23 5E-06 50.9 5.2 34 56-89 272-306 (457)
426 PRK09424 pntA NAD(P) transhydr 92.0 0.22 4.7E-06 51.0 4.8 34 56-89 164-197 (509)
427 PRK15057 UDP-glucose 6-dehydro 91.9 0.21 4.5E-06 49.6 4.5 32 59-91 2-33 (388)
428 cd05191 NAD_bind_amino_acid_DH 91.8 0.36 7.8E-06 36.3 4.8 33 56-88 22-55 (86)
429 PRK12810 gltD glutamate syntha 91.8 0.45 9.7E-06 49.0 7.1 39 472-512 427-465 (471)
430 PRK08268 3-hydroxy-acyl-CoA de 91.8 0.2 4.4E-06 51.6 4.5 35 57-91 7-41 (507)
431 PRK07531 bifunctional 3-hydrox 91.8 0.21 4.5E-06 51.6 4.6 33 58-90 5-37 (495)
432 PLN02256 arogenate dehydrogena 91.8 0.55 1.2E-05 44.9 7.1 34 56-89 35-68 (304)
433 PRK02472 murD UDP-N-acetylmura 91.8 0.22 4.8E-06 50.9 4.8 34 57-90 5-38 (447)
434 PLN02353 probable UDP-glucose 91.8 0.22 4.8E-06 50.6 4.7 33 58-90 2-36 (473)
435 PRK03369 murD UDP-N-acetylmura 91.7 0.24 5.2E-06 51.1 4.9 33 57-89 12-44 (488)
436 PRK04308 murD UDP-N-acetylmura 91.6 0.26 5.7E-06 50.3 5.1 35 57-91 5-39 (445)
437 PTZ00318 NADH dehydrogenase-li 91.6 0.25 5.3E-06 50.1 4.8 36 58-93 174-223 (424)
438 PRK12549 shikimate 5-dehydroge 91.5 0.29 6.3E-06 46.4 4.8 34 56-89 126-160 (284)
439 PRK11730 fadB multifunctional 91.4 0.22 4.7E-06 53.9 4.4 34 58-91 314-347 (715)
440 PRK00421 murC UDP-N-acetylmura 91.4 0.25 5.4E-06 50.7 4.7 35 56-90 6-41 (461)
441 COG1250 FadB 3-hydroxyacyl-CoA 91.4 0.25 5.4E-06 46.8 4.2 33 57-89 3-35 (307)
442 PF02254 TrkA_N: TrkA-N domain 91.4 0.31 6.6E-06 39.1 4.3 32 60-91 1-32 (116)
443 COG1893 ApbA Ketopantoate redu 91.3 0.24 5.3E-06 47.4 4.2 33 58-90 1-33 (307)
444 PRK08644 thiamine biosynthesis 91.3 0.32 7E-06 43.8 4.7 35 56-90 27-62 (212)
445 cd01075 NAD_bind_Leu_Phe_Val_D 91.2 0.36 7.7E-06 43.1 4.9 34 56-89 27-60 (200)
446 TIGR02437 FadB fatty oxidation 91.2 0.24 5.2E-06 53.4 4.4 36 56-91 312-347 (714)
447 PTZ00082 L-lactate dehydrogena 91.2 0.35 7.5E-06 46.7 5.1 35 57-91 6-41 (321)
448 PRK06223 malate dehydrogenase; 91.2 0.32 7E-06 46.8 5.0 33 58-90 3-36 (307)
449 PRK12475 thiamine/molybdopteri 91.2 0.3 6.6E-06 47.4 4.7 35 56-90 23-58 (338)
450 PRK07688 thiamine/molybdopteri 91.2 0.32 6.9E-06 47.3 4.9 35 56-90 23-58 (339)
451 PRK07417 arogenate dehydrogena 91.1 0.28 6.1E-06 46.5 4.4 31 59-89 2-32 (279)
452 cd01487 E1_ThiF_like E1_ThiF_l 90.9 0.38 8.3E-06 41.8 4.7 32 59-90 1-33 (174)
453 TIGR01317 GOGAT_sm_gam glutama 90.9 0.7 1.5E-05 47.6 7.4 36 56-91 282-318 (485)
454 PRK08306 dipicolinate synthase 90.8 0.39 8.3E-06 45.8 5.0 35 56-90 151-185 (296)
455 TIGR01915 npdG NADPH-dependent 90.8 0.37 8E-06 43.8 4.7 32 58-89 1-33 (219)
456 KOG1335 Dihydrolipoamide dehyd 90.7 0.14 3.1E-06 48.9 2.0 41 56-96 210-250 (506)
457 cd05291 HicDH_like L-2-hydroxy 90.7 0.36 7.8E-06 46.4 4.8 32 59-90 2-35 (306)
458 PRK00141 murD UDP-N-acetylmura 90.7 0.33 7.1E-06 49.9 4.8 33 57-89 15-47 (473)
459 cd00401 AdoHcyase S-adenosyl-L 90.5 0.41 8.9E-06 47.6 5.0 35 56-90 201-235 (413)
460 TIGR02355 moeB molybdopterin s 90.5 0.4 8.7E-06 44.1 4.7 36 56-91 23-59 (240)
461 TIGR02356 adenyl_thiF thiazole 90.5 0.43 9.3E-06 42.7 4.7 34 56-89 20-54 (202)
462 TIGR02441 fa_ox_alpha_mit fatt 90.4 0.31 6.7E-06 52.8 4.4 35 57-91 335-369 (737)
463 PRK01368 murD UDP-N-acetylmura 90.2 0.33 7.1E-06 49.5 4.2 32 57-89 6-37 (454)
464 TIGR00561 pntA NAD(P) transhyd 90.2 0.41 9E-06 48.8 4.8 34 56-89 163-196 (511)
465 PTZ00117 malate dehydrogenase; 90.2 0.48 1E-05 45.7 5.1 35 56-90 4-39 (319)
466 PRK12814 putative NADPH-depend 90.1 0.72 1.6E-05 49.5 6.9 35 56-90 322-357 (652)
467 cd01078 NAD_bind_H4MPT_DH NADP 90.1 0.51 1.1E-05 41.9 4.9 34 56-89 27-61 (194)
468 PRK05690 molybdopterin biosynt 90.0 0.49 1.1E-05 43.8 4.8 34 56-89 31-65 (245)
469 PF13478 XdhC_C: XdhC Rossmann 89.9 0.37 7.9E-06 39.9 3.5 32 60-91 1-32 (136)
470 COG2072 TrkA Predicted flavopr 89.9 0.57 1.2E-05 47.6 5.6 35 56-90 174-208 (443)
471 PRK00066 ldh L-lactate dehydro 89.8 0.54 1.2E-05 45.3 5.2 34 56-89 5-40 (315)
472 PRK08328 hypothetical protein; 89.8 0.48 1E-05 43.4 4.6 35 56-90 26-61 (231)
473 cd01483 E1_enzyme_family Super 89.8 0.5 1.1E-05 39.6 4.4 33 59-91 1-34 (143)
474 TIGR02853 spore_dpaA dipicolin 89.8 0.51 1.1E-05 44.7 4.9 35 56-90 150-184 (287)
475 PRK02006 murD UDP-N-acetylmura 89.8 0.41 9E-06 49.6 4.7 34 57-90 7-40 (498)
476 PLN02172 flavin-containing mon 89.7 0.4 8.6E-06 49.0 4.3 34 56-89 203-236 (461)
477 cd00757 ThiF_MoeB_HesA_family 89.6 0.51 1.1E-05 43.1 4.6 35 56-90 20-55 (228)
478 cd01339 LDH-like_MDH L-lactate 89.6 0.4 8.6E-06 46.0 4.0 31 60-90 1-32 (300)
479 TIGR02440 FadJ fatty oxidation 89.5 0.41 8.8E-06 51.6 4.5 34 57-90 304-338 (699)
480 KOG2495 NADH-dehydrogenase (ub 89.5 0.16 3.4E-06 49.4 1.2 33 58-90 219-265 (491)
481 cd05290 LDH_3 A subgroup of L- 89.5 0.48 1E-05 45.4 4.5 31 59-89 1-33 (307)
482 PRK11154 fadJ multifunctional 89.4 0.39 8.6E-06 51.9 4.3 34 57-90 309-343 (708)
483 TIGR00507 aroE shikimate 5-deh 89.4 0.57 1.2E-05 44.1 4.9 34 56-89 116-149 (270)
484 PRK12548 shikimate 5-dehydroge 89.3 0.65 1.4E-05 44.2 5.3 34 56-89 125-159 (289)
485 PRK03803 murD UDP-N-acetylmura 89.3 0.43 9.4E-06 48.7 4.3 34 57-90 6-39 (448)
486 PF10727 Rossmann-like: Rossma 89.3 0.24 5.3E-06 40.3 2.0 37 54-90 7-43 (127)
487 TIGR02964 xanthine_xdhC xanthi 89.1 0.66 1.4E-05 42.8 4.9 37 55-91 98-134 (246)
488 TIGR03169 Nterm_to_SelD pyridi 89.0 0.52 1.1E-05 46.7 4.6 48 278-330 60-107 (364)
489 cd01065 NAD_bind_Shikimate_DH 88.8 0.77 1.7E-05 38.9 4.9 34 56-89 18-52 (155)
490 TIGR01505 tartro_sem_red 2-hyd 88.8 0.48 1E-05 45.2 4.0 32 59-90 1-32 (291)
491 COG0281 SfcA Malic enzyme [Ene 88.6 0.7 1.5E-05 45.1 4.9 34 56-89 198-234 (432)
492 PRK05562 precorrin-2 dehydroge 88.4 0.8 1.7E-05 41.3 4.8 33 56-88 24-56 (223)
493 PRK01390 murD UDP-N-acetylmura 88.4 0.56 1.2E-05 48.1 4.4 33 57-89 9-41 (460)
494 PRK11199 tyrA bifunctional cho 88.3 0.67 1.4E-05 45.9 4.7 34 56-89 97-131 (374)
495 PRK00683 murD UDP-N-acetylmura 88.2 0.61 1.3E-05 47.1 4.5 32 58-89 4-35 (418)
496 PRK09496 trkA potassium transp 88.1 0.64 1.4E-05 47.6 4.7 34 58-91 1-34 (453)
497 cd01337 MDH_glyoxysomal_mitoch 88.1 0.86 1.9E-05 43.6 5.1 32 58-89 1-35 (310)
498 PTZ00142 6-phosphogluconate de 88.1 0.6 1.3E-05 47.5 4.3 34 58-91 2-35 (470)
499 PRK00258 aroE shikimate 5-dehy 88.1 0.81 1.7E-05 43.3 5.0 34 56-89 122-156 (278)
500 PRK06153 hypothetical protein; 88.0 0.41 9E-06 46.6 2.9 34 56-89 175-209 (393)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=7.3e-58 Score=470.98 Aligned_cols=511 Identities=88% Similarity=1.418 Sum_probs=420.7
Q ss_pred CCCCceeeccCCCCCCccccchhhhhhhhcCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCce
Q 009678 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (529)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~ 95 (529)
+.+|.++.|+++|.+.+..+.+|.............+......+|+|||||++||+||++|++.|++|+|+|+++++||+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 44689999999999998899999875544444444444556789999999999999999999999999999999999999
Q ss_pred eEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcC
Q 009678 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (529)
Q Consensus 96 ~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (529)
+.++...+|+.+|.|.|++.+.++++.++++++|++....+......+.+....+.+..+.++...|.+...+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99976557899999999999999999999999999887777666666666555555555555555666667777777766
Q ss_pred CCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh
Q 009678 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 255 (529)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
..+++.++++....+.+......++....+++|+.+|+++.+.++.+.++++.+++...++.++++++....+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 67788888776655443333333445566789999999999999999999999998888889999999998888777776
Q ss_pred hhccCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhC
Q 009678 256 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (529)
Q Consensus 256 ~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~ 335 (529)
...+++...+++|+.++.+++.|.+.+++.|++|++|++|++|+.++++++++|.+.+|++++||+||+|+|+..+..|+
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLL 371 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhC
Confidence 76777788888887568899999999999999999999999999866777667888889889999999999999999988
Q ss_pred CCchhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCccccc-CCcceeeeccccccccccCCCCceEEEEecCccccCC
Q 009678 336 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS-SSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWIS 414 (529)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (529)
++...+..+.+.+.++.+.++.+++++|++++|....+.++. .+....+.+++.....+++++..++.+++.+..+|.+
T Consensus 372 ~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~ 451 (567)
T PLN02612 372 PDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWIS 451 (567)
T ss_pred cchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhc
Confidence 875544566677777888899999999999998766655555 4445566666665566677777777777777889999
Q ss_pred CChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchH
Q 009678 415 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASME 494 (529)
Q Consensus 415 ~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ 494 (529)
++++++++.++++|.++||+.+.++.....++.+.+..+|.+.|...|+...++|.+++|++||||||||+.++|+++|+
T Consensus 452 ~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sme 531 (567)
T PLN02612 452 RSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASME 531 (567)
T ss_pred CCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHH
Confidence 99999999999999999998644443456778889999999998888887778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhccccccccc
Q 009678 495 GAVLSGKLCAQAIVQDYVLLAARGKGRLAEAS 526 (529)
Q Consensus 495 gA~~Sg~~aA~~i~~~l~~~~~~~~~~~~~~~ 526 (529)
||+.||++||++|+++++.++.+....++|++
T Consensus 532 GAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~ 563 (567)
T PLN02612 532 GAVLSGKLCAQSIVQDYELLAARGPRKLSEAT 563 (567)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999887877777776665
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=4.1e-47 Score=386.55 Aligned_cols=446 Identities=74% Similarity=1.228 Sum_probs=338.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCcccccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (529)
+|+|||||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.|++.+.++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999987545789999999999999999999999999987665555
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHcCC
Q 009678 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (529)
....+......+....+.++. ++.+...+..++.....+++.++++....+........+.....+++|+.+|+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 444444333333333333332 4455555555554444567777776655443322222233345678999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEE
Q 009678 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 298 (529)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I 298 (529)
+..+.+.++.++....++.++++++....+..+..++....+....+..|+.+..+++.|.+.+++.|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 99988899999998888899999999888877777665555665666666556789999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCc-----EEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCc
Q 009678 299 ELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (529)
Q Consensus 299 ~~~~~~~~~~v~~~~G~-----~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 373 (529)
+..+++++++|++.+|+ ++.||.||+|+|++.+..|++.......+.+.+.++.+.++.+++++|+++++... .
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~ 318 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD-H 318 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC-c
Confidence 87667777778887665 79999999999999999998764322445577777778899999999999986532 2
Q ss_pred cccc-CCcceeeeccccccccccCCCCceEEEEecCccccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEec
Q 009678 374 LLFS-SSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVK 452 (529)
Q Consensus 374 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~ 452 (529)
+.+. .+......+.+.......+++..++.+++.....|.+.+++++++.++++|.++||...... ....++.++|.+
T Consensus 319 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~-~~~~~~~~~~~~ 397 (453)
T TIGR02731 319 LLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD-SPAKILKYKVVK 397 (453)
T ss_pred eeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCC-CCceEEEEEEEE
Confidence 2233 23222222223222233455566776666656677789999999999999999998632100 123567888999
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009678 453 TPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 507 (529)
Q Consensus 453 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i 507 (529)
.|++.|...|+.....+.+++|++||||||+++..+|+++||||+.||++||++|
T Consensus 398 ~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 398 TPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 9998876667766677888899999999999999999999999999999999987
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=4.6e-43 Score=354.80 Aligned_cols=442 Identities=37% Similarity=0.680 Sum_probs=324.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCcccccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (529)
+|+|||||++||+||++|+++|++|+|+|+++.+||+++++....|+.+|.|.|++.+.++++.++++++|+.+.+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997556799999999999998999999999999987655443
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcch--hhhhc---Cc---hhhhccCCccHH
Q 009678 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAIIG---GQ---AYVEAQDGLTVQ 210 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~---~~~~~~~~~s~~ 210 (529)
....+. ...+....+.+..-.+.++.....+++ ...+++.++++...... +.... .. ......+++++.
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFV--NKGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEE--cCCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 332221 111222111111113344444555554 45677888776554331 11100 00 122345679999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcCcEEE
Q 009678 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 290 (529)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~ 290 (529)
+|+++++.++.+.+.++++++....+.+++++|+......+..+.....++...++.|+....+.+.+.+.|+++|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988878899999999999999999999998877655544444566677788777444467779999999999999
Q ss_pred ecceeeEEEecC--CC--CEEEEEEcCC---cEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEe
Q 009678 291 LNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWF 363 (529)
Q Consensus 291 ~~t~V~~I~~~~--~~--~~~~v~~~~G---~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 363 (529)
++++|++|+.++ ++ .+++|++.+| +++.||+||+|+|++.+..|+++..........+.++.+.++..++++|
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~ 317 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRY 317 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEe
Confidence 999999998743 23 2566777544 4589999999999999999998754333456778888989999999999
Q ss_pred cCCccccc--------------CcccccCC-cceeeeccccccc-cccCCCC-ceEEEEecCccccCCCChHHHHHHHHH
Q 009678 364 DRKLKNTY--------------DHLLFSSS-LLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMK 426 (529)
Q Consensus 364 ~~~~~~~~--------------~~~~~~~~-~~~~~~~~s~~~~-~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~l~ 426 (529)
+++...+. +++.+.+. ....+.+.+...+ .+.+++. .++..++.....+.+++++++++.+++
T Consensus 318 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 397 (474)
T TIGR02732 318 DGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDK 397 (474)
T ss_pred ccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHH
Confidence 97653321 11111111 1111223222122 2333444 345556666667778999999999999
Q ss_pred HHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHH
Q 009678 427 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 506 (529)
Q Consensus 427 ~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~ 506 (529)
+|.++||.... ..+......+.+...+...|++...+|..++|++|||+||||+.++|+.+||||+.||+.||+.
T Consensus 398 ~L~~~~p~~~~-----~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~ 472 (474)
T TIGR02732 398 QVRALFPSSKN-----LKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAA 472 (474)
T ss_pred HHHHhCccccC-----CceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHH
Confidence 99999996321 2455667888999999999999888899999999999999999999999999999999999998
Q ss_pred HH
Q 009678 507 IV 508 (529)
Q Consensus 507 i~ 508 (529)
|+
T Consensus 473 i~ 474 (474)
T TIGR02732 473 IL 474 (474)
T ss_pred hC
Confidence 74
No 4
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.7e-42 Score=351.95 Aligned_cols=452 Identities=35% Similarity=0.617 Sum_probs=334.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (529)
..++|+|||||++||++|+.|+++|++|+|+|+++.+||.+.++....|+.+|+|.|++.+.++++.++++++|++....
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 34699999999999999999999999999999999999999988655789999999999999999999999999987655
Q ss_pred ccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcc--hhhhhc------CchhhhccCCc
Q 009678 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAIIG------GQAYVEAQDGL 207 (529)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~ 207 (529)
+......+. ...+....+.+.-..+.++..+..++.. ..+++.++++..... .+.... ........+++
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~~-~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLTT-NQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHcC-CCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 433222121 1112111111111133344334444443 446666666654332 111000 01223345679
Q ss_pred cHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCc-cchHHHHHHHHHcC
Q 009678 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE-RLCLPIVEHIQSLG 286 (529)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~-~l~~~l~~~l~~~G 286 (529)
++.+|+++++.+.++.+.++++++....+.+++++++......+..+.....+....++.|+ +. .+++.+.+.++++|
T Consensus 231 sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg-~~~~l~~pl~~~L~~~G 309 (569)
T PLN02487 231 SFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGS-PDVRLSGPIAKYITDRG 309 (569)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCC-chHHHHHHHHHHHHHcC
Confidence 99999999988888999999999999999999999998887776443323344557788888 55 69999999999999
Q ss_pred cEEEecceeeEEEecC--CC--CEEEEEE---cCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEE
Q 009678 287 GEVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINI 359 (529)
Q Consensus 287 ~~i~~~t~V~~I~~~~--~~--~~~~v~~---~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v 359 (529)
++|+++++|.+|..+. ++ ++++|++ .+++.+.||.||+|+|++.+..|+++.......+..+.++.+.+++.+
T Consensus 310 g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 310 GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEE
Confidence 9999999999999853 33 3678887 344568999999999999999999987544455788889988999999
Q ss_pred EEEecCCcccccC--------------ccccc-CCcceeeecccccccc-c-cCCCCceEEEEecCccccCCCChHHHHH
Q 009678 360 HIWFDRKLKNTYD--------------HLLFS-SSLLSVYADMSLTCKE-Y-YNPNQSMLELVFAPAEEWISCSDSEIID 422 (529)
Q Consensus 360 ~l~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~s~~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 422 (529)
+++|+++...... ++.+. +.....+.+....... + .+....++..++.+.+.+..++++++++
T Consensus 390 ~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~ 469 (569)
T PLN02487 390 QLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVE 469 (569)
T ss_pred EEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHH
Confidence 9999987643221 00001 1111122232211111 1 1222356677788778888999999999
Q ss_pred HHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHH
Q 009678 423 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKL 502 (529)
Q Consensus 423 ~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~ 502 (529)
.++++|.++||.... ..+.+.+..+.+...|...|+....+|..++|++|||+||||+.++|+.+||||+.||.+
T Consensus 470 ~~~~~L~~~~p~~~~-----~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~ 544 (569)
T PLN02487 470 KVHKQVLELFPSSRG-----LEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQ 544 (569)
T ss_pred HHHHHHHHhCccccc-----CceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHH
Confidence 999999999997422 135566889999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHh
Q 009678 503 CAQAIVQDYVLLAA 516 (529)
Q Consensus 503 aA~~i~~~l~~~~~ 516 (529)
||+.|++....+..
T Consensus 545 AA~~i~~~~~~~~~ 558 (569)
T PLN02487 545 AAAYICEAGEELAG 558 (569)
T ss_pred HHHHHHHHhhhhhh
Confidence 99999988755543
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=316.74 Aligned_cols=424 Identities=25% Similarity=0.364 Sum_probs=291.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCcccccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 138 (529)
+|+|||||++||+||+.|+++|++|+|||+++++||++.++. .+|+.+|.|+|++...++++.++++++|++....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 689999999999999999999999999999999999999876 5689999999999888889999999999876554433
Q ss_pred cceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHcCC
Q 009678 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (529)
....+... +... +......++.. ..+...++++......... ........+.+++.+|++++ .
T Consensus 80 ~~~~~~~~---~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~ 142 (434)
T PRK07233 80 TKTGYYVD---GKLY----------PLGTPLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-S 142 (434)
T ss_pred CceEEEEC---CeEe----------cCCCHHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-c
Confidence 22222211 1110 00111111111 1223333333222211111 00112345678999999987 4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc---cCCeeeeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009678 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (529)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (529)
.....+.++.+++...++.++++++.......+....... ....+.++.|| ++.+++.|.+.+++.|++|+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6677788899999999999999999876654443321110 12235567777 8999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCccc
Q 009678 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLL 375 (529)
Q Consensus 296 ~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 375 (529)
++|+.++ +.+..+. .+|++++||+||+|+|+..+..++++.. ....+.+.++.+.+..++++.++++..... ...
T Consensus 222 ~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 296 (434)
T PRK07233 222 TSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLTDYY-WLN 296 (434)
T ss_pred eEEEEcC-CceEEEE-eCCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCCCCc-eee
Confidence 9999754 4443344 5666899999999999999999886532 334566778888899999999998753211 011
Q ss_pred cc---CCcceeeeccccccccccCCCCceEE-EEecCc-cccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEE
Q 009678 376 FS---SSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHV 450 (529)
Q Consensus 376 ~~---~~~~~~~~~~s~~~~~~~~~~~~~l~-~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~ 450 (529)
+. .++... ...+..++...+++.+++. ..+.+. ..+...+++++++.++++|.+++|+.. ...++..++
T Consensus 297 ~~~~~~~~~~~-~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~-----~~~~~~~~~ 370 (434)
T PRK07233 297 INDPGAPFGGV-IEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD-----RDDVRAVRI 370 (434)
T ss_pred ecCCCCCcceE-EEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC-----hhheeeEEE
Confidence 11 122222 2223333333334555432 223332 223356889999999999999999632 123567778
Q ss_pred eccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009678 451 VKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~ 512 (529)
.+++.+.+.+.++....++...++++||||||+++...+.++|++|+.||.+||++|+..++
T Consensus 371 ~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 371 SRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred EEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 88888877777776666777788899999999954443446899999999999999988764
No 6
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=299.41 Aligned_cols=450 Identities=40% Similarity=0.600 Sum_probs=356.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~ 137 (529)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.++++.+.+|...|+|.|+|.+.|.++.+++++++.+....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 48999999999999999999999999999999999999999998899999999999999999999999999998777766
Q ss_pred ccceee-ecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHc
Q 009678 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (529)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (529)
.....+ ..+..++.+.++.... .|.+...+..++... .+...++++.+.++............++++.++.+||+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRLP-QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhcc-ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 655555 5555566665555555 445556666666544 6677888887776665544224556788999999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc-cCCeeeeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009678 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (529)
+.........|.+......+..++..+.......+..+.... .++....++|+..+.++..+.+++.+.|.+++.+.+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 988888888999998888889999999987777777666555 5566667788778999999999999999999999999
Q ss_pred eEEEecC---CCCEEEEEEcCCc---EEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCccc
Q 009678 296 QKIELND---DGTVKNFLLTNGN---VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN 369 (529)
Q Consensus 296 ~~I~~~~---~~~~~~v~~~~G~---~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 369 (529)
+.|.... +..++++... +. .+.++.++.+.+...+...++..+.+....+.+..+...++.+++++|+...+.
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~ 317 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTE 317 (485)
T ss_pred eeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCcccc
Confidence 9998753 4446666654 43 355667777788888888889888766777888888889999999999864432
Q ss_pred cc--------Cccccc-CCcceeeeccccccccccCCCC-ceEEEEecCccccCCCChHHHHHHHHHHHHHhCCCCcccc
Q 009678 370 TY--------DHLLFS-SSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISAD 439 (529)
Q Consensus 370 ~~--------~~~~~~-~~~~~~~~~~s~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~ 439 (529)
.. .+..++ +...+.+.+....++.+..++. ..+..+..+...|...+++++.....+.+...+|.....
T Consensus 318 ~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a- 396 (485)
T COG3349 318 LTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEA- 396 (485)
T ss_pred ccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhcc-
Confidence 11 111233 3334445555555555555554 445556677777878889999999999999999875432
Q ss_pred ccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhhHHh
Q 009678 440 QSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 516 (529)
Q Consensus 440 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~~~~~ 516 (529)
+ ...+....+.+++...|+...++|...+|++|++++||++...+.++||+|..||++||+.|++.+.....
T Consensus 397 ----~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 397 ----K-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred ----c-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCc
Confidence 2 56778888999999999999999999999999999999998888889999999999999999988865433
No 7
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.3e-36 Score=310.38 Aligned_cols=422 Identities=16% Similarity=0.195 Sum_probs=279.2
Q ss_pred CeEEEECCChHHHHHHHHHHHC------CCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~------g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (529)
++|+|||||+|||+||++|++. |.+|+|||+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999976 568999999999988888899999999998
Q ss_pred CcccccccceeeecCCCCCCcccccCC--CCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccH
Q 009678 132 DRLQWKEHSMIFAMPNKPGEFSRFDFP--EVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (529)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (529)
....+......+... .+....+... ..+|... ..++ ....+++..+++....+.... ....+++|+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv 148 (463)
T PRK12416 81 EEMVYNETGISYIYS--DNTLHPIPSDTIFGIPMSV---ESLF-SSTLVSTKGKIVALKDFITKN------KEFTKDTSL 148 (463)
T ss_pred cceecCCCCceEEEE--CCeEEECCCCCeecCCCCh---HHhh-cCCcCCHHHHHHhhhhhccCC------CCCCCCCCH
Confidence 765433321111111 1111111000 0111111 1112 122334444444333322111 011356899
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh-----------------hccCCeeeeecCCCCc
Q 009678 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----------------EKHGSKMAFLDGNPPE 272 (529)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~~~~~g~~~~ 272 (529)
.+|++++ +..++.+.++.+++..++..++++++....+..+..+.. ...+..+.++.|| ++
T Consensus 149 ~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~~ 226 (463)
T PRK12416 149 ALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-LS 226 (463)
T ss_pred HHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-HH
Confidence 9999986 778888889999998888889999987643333211110 0112234455666 88
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCC
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV 352 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (529)
.|++.|++.+.+ ++|+++++|++|+.++++ + .|++.+|+++.||+||+|+|+..+..|+++.. ....+.++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~----l~~~~~~~~ 298 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-Y-EISFANHESIQADYVVLAAPHDIAETLLQSNE----LNEQFHTFK 298 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-E-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcc----hhHHHhcCC
Confidence 999999988855 589999999999986554 3 57788888899999999999999999887532 224567778
Q ss_pred CcCeEEEEEEecCCccc-ccCcccc--c-C-Ccc-eeeeccccccccccCCCCceEEEEec----CccccCCCChHHHHH
Q 009678 353 GVPVINIHIWFDRKLKN-TYDHLLF--S-S-SLL-SVYADMSLTCKEYYNPNQSMLELVFA----PAEEWISCSDSEIID 422 (529)
Q Consensus 353 ~~~~~~v~l~~~~~~~~-~~~~~~~--~-~-~~~-~~~~~~s~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~ 422 (529)
+.++.++++.|++++|. +.....+ + + +.. ......+..++...+++..++.+++. ....+.+++++++.+
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~ 378 (463)
T PRK12416 299 NSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVR 378 (463)
T ss_pred CCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHH
Confidence 88999999999976543 1122111 1 1 110 00111122222223334444444442 124466789999999
Q ss_pred HHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCC----CCCCCCCCCCeEEecccccCCCCCchHHHHH
Q 009678 423 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVL 498 (529)
Q Consensus 423 ~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~ 498 (529)
.++++|.++|+... +++.....+|..+.+.+..+.... .+.+..+.++|++||+++.+ .+|++|+.
T Consensus 379 ~~~~~L~~~lG~~~-------~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~ 448 (463)
T PRK12416 379 VALYDIEKSLGIKG-------EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIG 448 (463)
T ss_pred HHHHHHHHHhCCCC-------CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHH
Confidence 99999999998531 234566777777777665553211 12233456899999999876 58999999
Q ss_pred HHHHHHHHHHHHHh
Q 009678 499 SGKLCAQAIVQDYV 512 (529)
Q Consensus 499 Sg~~aA~~i~~~l~ 512 (529)
||+++|++|++.++
T Consensus 449 sg~~aA~~i~~~~~ 462 (463)
T PRK12416 449 NGKNTANEIIATLN 462 (463)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 8
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.3e-35 Score=303.79 Aligned_cols=418 Identities=20% Similarity=0.303 Sum_probs=284.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
++||+|||||++||+||++|+++ |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999998 999999999999999999976 5789999999999988888999999999876
Q ss_pred cccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHH
Q 009678 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (529)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (529)
...+......+... ..+.+.. .|.. +..++.. ....+..+++....... .. ....++++.+|
T Consensus 81 ~~~~~~~~~~~~~~-~~g~~~~------~p~~---~~~~~~~-~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e~ 142 (462)
T TIGR00562 81 VLVSDATGQRYVLV-NRGKLMP------VPTK---IAPFVKT-GLFSLGGKLRAGMDFIR---PA----SPGKDESVEEF 142 (462)
T ss_pred ccccCCCCceEEEE-CCCceec------CCCC---hHHHhcC-CCCCchhhHHhhhhhcc---CC----CCCCCcCHHHH
Confidence 54332111111110 0111110 1211 1122221 22333344333221110 00 12234899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHH-----------Hhhhc--------------cCCeeeeec
Q 009678 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-----------FLQEK--------------HGSKMAFLD 267 (529)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--------------~g~~~~~~~ 267 (529)
++++ +..++.+.++.++...++..++++++....+..+.. ..... .+..+..+.
T Consensus 143 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (462)
T TIGR00562 143 VRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLA 221 (462)
T ss_pred HHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecc
Confidence 9987 678888899999999999999999888765433211 11000 111122334
Q ss_pred CCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHH
Q 009678 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKR 347 (529)
Q Consensus 268 g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~ 347 (529)
|| ++.|++.|++.+.. ++|+++++|++|..+++++ .|++.+|+++.||+||+|+|+..+..++++. +....++
T Consensus 222 gG-~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~--~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~ 294 (462)
T TIGR00562 222 TG-LETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSNY--TLELDNGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSH 294 (462)
T ss_pred hh-HHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCcE--EEEECCCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHH
Confidence 44 66777788777742 6899999999999855543 4778888889999999999999999998763 3455678
Q ss_pred hhcCCCcCeEEEEEEecCCcccc-cCcccc--c-C---CcceeeeccccccccccCCCCceEEEEecC--ccccCCCChH
Q 009678 348 LEKLVGVPVINIHIWFDRKLKNT-YDHLLF--S-S---SLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDS 418 (529)
Q Consensus 348 ~~~~~~~~~~~v~l~~~~~~~~~-~~~~~~--~-~---~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ 418 (529)
+.++.+.++.++.+.|++++|.. ..+..+ . . +...+.++ +...+...+++..++..+... ..++.+.+++
T Consensus 295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~-s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~e 373 (462)
T TIGR00562 295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFT-SKLFPNRAPPGKTLLTAYIGGATDESIVDLSEN 373 (462)
T ss_pred HhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEE-ccccCCcCCCCcEEEEEEeCCCCCccccCCCHH
Confidence 88999999999999998876542 222222 1 1 22233332 223344555666666554433 2455577899
Q ss_pred HHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCC----CCCCCCCeEEecccccCCCCCchH
Q 009678 419 EIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLASME 494 (529)
Q Consensus 419 ~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~l~~aG~~~~~~~~~~~~ 494 (529)
++++.+++.|.++++... .+......+|+.+.+.+.++.....+. +..+.+|||+||+|... .+|+
T Consensus 374 e~~~~v~~~L~~~~gi~~-------~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~ 443 (462)
T TIGR00562 374 EIINIVLRDLKKVLNINN-------EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIP 443 (462)
T ss_pred HHHHHHHHHHHHHhCCCC-------CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHH
Confidence 999999999999997421 134567778888877777764332222 23445799999999874 5999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009678 495 GAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 495 gA~~Sg~~aA~~i~~~l~ 512 (529)
+|+.||+++|++|++.+.
T Consensus 444 ~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 444 DCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988763
No 9
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=1.2e-36 Score=308.44 Aligned_cols=412 Identities=19% Similarity=0.247 Sum_probs=249.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCC--cchHHHHHHHcCCCCccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~~~ 135 (529)
.+|+|||||+|||+||+.|.+.|++|+||||++++||++.+.. ..|+.+|.|++++++. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 4899999999999999999999999999999999999999864 4688999999999864 334789999999864321
Q ss_pred ccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHH
Q 009678 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (529)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (529)
.......+ ......+..+. ....+.+......+.. ....+....... .....+++|+.+|+++
T Consensus 80 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~ 142 (435)
T PLN02268 80 SGDNSVLY--DHDLESYALFD-MDGNQVPQELVTKVGE---------TFERILEETEKV-----RDEHEEDMSLLQAISI 142 (435)
T ss_pred cCCccccc--cccccccceec-CCCCCCCHHHHHHHHH---------HHHHHHHHHHHH-----HhccCCCcCHHHHHHH
Confidence 11100011 00001100000 0000111111111100 000000000000 0012356788887755
Q ss_pred cCCC------hHHHHHHHHHH---HhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcC
Q 009678 216 QGVP------DRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (529)
Q Consensus 216 ~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G 286 (529)
.... ..+.+.++..+ ...+++.++++++...... . ....|.. .++.+| +..+++.|.+ +
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~---~--~~~~g~~-~~~~~G-~~~l~~~l~~-----~ 210 (435)
T PLN02268 143 VLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ---E--ELLEGGH-GLMVRG-YDPVINTLAK-----G 210 (435)
T ss_pred HhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC---c--cccCCCc-eeecCC-HHHHHHHHhc-----c
Confidence 3100 11233333222 2344566777777643110 0 0001111 122233 4555555443 5
Q ss_pred cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh--CCCchhhhHHHHHhhcCCCcCeEEEEEEec
Q 009678 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ--LPENWKEMAYFKRLEKLVGVPVINIHIWFD 364 (529)
Q Consensus 287 ~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 364 (529)
++|+++++|++|...+++. .|++.+|+++.||+||+|+|...++.+ ...+..|....+.++++.+.+..|+.+.|+
T Consensus 211 ~~i~~~~~V~~i~~~~~~v--~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~ 288 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGV--KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFD 288 (435)
T ss_pred CceeCCCeeEEEEEcCCcE--EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeC
Confidence 6899999999999865553 588888888999999999999998753 222334555668888999999999999999
Q ss_pred CCcccccCcccccCC---cceeeeccccccccccCCCCceEEEEecC--ccccCCCChHHHHHHHHHHHHHhCCCCcccc
Q 009678 365 RKLKNTYDHLLFSSS---LLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISAD 439 (529)
Q Consensus 365 ~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~ 439 (529)
++||+......+..+ ....+.+. ....+..++.++..+ ...+..++++++++.++++|.++||....+
T Consensus 289 ~~fw~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p- 361 (435)
T PLN02268 289 SVFWPNVEFLGVVAPTSYGCSYFLNL------HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEP- 361 (435)
T ss_pred CCCCCCCceeeccCCCCCCceEEEec------ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCc-
Confidence 999975221111111 00111110 112344455543332 255667899999999999999999863221
Q ss_pred ccccEEEEEEEeccCC--ccccc-CCCC-CCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009678 440 QSKAKIVKYHVVKTPR--SVYKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 511 (529)
Q Consensus 440 ~~~~~~~~~~~~~~p~--~~~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l 511 (529)
..+..++|...|+ |.|.+ .|+. ....+.+..|+++|||||++++..|.|+|+||++||++||++|+..|
T Consensus 362 ---~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 362 ---VQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ---cEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 1234455655565 33443 2342 23345567889999999999999889999999999999999998764
No 10
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.9e-35 Score=302.10 Aligned_cols=416 Identities=21% Similarity=0.270 Sum_probs=272.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g--~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (529)
++|+|||||+|||+||+.|+++| ++|+|||+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999976 5789999999988888888999999999875433
Q ss_pred ccc-cceeeecCCCCCCcccccCCC--CCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHH
Q 009678 136 WKE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (529)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (529)
... ....+.. .+....+.... .+|.. +...+ ....+....+++..... ........+++++.+|
T Consensus 80 ~~~~~~~~~~~---~g~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~ 146 (451)
T PRK11883 80 ANTTGQSYIYV---NGKLHPIPPGTVMGIPTS---IAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAF 146 (451)
T ss_pred cCCCCcceEEE---CCeEEECCCCCeeccCCC---chhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHH
Confidence 221 1111111 11111111000 11111 11111 01222222222221111 0111123456899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh----------h-------ccCCeeeeecCCCCccch
Q 009678 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ----------E-------KHGSKMAFLDGNPPERLC 275 (529)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-------~~g~~~~~~~g~~~~~l~ 275 (529)
+++. +...+.+.++.+++...++.++++++.......+..+.. . ..+..+..+.+| +..++
T Consensus 147 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~ 224 (451)
T PRK11883 147 FRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLI 224 (451)
T ss_pred HHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHH
Confidence 9875 778888889999988888889999887655433221110 0 012334456666 78888
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcC
Q 009678 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (529)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (529)
+.|++.+.+. +|+++++|++|+.++++ + .|++.+|+++.||+||+|+|+..+..++.+. ...+.+.++.+.+
T Consensus 225 ~~l~~~l~~~--~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~ 296 (451)
T PRK11883 225 EALEEKLPAG--TIHKGTPVTKIDKSGDG-Y-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTS 296 (451)
T ss_pred HHHHHhCcCC--eEEeCCEEEEEEEcCCe-E-EEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCc
Confidence 8888877543 89999999999985444 3 5778888899999999999999999986642 2346778889999
Q ss_pred eEEEEEEecCCcccccC--ccccc-C---CcceeeeccccccccccCCCCceEEEEecC-ccc-cCCCChHHHHHHHHHH
Q 009678 356 VINIHIWFDRKLKNTYD--HLLFS-S---SLLSVYADMSLTCKEYYNPNQSMLELVFAP-AEE-WISCSDSEIIDATMKE 427 (529)
Q Consensus 356 ~~~v~l~~~~~~~~~~~--~~~~~-~---~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~l~~ 427 (529)
+.++++.|+++++.... ++.+. + +...+.. .+...+...|++..++..++.. ... ..+.+++++++.++++
T Consensus 297 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (451)
T PRK11883 297 VATVALAFPESATNLPDGTGFLVARNSDYTITACTW-TSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLAD 375 (451)
T ss_pred eEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEe-EcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHH
Confidence 99999999988522111 22222 1 1112212 2222344445566665554432 222 2356899999999999
Q ss_pred HHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCC----CCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009678 428 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 503 (529)
Q Consensus 428 l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~a 503 (529)
|.++++.... .......+|..+.+.+.++.... ++.+.. ++|||+||+++.+ .++++|+.||+++
T Consensus 376 L~~~~g~~~~-------~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~sg~~~ 444 (451)
T PRK11883 376 LSKVMGITGD-------PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQAKRA 444 (451)
T ss_pred HHHHhCCCCC-------ceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHHHHHH
Confidence 9999974211 23455666666666555553221 122222 6799999999874 5899999999999
Q ss_pred HHHHHH
Q 009678 504 AQAIVQ 509 (529)
Q Consensus 504 A~~i~~ 509 (529)
|++|++
T Consensus 445 a~~i~~ 450 (451)
T PRK11883 445 AARLLA 450 (451)
T ss_pred HHHHHh
Confidence 999975
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.1e-35 Score=306.50 Aligned_cols=426 Identities=20% Similarity=0.279 Sum_probs=278.9
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~-g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
.+.++||+|||||++||+||++|+++ |++|+|||+++++||++.+.. .+|+.+|.|+|++...++.+..++++ |++.
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~ 86 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRD 86 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChh
Confidence 34567999999999999999999999 999999999999999999976 57899999999998777778777777 8776
Q ss_pred ccccccc-ceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHH
Q 009678 133 RLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (529)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (529)
...+... ...+... .+.... .|.. ...++ ....+++.++++.......... . ....+++|+.+
T Consensus 87 ~~~~~~~~~~~~~~~--~g~~~~------~p~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~sv~~ 150 (496)
T PLN02576 87 DLVFPDPQAPRYVVW--NGKLRP------LPSN---PIDLP-TFDLLSAPGKIRAGLGAFGWKR---P-PPPGREESVGE 150 (496)
T ss_pred heecCCCCceEEEEE--CCEEEE------cCCC---hHHhc-CcCcCChhHHHHHhHHHhhccC---C-CCCCCCCcHHH
Confidence 5443221 1111110 111111 1111 11111 1233444455443322211100 0 01245689999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHH---------------hhhc---------------cCC
Q 009678 212 WMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQEK---------------HGS 261 (529)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~---------------~g~ 261 (529)
|++++ +..++.+.++.++...+++.++++++....+..+... .... .+.
T Consensus 151 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (496)
T PLN02576 151 FVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQ 229 (496)
T ss_pred HHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCC
Confidence 99987 8889999999999999999999999887654432211 0000 011
Q ss_pred eeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCC-CEEEEEEcCCc-EEecCEEEEccCHHHHhhhCCCch
Q 009678 262 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDAYVFATPVDILKLQLPENW 339 (529)
Q Consensus 262 ~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-~~~~v~~~~G~-~i~ad~VI~a~~~~~~~~l~~~~~ 339 (529)
......|| ++.|++.|++.+.+ .+|++|++|++|+..+++ +.+.+.+.+|+ ++.||+||+|+|+..+..++++.
T Consensus 230 ~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~- 305 (496)
T PLN02576 230 TVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK- 305 (496)
T ss_pred eeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc-
Confidence 12223444 77888888876621 579999999999986555 33233444553 69999999999999999998753
Q ss_pred hhhHHHHHhhcCCCcCeEEEEEEecCCcccc-------cCcccccC------CcceeeeccccccccccCCCCceEEEEe
Q 009678 340 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDHLLFSS------SLLSVYADMSLTCKEYYNPNQSMLELVF 406 (529)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-------~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~l~~~~ 406 (529)
+....+.+.++.+.++.++.+.|++++|.. .....+.. +..+..+ .+...+...+++..++..+.
T Consensus 306 -~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~~~ 383 (496)
T PLN02576 306 -SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLNYI 383 (496)
T ss_pred -CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEEEE
Confidence 234567788899999999999999987753 11111100 0111111 12223334445554444333
Q ss_pred cC--ccccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCC---CCC--CCeE
Q 009678 407 AP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EGFY 479 (529)
Q Consensus 407 ~~--~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~--~~l~ 479 (529)
.. ...+.+.+++++++.++++|.+++|....+. .......+|+.+.+.+.+++....+..+ ... +|||
T Consensus 384 ~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~-----p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~ 458 (496)
T PLN02576 384 GGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPP-----PKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLF 458 (496)
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCC-----CcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEE
Confidence 32 2556678899999999999999998532111 1223455677777777666432221111 122 7999
Q ss_pred EecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009678 480 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 480 ~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~ 512 (529)
+||+|+.+ .++++|+.||.++|++|+..+.
T Consensus 459 ~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 459 LGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred EeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999985 5999999999999999998875
No 12
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.4e-34 Score=291.48 Aligned_cols=414 Identities=29% Similarity=0.432 Sum_probs=280.4
Q ss_pred HHHHHHHHCCCCeEEEeccccCCceeEeeccCCC--CeeeeeeeeecCCcchHHHHHHHcCCCCcccccccceeeecCCC
Q 009678 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGDG--DWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNK 148 (529)
Q Consensus 71 saA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~ 148 (529)
+||+.|+++|++|+|||+++++||++.++. .+| +.+|.|+|++.+.++++.++++++|++....+......+.. .
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~--~ 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYD--P 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceec--C
Confidence 589999999999999999999999999976 343 45999999999888999999999999865442221222211 1
Q ss_pred CCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHcCCChHHHHHHHH
Q 009678 149 PGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFI 228 (529)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 228 (529)
.+....+... .++.+......+. ....++...+.+....+...... .....+.+++.+|+++++.++.+.+.++.
T Consensus 78 ~~~~~~~~~~-~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 152 (419)
T TIGR03467 78 GGRLSRLRLS-RLPAPLHLARGLL-RAPGLSWADKLALARALLALRRT---RFRALDDTTVGDWLQAAGQSERLIERLWE 152 (419)
T ss_pred CCCceeecCC-CCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhc---CccccCCCCHHHHHHHcCCCHHHHHHHHH
Confidence 1111111111 1233322222222 23334444444433222211110 01245679999999998878888888999
Q ss_pred HHHhhcCCCCCccccHHHHHHHHHH-HhhhccCCeeeeecCCCCccch-HHHHHHHHHcCcEEEecceeeEEEecCCCCE
Q 009678 229 AMSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTV 306 (529)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~g~~~~~l~-~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~ 306 (529)
+++...++.++++++.......+.. +.....+....++.|| +..++ +.|++.+++.|++|++|++|++|+.++++..
T Consensus 153 p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~ 231 (419)
T TIGR03467 153 PLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIR 231 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcce
Confidence 9999888899999998777665543 2222223346677776 45554 5588899899999999999999998655533
Q ss_pred EEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCcccccCCcceeeec
Q 009678 307 KNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYAD 386 (529)
Q Consensus 307 ~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (529)
+ +.+.+|+++.||+||+|+|++.+..++++. ...+.+.++.+.++.++++.|++++|.+.....+.........+
T Consensus 232 ~-~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (419)
T TIGR03467 232 A-LVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQWLFD 306 (419)
T ss_pred E-EEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCceeEEEE
Confidence 2 223467789999999999999999998762 23466788888999999999999987543322222111111122
Q ss_pred cccccccccCCCCceEEEEecCccccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCC
Q 009678 387 MSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP 466 (529)
Q Consensus 387 ~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 466 (529)
.+. .++...++..+......+...+++++.+.++++|.++||..... .+...++.++..+.+.+.++...
T Consensus 307 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~ 376 (419)
T TIGR03467 307 RGQ-----LAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGA-----KPLWARVIKEKRATFAATPGLNR 376 (419)
T ss_pred CCc-----CCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccC-----CccceEEEEccCCccccCCcccc
Confidence 111 11222344444444556667889999999999999999864211 12333445555666666666555
Q ss_pred CCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009678 467 CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 508 (529)
Q Consensus 467 ~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~ 508 (529)
.++.+.+|++|||||||+++++|+++||||+.||.+||++|+
T Consensus 377 ~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 377 LRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 667677889999999999999888899999999999999986
No 13
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=280.25 Aligned_cols=428 Identities=19% Similarity=0.166 Sum_probs=266.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCcc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (529)
.+.+||||||||++||++|++|.|.|++|+|||+++++|||+.+.+. .+...|+|++++.+.+..+..+.+++|+....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 57889999999999999999999999999999999999999999875 78899999999988777889999999998765
Q ss_pred cccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHH
Q 009678 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (529)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (529)
.+............... .|.........+.... ..+....+....+ .....+...+.+.+++.+| +
T Consensus 84 fi~~g~~~~~~~~~~~~---------~p~~~~~~~~d~~~~~-~~~~~~a~~~~~~---~~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKS---------TPKRSLTAAADVRGLV-AELEAKARSAGEL---DPGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCcccccccccccc---------cchhccchhhhhcchh-hhhhhhhhccccc---CcccCcchhhhhhHHHHhh-h
Confidence 54433222211111110 0111101111110000 0000000000000 0111122234455666666 1
Q ss_pred HcCCChHHHHHHHHHHHhhc--CCCCCccccHHHHHHHHHHHh------hhccCCeeeeecCCCCccchHHHHHHHHHcC
Q 009678 215 KQGVPDRVTTEVFIAMSKAL--NFINPDELSMQCILIALNRFL------QEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 286 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G 286 (529)
.. .. +.+-....... ....+.+.............. ...........-|| ++.+.+++++.+ |
T Consensus 150 ~~--~~---~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~Afa~ql---~ 220 (450)
T COG1231 150 TS--SL---RGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAEAFAKQL---G 220 (450)
T ss_pred hc--cc---cccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHHHHHHHh---h
Confidence 10 00 00000000001 112222222221111111111 11111111112244 778877777766 4
Q ss_pred cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCC
Q 009678 287 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK 366 (529)
Q Consensus 287 ~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 366 (529)
-.|.++++|.+|.+.++++ .|++.+.+++.+|.||+|+|..++.++..++..+..+.+++..+.|.+..|+.+.|+++
T Consensus 221 ~~I~~~~~V~rI~q~~~gV--~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rp 298 (450)
T COG1231 221 TRILLNEPVRRIDQDGDGV--TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRP 298 (450)
T ss_pred ceEEecCceeeEEEcCCeE--EEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCch
Confidence 5899999999999976664 58888844899999999999999999976666677888899999999999999999999
Q ss_pred cccccC---cccccCCcceeeeccccccccccCCCCceEEEEe---cCccccCCCChHHHHHHHHHHHHHhCCCCccccc
Q 009678 367 LKNTYD---HLLFSSSLLSVYADMSLTCKEYYNPNQSMLELVF---APAEEWISCSDSEIIDATMKELAKLFPDEISADQ 440 (529)
Q Consensus 367 ~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~ 440 (529)
||+..+ +..+.+..+..... .......|..|+...+ .++..|..+++++..+.++.++.++||+......
T Consensus 299 FWee~~~l~G~~~tD~~~~~i~~----~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f 374 (450)
T COG1231 299 FWEEAGILGGESLTDLGLGFISY----PSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPF 374 (450)
T ss_pred hhhhcccCCceEeecCCcceEec----CccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhcccc
Confidence 998644 33333222222111 1112335566665422 3458888999999999999999999996443332
Q ss_pred cccEEEEEEEeccCCcccc-cCCC-CCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009678 441 SKAKIVKYHVVKTPRSVYK-TIPN-CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 441 ~~~~~~~~~~~~~p~~~~~-~~~~-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~ 512 (529)
......+|.-..|..|.+. +.|+ ..++.+.+..|.++|+|||.+..+.|.|+++||+.||++||.+|...+.
T Consensus 375 ~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 375 DYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred ccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 2223334444444445333 3344 4456677888999999999777777889999999999999999988764
No 14
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.2e-34 Score=293.48 Aligned_cols=421 Identities=20% Similarity=0.195 Sum_probs=256.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccccCCceeEeeccCCCCeeeeeeeeecC----CcchHHHHHHHcC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGELG 129 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg 129 (529)
+..+||+|||||++||+||++|++.|. +|+|||+++++||++.+.. ..|+.+|.|++++.+ ....+.++++++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 356799999999999999999999998 6999999999999998865 468899999999964 3345778999999
Q ss_pred CCCccccccc-c-eeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCc
Q 009678 130 INDRLQWKEH-S-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (529)
Q Consensus 130 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (529)
+......... . .++.. ++.. .+ ......+.. .......+........ .....++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~---~g~~--------~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQ---DGGL--------YP--KKVVQKSMK---------VADASDEFGENLSISL-SAKKAVDI 159 (487)
T ss_pred CceeecCccccceeEECC---CCCC--------CC--HHHHHHHHH---------HHHHHHHHHHHHHHhh-cccCCCCc
Confidence 8754221110 1 11110 1110 00 000101000 0000000000000000 00112234
Q ss_pred cH--HHHHHHcCCChHHHHHHHHHHHh--hcCCCCCccccHHHHHHHHHHHhhhccCCeeeee--cCCCCccchHHHHHH
Q 009678 208 TV--QEWMRKQGVPDRVTTEVFIAMSK--ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLPIVEH 281 (529)
Q Consensus 208 s~--~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~g~~~~~l~~~l~~~ 281 (529)
++ .+++.+. ......... ..+.. ..++.++++++...... ...+. ..|....++ .+| .+.+++.|++.
T Consensus 160 s~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~--~~~~~-~~g~~~~~~~~~~G-~~~l~~~La~~ 233 (487)
T PLN02676 160 SILTAQRLFGQ-VPKTPLEMV-IDYYNYDYEFAEPPRVTSLKNTEP--NPTFV-DFGEDEYFVADPRG-YESLVYYLAEQ 233 (487)
T ss_pred cHHHHHHHHhh-CCCCHHHHH-HHHHhccceeccCccccchhhcCc--ccccc-cCCCceEEeecCCC-HHHHHHHHHhh
Confidence 44 2333322 110111111 11111 11355667776644321 00111 122222233 334 78889999887
Q ss_pred HHHc------CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh--hCCCchhhhHHHHHhhcCCC
Q 009678 282 IQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVG 353 (529)
Q Consensus 282 l~~~------G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--l~~~~~~~~~~~~~~~~~~~ 353 (529)
+.++ +.+|++|++|++|..++++ + .|+|.+|++++||+||+|+|..+++. +..++..|....++++++.+
T Consensus 234 ~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~ 311 (487)
T PLN02676 234 FLSTKSGKITDPRLKLNKVVREISYSKNG-V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDM 311 (487)
T ss_pred cccccccccCCCceecCCEeeEEEEcCCc-E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCc
Confidence 7543 2579999999999986555 3 58899998899999999999999986 44444445566788899999
Q ss_pred cCeEEEEEEecCCccccc-Cccccc--CCcceeeecccccc-ccccCCCCceEEEEecC--ccccCCCChHHHHHHHHHH
Q 009678 354 VPVINIHIWFDRKLKNTY-DHLLFS--SSLLSVYADMSLTC-KEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKE 427 (529)
Q Consensus 354 ~~~~~v~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~s~~~-~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~ 427 (529)
....|+.+.|+++||+.- ....+. ......+ .... .....++..++.+++.. ...|..+++++..+.++++
T Consensus 312 g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~ 388 (487)
T PLN02676 312 AVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYY---PFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEV 388 (487)
T ss_pred eeeEEEEEEeCCCCCCCCCCceeeeeeccccccc---hhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999751 111111 0000000 0000 00112333444443332 2556678899999999999
Q ss_pred HHHhCCCCccccccccEEEEEEEeccCC--cccccC-CCC-CCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009678 428 LAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKTI-PNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 503 (529)
Q Consensus 428 l~~~~p~~~~~~~~~~~~~~~~~~~~p~--~~~~~~-~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~a 503 (529)
|.++||..... ...+..+.|...|+ |.|.+. |+. ....+.++.|+++|||||++++..|.|+|+||+.||+++
T Consensus 389 L~~~~g~~~~~---p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~Ra 465 (487)
T PLN02676 389 LRKMFGPNIPE---ATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDT 465 (487)
T ss_pred HHHHhCCCCCC---cceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHH
Confidence 99999853321 22345556666666 444433 442 333456678899999999999998999999999999999
Q ss_pred HHHHHHHHhh
Q 009678 504 AQAIVQDYVL 513 (529)
Q Consensus 504 A~~i~~~l~~ 513 (529)
|++|+..++.
T Consensus 466 A~~I~~~l~~ 475 (487)
T PLN02676 466 ANDLLECIKK 475 (487)
T ss_pred HHHHHHHhcc
Confidence 9999998854
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-34 Score=280.02 Aligned_cols=409 Identities=23% Similarity=0.320 Sum_probs=285.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g--~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (529)
+.|+|||||++||+|||+|+|++ .+|+|||+.+++||.+.++. .+|+.+|.|+|.+...-..+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999998 89999999999999999985 7999999999988866567899999999998877
Q ss_pred cccccee-eecCCCCCCcccccCCC--CCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHH
Q 009678 136 WKEHSMI-FAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (529)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (529)
+...... +.. .+++..+.... .+|.. .........+.+.... ........++.++.+|
T Consensus 80 ~~~~~~~~i~~---~gkl~p~P~~~i~~ip~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~~d~sv~~f 140 (444)
T COG1232 80 WNSTARKYIYY---DGKLHPIPTPTILGIPLL--------------LLSSEAGLARALQEFI--RPKSWEPKQDISVGEF 140 (444)
T ss_pred cCCcccceEee---CCcEEECCccceeecCCc--------------cccchhHHHHHHHhhh--cccCCCCCCCcCHHHH
Confidence 5543322 111 12222111111 01111 1100111111111110 0111223467899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCC------------------eeeeecCCCCccc
Q 009678 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS------------------KMAFLDGNPPERL 274 (529)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------~~~~~~g~~~~~l 274 (529)
++++ +.+++.+.++.++...+++.+.+++|............ ..+++ .+.+..|| ++.|
T Consensus 141 ~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e-~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l 217 (444)
T COG1232 141 IRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAE-RKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSL 217 (444)
T ss_pred HHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhh-hhhcchhhhhhhccCcccccccccccccCcc-HHHH
Confidence 9998 88999999999999999999999999874433222111 11111 24445555 8899
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCc
Q 009678 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGV 354 (529)
Q Consensus 275 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (529)
+++|.+.+..+ |+++++|++|.++.++. .+.+.+|+.+.||.||+|+|++.+..++++. ...+...++.+.
T Consensus 218 ~~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~ 288 (444)
T COG1232 218 IEALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYT 288 (444)
T ss_pred HHHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhcccc
Confidence 99999988765 99999999999864444 4667788889999999999999999999872 233667778888
Q ss_pred CeEEEEEEecCCc-ccccC--ccccc--CCcceeeeccccccccccCCCCceEEEEecCc-ccc-CCCChHHHHHHHHHH
Q 009678 355 PVINIHIWFDRKL-KNTYD--HLLFS--SSLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEW-ISCSDSEIIDATMKE 427 (529)
Q Consensus 355 ~~~~v~l~~~~~~-~~~~~--~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~~~~l~~ 427 (529)
++.++.+.++++- ....+ .+.+. ++.+......|..++...|.+.+++.+.+... .++ ..++||++++.+++.
T Consensus 289 s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~ 368 (444)
T COG1232 289 SVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDD 368 (444)
T ss_pred ceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHH
Confidence 8888888888851 11112 22233 33233333445566666666887877665543 333 356799999999999
Q ss_pred HHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCC----CCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009678 428 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR----PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 503 (529)
Q Consensus 428 l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~a 503 (529)
|.++++....+ ..++..+|+.+.+.|..++...+ ..+....+||+.+|.+..+ -++++|+.+|..|
T Consensus 369 L~~~~~~~~~~-------~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~a 438 (444)
T COG1232 369 LKKLGGINGDP-------VFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEA 438 (444)
T ss_pred HHHHcCcCcch-------hheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHH
Confidence 99999864332 26778889999999988854433 2333234899999988764 3899999999999
Q ss_pred HHHHH
Q 009678 504 AQAIV 508 (529)
Q Consensus 504 A~~i~ 508 (529)
|++|+
T Consensus 439 a~~l~ 443 (444)
T COG1232 439 AEQLL 443 (444)
T ss_pred HHHhh
Confidence 99986
No 16
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1e-33 Score=290.51 Aligned_cols=424 Identities=20% Similarity=0.263 Sum_probs=279.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (529)
..+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 467999999999999999999999999999999999999998865 5789999999999988889999999998633322
Q ss_pred ccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHH
Q 009678 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (529)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (529)
.......... .+.+.. +|.. ....+. .+.+....+......... .....+++++.+|+++
T Consensus 82 ~~~~~~~~~~---~g~~~~------~p~~---~~~~l~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 82 LRPRLSRIYY---RGKFFD------YPLK---AFDALK---NLGLWRTAKCGASYLKAR-----LRPRKEEDSFEDWVIN 141 (479)
T ss_pred cccccceEEE---CCEEec------CCcc---hhHHHH---hCCHhHHHHHHHHHHHHh-----cCCCCCCCCHHHHHHH
Confidence 2111111111 111111 1111 011111 112222222221111110 0011256899999998
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHH---------HHHHhhhc-------------cCCeeeeecCCCCcc
Q 009678 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA---------LNRFLQEK-------------HGSKMAFLDGNPPER 273 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------~g~~~~~~~g~~~~~ 273 (529)
. +..++.+.++.++...+++.++++++....... +...+... ....+.++.|| ++.
T Consensus 142 ~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~ 219 (479)
T PRK07208 142 R-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PGQ 219 (479)
T ss_pred h-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cch
Confidence 6 788899999999999999999999988653311 11111110 01235566666 789
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCCc--EEecCEEEEccCHHHHhhhCCCchhhhHHHHHhh
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 349 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~--~~G~--~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~ 349 (529)
|++.|.+.+++.|++|+++++|++|..++++.+..++. .+|+ ++.||+||+|+|++.+..++++.. +......+.
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~-~~~~~~~~~ 298 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPP-PPEVRAAAA 298 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCC-CHHHHHHHh
Confidence 99999999999999999999999999865665444443 2453 588999999999998888776432 334556677
Q ss_pred cCCCcCeEEEEEEecCCcccccCcccccCCc--ceeeeccccccccccCCCCc-eEEEEe--cC-ccccCCCChHHHHHH
Q 009678 350 KLVGVPVINIHIWFDRKLKNTYDHLLFSSSL--LSVYADMSLTCKEYYNPNQS-MLELVF--AP-AEEWISCSDSEIIDA 423 (529)
Q Consensus 350 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~-~l~~~~--~~-~~~~~~~~~~~~~~~ 423 (529)
.+.+.++.++++.++++...+...+.+..+. .+.....+...+...|++.. .+.+.+ .. ...| +++++++++.
T Consensus 299 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~-~~~deel~~~ 377 (479)
T PRK07208 299 GLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLW-NMSDEDLIAL 377 (479)
T ss_pred CCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccc-cCCHHHHHHH
Confidence 8888888999999998753322111111111 11111112223444566653 332222 22 2344 6889999999
Q ss_pred HHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCC---CCCCCCCeEEecccccCCCCCchHHHHHHH
Q 009678 424 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASMEGAVLSG 500 (529)
Q Consensus 424 ~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg 500 (529)
++++|.++.+ .. ...+....+.+++.+.+.+..++....+. ..++.+|||+||++....| .++++|+.||
T Consensus 378 ~~~~L~~l~~--~~----~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~a~~sg 450 (479)
T PRK07208 378 AIQELARLGL--IR----PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDHSMLTA 450 (479)
T ss_pred HHHHHHHcCC--CC----hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhHHHHHH
Confidence 9999999733 11 12366777888888888777664332221 2356789999998876655 4999999999
Q ss_pred HHHHHHHHHHH
Q 009678 501 KLCAQAIVQDY 511 (529)
Q Consensus 501 ~~aA~~i~~~l 511 (529)
+++|+.|+...
T Consensus 451 ~~~a~~i~~~~ 461 (479)
T PRK07208 451 MLAVENIIAGE 461 (479)
T ss_pred HHHHHHHhcCC
Confidence 99999987763
No 17
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-34 Score=288.40 Aligned_cols=423 Identities=26% Similarity=0.321 Sum_probs=252.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcch-HHHHHHHcCCCC
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIND 132 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~ 132 (529)
..+.++|||||||+|||+||++|.+.|++|+||||++++|||+.++....+.++|+|++++.+.+.+ +.-+.+++|++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~ 91 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLEL 91 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccc
Confidence 4467899999999999999999999999999999999999999998877777899999999999985 677889999876
Q ss_pred cccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcC-------CC----CChHHHHHHhhcchhhhhcCchhh
Q 009678 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN-------EM----LTWPEKVKFAIGLLPAIIGGQAYV 201 (529)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~ 201 (529)
... .....++...+ ......+....+...+.+....... .. .+..+.........
T Consensus 92 ~~~-~~~~~l~~~~~---~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------- 157 (501)
T KOG0029|consen 92 YKV-RDTCPLFNENG---GESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSAS---------- 157 (501)
T ss_pred cee-cccccccccCC---cccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHH----------
Confidence 322 11112221111 1111111111111111111110000 00 00000000000000
Q ss_pred hccCCccHHHHHHHcCCChHHHHHHHHHHHhhcC--CC-CCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHH
Q 009678 202 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALN--FI-NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPI 278 (529)
Q Consensus 202 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l 278 (529)
.......++..++.... .+...+..+. .. ..+.++. ............+ ......+| ...++..+
T Consensus 158 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~-~~~~~~~G-~~~v~~~l 225 (501)
T KOG0029|consen 158 ---RLMKTLLELLLEGEADK----VLQWHLVNLELTFIAHLENASA---RLWDQDELFGGGG-IHLLMKGG-YEPVVNSL 225 (501)
T ss_pred ---HHHHhhHHHhhhhhhhH----HHHHHHHHHHHHhhccHhHhhH---Hhhhhhhhccccc-chhHhhCC-ccHHHhhc
Confidence 00001111111111111 1111111111 01 1111111 1111111111111 11223333 44555555
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh--hCCCchhhhHHHHHhhcCCCcCe
Q 009678 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPV 356 (529)
Q Consensus 279 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~ 356 (529)
+. |..|+++..|.+|.+.+++. +.+++.++..+.+|+||+++|..+++. +...+..|..+.++++++....+
T Consensus 226 a~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~ 299 (501)
T KOG0029|consen 226 AE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLV 299 (501)
T ss_pred CC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCce
Confidence 54 78999999999999977775 245556666699999999999999888 55555667788899999999999
Q ss_pred EEEEEEecCCcccc-cCcccccCC---cce--eeeccccccccccCCCCceEEEEecC--ccccCCCChHHHHHHHHHHH
Q 009678 357 INIHIWFDRKLKNT-YDHLLFSSS---LLS--VYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKEL 428 (529)
Q Consensus 357 ~~v~l~~~~~~~~~-~~~~~~~~~---~~~--~~~~~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l 428 (529)
.||.+.|++.||.. .+..+.... ..+ .+.+.. .. .+..++...... ...+.+++++++++.+++.|
T Consensus 300 ~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~----~~--~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l 373 (501)
T KOG0029|consen 300 NKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCK----PV--AGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLL 373 (501)
T ss_pred eEEEEEeccccCCCCcCeEEEccccccccchhhhhhcC----cc--CCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHH
Confidence 99999999999952 221111111 111 111111 11 111233333332 46778999999999999999
Q ss_pred HHhCCCCccccccccEEEEEEEeccCCcccccCCC-CCCC-CCCCCCCCCC-eEEecccccCCCCCchHHHHHHHHHHHH
Q 009678 429 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPN-CEPC-RPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQ 505 (529)
Q Consensus 429 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~-~~~~~~~~~~-l~~aG~~~~~~~~~~~~gA~~Sg~~aA~ 505 (529)
.++|+....+++....+.+|.......+.|.+.+- .... ...+..|+.| +||||++++..|.++|+||+.||.++|.
T Consensus 374 ~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~ 453 (501)
T KOG0029|consen 374 RKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAAS 453 (501)
T ss_pred HHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHH
Confidence 99999433334445566666666666677765442 2211 2445678888 9999999999999999999999999999
Q ss_pred HHHHHHhhH
Q 009678 506 AIVQDYVLL 514 (529)
Q Consensus 506 ~i~~~l~~~ 514 (529)
.|++.+...
T Consensus 454 ~i~~~~~~~ 462 (501)
T KOG0029|consen 454 DILDSLIEI 462 (501)
T ss_pred HHHHHHHhh
Confidence 999999853
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.2e-33 Score=292.50 Aligned_cols=418 Identities=18% Similarity=0.193 Sum_probs=251.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccC-CC--CeeeeeeeeecCCcch-HHHHHHHcCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~-~g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (529)
...+||+|||||++||+||..|+++|++|+|||+++++||++.+.... +| ..+|+|++|+++...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 456799999999999999999999999999999999999999987633 23 3789999999987776 7789999998
Q ss_pred CCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHH
Q 009678 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (529)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (529)
+.... .....++.. ++...... .. ..+...+ ...++....+..... ...++.|+.
T Consensus 238 ~~~~~-~~~~~~~~~---~G~~v~~~----~~---~~~~~~~--------~~~l~~~~~l~~~~~------~~~~d~Sl~ 292 (738)
T PLN02529 238 PLHKV-RDNCPLYKP---DGALVDKE----ID---SNIEFIF--------NKLLDKVTELRQIMG------GFANDISLG 292 (738)
T ss_pred Ccccc-CCCceEEeC---CCcCcchh----hh---hhHHHHH--------HHHHHHHHHHHHhcc------cCccCCCHH
Confidence 65422 111112211 11100000 00 0000000 000000000000000 123457888
Q ss_pred HHHHHcC------CChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHH
Q 009678 211 EWMRKQG------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 211 ~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
+++++.. .. .....++........+.....++.......... .....+.....+.|| ++.+++.|++.
T Consensus 293 ~~le~~~~~~~~~~t-~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~-~~~e~~G~~~~i~GG-~~~Li~aLA~~--- 366 (738)
T PLN02529 293 SVLERLRQLYGVARS-TEERQLLDWHLANLEYANAGCLSDLSAAYWDQD-DPYEMGGDHCFLAGG-NWRLINALCEG--- 366 (738)
T ss_pred HHHHHHHhhhccCCC-HHHHHHHHHHHHHhceecCCChHHhhhhHhhhc-cccccCCceEEECCc-HHHHHHHHHhc---
Confidence 8887542 11 112234443333333334444433322211111 011222334445555 67777777753
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh--hCCCchhhhHHHHHhhcCCCcCeEEEEEE
Q 009678 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIW 362 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 362 (529)
+.|++|++|++|...++++ .|++ +++++.||+||+|+|..+++. +...+..|..+.++++++.+.++.|+.+.
T Consensus 367 --L~IrLnt~V~~I~~~~dGV--tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~ 441 (738)
T PLN02529 367 --VPIFYGKTVDTIKYGNDGV--EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMV 441 (738)
T ss_pred --CCEEcCCceeEEEEcCCeE--EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEE
Confidence 4699999999999865553 4655 445799999999999999984 32233345566788999999999999999
Q ss_pred ecCCcccccCc-cccc---C-C--cceeeeccccccccccCCCCceEEEEec-C-ccccCCCChHHHHHHHHHHHHHhCC
Q 009678 363 FDRKLKNTYDH-LLFS---S-S--LLSVYADMSLTCKEYYNPNQSMLELVFA-P-AEEWISCSDSEIIDATMKELAKLFP 433 (529)
Q Consensus 363 ~~~~~~~~~~~-~~~~---~-~--~~~~~~~~s~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~l~~~~p 433 (529)
|+++||..... +.+. . . ....+.+. ...++..++..+.. . +..+..++++++++.++++|.++|+
T Consensus 442 F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~------~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifg 515 (738)
T PLN02529 442 FPSVFWGEELDTFGCLNESSNKRGEFFLFYGY------HTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYN 515 (738)
T ss_pred eCCccccCCCCceEEEeccCCCCceEEEEecC------CCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 99999964221 1111 0 0 00111110 11123334443333 2 2556678899999999999999997
Q ss_pred CCccccccccEEEEEEEeccCC--cccccCC-CC-CCCCCCCCCC-CCCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009678 434 DEISADQSKAKIVKYHVVKTPR--SVYKTIP-NC-EPCRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 508 (529)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~-~~-~~~~~~~~~~-~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~ 508 (529)
......+....++..+|...|+ |.|.+.+ +. ......+..| .++|||||++++..|+++|+||+.||+++|++|+
T Consensus 516 p~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl 595 (738)
T PLN02529 516 PKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRIL 595 (738)
T ss_pred ccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHH
Confidence 3111100112344556665555 4444432 21 1111223344 5899999999999999999999999999999999
Q ss_pred HHHhhH
Q 009678 509 QDYVLL 514 (529)
Q Consensus 509 ~~l~~~ 514 (529)
+.+++.
T Consensus 596 ~~l~~~ 601 (738)
T PLN02529 596 HVARSQ 601 (738)
T ss_pred HHHhhh
Confidence 988664
No 19
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=1.7e-32 Score=281.92 Aligned_cols=432 Identities=22% Similarity=0.247 Sum_probs=259.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCC--cchHHHHHHHcCCCCc-
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDR- 133 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~- 133 (529)
+.||+|||||++||+||..|+++|++|+|||+++++||++.++. .+|+.+|.|+|++.+. ...+..+++++|++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~ 79 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPE 79 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcc
Confidence 36999999999999999999999999999999999999999987 5899999999998753 2336788899998632
Q ss_pred ccccccceeeecCCCCCCcccccCCC-----------CCCCchh---HHHHHHh-------cCCCC---ChHHHHHHhhc
Q 009678 134 LQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLN---GILAILR-------NNEML---TWPEKVKFAIG 189 (529)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~-------~~~~~---~~~~~~~~~~~ 189 (529)
............. ++.. .+.+.. ..|.... .+..... ....+ ...+..+....
T Consensus 80 ~~~~d~~~~~~~~--dg~~-~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (492)
T TIGR02733 80 AKILDPACAVDLP--DGSE-PIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSA 156 (492)
T ss_pred cccCCCCcEEEEC--CCce-EeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Confidence 1111111111111 1100 011000 0111110 0000000 00000 00011100000
Q ss_pred chhhhhcCchhhhccCCccHHHHHHHcC-CChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecC
Q 009678 190 LLPAIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG 268 (529)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 268 (529)
+... ..........++.+|+++.+ +..+..+.++...........+++.+.......+. +.....| ..++.|
T Consensus 157 ~~~~----~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G--~~~~~G 229 (492)
T TIGR02733 157 LRPD----TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ-MAQAPHG--LWHLHG 229 (492)
T ss_pred cChh----hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh-ccccCCC--ceeecC
Confidence 0000 00111223578899998764 34444555554433333344555655544322111 1111122 234666
Q ss_pred CCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-----cEEecCEEEEccCHHHHhhhCCCchhhhH
Q 009678 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMA 343 (529)
Q Consensus 269 ~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-----~~i~ad~VI~a~~~~~~~~l~~~~~~~~~ 343 (529)
| ++.|++.|.+.++++|++|+++++|++|..+ ++.+.+|.+.+| +++.||+||+|+++..+..|+++...+..
T Consensus 230 G-~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~ 307 (492)
T TIGR02733 230 S-MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPG 307 (492)
T ss_pred c-HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHH
Confidence 6 8999999999999999999999999999985 444445655554 57999999999999988888876444445
Q ss_pred HHHHhhcCCCcC-eEEEEEEecCCccc--ccCccccc-CCcceeeeccccccccccCCCCceEE-EEecCccccCCC---
Q 009678 344 YFKRLEKLVGVP-VINIHIWFDRKLKN--TYDHLLFS-SSLLSVYADMSLTCKEYYNPNQSMLE-LVFAPAEEWISC--- 415 (529)
Q Consensus 344 ~~~~~~~~~~~~-~~~v~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~l~-~~~~~~~~~~~~--- 415 (529)
+.+.+.++.+.+ .+++++.+++.... ......+. ++...+|...+..++..+|+|.+++. .++++...|..+
T Consensus 308 ~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~ 387 (492)
T TIGR02733 308 YRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEE 387 (492)
T ss_pred HHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHH
Confidence 566677777665 55788988873211 11111111 22123444444445667888887764 445555555322
Q ss_pred ----ChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcc-----------cccCC---CCCCCCCCCCCCCCC
Q 009678 416 ----SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-----------YKTIP---NCEPCRPLQRSPVEG 477 (529)
Q Consensus 416 ----~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~---~~~~~~~~~~~~~~~ 477 (529)
.++++.+.+++.|++.+|+... -+......+|.+. |+..+ +...+++..+++++|
T Consensus 388 ~y~~~k~~~~~~il~~le~~~p~l~~-------~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~g 460 (492)
T TIGR02733 388 DYTAKKKQYTQTIIERLGHYFDLLEE-------NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKG 460 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccc-------cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCC
Confidence 2466888999999999997421 2334444555532 22211 122233444789999
Q ss_pred eEEecccccCCCCCchHHHHHHHHHHHHHHHHH
Q 009678 478 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 510 (529)
Q Consensus 478 l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~ 510 (529)
||+||++++++ +|+.+|+.||+.+|++|+..
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 461 LWLCGDSIHPG--EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred eEEecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence 99999999986 79999999999999999753
No 20
>PLN02568 polyamine oxidase
Probab=100.00 E-value=4.5e-33 Score=283.52 Aligned_cols=439 Identities=18% Similarity=0.190 Sum_probs=248.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-----CCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCc-chHHHHHHHcC
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELG 129 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-----~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg 129 (529)
+..||+|||||++||+||+.|++.| ++|+|||+++++||++.+.. ..|+.+|.|++++++.. ..+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 3569999999999999999999887 89999999999999999976 56889999999999754 44789999999
Q ss_pred CCCccc-ccccceeeecCCCCCCcccccCCC-CCCC-chhHHH----HHHhcCCCC--ChHHHHHHhhcchhhhhcCchh
Q 009678 130 INDRLQ-WKEHSMIFAMPNKPGEFSRFDFPE-VLPA-PLNGIL----AILRNNEML--TWPEKVKFAIGLLPAIIGGQAY 200 (529)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 200 (529)
+..... +...... ......+...+ .++. ....+. .++...... +..+..+ .............
T Consensus 83 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~ 154 (539)
T PLN02568 83 SLESDEPWECMDGF------PDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDE--VDFVKLAAKAARV 154 (539)
T ss_pred CccccCcceecccc------cccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccccc--ccccccchhccch
Confidence 854321 1110000 00000000000 0110 011111 111110000 0000000 0000000000000
Q ss_pred hhccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHH------------h--------hhccC
Q 009678 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF------------L--------QEKHG 260 (529)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--------~~~~g 260 (529)
.......++.+|+++. +.. +.+....+.....+....+.++....+..+..+ + ....|
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0001124777777752 111 111111111111111111111111111000000 0 00012
Q ss_pred CeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh------h
Q 009678 261 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL------Q 334 (529)
Q Consensus 261 ~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~------l 334 (529)
. ...+.|| .+.|++.|++.+. +.+|+++++|++|...+++ + .|++.+|+++.||+||+|+|...++. +
T Consensus 233 ~-~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i 306 (539)
T PLN02568 233 E-EITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-V-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSG 306 (539)
T ss_pred C-eEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-E-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccc
Confidence 2 2334454 7788888888774 3479999999999985444 3 58888998899999999999999985 2
Q ss_pred CCCchhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCcccccCCcceeeecccc---------cc----cccc--CCCC
Q 009678 335 LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSL---------TC----KEYY--NPNQ 399 (529)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------~~----~~~~--~~~~ 399 (529)
...+..|..+.++++++.+..+.|+++.|+++||....... .-+.+.+..+.+. .+ .... ..+.
T Consensus 307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (539)
T PLN02568 307 LFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVA-KFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNS 385 (539)
T ss_pred eecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccc-cccceeeeecccchhhhcccccchhhccccccccCCCC
Confidence 23334455667889999999999999999999875311110 0011111111000 00 0011 1234
Q ss_pred ceEEEEecC--ccccCCCChHHHHHHHHHHHHHhCCCCccc-------------------cccccEEEEEEEeccCC--c
Q 009678 400 SMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISA-------------------DQSKAKIVKYHVVKTPR--S 456 (529)
Q Consensus 400 ~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~-------------------~~~~~~~~~~~~~~~p~--~ 456 (529)
.++.++... +..+..++++++.+.+++.|.++||..... ......++..+|...|+ |
T Consensus 386 ~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~G 465 (539)
T PLN02568 386 SVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLG 465 (539)
T ss_pred CEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCC
Confidence 455444433 356678899999999999999999853220 01123445566666666 4
Q ss_pred ccccC-CCCCC-CCCCCCCCC-------------CCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009678 457 VYKTI-PNCEP-CRPLQRSPV-------------EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 457 ~~~~~-~~~~~-~~~~~~~~~-------------~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~ 512 (529)
.|.+. |+... ....+..|+ ++|||||++++..|+++|+||++||+++|++|++.++
T Consensus 466 sYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 466 SYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 55554 34322 223344454 3799999999999999999999999999999999875
No 21
>PLN03000 amine oxidase
Probab=100.00 E-value=6.1e-33 Score=287.55 Aligned_cols=419 Identities=19% Similarity=0.221 Sum_probs=248.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCC---CCeeeeeeeeecCCcch-HHHHHHHcCCC
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD---GDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~lg~~ 131 (529)
...+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+....+ ++.+|+|++|+++...+ +..+++++|++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~ 262 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS 262 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence 568999999999999999999999999999999999999999876322 57899999999987765 55678999987
Q ss_pred CcccccccceeeecCCCCCCcccccCCCCCCCc-hhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHH
Q 009678 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAP-LNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (529)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (529)
...... ...++... +.. .+.. ...+...+. ..+ +........... ...+.++.
T Consensus 263 l~~~~~-~~~ly~~~---Gk~--------v~~~~~~~ve~~fn--~lL---d~~~~lr~l~~~---------~~~D~SLg 316 (881)
T PLN03000 263 LYKVRD-KCPLYRVD---GKP--------VDPDVDLKVEVAFN--QLL---DKASKLRQLMGD---------VSMDVSLG 316 (881)
T ss_pred eeecCC-CCeEEEeC---CcC--------CchhhhhhHHHHHH--HHH---HHHHHHHHHhcc---------cCcCCcHH
Confidence 432211 11122111 111 0000 000000000 000 000000000000 01123333
Q ss_pred HHHHH------cCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHH
Q 009678 211 EWMRK------QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 211 ~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
++++. ..+..+. ..++...+..........++..... ..........+.....+.|| ++.|++.|++.+
T Consensus 317 ~aLe~~~~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~-~wdqd~~~e~~G~~~~v~GG-~~~LieaLa~~L-- 391 (881)
T PLN03000 317 AALETFRQVSGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLA-FWDQDDPYDMGGDHCFLPGG-NGRLVQALAENV-- 391 (881)
T ss_pred HHHHHHHHHHcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHH-HhhhcccccCCCceEEeCCC-HHHHHHHHHhhC--
Confidence 32221 0111111 1122222222222222222222111 11110001122233445555 788888888766
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh--hhCCCchhhhHHHHHhhcCCCcCeEEEEEE
Q 009678 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIW 362 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 362 (529)
.|+++++|++|.+.+++. .|++.+ +++.||+||+|+|..+++ .+...+..|..+.+++.++.+..+.||.+.
T Consensus 392 ---~I~Ln~~Vt~I~~~~dgV--~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~ 465 (881)
T PLN03000 392 ---PILYEKTVQTIRYGSNGV--KVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAML 465 (881)
T ss_pred ---CcccCCcEEEEEECCCeE--EEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEE
Confidence 499999999999865553 466654 489999999999999999 343333345667789999999999999999
Q ss_pred ecCCcccccCc-cccc--CCc-ceeeeccccccccccC-CCCceEEEEecC--ccccCCCChHHHHHHHHHHHHHhCCCC
Q 009678 363 FDRKLKNTYDH-LLFS--SSL-LSVYADMSLTCKEYYN-PNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDE 435 (529)
Q Consensus 363 ~~~~~~~~~~~-~~~~--~~~-~~~~~~~s~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~p~~ 435 (529)
|+++||..... .++. ++. ...+.. ...+.+ .+..++.++... +..+..++++++++.++++|.++|+..
T Consensus 466 Fd~~FW~~d~~~FG~l~~~~~~rg~~~~----f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~ 541 (881)
T PLN03000 466 FPYVFWSTDLDTFGHLTEDPNYRGEFFL----FYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQ 541 (881)
T ss_pred eCCccccCCCCceeEEecCCCCCceeEE----EeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCcc
Confidence 99999975311 1111 110 000000 011222 234455444332 256678899999999999999999732
Q ss_pred -cc-ccccccEEEEEEEeccCC--cccccC-CC-CCCCCCCCCCCC--CCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009678 436 -IS-ADQSKAKIVKYHVVKTPR--SVYKTI-PN-CEPCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 507 (529)
Q Consensus 436 -~~-~~~~~~~~~~~~~~~~p~--~~~~~~-~~-~~~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i 507 (529)
.. +++. ..+..+|...|+ |.|.+. ++ .......+..|+ ++|||||++++..|+++|+||++||+++|.+|
T Consensus 542 ~~~vp~Pv--~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eI 619 (881)
T PLN03000 542 GINVPDPL--QTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANM 619 (881)
T ss_pred ccccCCce--EEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHH
Confidence 11 1122 334455655555 455443 34 222334455664 58999999999989999999999999999999
Q ss_pred HHHHhhHHhh
Q 009678 508 VQDYVLLAAR 517 (529)
Q Consensus 508 ~~~l~~~~~~ 517 (529)
++.++..+..
T Consensus 620 l~~l~~~~~~ 629 (881)
T PLN03000 620 AQSAKARGIR 629 (881)
T ss_pred HHHhhhccCC
Confidence 9999886554
No 22
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=8.8e-32 Score=277.53 Aligned_cols=431 Identities=21% Similarity=0.259 Sum_probs=254.0
Q ss_pred EEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCC--Cccccc
Q 009678 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN--DRLQWK 137 (529)
Q Consensus 60 VvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~~~~~ 137 (529)
|||||||++||+||..|++.|++|+|||+++++||++.++. .+|+.+|.|++++... ..+.++++++|++ ..+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 68999999999999999999999999999999999999987 5899999999998632 3467888888853 223333
Q ss_pred ccceeeecCCCCCCcccccCCCCC-----------CCchhHHHHHHhcCCCCChHHHHHHhh-cchh--hhhc--Cchhh
Q 009678 138 EHSMIFAMPNKPGEFSRFDFPEVL-----------PAPLNGILAILRNNEMLTWPEKVKFAI-GLLP--AIIG--GQAYV 201 (529)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~--~~~~~ 201 (529)
+.+..+.+...++.. +.+..+. |.....+..+++............... .... .... .....
T Consensus 79 ~~~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQ--LDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLL 156 (502)
T ss_pred ECCCceEEECCCCCE--EEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhh
Confidence 322221111122211 1111111 111111111111000000000000000 0000 0000 00111
Q ss_pred hccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHH
Q 009678 202 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEH 281 (529)
Q Consensus 202 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~ 281 (529)
......++.+++++. +..+..+.++.. .....+.++.+.+....+... .... +. ..++.|| ...+++.|.+.
T Consensus 157 ~~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~---~~~~-~g-~~~~~gG-~~~l~~al~~~ 228 (502)
T TIGR02734 157 ALLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALISA---LERE-WG-VWFPRGG-TGALVAAMAKL 228 (502)
T ss_pred hccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHHH---HHhh-ce-EEEcCCC-HHHHHHHHHHH
Confidence 223457888888876 444444444431 122344566666554332221 1111 22 3356666 78999999999
Q ss_pred HHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhCCCchhhhHHHHHhhcCCC-cCeEEE
Q 009678 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVG-VPVINI 359 (529)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~v 359 (529)
++++|++|+++++|++|..+ ++.+++|++.+|+++.||+||+|++.. +...|+++...+....+++.+..+ .+.+++
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~ 307 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVL 307 (502)
T ss_pred HHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEE
Confidence 99999999999999999974 556668999999889999999999975 445666654433233344445443 356778
Q ss_pred EEEec---CCccc-ccCccccc-C---------------Ccceeeec-cccccccccCCCCceEE-EEecCc-----ccc
Q 009678 360 HIWFD---RKLKN-TYDHLLFS-S---------------SLLSVYAD-MSLTCKEYYNPNQSMLE-LVFAPA-----EEW 412 (529)
Q Consensus 360 ~l~~~---~~~~~-~~~~~~~~-~---------------~~~~~~~~-~s~~~~~~~~~~~~~l~-~~~~~~-----~~~ 412 (529)
++.++ +++.. ....+.+. + ....++.. .+..++..+|+|.+.+. .+..+. ..|
T Consensus 308 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~ 387 (502)
T TIGR02734 308 YFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDW 387 (502)
T ss_pred EEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCc
Confidence 88887 34321 11111111 0 01122322 24456778888876654 333332 234
Q ss_pred CCCChHHHHHHHHHHHHHh-CCCCccccccccEEEEEEEeccCCcc-----------cccC---CCCCCCCCC-CCCCCC
Q 009678 413 ISCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPRSV-----------YKTI---PNCEPCRPL-QRSPVE 476 (529)
Q Consensus 413 ~~~~~~~~~~~~l~~l~~~-~p~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~---~~~~~~~~~-~~~~~~ 476 (529)
.. .++++.+.+++.|++. +|+... . +......+|.+. |+.. .+...++|. ..++++
T Consensus 388 ~~-~k~~~~~~il~~l~~~~~p~l~~------~-i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~ 459 (502)
T TIGR02734 388 SV-EGPRYRDRILAYLEERAIPGLRD------R-IVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKID 459 (502)
T ss_pred HH-HHHHHHHHHHHHHHHhcCCChhH------h-eEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCC
Confidence 32 3577899999999998 887421 2 333444555532 2111 122234453 357899
Q ss_pred CeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 009678 477 GFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 513 (529)
Q Consensus 477 ~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~~ 513 (529)
|||+||+++.++ +|+.+|+.||+.+|++|+.+++.
T Consensus 460 gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 460 NLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccC
Confidence 999999999986 79999999999999999987543
No 23
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=4e-32 Score=282.18 Aligned_cols=421 Identities=19% Similarity=0.212 Sum_probs=248.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCC-C--CeeeeeeeeecCCcch-HHHHHHHcCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~ 130 (529)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ + ..+|.|++++++...+ +..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 4568999999999999999999999999999999999999998876332 2 2589999999987655 6789999998
Q ss_pred CCcccccccceeeecCCCCCCcccccCCCCCCCchh-HHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccH
Q 009678 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (529)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (529)
+..... ....++. . ++.... ...+.... .+..++.. ..+++.. +. +. ....+.++
T Consensus 316 ~~~~~~-~~~~~~~-~--dG~~~~----~~~~~~v~~~f~~lL~~------~~klr~~--~~-------~~-~~~~D~SL 371 (808)
T PLN02328 316 PLHKVR-DICPLYL-P--DGKAVD----AEIDSKIEASFNKLLDR------VCKLRQA--MI-------EE-VKSVDVNL 371 (808)
T ss_pred ceEecC-CCceEEe-C--CCcCcc----hhhhhhHHHHHHHHHHH------HHHHHHh--hh-------hc-ccccCcCH
Confidence 643221 1111111 1 111100 00111100 01111110 0000000 00 00 01123677
Q ss_pred HHHHHHc----CCC-hHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHH
Q 009678 210 QEWMRKQ----GVP-DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 210 ~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
.++++.+ +.. ......++...+..........++........... ....+.....+.|| +..|++.|++.+
T Consensus 372 g~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~-~~e~~G~~~~v~GG-~~~Li~aLa~~L-- 447 (808)
T PLN02328 372 GTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDD-PYEMGGDHCFIPGG-NDTFVRELAKDL-- 447 (808)
T ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccc-cccCCCeEEEECCc-HHHHHHHHHhhC--
Confidence 7777532 110 11111222322222222222222221111000000 01112234445555 788888888765
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh--hCCCchhhhHHHHHhhcCCCcCeEEEEEE
Q 009678 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIW 362 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 362 (529)
.|+++++|++|...++++ .| +.+|+++.||+||+|+|..+++. +...+..|..+.++++++.+.++.||.+.
T Consensus 448 ---~I~ln~~V~~I~~~~dgV--~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~ 521 (808)
T PLN02328 448 ---PIFYERTVESIRYGVDGV--IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALL 521 (808)
T ss_pred ---CcccCCeeEEEEEcCCeE--EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEE
Confidence 489999999999865554 34 45677899999999999999884 32223345567788999999999999999
Q ss_pred ecCCcccccCc-cccc--CC-cce---eeeccccccccccCCCCceEEEEecC--ccccCCCChHHHHHHHHHHHHHhCC
Q 009678 363 FDRKLKNTYDH-LLFS--SS-LLS---VYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFP 433 (529)
Q Consensus 363 ~~~~~~~~~~~-~~~~--~~-~~~---~~~~~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~p 433 (529)
|+++||..... +.+. +. ..+ .+.+.+ ...+..++..+..+ ...+..++++++++.++++|.++|+
T Consensus 522 F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s------~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifg 595 (808)
T PLN02328 522 FPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYS------SVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFH 595 (808)
T ss_pred eCCccccCCCCceEEEeecCCCCceEEEEecCC------CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 99999974221 1111 11 111 111111 12334455444333 2555678899999999999999997
Q ss_pred CC-c-cccccccEEEEEEEeccCC--cccccC-CCCC-CCCCCCCCCC--CCeEEecccccCCCCCchHHHHHHHHHHHH
Q 009678 434 DE-I-SADQSKAKIVKYHVVKTPR--SVYKTI-PNCE-PCRPLQRSPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQ 505 (529)
Q Consensus 434 ~~-~-~~~~~~~~~~~~~~~~~p~--~~~~~~-~~~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~ 505 (529)
.. . .+++ .....++|...|+ |.|.+. ++.. ...+.+..|+ ++|||||++++..|.|+|+||+.||+++|.
T Consensus 596 p~~~~vp~P--~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~ 673 (808)
T PLN02328 596 PKGIVVPDP--VQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAA 673 (808)
T ss_pred cccccccCc--ceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHH
Confidence 42 1 1111 2334445554444 445443 3321 2233344553 689999999999888999999999999999
Q ss_pred HHHHHHhhHHhh
Q 009678 506 AIVQDYVLLAAR 517 (529)
Q Consensus 506 ~i~~~l~~~~~~ 517 (529)
+|+..++..+..
T Consensus 674 eIl~~~~~~~~~ 685 (808)
T PLN02328 674 NILRVARRRSLC 685 (808)
T ss_pred HHHHHHhhcccC
Confidence 999998876544
No 24
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=4.3e-31 Score=270.91 Aligned_cols=432 Identities=19% Similarity=0.288 Sum_probs=253.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCC----cch-HHHHHHHcCCCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YPN-IQNLFGELGIND 132 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~lg~~~ 132 (529)
+||+|||||++||+||..|+++|++|+|||+++.+||+++++. .+|+.+|.|++++.+. ..+ +.+++..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999986 5899999999987643 222 456666666433
Q ss_pred cccccccceeeecCCCCCCcccccCCCC-----------CCCchhHHHHHHhcCC----------CCChHHHHHHhhcch
Q 009678 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPLNGILAILRNNE----------MLTWPEKVKFAIGLL 191 (529)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 191 (529)
..........+..+ ++.. +.+..+ .|.....+..+++... .+.+.........+.
T Consensus 80 ~~~~~~~~~~~~~~--~g~~--~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 80 ETIPDPVQIHYHLP--NGLN--VKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFF 155 (493)
T ss_pred cccCCCccEEEECC--CCee--EeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHh
Confidence 22111111112111 1110 111111 1222222222211100 000000000000000
Q ss_pred hhhhcCchhhhccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCC
Q 009678 192 PAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (529)
Q Consensus 192 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 271 (529)
.... ....+......++.+++++. +..+....++......+...++.+.+.......+. ....+ ...++.|| .
T Consensus 156 ~~~~-~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~-g~~~~~gG-~ 228 (493)
T TIGR02730 156 KHPL-ACLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYG-GINYPKGG-V 228 (493)
T ss_pred hchh-hhhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccc-eEecCCCh-H
Confidence 0000 00001111236777888776 34444444444333333223334554433322221 11122 33456666 6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhCCCchhhhHHHHHhhc
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEK 350 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~~~~~~~~~~~~~~~~ 350 (529)
..+++.|.+.++++|++|+++++|++|..+ ++.+.+|++.+|++++||+||+|++++ ++..|+++...+......+++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 899999999999999999999999999874 566778999999889999999998775 555687765443333344445
Q ss_pred CCCc-CeEEEEEEecCCccc---ccCccccc------CCcceeeecc-ccccccccCCCCceEEEE-ecCccccCCC---
Q 009678 351 LVGV-PVINIHIWFDRKLKN---TYDHLLFS------SSLLSVYADM-SLTCKEYYNPNQSMLELV-FAPAEEWISC--- 415 (529)
Q Consensus 351 ~~~~-~~~~v~l~~~~~~~~---~~~~~~~~------~~~~~~~~~~-s~~~~~~~~~~~~~l~~~-~~~~~~~~~~--- 415 (529)
+... +.+++++.++.+... ...++.+. .+...++... +..++..+|+|.+++... ..+...|.++
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~ 387 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPK 387 (493)
T ss_pred ccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcH
Confidence 4443 578889999875421 11111111 1111233332 345677888888876532 2233445332
Q ss_pred ----ChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCc----------ccccCCCC---CCCC-CCCCCCCCC
Q 009678 416 ----SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS----------VYKTIPNC---EPCR-PLQRSPVEG 477 (529)
Q Consensus 416 ----~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~---~~~~-~~~~~~~~~ 477 (529)
.++++.+.+++.|++++|+... . +.+....+|.. .|+..+.. ...+ +..+++++|
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l~~------~-I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~g 460 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGLDS------A-IDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPG 460 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhh------c-EEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCC
Confidence 2466889999999999997421 2 23334444443 22221111 1111 345788999
Q ss_pred eEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009678 478 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 511 (529)
Q Consensus 478 l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l 511 (529)
||+||+++.++ +++.+|+.||+.+|++|+.++
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 461 LYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred eEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 99999999986 799999999999999998764
No 25
>PLN02976 amine oxidase
Probab=100.00 E-value=1.4e-31 Score=283.99 Aligned_cols=420 Identities=19% Similarity=0.207 Sum_probs=244.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcc--------h-HHHHH
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLF 125 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~--------~-~~~l~ 125 (529)
...+||+|||||++|+++|+.|.+.|++|+|||+++.+||++.+.....|+.+|.|++++.+... + +..++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 34589999999999999999999999999999999999999988654467889999999886532 2 23467
Q ss_pred HHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCch-hHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhcc
Q 009678 126 GELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQ 204 (529)
Q Consensus 126 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (529)
+++|+.....-.... .+.. ..+ ..++... ..+...+.. .+......... .. ...
T Consensus 771 ~qlGl~l~~~~~~~~-~yd~--~~G--------~~V~~e~~~~v~~~fn~--------lld~~~~~~~~--~g----~~a 825 (1713)
T PLN02976 771 AQLGLELTVLNSDCP-LYDV--VTG--------EKVPADLDEALEAEYNS--------LLDDMVLLVAQ--KG----EHA 825 (1713)
T ss_pred HhcCCccccccCCCc-eeEc--cCC--------cCCCHHHHHHHHHHHHH--------HHHHHHHHHhh--cc----cCc
Confidence 888876532211100 1100 000 0011110 001100000 00000000000 00 000
Q ss_pred CCccHHHHHHHcC------------------------------------C----Ch----HHHHHHHHHHHhhc---CCC
Q 009678 205 DGLTVQEWMRKQG------------------------------------V----PD----RVTTEVFIAMSKAL---NFI 237 (529)
Q Consensus 205 ~~~s~~~~l~~~~------------------------------------~----~~----~~~~~~~~~~~~~~---~~~ 237 (529)
..+++.++|+... . .. .....++...+... .+.
T Consensus 826 ~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa 905 (1713)
T PLN02976 826 MKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAA 905 (1713)
T ss_pred cCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccC
Confidence 1122333222100 0 00 00111111121211 123
Q ss_pred CCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecC---------CCCEEE
Q 009678 238 NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---------DGTVKN 308 (529)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~---------~~~~~~ 308 (529)
++++++...... ...+....|..+ .+.|| +..|++.|++.+ .|++|++|++|.+.. ++.+ .
T Consensus 906 ~L~eVSl~~~~q--d~~y~~fgG~~~-rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-t 975 (1713)
T PLN02976 906 LLKEVSLPYWNQ--DDVYGGFGGAHC-MIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-K 975 (1713)
T ss_pred CHHHhhhhhhhc--ccccccCCCceE-EeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-E
Confidence 344444431110 000111122223 34454 788888887754 599999999999841 2223 6
Q ss_pred EEEcCCcEEecCEEEEccCHHHHh--hhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCccccc-CcccccC---Ccce
Q 009678 309 FLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHLLFSS---SLLS 382 (529)
Q Consensus 309 v~~~~G~~i~ad~VI~a~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~---~~~~ 382 (529)
|+|.+|+++.||+||+|+|..+++ .+...+..|.....++..+.+..+.|+++.|+++||... ..+.... +..+
T Consensus 976 VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG 1055 (1713)
T PLN02976 976 VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRG 1055 (1713)
T ss_pred EEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCc
Confidence 888999899999999999999987 344444455666788999999999999999999999752 1111110 0111
Q ss_pred eeeccccccccccCCCCceEEEEe-cC-ccccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCC--ccc
Q 009678 383 VYADMSLTCKEYYNPNQSMLELVF-AP-AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVY 458 (529)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~--~~~ 458 (529)
.++ ..+....+.+..+|..++ +. +..+..++++++++.+++.|.++||+...+.+ ..+...+|...|+ |.|
T Consensus 1056 ~~~---~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdP--v~~vvTrWssDPySrGSY 1130 (1713)
T PLN02976 1056 QCF---MFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDP--VASVVTDWGRDPFSYGAY 1130 (1713)
T ss_pred eEE---EeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCc--ceeEEecCCCCCCcCccc
Confidence 100 001111123434444433 32 24566788999999999999999996322222 2344556666666 455
Q ss_pred ccC-CCC-CCCCCCCCCCCCC-eEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhhH
Q 009678 459 KTI-PNC-EPCRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 514 (529)
Q Consensus 459 ~~~-~~~-~~~~~~~~~~~~~-l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~~~ 514 (529)
.+. |+. ......+..|++| |||||++++..|+|+|+||++||+++|++|+..|...
T Consensus 1131 Sy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976 1131 SYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred cCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 444 443 2234455678776 9999999999999999999999999999999998653
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-31 Score=251.68 Aligned_cols=425 Identities=21% Similarity=0.258 Sum_probs=245.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCC-CCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcc-hHHHHHHHcC-CC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP-NIQNLFGELG-IN 131 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~-~~~~l~~~lg-~~ 131 (529)
...++|||||||+|||+||.+|.+.| .+|+|||+.+|+|||+.++...+ .++++|++|++|... .+.++.+++| +.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d-~~ielGAqwihG~~gNpVY~la~~~g~~~ 97 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFAD-GVIELGAQWIHGEEGNPVYELAKEYGDLK 97 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCC-CeEeecceeecCCCCChHHHHHHHhCccc
Confidence 45669999999999999999999776 58999999999999999987444 499999999999544 4899999888 21
Q ss_pred CcccccccceeeecCCCCCCcccccCCCCCCCch-hHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHH
Q 009678 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (529)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (529)
.. ......+. ...+........|... ..+..+.... . ....+.....+..|+.
T Consensus 98 ~~---~~tg~~~~-----~~~~~~~~g~~V~~~~~~~~~~~~~~~---------------~---~~~r~~~~~~~~~SvG 151 (498)
T KOG0685|consen 98 LL---EVTGPAYV-----DNFHTRSNGEVVPEELLDELNEITVTL---------------S---DKLREAEIAHDEGSVG 151 (498)
T ss_pred ee---ccCCcccc-----ceeEEEecCccCcHHHHHHHHHHHHhh---------------h---hhcccccccCccccHH
Confidence 11 00000000 0000000001011111 1111111000 0 0000000112335555
Q ss_pred HHHHHc--------CC---ChHHHHHHHHHHHhhcC---CC-CCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccch
Q 009678 211 EWMRKQ--------GV---PDRVTTEVFIAMSKALN---FI-NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC 275 (529)
Q Consensus 211 ~~l~~~--------~~---~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~ 275 (529)
+++... .. ...+....+..+..... +. +.++++.... ..+......-...+...| ...+.
T Consensus 152 ~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~----~ey~~~~ge~~~~~~~kG-y~~iL 226 (498)
T KOG0685|consen 152 EYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRAL----LEYTECPGEELLIWNKKG-YKRIL 226 (498)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhc----cceeecCchhhheechhH-HHHHH
Confidence 555531 00 11222223332222221 11 2223332211 111110000011111111 34444
Q ss_pred HHHHHHHHHc----C--cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh---CCCchhhhHHHH
Q 009678 276 LPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYFK 346 (529)
Q Consensus 276 ~~l~~~l~~~----G--~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l---~~~~~~~~~~~~ 346 (529)
+.|.+.+.+. | .+++++++|.+|...+.+.+ .|++.||+.+.||+||++++..+++.- +..+..|..+..
T Consensus 227 ~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~ 305 (498)
T KOG0685|consen 227 KLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQR 305 (498)
T ss_pred HHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHH
Confidence 4444433322 2 35667799999998655665 699999999999999999999988883 233345678889
Q ss_pred HhhcCCCcCeEEEEEEecCCcccc-cCccccc--CCc-------c-eeeeccccccccccCCCCceEE-EEecCc-cccC
Q 009678 347 RLEKLVGVPVINIHIWFDRKLKNT-YDHLLFS--SSL-------L-SVYADMSLTCKEYYNPNQSMLE-LVFAPA-EEWI 413 (529)
Q Consensus 347 ~~~~~~~~~~~~v~l~~~~~~~~~-~~~~~~~--~~~-------~-~~~~~~s~~~~~~~~~~~~~l~-~~~~~~-~~~~ 413 (529)
+|+++..+++.|+++-|.++||+. ...+.+- +.. . .++.+.....+-.+.+ .+|. ++-+.. ....
T Consensus 306 AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~--~vL~gWiaG~~~~~me 383 (498)
T KOG0685|consen 306 AIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP--NVLLGWIAGREARHME 383 (498)
T ss_pred HHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch--hhhheeccCCcceehh
Confidence 999999999999999999999975 2222111 100 0 0000000000011111 3333 333332 3345
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCC--cccccCCC-CCC--------CCC-CCCCCCCCeEEe
Q 009678 414 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKTIPN-CEP--------CRP-LQRSPVEGFYLA 481 (529)
Q Consensus 414 ~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~-~~~--------~~~-~~~~~~~~l~~a 481 (529)
++++|++.+.+...|++++++..-+ ...++++..|...|. |.|.|.+. ... ..| ....+-+.|.||
T Consensus 384 ~lsdEev~e~~~~~lr~fl~n~~iP--~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FA 461 (498)
T KOG0685|consen 384 TLSDEEVLEGLTKLLRKFLKNPEIP--KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFA 461 (498)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCC--CchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEc
Confidence 8899999999999999999863222 235677888888877 66766542 111 111 122244689999
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHHHHhhHHh
Q 009678 482 GDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 516 (529)
Q Consensus 482 G~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~~~~~ 516 (529)
|++++..++.++.||+.||+|.|+++++.+.....
T Consensus 462 GEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~~ 496 (498)
T KOG0685|consen 462 GEATHRTFYSTTHGAVLSGWREADRLLEHYESSTS 496 (498)
T ss_pred cccccccceehhhhhHHhhHHHHHHHHHHHHhhcc
Confidence 99999999899999999999999999998877654
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.98 E-value=2.2e-32 Score=279.48 Aligned_cols=428 Identities=29% Similarity=0.389 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCC-CCeeeeeeeeecCCcchHHHHHHHcCCCCcccccccceeeec
Q 009678 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAM 145 (529)
Q Consensus 67 iaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~ 145 (529)
||||+||++|+++|++|+|||+++++||++.++.... |+.+|.|++++.+.+.++..++.++++.....+.........
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 6999999999999999999999999999999988553 899999999999888889999999997543332221111100
Q ss_pred CCCCCCcccccCCCCCCCchhHH---HHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHcCCChHH
Q 009678 146 PNKPGEFSRFDFPEVLPAPLNGI---LAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRV 222 (529)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 222 (529)
................+.....+ ........ .+..................+........++.+++.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFR--LLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhhhhcccccc--ccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 00000000000000000000000 00000000 00000000000000000000111111123344444332222222
Q ss_pred HHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh-----hccCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeE
Q 009678 223 TTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQK 297 (529)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~ 297 (529)
....+...............+.......+..... ......+.... +.+...+...+...|++|+++++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~g~~i~l~~~V~~ 234 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGM----GGLSLALALAAEELGGEIRLNTPVTR 234 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEET----TTTHHHHHHHHHHHGGGEESSEEEEE
T ss_pred HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecc----cchhHHHHHHHhhcCceeecCCccee
Confidence 2111222222221122222222211111111100 11111122222 23344445555556789999999999
Q ss_pred EEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh--hCCCchhhhHHHHHhhcCCCcCeEEEEEEecCCccccc-C--
Q 009678 298 IELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D-- 372 (529)
Q Consensus 298 I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~-- 372 (529)
|+.++ +.+ .|++.+|+++.||+||+|+|...+.. +.+.. +.....+++++.+.+..++++.|++++|... .
T Consensus 235 I~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 310 (450)
T PF01593_consen 235 IERED-GGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFF 310 (450)
T ss_dssp EEEES-SEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTES
T ss_pred ccccc-ccc-ccccccceEEecceeeecCchhhhhhhhhcccc--cccccccccccccCcceeEEEeeeccccccccccc
Confidence 99864 444 58899998999999999999999995 44433 3444577788888999999999999998763 1
Q ss_pred cccccCC--cceeeeccccccccccCCCCceEEEEecCc-cccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEE
Q 009678 373 HLLFSSS--LLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYH 449 (529)
Q Consensus 373 ~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~ 449 (529)
+..+.+. ....+.+.+. .+.. +++..++..+..+. ..|...+++++.+.++++|.+++|....+++. .+...+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~ 386 (450)
T PF01593_consen 311 GILYSDGFSPIGYVSDPSK-FPGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPI--DITVTR 386 (450)
T ss_dssp EEEEESSTSSEEEEEEECC-TTSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEES--EEEEEE
T ss_pred ceecccCcccccccccccc-Cccc-ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccccc--cccccc
Confidence 2222222 1122221111 1111 22333334444433 56778899999999999999999952211111 223333
Q ss_pred Ee--ccCCcccccCCCCCC--CCCCCCCCC-CCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009678 450 VV--KTPRSVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 508 (529)
Q Consensus 450 ~~--~~p~~~~~~~~~~~~--~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~ 508 (529)
|. .++.+.+.+.+.... .++.+.+|+ +|||||||++++++.++++||+.||++||++|+
T Consensus 387 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 387 WSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp CTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 33 334454544433222 455567787 699999999999877899999999999999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=2.9e-27 Score=219.66 Aligned_cols=425 Identities=20% Similarity=0.248 Sum_probs=272.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCC--eEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcc---hHHHHHHHc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGEL 128 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~--V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~l 128 (529)
....++|+|||||++||++||+|++++.+ |+|+|+.+|+||.+++....+|+++|.|++.+.+..+ ...+++.++
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL 87 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL 87 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence 34678999999999999999999999664 5779999999999999555789999999999987666 588999999
Q ss_pred CCCCcccccccceeeecCCCCCCcccccC-CCCCCCchhHHHHHHhcCCCCChHHHH--HHhhcchhhhhcCchhhhccC
Q 009678 129 GINDRLQWKEHSMIFAMPNKPGEFSRFDF-PEVLPAPLNGILAILRNNEMLTWPEKV--KFAIGLLPAIIGGQAYVEAQD 205 (529)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 205 (529)
|++++.+..+... +....++-+ .+.++..-..+...+.. ...++...+ .++...... .--....
T Consensus 88 Gl~~e~~~i~~~~-------paaknr~l~~~~~L~~vP~sl~~s~~~-~l~p~~k~L~~a~l~e~fr~-----~~~~~~~ 154 (491)
T KOG1276|consen 88 GLEDELQPIDISH-------PAAKNRFLYVPGKLPTVPSSLVGSLKF-SLQPFGKPLLEAFLRELFRK-----KVSDPSA 154 (491)
T ss_pred CccceeeecCCCC-------hhhhheeeccCcccccCCccccccccc-ccCcccchhHHHHHhhhccc-----cCCCCCc
Confidence 9987654332211 111111111 11111111111110000 000000000 000011100 0012345
Q ss_pred CccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCe-----------------------
Q 009678 206 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSK----------------------- 262 (529)
Q Consensus 206 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------------------- 262 (529)
++++.+|++++ +..++.+..+++++..++..|+++++.+..+..+.. .+..+|+.
T Consensus 155 dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~-~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~ 232 (491)
T KOG1276|consen 155 DESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWK-VEQKHGSIILGTIRAKFARKRTKKAETALSA 232 (491)
T ss_pred cccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHH-HHHhccchhHHHHHHHHHhhcCCCccchhhh
Confidence 68999999987 789999999999999999999999999877654432 11122220
Q ss_pred -------ee-eecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCC-CCEEEEEEcCCcE-EecCEEEEccCHHHHh
Q 009678 263 -------MA-FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD-GTVKNFLLTNGNV-IDGDAYVFATPVDILK 332 (529)
Q Consensus 263 -------~~-~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~-~~~~~v~~~~G~~-i~ad~VI~a~~~~~~~ 332 (529)
.. -..|| .+.+.+.+.+.|.+..+.|.+.-++..+..... ++...+++.++++ +..+++..+.++..+.
T Consensus 233 ~~~~e~~~~~sl~gG-le~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a 311 (491)
T KOG1276|consen 233 QAKKEKWTMFSLKGG-LETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLA 311 (491)
T ss_pred hhcccccchhhhhhh-HhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhh
Confidence 00 11233 678899999999888899999999999886543 4544566666643 4466666799999999
Q ss_pred hhCCCchhhhHHHHHhhcCCCcCeEEEEEEecCC-cccccCc---cccc-----CCcceeeeccccccccccCCCCceEE
Q 009678 333 LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK-LKNTYDH---LLFS-----SSLLSVYADMSLTCKEYYNPNQSMLE 403 (529)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~-~~~~~~~---~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~l~ 403 (529)
.+++.... ....++.++.+.++..|++.|.++ ...+..+ ++-+ .+.+++.+| |...+...+.+.. +.
T Consensus 312 ~ll~~~~~--sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifd-S~~Fp~~~~s~~v-tv 387 (491)
T KOG1276|consen 312 KLLRGLQN--SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFD-SMLFPDRSPSPKV-TV 387 (491)
T ss_pred hhccccch--hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEee-cccCCCCCCCceE-EE
Confidence 99987643 344778899999999999999875 3333333 2221 123455554 2223333333322 22
Q ss_pred EEecCc-ccc--CCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCC----C-CCC
Q 009678 404 LVFAPA-EEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQ----R-SPV 475 (529)
Q Consensus 404 ~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~-~~~ 475 (529)
+.++.. ..| ...+.|++++.+.++|.++++....+ .......|+.++++|..+.....+.. . .+-
T Consensus 388 m~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P-------~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g 460 (491)
T KOG1276|consen 388 MMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKP-------VSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPG 460 (491)
T ss_pred EecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCc-------ccccceehhhcccceecchHHHHHHHHHHHHhCCC
Confidence 222221 223 24578999999999999999764332 12222367777777777644332221 1 123
Q ss_pred CCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009678 476 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 508 (529)
Q Consensus 476 ~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~ 508 (529)
.+|+++|.+..+ -++..+|+||.++|.+++
T Consensus 461 ~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 461 LGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 589999999886 589999999999998875
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.4e-26 Score=235.27 Aligned_cols=425 Identities=22% Similarity=0.270 Sum_probs=227.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcC-CCCc-
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-~~~~- 133 (529)
+.+||||||||+.||+||..|+++|++|+||||++++||+++++.. .||.+|.|++++..... ..++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~-~Gf~fd~G~~~~~~~~~--~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL-DGFRFDTGPSWYLMPDP--GPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec-cceEeccCcceeecCch--HHHHHHhccCcccc
Confidence 4689999999999999999999999999999999999999999874 59999999988763333 36666777 5442
Q ss_pred ccccccceeeecCCCCCCcccc-c--------CCCCCCCchhHHHHHHhcCCCCChHHHHHHhhc-chhhhhc-----Cc
Q 009678 134 LQWKEHSMIFAMPNKPGEFSRF-D--------FPEVLPAPLNGILAILRNNEMLTWPEKVKFAIG-LLPAIIG-----GQ 198 (529)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~ 198 (529)
+.+...+..+.....++..... . +....|.....+..++.. ..+..+.... ....... ..
T Consensus 79 l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRL-----LARLYELLAALLLAPPRSELLLVPD 153 (487)
T ss_pred eeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHH-----HHHhhHHHHhhcCCCchhhhhhccc
Confidence 3333322222222222111100 0 000011111111111110 0000000000 0000000 00
Q ss_pred ---h--hhhccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCcc
Q 009678 199 ---A--YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPER 273 (529)
Q Consensus 199 ---~--~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 273 (529)
. ........++.+++... +..+..+..+........ ..+.+.+. ...+.... .....+.++.|| ++.
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a---~~~~~~~~--~~~~G~~~p~GG-~~a 225 (487)
T COG1233 154 TPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA---LYLLLSHL--GLSGGVFYPRGG-MGA 225 (487)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH---HHHHHHHh--cccCCeeeeeCC-HHH
Confidence 0 00112234555666555 444444444333222222 44444441 11111222 233346677777 899
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCC
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVG 353 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (529)
++++|++.++++|++|+++++|++|..+ +++.+++++.+|+.+++|.||.+........+.++.... ...... .+.
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~~-~~~~~~--~~~ 301 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARRP-RYRGSY--LKS 301 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhhhhhhh-ccccch--hhh
Confidence 9999999999999999999999999984 555557888888779999999998875555555433210 000000 000
Q ss_pred cCeEEEEEEecC--------------CcccccCcc---cccCCcceeee-ccccccccccCCCCc--eEEEEecCccccC
Q 009678 354 VPVINIHIWFDR--------------KLKNTYDHL---LFSSSLLSVYA-DMSLTCKEYYNPNQS--MLELVFAPAEEWI 413 (529)
Q Consensus 354 ~~~~~v~l~~~~--------------~~~~~~~~~---~~~~~~~~~~~-~~s~~~~~~~~~~~~--~l~~~~~~~~~~~ 413 (529)
...+..++.++. +++..+... ....+. .++. ..+..++..+|+|.+ +......+...+.
T Consensus 302 ~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~ 380 (487)
T COG1233 302 LSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPP-PLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDY 380 (487)
T ss_pred hHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCC-ceEEeCCCCCCCccCCCCCcceeeeeeecCcCCCh
Confidence 111112222222 221111100 000000 2333 344577889999975 2222222311221
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccc--------------cCCCCCCCCCCC-CCCCCCe
Q 009678 414 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYK--------------TIPNCEPCRPLQ-RSPVEGF 478 (529)
Q Consensus 414 ~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~--------------~~~~~~~~~~~~-~~~~~~l 478 (529)
+..++++.+. +..+.+++|+... .+ ......+|...-. ...+....+|.. .+|++||
T Consensus 381 ~~~~~~~~~~-~~~~~~~~p~~~~------~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~L 452 (487)
T COG1233 381 DELKESLADA-IDALEELAPGLRD------RI-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGL 452 (487)
T ss_pred HHHHHHHHHH-HHHHhhcCCCccc------ce-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCce
Confidence 2234455555 5678888887422 22 3333334442211 011223344444 4789999
Q ss_pred EEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009678 479 YLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 511 (529)
Q Consensus 479 ~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l 511 (529)
|++|++++++ +++.++..++..++..+..+.
T Consensus 453 Yl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 453 YLVGASTHPG--GGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred EEeCCcCCCC--CCcchhhhhHHHHHhhhcccc
Confidence 9999999998 899999888887777665543
No 30
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=202.70 Aligned_cols=283 Identities=21% Similarity=0.296 Sum_probs=195.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeec---cCCCCeeeeeeeeecC-CcchHHHHHHHcCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGI 130 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg~ 130 (529)
.+..+|+|||+|++||+||+.|+++ ++|+|+|+.+++||++.+.. +..|..+|+|.+++.+ .|+++..+++++|.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv 84 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGV 84 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCC
Confidence 3677999999999999999999987 89999999999999999974 4567799999999886 89999999999998
Q ss_pred CCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhc--CchhhhccCCcc
Q 009678 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG--GQAYVEAQDGLT 208 (529)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s 208 (529)
+.. ...+.+.+..+.+.+ ++.... .+..++.....+.-+....++.+++.+... ...........+
T Consensus 85 ~t~----as~Msf~v~~d~ggl---Ey~g~t-----gl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~t 152 (447)
T COG2907 85 DTK----ASFMSFSVSLDMGGL---EYSGLT-----GLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTT 152 (447)
T ss_pred CCc----ccceeEEEEecCCce---eeccCC-----CccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCcc
Confidence 864 233444443333322 111100 011111111112122333333333333321 111223345689
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccC-------CeeeeecCCCCccchHHHHHH
Q 009678 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG-------SKMAFLDGNPPERLCLPIVEH 281 (529)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~g~~~~~l~~~l~~~ 281 (529)
+.+||++++++..+.+.++.++...+|..+..+++.......+ .++. .+| ..|..+.|| ..+.++.|...
T Consensus 153 l~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~laa~ 229 (447)
T COG2907 153 LAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLAAD 229 (447)
T ss_pred HHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHh-ccCceecCCCCceeEcccc-hHHHHHHHhcc
Confidence 9999999999999999999999999998888887765544333 2222 233 345666665 45566666554
Q ss_pred HHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhcCCCcCeEEEE
Q 009678 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIH 360 (529)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 360 (529)
+ +.+|.++++|..|.+-.+|++ |+..+|++-++|.||+||.++....++++.. ....+.+..+.|.....|.
T Consensus 230 ~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~s--p~e~qll~a~~Ys~n~aVl 301 (447)
T COG2907 230 I---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEPS--PEERQLLGALRYSANTAVL 301 (447)
T ss_pred c---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCCC--HHHHHHHHhhhhhhceeEE
Confidence 4 457999999999998888864 6667899999999999999998888888763 3344567777776655543
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=195.50 Aligned_cols=323 Identities=20% Similarity=0.241 Sum_probs=204.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCc-ccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR-LQW 136 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~-~~~ 136 (529)
.+|+|||+||+||+||+.|+..|++|+|+||..-+|||+.+.+ ..+..+|.|+.++......+.++++.+.-+.- ..|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3799999999999999999999999999999999999999854 45667999999998766666666665532110 000
Q ss_pred cccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHHc
Q 009678 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (529)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (529)
.+ . .+.+.+ -
T Consensus 81 ~~-----------~---~~~~~~--------------------------------------------------------~ 90 (331)
T COG3380 81 TP-----------A---VWTFTG--------------------------------------------------------D 90 (331)
T ss_pred cc-----------c---cccccc--------------------------------------------------------C
Confidence 00 0 000000 0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceee
Q 009678 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQ 296 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~ 296 (529)
+.+ ...++.+ |+...++..|.+.|+. ..+|+++++|+
T Consensus 91 ~~~-----------------~~~d~~p---------------------yvg~pgmsalak~LAt-----dL~V~~~~rVt 127 (331)
T COG3380 91 GSP-----------------PRGDEDP---------------------YVGEPGMSALAKFLAT-----DLTVVLETRVT 127 (331)
T ss_pred CCC-----------------CCCCCCc---------------------cccCcchHHHHHHHhc-----cchhhhhhhhh
Confidence 000 0001100 1111113444443333 35899999999
Q ss_pred EEEecCCCCEEEEEEcCCc-EEecCEEEEccCHHHHhhhCCC--chhhhHHHHHhhcCCCcCeEEEEEEecCCcccccCc
Q 009678 297 KIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (529)
Q Consensus 297 ~I~~~~~~~~~~v~~~~G~-~i~ad~VI~a~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 373 (529)
+|...++.+ .+++++|. ...+|.||+|+|+..+..|+.. ...+..++..+..+.|.|...+.+.|..+...+..+
T Consensus 128 ~v~~~~~~W--~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G 205 (331)
T COG3380 128 EVARTDNDW--TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG 205 (331)
T ss_pred hheecCCee--EEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC
Confidence 999875555 68886663 5679999999999887777643 344566778888888888888888888776555555
Q ss_pred cccc-CCcceeeeccccccccccCCCCceEEEEecC--ccccCCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEE
Q 009678 374 LLFS-SSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHV 450 (529)
Q Consensus 374 ~~~~-~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~ 450 (529)
+... .++-++..+.+ .+...|.+..++ +--++ ...+.+.++|..++.+.....++++...+. +.....
T Consensus 206 ~~vdg~~laWla~d~s--K~g~~p~~~~~v-vqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~------p~~s~~ 276 (331)
T COG3380 206 NFVDGHPLAWLARDAS--KKGHVPDGEIWV-VQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPE------PDWSDA 276 (331)
T ss_pred cccCCCeeeeeecccc--CCCCCCcCceEE-EEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCc------chHHHh
Confidence 3333 44444433323 333444454322 11122 133346677777777777777777743221 223344
Q ss_pred eccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 009678 451 VKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 511 (529)
Q Consensus 451 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l 511 (529)
.+|++..+....+..... ..+-.+||+||||.++ +-+|||++||..+|+.|++.|
T Consensus 277 H~WrYA~P~~~~~~~~L~---ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 277 HRWRYAIPNDAVAGPPLD---ADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hccccccccccccCCccc---cCCCCceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 556665554333221111 1233579999999987 689999999999999999864
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.93 E-value=3.3e-23 Score=193.55 Aligned_cols=241 Identities=22% Similarity=0.292 Sum_probs=159.1
Q ss_pred cCCeeeeecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEcc-CHHHHhhhCCC
Q 009678 259 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT-PVDILKLQLPE 337 (529)
Q Consensus 259 ~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~-~~~~~~~l~~~ 337 (529)
+...|.|+.|| +..+..++++.++++|.+|+++..|.+|..+ +|++++|...+|++++++.||..+ +..++.+|+|.
T Consensus 252 ~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 252 HKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred cCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCC
Confidence 44568889988 8999999999999999999999999999984 589999999999999999999755 55677799998
Q ss_pred chhhhHHHHHhhcCCCc-CeE----EEEEEecCCcccccC----------------ccccc-------CCcceeeec-cc
Q 009678 338 NWKEMAYFKRLEKLVGV-PVI----NIHIWFDRKLKNTYD----------------HLLFS-------SSLLSVYAD-MS 388 (529)
Q Consensus 338 ~~~~~~~~~~~~~~~~~-~~~----~v~l~~~~~~~~~~~----------------~~~~~-------~~~~~~~~~-~s 388 (529)
...|.++ .++++.+. ++. ..++.....--.+.. +..+. ++...++.. .|
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 8777664 33333222 111 122222111100000 00111 111122222 34
Q ss_pred cccccccCCCCceEEEEec-CccccCCCC-------hHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCC-----
Q 009678 389 LTCKEYYNPNQSMLELVFA-PAEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR----- 455 (529)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-------~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~----- 455 (529)
..++...|++++++..+.. ...+|.... ++++++.+++.+++++|+... .++... .-+|.
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss------sv~~~d-vgTP~t~qr~ 480 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS------SVESYD-VGTPPTHQRF 480 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc------eEEEEe-cCCCchhhHH
Confidence 5678888999998875432 225665443 588899999999999998532 333333 33333
Q ss_pred -----ccccc----CCCCCCCCCCC-----CCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhhH
Q 009678 456 -----SVYKT----IPNCEPCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 514 (529)
Q Consensus 456 -----~~~~~----~~~~~~~~~~~-----~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~~~ 514 (529)
|.+.. .+...-.+|.. ++|++|||+||+.+.++ ++|.+|. |..+|...+.+.+..
T Consensus 481 l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~ 549 (561)
T KOG4254|consen 481 LGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLY 549 (561)
T ss_pred hcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhH
Confidence 22211 11111223444 78999999999999998 7888775 999999887776553
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.88 E-value=7.9e-20 Score=182.52 Aligned_cols=429 Identities=17% Similarity=0.216 Sum_probs=229.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC----CCCeEEEeccccCCceeEeecc-CCCCeeeeeeeeecCCcchHHHHHHHc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGEL 128 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~~~GG~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 128 (529)
.....+|+|||||++||+||++|.++ |++|+|||+++.+||++.++.. .+|+.++.|.. +...+..+.++++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i 97 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI 97 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence 34568999999999999999999996 6899999999999999987542 45787776654 566777888898887
Q ss_pred CCCCcccccccceeeecCCCCCCc--ccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCC
Q 009678 129 GINDRLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 206 (529)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (529)
.-.........+.+.......... .++.+..+.. + ....+.+..+.+.. ++..... ....++.
T Consensus 98 psle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~---------~-d~~~~~L~~k~r~~--Ll~l~l~---~e~~Ld~ 162 (576)
T PRK13977 98 PSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI---------L-DTDKFGLSKKDRKE--LLKLLLT---PEEKLDD 162 (576)
T ss_pred cccCCCCcccccceeeeecCCcccceeeEEcCCCCE---------E-ECcCCCCCHHHHHH--HHHHhcc---CHHHhCC
Confidence 432211111111111111111110 0111000000 0 01122222222211 1111111 1345677
Q ss_pred ccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhcc----CCeeeeecCCCCccchHHHHHHH
Q 009678 207 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKH----GSKMAFLDGNPPERLCLPIVEHI 282 (529)
Q Consensus 207 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~g~~~~~l~~~l~~~l 282 (529)
.++.+|+....+.. .|..+...++.+. ...|+..+..++..|+.... .+...+..++..+.++..|.+.|
T Consensus 163 ~tI~d~f~~~Ff~t-----~Fw~~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~L 236 (576)
T PRK13977 163 KTIEDWFSPEFFET-----NFWYYWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYL 236 (576)
T ss_pred cCHHHHHhhcCchh-----HHHHHHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHH
Confidence 99999999864433 3344444444444 56677777777766644332 23445556666789999999999
Q ss_pred HHcCcEEEecceeeEEEec-CC--CCEEEEEEc-CCc-----EEecCEEEEccCHHHHhhhCCCchhhh----------H
Q 009678 283 QSLGGEVRLNSRVQKIELN-DD--GTVKNFLLT-NGN-----VIDGDAYVFATPVDILKLQLPENWKEM----------A 343 (529)
Q Consensus 283 ~~~G~~i~~~t~V~~I~~~-~~--~~~~~v~~~-~G~-----~i~ad~VI~a~~~~~~~~l~~~~~~~~----------~ 343 (529)
+++||+|+++++|++|..+ ++ ++|++|... +|+ ...+|.||+|+|..+-..-+++...|+ .
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~ 316 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRELGGSWT 316 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCCCccHH
Confidence 9999999999999999974 23 667788764 332 246899999998765444332221111 1
Q ss_pred HHHHhhcC--------------CCcCeEEEEEEecC-Cccc---------ccCc------cc-cc--CCcceeeeccccc
Q 009678 344 YFKRLEKL--------------VGVPVINIHIWFDR-KLKN---------TYDH------LL-FS--SSLLSVYADMSLT 390 (529)
Q Consensus 344 ~~~~~~~~--------------~~~~~~~v~l~~~~-~~~~---------~~~~------~~-~~--~~~~~~~~~~s~~ 390 (529)
.++.+.+- .........+.++. .+.+ +..+ ++ +. ++.+++.....+.
T Consensus 317 LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~dS~W~~s~~v~~QP~ 396 (576)
T PRK13977 317 LWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFKDSNWLMSITVNRQPH 396 (576)
T ss_pred HHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEecCCeeEEEEecCCCC
Confidence 22222211 11112223333332 2211 1111 00 00 1111221111111
Q ss_pred cccccCCCCceEEEEecCc----ccc-----CCCChHHHHHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccC
Q 009678 391 CKEYYNPNQSMLELVFAPA----EEW-----ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTI 461 (529)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~----~~~-----~~~~~~~~~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 461 (529)
.+. +|....+.+.++-. .++ .+++-+||.++++-+|. +|....++ ............-|+......
T Consensus 397 F~~--Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~--~~~~~~~~-i~~~~~~~ip~~MP~ita~f~ 471 (576)
T PRK13977 397 FKN--QPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLG--VPEDKIEE-LAADSANTIPVMMPYITSQFM 471 (576)
T ss_pred CCC--CCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcC--CchhhHHH-HHhhcCceEeeccchhhhhhC
Confidence 111 23333333333311 222 25677999999888873 22100000 000111122333455444444
Q ss_pred CCCCCCCCCCCC-CCCCeEEecccccCCC--CCchHHHHHHHHHHHHHHHH
Q 009678 462 PNCEPCRPLQRS-PVEGFYLAGDYTKQKY--LASMEGAVLSGKLCAQAIVQ 509 (529)
Q Consensus 462 ~~~~~~~~~~~~-~~~~l~~aG~~~~~~~--~~~~~gA~~Sg~~aA~~i~~ 509 (529)
|....-||.... ...||-|.|..+-... .-.+|-++.+|+.|+-.+++
T Consensus 472 pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 472 PRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred CCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 443333444332 2569999999885432 13899999999999998875
No 34
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.81 E-value=6.5e-19 Score=179.24 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=49.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (529)
|.+++..|++.+++.|++|+.+++|++|+. ++. +.|+|++| +++||+||+|+|++..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEccccccc
Confidence 789999999999999999999999999985 332 35888888 7999999999998853
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.77 E-value=6.1e-17 Score=160.86 Aligned_cols=259 Identities=14% Similarity=0.177 Sum_probs=157.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeecc-------------------CCCCeeeeeeeeec
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------------GDGDWYETGLHIFF 115 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~-------------------~~g~~~d~G~~~~~ 115 (529)
++.+||+|||+|++|+.+|..|++.|++|+++|+++..||+.++.+. ...+.+|+.++++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 35799999999999999999999999999999999999999998631 02233555565554
Q ss_pred CCcchHHHHHHHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcc--hhh
Q 009678 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPA 193 (529)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 193 (529)
.. ..+..++.+.++...+.+...+..+... .++.+.. .|.. ..+.+. ...+.+.++.+..+-+ +..
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~s---~~~~~~-s~ll~l~eKr~l~kfl~~v~~ 149 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPAT---DMEALS-SPLMGFFEKNRCKNFLQYVSN 149 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCCC---HHHHhh-CCCcchhhHHHHHHHHHHHHh
Confidence 33 3456777888887776665554433321 1122111 1211 111222 2333444443332211 111
Q ss_pred hhcCch-hhh--ccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hccC-Ceeeeec
Q 009678 194 IIGGQA-YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFLD 267 (529)
Q Consensus 194 ~~~~~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~ 267 (529)
.....+ ... ..+..++.+|+++++++....+ ++...+.........+.+....+..+..+.. ..+| ..+.++.
T Consensus 150 ~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~ 228 (443)
T PTZ00363 150 YDENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPL 228 (443)
T ss_pred hccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeC
Confidence 111110 111 1346899999999988876544 2222222211111111222233332322222 2222 2345666
Q ss_pred CCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccC
Q 009678 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 327 (529)
Q Consensus 268 g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~ 327 (529)
+| ++.++++|++.+...|++++++++|++|..++++++++|++.+|++++|+.||....
T Consensus 229 gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 229 YG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 66 789999999999999999999999999998666777789999999999999998543
No 36
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.76 E-value=2.7e-17 Score=165.53 Aligned_cols=201 Identities=13% Similarity=0.154 Sum_probs=111.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh--hhCCCchhhhHHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRL 348 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~--~l~~~~~~~~~~~~~~ 348 (529)
+..++..|++.+.++|++++.+++|++|+..+++.++.|+|.+| ++.|++||+|++.+... .++...
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~---------- 250 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR---------- 250 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC----------
Confidence 56777888999999999999999999998644566667888888 79999999999887532 221111
Q ss_pred hcCCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccccCCCCceEEEEecCccccCCCChHHHHHHHHHHH
Q 009678 349 EKLVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKEL 428 (529)
Q Consensus 349 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 428 (529)
+...+. +..+.+..+.......+ +.......|.. + .+++..++..............+.+..+.+++.+
T Consensus 251 --~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~y~~-----p--~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (407)
T TIGR01373 251 --LPIESH-PLQALVSEPLKPIIDTV-VMSNAVHFYVS-----Q--SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAI 319 (407)
T ss_pred --CCcCcc-cceEEEecCCCCCcCCe-EEeCCCceEEE-----E--cCCceEEEecCCCCCCccCcCCCHHHHHHHHHHH
Confidence 000011 11111112211100000 00000001110 0 1123222221111111222223566788899999
Q ss_pred HHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHH
Q 009678 429 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 508 (529)
Q Consensus 429 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~ 508 (529)
.++||..... . +... +.|.+..+++..+..-. .|.+|+|++..+.++ ++-.|...|+..|+.|.
T Consensus 320 ~~~~P~l~~~-----~-~~~~----w~G~~~~t~D~~PiIg~--~~~~gl~~a~G~~g~----G~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 320 LEMFPILSRV-----R-MLRS----WGGIVDVTPDGSPIIGK--TPLPNLYLNCGWGTG----GFKATPASGTVFAHTLA 383 (407)
T ss_pred HHhCCCcCCC-----C-eEEE----eccccccCCCCCceeCC--CCCCCeEEEeccCCc----chhhchHHHHHHHHHHh
Confidence 9999974211 1 1122 24555556654443322 235899999876554 57778889999999887
Q ss_pred H
Q 009678 509 Q 509 (529)
Q Consensus 509 ~ 509 (529)
.
T Consensus 384 ~ 384 (407)
T TIGR01373 384 R 384 (407)
T ss_pred C
Confidence 4
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.74 E-value=1.6e-16 Score=160.53 Aligned_cols=202 Identities=15% Similarity=0.091 Sum_probs=109.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhc
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 350 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (529)
+..++..|.+.++++|++|+++++|++|+.+ ++.++.|+|.+| ++.||+||+|+|++....+ +..... ..
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~-~~~g~~----~p--- 269 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYSTALL-KPLGVD----IP--- 269 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchHHHH-HHhCCC----cc---
Confidence 6788899999999999999999999999874 444556777766 7999999999999763221 110000 00
Q ss_pred CCCcCeEEEEEEecCCcccccCcccccCCcceeeecccccccccc-CCCCceEEEEecCccccCCCChHHHHHHHHHHHH
Q 009678 351 LVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYY-NPNQSMLELVFAPAEEWISCSDSEIIDATMKELA 429 (529)
Q Consensus 351 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 429 (529)
+.......+.+..+.+... |.... .+... ..... .++..++..... ...+....+++..+.+.+.+.
T Consensus 270 i~p~rg~~~~~~~~~~~~~---------p~~~~-~~~~~-~~~~~~~~~~~~iG~~~~-~~~~~~~~~~~~~~~l~~~~~ 337 (416)
T PRK00711 270 VYPLKGYSLTVPITDEDRA---------PVSTV-LDETY-KIAITRFDDRIRVGGMAE-IVGFDLRLDPARRETLEMVVR 337 (416)
T ss_pred cCCccceEEEEecCCCCCC---------CceeE-Eeccc-CEEEeecCCceEEEEEEE-ecCCCCCCCHHHHHHHHHHHH
Confidence 0001111122211111100 00000 00000 00011 123222222211 112222334567788888899
Q ss_pred HhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHH
Q 009678 430 KLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 509 (529)
Q Consensus 430 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~ 509 (529)
++||..... .+ . ....|....+++..+..-. .+.+|+|++..+.++ |+--|..+|+..|+.|+.
T Consensus 338 ~~~P~l~~~-----~~-~----~~w~G~r~~t~D~~PiIG~--~~~~gl~~a~G~~g~----G~~~ap~~g~~la~li~g 401 (416)
T PRK00711 338 DLFPGGGDL-----SQ-A----TFWTGLRPMTPDGTPIVGA--TRYKNLWLNTGHGTL----GWTMACGSGQLLADLISG 401 (416)
T ss_pred HHCCCcccc-----cc-c----ceeeccCCCCCCCCCEeCC--cCCCCEEEecCCchh----hhhhhhhHHHHHHHHHcC
Confidence 999974211 11 1 1123444444443332211 135899999877653 677799999999999875
Q ss_pred H
Q 009678 510 D 510 (529)
Q Consensus 510 ~ 510 (529)
.
T Consensus 402 ~ 402 (416)
T PRK00711 402 R 402 (416)
T ss_pred C
Confidence 4
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.71 E-value=4.9e-18 Score=168.33 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=50.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (529)
+..+++.|.+.++++|++|+++++|++|..+ ++.+.+|+|.+|+ ++||+||+|+|++...
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEeccccccee
Confidence 6889999999999999999999999999984 5556679999995 9999999999998644
No 39
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.71 E-value=4.7e-16 Score=155.37 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+..+++.|.+.+.++|++++.+++|++|..+ ++.+ .|++.+| ++.||+||+|++.+.
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 6788899999999999999999999999874 4433 5777777 799999999999875
No 40
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.69 E-value=1.4e-15 Score=153.20 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=105.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-----cEEecCEEEEccCHHHHhhh--CCCchhhhH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQ--LPENWKEMA 343 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-----~~i~ad~VI~a~~~~~~~~l--~~~~~~~~~ 343 (529)
+.+++..|.+.+.+.|++|+++++|++|+.++++ + .+.+.++ .+++||+||+|+|++..... +....
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~---- 269 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-V-VLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRV---- 269 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCC----
Confidence 5678889999999999999999999999874333 3 3433322 36999999999999863221 11100
Q ss_pred HHHHhhcCCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccccCCCCceEEEEecCccccCCCChHHHHHH
Q 009678 344 YFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDA 423 (529)
Q Consensus 344 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 423 (529)
.+.......+.+......... . .|...+.............++..++...... .......+.+..+.
T Consensus 270 ------~i~p~~g~~~~~~~~~~~~~~-~-----~p~~~~~~~~~~~~~~~~~~~~~~igg~~~~-~~~~~~~~~~~~~~ 336 (410)
T PRK12409 270 ------NVYPVKGYSITVNLDDEASRA-A-----APWVSLLDDSAKIVTSRLGADRFRVAGTAEF-NGYNRDIRADRIRP 336 (410)
T ss_pred ------ccccCCceEEEeecCCccccc-c-----CCceeeeecCCcEEEEecCCCcEEEEEEEEe-cCCCCCCCHHHHHH
Confidence 001111111111111111000 0 0100110000000000112333223222111 11222234567888
Q ss_pred HHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHH
Q 009678 424 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 503 (529)
Q Consensus 424 ~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~a 503 (529)
+++.+.++||..... .+ .. ..|....+++..+..-. .+.+|||++..+.+ .|+--|...|+..
T Consensus 337 l~~~~~~~~P~l~~~-----~~-----~~-w~G~r~~t~D~~PiiG~--~~~~~l~~~~G~~~----~G~~~ap~~g~~l 399 (410)
T PRK12409 337 LVDWVRRNFPDVSTR-----RV-----VP-WAGLRPMMPNMMPRVGR--GRRPGVFYNTGHGH----LGWTLSAATADLV 399 (410)
T ss_pred HHHHHHHhCCCCCcc-----cc-----ce-ecccCCCCCCCCCeeCC--CCCCCEEEecCCcc----cchhhcccHHHHH
Confidence 899999999974211 11 11 24555555543332221 23689998875533 3677889999999
Q ss_pred HHHHHHH
Q 009678 504 AQAIVQD 510 (529)
Q Consensus 504 A~~i~~~ 510 (529)
|+.|...
T Consensus 400 A~~i~~~ 406 (410)
T PRK12409 400 AQVVAQK 406 (410)
T ss_pred HHHHcCC
Confidence 9988654
No 41
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.68 E-value=2.3e-15 Score=150.12 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=108.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhc
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 350 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (529)
+.+++..+.+.+.+.|++++++++|++|..+++ .+ .|++.+| ++.||+||+|+|++... +++.. .
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~~g-~~~a~~vV~A~G~~~~~-l~~~~-----------~ 212 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GV-TVTTADG-TYEAKKLVVSAGAWVKD-LLPPL-----------E 212 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eE-EEEeCCC-EEEeeEEEEecCcchhh-hcccc-----------c
Confidence 678888888888889999999999999997433 33 5888888 79999999999987533 33321 0
Q ss_pred CCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccc-cC--CCCceEEEEecCccc---cC----CCChHHH
Q 009678 351 LVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEY-YN--PNQSMLELVFAPAEE---WI----SCSDSEI 420 (529)
Q Consensus 351 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~--~~~~~l~~~~~~~~~---~~----~~~~~~~ 420 (529)
+...+.....+.++.+ .. .... ...|..... .......+ .| .+..++......... .. ..+.++.
T Consensus 213 ~~i~~~~~~~~~~~~~-~~-~~~~-~~~p~~~~~--~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~ 287 (376)
T PRK11259 213 LPLTPVRQVLAWFQAD-GR-YSEP-NRFPAFIWE--VPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAED 287 (376)
T ss_pred CCceEEEEEEEEEecC-Cc-cCCc-cCCCEEEEe--cCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHH
Confidence 1111222222333321 00 0000 000110000 00000000 11 222133222111100 00 1123667
Q ss_pred HHHHHHHHHHhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHH
Q 009678 421 IDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSG 500 (529)
Q Consensus 421 ~~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg 500 (529)
.+.+++.+.++||.... + .. ...+.+.++|+..+..-. ....+|||++..+..+ |+--+...|
T Consensus 288 ~~~l~~~~~~~~P~~~~-------~-~~----~~~g~~~~t~D~~P~ig~-~~~~~gl~~~~G~~g~----G~~~ap~~g 350 (376)
T PRK11259 288 GAELRPFLRNYLPGVGP-------C-LR----GAACTYTNTPDEHFIIDT-LPGHPNVLVASGCSGH----GFKFASVLG 350 (376)
T ss_pred HHHHHHHHHHHCCCCCc-------c-cc----ceEEecccCCCCCceeec-CCCCCCEEEEecccch----hhhccHHHH
Confidence 88899999999996321 1 11 112333344432222111 1126899999877654 566688899
Q ss_pred HHHHHHHHHH
Q 009678 501 KLCAQAIVQD 510 (529)
Q Consensus 501 ~~aA~~i~~~ 510 (529)
+..|+.|+..
T Consensus 351 ~~la~li~~~ 360 (376)
T PRK11259 351 EILADLAQDG 360 (376)
T ss_pred HHHHHHHhcC
Confidence 9999999764
No 42
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.62 E-value=2.8e-14 Score=143.00 Aligned_cols=209 Identities=16% Similarity=0.060 Sum_probs=110.1
Q ss_pred CccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhh
Q 009678 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 349 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~ 349 (529)
|..++..+++.+.++| ..+..+++|+.+..+ . ..+.|.|.+|+ +.||+||+|+|++.....-.... .
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~---------~ 222 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLGE---------L 222 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCC---------C
Confidence 6789999999999999 577779999999974 3 55689999995 99999999999986443310000 0
Q ss_pred cCCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccccC--CCCceEEEEecCccccC-CCChHH-HHHHHH
Q 009678 350 KLVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYYN--PNQSMLELVFAPAEEWI-SCSDSE-IIDATM 425 (529)
Q Consensus 350 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~l 425 (529)
.++-.+.....+.++..-........ + ........ .....+ .+..++.........+. +...++ +...++
T Consensus 223 ~~~~~p~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 296 (387)
T COG0665 223 PLPLRPVRGQALTTEPPEGLLADGLA---P--VVLVVDDG-GGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELL 296 (387)
T ss_pred cCccccccceEEEecCCCcccccccc---c--eEEEecCC-ceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHH
Confidence 00111221111222211100000000 0 00000000 000111 22222222111111121 122222 577899
Q ss_pred HHHHHhCCCCccccccccEEEEEEEeccCCcccccC-CCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHH
Q 009678 426 KELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTI-PNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCA 504 (529)
Q Consensus 426 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA 504 (529)
+.+.+++|...... +.. . +.+..... |+..+..-.... .+|||+|..+... ++--+...|+.+|
T Consensus 297 ~~~~~~~P~l~~~~-----~~~-~----w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~----G~~~~p~~g~~lA 361 (387)
T COG0665 297 RVARALLPGLADAG-----IEA-A----WAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGH----GFTLAPALGRLLA 361 (387)
T ss_pred HHHHHhCccccccc-----cce-e----eeccccCCCCCCCceeCCCCC-CCCEEEEecCCCc----ChhhccHHHHHHH
Confidence 99999999743211 111 1 12333322 443333221222 7899999987664 5666888999999
Q ss_pred HHHHHHHh
Q 009678 505 QAIVQDYV 512 (529)
Q Consensus 505 ~~i~~~l~ 512 (529)
+.|+..-.
T Consensus 362 ~li~g~~~ 369 (387)
T COG0665 362 DLILGGEP 369 (387)
T ss_pred HHHcCCCC
Confidence 99987543
No 43
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.61 E-value=2.1e-14 Score=130.47 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=54.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEec-CCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~-~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
.++-++.+...+++.|+.|+.++.|+.++.. +++..+.|.|.+|..+.|+++|+|+|+|+.+.|
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence 5677888999999999999999999999853 345566899999977999999999999986655
No 44
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.60 E-value=7.2e-15 Score=137.89 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=110.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCCccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~ 135 (529)
..+||+|||||.+||.||..++++|++|+|+|+.+.+|-.+.- .-|+++.........+++..++-..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~---------sGgGrCN~Tn~~~~~~~ls~~p~~~--- 69 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM---------SGGGRCNFTNSEAPDEFLSRNPGNG--- 69 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe---------cCCCCccccccccHHHHHHhCCCcc---
Confidence 4689999999999999999999999999999999988766543 1222222211122444444433111
Q ss_pred ccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHHHH
Q 009678 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (529)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (529)
.+ +.. .+...+...+.+|++.
T Consensus 70 ---------------~f---------------l~s-----------------------------al~~ft~~d~i~~~e~ 90 (408)
T COG2081 70 ---------------HF---------------LKS-----------------------------ALARFTPEDFIDWVEG 90 (408)
T ss_pred ---------------hH---------------HHH-----------------------------HHHhCCHHHHHHHHHh
Confidence 00 000 0111223456667776
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHHcCcEEEeccee
Q 009678 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (529)
+|+.-.. ...|. .|+.-..-..+++.|..+|++.||+|+++++|
T Consensus 91 ~Gi~~~e----------------------------------~~~Gr--~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v 134 (408)
T COG2081 91 LGIALKE----------------------------------EDLGR--MFPDSDKASPIVDALLKELEALGVTIRTRSRV 134 (408)
T ss_pred cCCeeEE----------------------------------ccCce--ecCCccchHHHHHHHHHHHHHcCcEEEecceE
Confidence 6543211 11121 12221114678999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh
Q 009678 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 296 ~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
.+|+.++.+ ..++|++|++|+||.+|+|+|.-...++
T Consensus 135 ~~v~~~~~~--f~l~t~~g~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 135 SSVEKDDSG--FRLDTSSGETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred EeEEecCce--EEEEcCCCCEEEccEEEEecCCcCCCCC
Confidence 999985433 3689999988999999999985444433
No 45
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.60 E-value=3.3e-13 Score=131.05 Aligned_cols=252 Identities=20% Similarity=0.279 Sum_probs=142.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHC----CCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
..++-|||||+|+|+||.+|-|. |.+|+|||+.+..||.+....+....++-.|++.+...+..+.+|++.+.-.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 45789999999999999999986 56999999999999999876544334444666666666667888888775322
Q ss_pred cccccccceeeecCCCCCCc--ccccCCCCCCCchhHHHHHHhcCCCC--ChHHHHHHhhcchhhhhcCchhhhccCCcc
Q 009678 133 RLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEML--TWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (529)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (529)
.....-.+.++......... .++....+. .......+ +........+-++.. -..+...+
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~---------~~~~~~~~~Ls~k~r~eL~kL~l~~-------E~~L~~~~ 145 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLIDKRGQ---------IVDTDSKFGLSEKDRMELIKLLLTP-------EEDLGDKR 145 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeeccCCc---------cccccCcCCCCHHHHHHHHHHhcCC-------HHHhCccc
Confidence 21111111111111110000 010000000 00000111 112222221111110 12344566
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccC----CeeeeecCCCCccchHHHHHHHHH
Q 009678 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
+.+|+.. ++.+.-|..+...++++.+.. |+..+..++..|+....+ +...+...+..++++..|.+.|++
T Consensus 146 I~d~F~~-----~FF~SnFW~~W~T~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~ 219 (500)
T PF06100_consen 146 IEDWFSE-----SFFESNFWYMWSTMFAFQPWH-SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKS 219 (500)
T ss_pred HHHhcch-----hhhcCchhHhHHHhhccCcch-hHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHH
Confidence 7777665 344444555566666777665 444555566666654433 122233334478999999999999
Q ss_pred cCcEEEecceeeEEEecC--C-CCEEEEEE-cCCc--EE---ecCEEEEccCHHH
Q 009678 285 LGGEVRLNSRVQKIELND--D-GTVKNFLL-TNGN--VI---DGDAYVFATPVDI 330 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~--~-~~~~~v~~-~~G~--~i---~ad~VI~a~~~~~ 330 (529)
+||++++++.|+.|..+. + ..+..++. .+|+ +| .-|.|+++.|.-+
T Consensus 220 ~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 220 QGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred CCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 999999999999998742 2 22334443 4553 23 2567777776533
No 46
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.60 E-value=3.1e-14 Score=151.33 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=49.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (529)
+..++..|.+.+.+ |++++++++|++|..+++ .+ .|++.+|..+.||+||+|+|.+..
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~-~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDD-GW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC-EE-EEEECCCcEEECCEEEECCCCCcc
Confidence 67899999999988 999999999999987544 33 488888866789999999998863
No 47
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.58 E-value=1.2e-12 Score=135.62 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CC--cEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G--~~i~ad~VI~a~~~~~ 330 (529)
+..++..++..+.++|++|+++++|++|..+ ++.+++|++. +| .+|+||+||+|+|+|.
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 7788999999999999999999999999874 5556566652 23 3699999999999986
No 48
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.57 E-value=4.3e-14 Score=140.26 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=46.1
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (529)
+..++..|.+.+.++ |++|+++++|++|+. + .|+|++| +++||+||+|+|++..
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCChh
Confidence 678889999988876 999999999999974 2 4778888 5899999999999864
No 49
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.57 E-value=8.2e-13 Score=128.36 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=132.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCe-eeeeeeeecCCcchHHHHHHHcC-CCCccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHIFFGAYPNIQNLFGELG-INDRLQ 135 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~-~d~G~~~~~~~~~~~~~l~~~lg-~~~~~~ 135 (529)
+||+|||||++|+++|++|++.|.+|+|+|+++.+||.+.+.. ..+.. .+.|+|++......+.+++.++. ...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--- 77 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPFFELNN--- 77 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhhccccc---
Confidence 6999999999999999999999999999999999999988754 34444 58999999877777777776653 111
Q ss_pred ccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHH--
Q 009678 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM-- 213 (529)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-- 213 (529)
+.. ...... .+.+.. .|-..+.+..++... ..+. +...+........ .....++++|.
T Consensus 78 ~~~-~~~~~~---~g~~~~------~P~~~~~i~~l~~~~----~~~~---~~~~l~~~~~~~~---~~~~~~~~e~~d~ 137 (377)
T TIGR00031 78 YQH-RVLALY---NNLDLT------LPFNFNQFRKLLGVK----DAQE---LQNFFNAQFKYGD---HVPLEELQEIADP 137 (377)
T ss_pred eeE-EEEEEE---CCeEEc------cCCCHHHHHHhcccc----hHHH---HHHHHHHHhhccc---CCCCCCHHHHHHH
Confidence 111 111111 122211 122222233322110 0111 1111100000000 00113445554
Q ss_pred -HHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhc--cC--CeeeeecCCCCccchHHHHHHHHH-cCc
Q 009678 214 -RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK--HG--SKMAFLDGNPPERLCLPIVEHIQS-LGG 287 (529)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~g~~~~~l~~~l~~~l~~-~G~ 287 (529)
.+. +...+.+.++.+.....|+.++++++..... .+.--+... +. ....++.+| .+.|.+.+.+ .++
T Consensus 138 ~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~G-----yt~~~~~ml~~~~i 210 (377)
T TIGR00031 138 DIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGG-----YTKLFEKMLDHPLI 210 (377)
T ss_pred HHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCccccccccccccc-----HHHHHHHHHhcCCC
Confidence 444 6677888888888889999999999886543 111001100 00 011222222 4556655554 368
Q ss_pred EEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 288 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 288 ~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+|++|+.+..+.. .+++ +....+ .+. +.||.+.+...
T Consensus 211 ~v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~ 247 (377)
T TIGR00031 211 DVKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQ 247 (377)
T ss_pred EEEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchH
Confidence 9999997777764 3332 333334 344 88999877654
No 50
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=140.90 Aligned_cols=62 Identities=31% Similarity=0.365 Sum_probs=53.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcE-EecCEEEEccCHHHHhh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDILKL 333 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~-i~ad~VI~a~~~~~~~~ 333 (529)
+..+...|++.+.++|++|++|++|+.|+..++| +..+.|.+|++ ++|+.||.|+|.+....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~l 214 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPL 214 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHH
Confidence 6788999999999999999999999999997775 34578888866 99999999999876443
No 51
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.55 E-value=7.9e-15 Score=105.39 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=57.8
Q ss_pred EECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecC--CcchHHHHHHHc
Q 009678 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (529)
Q Consensus 62 IIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l 128 (529)
|||||++||++|+.|+++|++|+|+|+++.+||++.+... +|+.+|.|++++.. .++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999998764 77999999999886 457788888875
No 52
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.54 E-value=2.3e-13 Score=136.18 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+..+++.|.+.++++|++++++++|++|..+++ .+ .|.+.+| ++.||.||+|+|.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC-eE-EEEECCC-EEEeCEEEECCCcch
Confidence 678899999999999999999999999987433 33 5788777 799999999999875
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.53 E-value=6.5e-13 Score=133.73 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=42.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+-+.|.+.+++.|++|+++++|++|..+ ++.++.++ .+|++++||.||.|+|.+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCCH
Confidence 3445777788889999999999999874 45554555 4566899999999998753
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.50 E-value=8.7e-12 Score=125.42 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=41.9
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+-..|.+.+++.|++++.+++|++|..+ ++.+..+.+. +++++||.||.|+|..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~-~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAG-DDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeC-CeEEECCEEEEccCcc
Confidence 3345777788889999999999999874 4555556654 4479999999999975
No 55
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.48 E-value=4.2e-14 Score=139.23 Aligned_cols=61 Identities=28% Similarity=0.401 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (529)
...+++.|.+.+++.|++|+++++|++|+.+++ .+..|++++++++.||+||+|+|.....
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTTEEEEESEEEE----SSSG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCcccccCCEEEEecCCCCcc
Confidence 567888999999999999999999999998544 4457888666799999999999864433
No 56
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.47 E-value=1.3e-11 Score=129.24 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=49.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecC-CCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
+..++..|++.+.++|++|+.+++|++|..++ ++.+++|++ .+|+ +++||.||+|+|+|.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 78999999999999999999999999998754 466656654 2344 589999999999985
No 57
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.46 E-value=2e-13 Score=137.85 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=51.3
Q ss_pred CccchHHHHHHHHH----cC--cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh
Q 009678 271 PERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (529)
Q Consensus 271 ~~~l~~~l~~~l~~----~G--~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (529)
+..++..|.+.+++ +| ++|+++++|++|+.+++ ..+.|+|.+| +++||+||+|+|+|....
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~G-~i~A~~VVvaAG~~S~~L 276 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNRG-EIRARFVVVSACGYSLLF 276 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECCC-EEEeCEEEECcChhHHHH
Confidence 67899999999998 77 78999999999997533 3457888888 799999999999987543
No 58
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.42 E-value=6.5e-11 Score=118.26 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+-+.|++..++.|++++.++.|+.+..++++.+.++. .++.+++|+.||.|.|+.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCcc
Confidence 45556888889999999999999999987667654443 333689999999999874
No 59
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.41 E-value=8.1e-11 Score=117.11 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=50.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc-----EEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~-----~i~ad~VI~a~~~~~~~ 332 (529)
..+|+..++..+.++|.++.+.++|+++..+ ++ +++|.+.+.+ +++|+.||+|||+|.-.
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 5688888999999999999999999999985 45 7788865443 58999999999998744
No 60
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.40 E-value=9.4e-11 Score=120.53 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=46.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---Cc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~---G~--~i~ad~VI~a~~~~~ 330 (529)
+..++..+++.+.++|++++++++|++|..+ ++. ++|++.+ |+ +++|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 6788888888899999999999999999874 333 3565543 43 689999999999976
No 61
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.40 E-value=4.3e-11 Score=123.19 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=47.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC----cEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G----~~i~ad~VI~a~~~~~ 330 (529)
+..++..++..+.++|++++.+++|++|..+ ++. +.|++.++ .+++|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 6788888889999999999999999999874 332 35666554 2589999999999986
No 62
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.40 E-value=6.1e-11 Score=118.85 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+++.|++++++++|++|+.++++ + .|++.+|++++||.||.|.|.+.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEEecCCCc
Confidence 456677888888889999999999999875443 3 47778888899999999999854
No 63
>PRK07121 hypothetical protein; Validated
Probab=99.37 E-value=2.6e-11 Score=124.77 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=48.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEec-CEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~-G~--~i~a-d~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|+++++|++|..++++++++|...+ |+ +++| +.||+|||.+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3568888999999999999999999999875567787877543 32 4788 99999998754
No 64
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.35 E-value=3e-10 Score=113.73 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+.+.|.+.+.+.| ++|+.+++|++|+.+++ .+ .|++.+|+++++|.||.|.|.+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEeCCCC
Confidence 456777888888887 99999999999987544 33 5778889889999999999875
No 65
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.35 E-value=5.4e-10 Score=113.04 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=34.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
+.++||+|||||++|+++|..|++.|++|+|+|++...
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998754
No 66
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.34 E-value=5e-12 Score=128.42 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=48.1
Q ss_pred CccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~~~ 332 (529)
+..+.+.|.+.+++.| ++|+++++|++|+.++++.+ .|++ .+|+ +++|++||+|+|.+...
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 6789999999999887 79999999999998556533 3443 3453 69999999999998643
No 67
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.33 E-value=6.9e-10 Score=106.74 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE-cCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~-~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+.+.|+++++++.|+++..++++.. +.+ .++++++||.||.|+|.+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV--VIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE--EEEcCccEEEEeCEEEECCCcch
Confidence 45667788888888999999999999987544432 333 2345799999999999853
No 68
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.33 E-value=6.9e-10 Score=111.75 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhCC
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~~ 336 (529)
.+.+.|.+.+.+.|++|+.+++|++|+.++++ + .|++.+|++++||.||.|.|.+ .+++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 45567777787889999999999999875554 3 4777888889999999999985 3444443
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.33 E-value=1.6e-11 Score=113.92 Aligned_cols=41 Identities=41% Similarity=0.633 Sum_probs=38.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.++||+|||||++|++||+.|++.|++|+|+|+...+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 56899999999999999999999999999999998888754
No 70
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.33 E-value=3e-12 Score=129.99 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEE---EcCC--cEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNG--NVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~---~~~G--~~i~ad~VI~a~~~~~ 330 (529)
+..++..|.+.++++|++|+++++|++|+.++++.+ .|+ +.+| .+++||+||+|+|.+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 788999999999999999999999999997544432 233 2334 2699999999999876
No 71
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.33 E-value=6e-11 Score=120.57 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=45.3
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh
Q 009678 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (529)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (529)
.+...|.+.+.+. |+++ ..+.|++|.. +++.+.+|.+.+|..+.|+.||+|||.+.-..
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g~ 160 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRGK 160 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcchhcC
Confidence 4455666777655 6887 4667999987 46667789999999999999999999865443
No 72
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.32 E-value=2.4e-11 Score=112.31 Aligned_cols=41 Identities=41% Similarity=0.582 Sum_probs=38.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.++||+|||||++||+||+.|++.|.+|+|+|++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 47899999999999999999999999999999999988764
No 73
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.32 E-value=2.1e-10 Score=104.63 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=33.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCCeEEEecccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDV 91 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~~ 91 (529)
+..+||+|||||.+|+++|++|.++ |++|+|+|+++.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 4589999999999999999999875 799999999775
No 74
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.32 E-value=1.9e-10 Score=113.06 Aligned_cols=252 Identities=18% Similarity=0.231 Sum_probs=146.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeecc--------------------CCCCeeeeeeeee
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD--------------------GDGDWYETGLHIF 114 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~--------------------~~g~~~d~G~~~~ 114 (529)
+.++||||+|.|+.-...|..|++.|.+|+.+|+++.-||..++.+. ...+.+|+-+.++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 46899999999999999999999999999999999999999988650 1245667766666
Q ss_pred cCCcchHHHHHHHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhh-
Q 009678 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPA- 193 (529)
Q Consensus 115 ~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 193 (529)
... ..+-+++-+-++...+++...+..+... .+.+.. .|.. -.+++. ...+...++.++.+-+...
T Consensus 82 ~a~-g~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~k------VP~s---r~dvf~-s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 82 YAR-GPLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLHK------VPCS---REDVFK-SKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp ETT-SHHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEEE--------SS---HHHHHC--TTS-HHHHHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHhCCcccceEEEEcceeEEEe--CCEEee------CCCC---HHHhhc-CCCccHHHHHHHHHHHHHHh
Confidence 533 3355666677777666666555444332 122111 1221 122333 2455666665444322211
Q ss_pred -hhcCch-hh--hccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCc--cccHHHHHHHHHHHhhh--ccC-Ceee
Q 009678 194 -IIGGQA-YV--EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQE--KHG-SKMA 264 (529)
Q Consensus 194 -~~~~~~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~g-~~~~ 264 (529)
+....+ .. ......++.++++.++++....+-....+.. ..+.. +.+....+..+..++.. .+| +.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL---~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfL 225 (438)
T PF00996_consen 149 NYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIAL---SLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFL 225 (438)
T ss_dssp HGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS----SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEE
T ss_pred hcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhh---ccCcccccccHHHHHHHHHHHHHHHhccCCCCEE
Confidence 111111 11 1234688999999998887654433222211 11111 11234445555555432 233 3466
Q ss_pred eecCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEE
Q 009678 265 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF 324 (529)
Q Consensus 265 ~~~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~ 324 (529)
|+..| .+.|.+++.+.+.-.|+...+|++|.+|..++++++.+|.+ +|++++|++||.
T Consensus 226 yP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~ 283 (438)
T PF00996_consen 226 YPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG 283 (438)
T ss_dssp EETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred EEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence 67666 68999999999999999999999999999877788888875 788999999994
No 75
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.32 E-value=2.6e-12 Score=126.69 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=52.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
|..++++|+..+.+.|+.|..+++|++|....++ ..+|+|+-| .|++.+||.|+|.|.
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence 8899999999999999999999999999985444 448999999 799999999999987
No 76
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.32 E-value=7.6e-10 Score=110.66 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=49.0
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH-HhhhC
Q 009678 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
...+.+.|.+.+.+ .|++++++++|++|..++++ + .|++.+|++++||.||.|.|.+. +.+.+
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 35677788888887 48999999999999875444 3 57778888899999999999763 34443
No 77
>PRK06184 hypothetical protein; Provisional
Probab=99.31 E-value=7.1e-10 Score=114.63 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=44.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE-cCCcEEecCEEEEccCHHH-HhhhC
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~-~~G~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
+-..|.+.+.+.|++|+++++|++|+.++++..+.+.. .++++++||.||.|.|.+. +++.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 34567777888899999999999999865553322222 4556899999999999864 34444
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.2e-11 Score=104.47 Aligned_cols=41 Identities=44% Similarity=0.646 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.+.||+|||||.+||+|||+|+++|.+|+|+|++-.+||-+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 46699999999999999999999999999999999998866
No 79
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.31 E-value=8.7e-11 Score=120.82 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~--~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+++.|.+.+++.|++|+++++|++|.. +++++++|.. .+|+ ++.||.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 45788899999999999999999999986 4566666654 3332 589999999998643
No 80
>PRK07045 putative monooxygenase; Reviewed
Probab=99.30 E-value=5.1e-10 Score=112.01 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=48.0
Q ss_pred cchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH-Hhh
Q 009678 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKL 333 (529)
Q Consensus 273 ~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~ 333 (529)
.+.+.|.+.+.+ .|++++++++|++|+.++++.++.|++.+|+++++|.||-|.|.+. +++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 455567777654 4799999999999998666665678888998999999999999853 444
No 81
>PRK06847 hypothetical protein; Provisional
Probab=99.30 E-value=2.2e-10 Score=114.24 Aligned_cols=57 Identities=28% Similarity=0.353 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+.+.|++|+++++|++|+.++++ + .|++.+|+++.+|.||.|+|.+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcCCCEEEcCEEEECcCCCc
Confidence 345667788888889999999999999874443 3 57788898999999999999853
No 82
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.30 E-value=2.3e-10 Score=115.29 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+.+.|.+.+.+.|++++++++|++|+.++++ + .|++.+|++++||.||.|.|.+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG-V-TVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-E-EEEECCCCEEEeCEEEEcCCCC
Confidence 467778888888889999999999999874443 3 5777888889999999999875
No 83
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.28 E-value=3.9e-11 Score=122.01 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~--~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+++.|.+.+++.|++|+++++|++|..++++++++|.. .+|+ .+.+|.||+|+|.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 4688899999999999999999999999865667766654 3443 378999999998754
No 84
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.28 E-value=2.1e-09 Score=107.67 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+.+.|.+.+.+.| ++++ ++.|++|+.++++ + .|++.+|++++||.||.|.|.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECCCCEEEeeEEEEeCCCC
Confidence 456677888888887 8888 9999999864444 3 5888888789999999999985
No 85
>PRK08244 hypothetical protein; Provisional
Probab=99.28 E-value=1.2e-09 Score=112.67 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=43.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccCHHH-HhhhC
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
+-+.|.+.+.+.|++++++++|++|+.++++..+.+...+| ++++||.||.|.|.+. +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 33456666777899999999999998755554333333456 4799999999998753 44443
No 86
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=5.2e-11 Score=108.02 Aligned_cols=239 Identities=21% Similarity=0.270 Sum_probs=131.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccC-CC-CeeeeeeeeecCCcchHHHHHHHcCCCCcc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG-DWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~-~g-~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 134 (529)
++|++|||||++|+..|..|++.|++|+|+|+++.+||.+.+..+. .| .+.-.|+|+++.....+++.+..+--
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e---- 76 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTE---- 76 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhh----
Confidence 4799999999999999999999999999999999999999886543 45 34578999999888888777765531
Q ss_pred cccccc-eeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCccHHHHH
Q 009678 135 QWKEHS-MIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 213 (529)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 213 (529)
|.+.. .++.+. ++.. + .+|-.+..+.+++...- .++.++.+.....+ .....+..++++-.
T Consensus 77 -~~~Y~hrVla~~--ng~~--~----~lP~nl~ti~ql~G~~~---~p~~a~~~i~~~~~------~~~~~~~q~~ee~a 138 (374)
T COG0562 77 -FNPYQHRVLALV--NGQL--Y----PLPFNLNTINQLFGKNF---TPDEARKFIEEQAA------EIDIAEPQNLEEQA 138 (374)
T ss_pred -hhhhccceeEEE--CCee--e----eccccHHHHHHHhCccC---CHHHHHHHHHHhhc------cccccchhhhhhHH
Confidence 11110 011111 0110 0 13444445555543211 11222211111110 00011123333333
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHh-hhccCCeeeeecCCCCccchHHHHHHH-HHcCcEEEe
Q 009678 214 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCLPIVEHI-QSLGGEVRL 291 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~~~~~l~~~l~~~l-~~~G~~i~~ 291 (529)
-+. +...+.+.++.......|+.+++++++......-..+- ...+=+. ..+|- |..--+.+.+.+ ....+++++
T Consensus 139 is~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d--~yQGl-P~~GYT~~~~kMl~hp~I~V~L 214 (374)
T COG0562 139 ISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD--TYQGL-PKDGYTAMFEKMLDHPNIDVRL 214 (374)
T ss_pred HHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc--ccccC-ccccHHHHHHHHhcCCCceEEe
Confidence 332 44566777777777788999999998864421100000 0000000 01111 222223333333 344689999
Q ss_pred cceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh
Q 009678 292 NSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (529)
Q Consensus 292 ~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (529)
||.-..+... . ++ +.+..||.|-+...+-.
T Consensus 215 ntd~~~~~~~-~---------~~--~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 215 NTDFFDVKDQ-L---------RA--IPFAPVVYTGPIDAYFD 244 (374)
T ss_pred cCcHHHHhhh-h---------cc--cCCCceEEecchHhhhc
Confidence 9987766531 1 11 44568888887654433
No 87
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.27 E-value=2.4e-09 Score=106.79 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEc-CCcEEecCEEEEccCHH-HHhhhCC
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 336 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~-~G~~i~ad~VI~a~~~~-~~~~l~~ 336 (529)
..+.+.|.+.+.+.+ ++++.+++|+.++.++++ +. ++.. +|++++||.||-|-|.+ .+++.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 466777888888876 899999999999986544 43 6666 99899999999999975 4444544
No 88
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.27 E-value=2.4e-10 Score=114.47 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+.+.|.+.+.+.+...+++++|++|+.++++. .|++.+|++++||.||.|.|.+
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDEV--TVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeE--EEEECCCCEEEEeEEEEecCCC
Confidence 4566778888877754448899999998755543 4778888889999999999985
No 89
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.27 E-value=1.5e-09 Score=108.90 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
.+.+.|.+.+.+. |++++++++|+++..++++ + .|++.+|++++||.||.|.|.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCc
Confidence 4455677777666 8999999999999875444 2 57778888899999999999854
No 90
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.27 E-value=4.1e-09 Score=105.51 Aligned_cols=60 Identities=32% Similarity=0.449 Sum_probs=45.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC--CceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
+.||+|||||++||++|..|++.|++|+|+|++... .+.. ++..+ .++..++++++|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-------------~a~~l---~~~~~~~l~~lGl~~ 63 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRI-------------RAGVL---EQGTVDLLREAGVGE 63 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccccc-------------ceeEE---CHhHHHHHHHcCChH
Confidence 579999999999999999999999999999998742 1211 11122 345668889999754
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.26 E-value=1.7e-11 Score=123.44 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=46.1
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEec-CCCCEEEEE-EcCCc--EEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELN-DDGTVKNFL-LTNGN--VIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~-~~~~~~~v~-~~~G~--~i~ad~VI~a~~~~~~ 331 (529)
+..+.+.|.+.+.+ .|++|+++++|++|..+ ++++.+.++ +.+|+ +++||+||+|+|++..
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 56788899998865 48999999999999875 334432222 44553 6999999999999873
No 92
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.26 E-value=6.5e-11 Score=121.26 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=47.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CC--cEEecCEEEEccCHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~--~G--~~i~ad~VI~a~~~~ 329 (529)
...++..|.+.+++.|++|+++++|++|.. +++++++|.+. +| ..++|+.||+|+|.+
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 457888899999999999999999999997 46677777663 33 358999999999864
No 93
>PRK07190 hypothetical protein; Provisional
Probab=99.26 E-value=2.2e-09 Score=109.68 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH-HhhhC
Q 009678 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
..|.+.+.+.|++++++++|++|+.++++. .+++.+|++++|+.||.|.|.+. +++.+
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 345667778899999999999999865553 35567788899999999999853 44443
No 94
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.25 E-value=9.5e-11 Score=115.09 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhc
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 350 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (529)
+..++..|++.+.++|++++.+++|++|..+ ++.+..|.|.+| +++||+||+|+|+++-. +.+ . +
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~-~--~--------- 200 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLP-L--P--------- 200 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhhh-ccc-C--C---------
Confidence 7899999999999999999999999999974 555667888888 89999999999998754 332 1 0
Q ss_pred CCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccccC-CCCceEEEEecCccccCCCChHHHHHHHHHHHH
Q 009678 351 LVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYYN-PNQSMLELVFAPAEEWISCSDSEIIDATMKELA 429 (529)
Q Consensus 351 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 429 (529)
+...... .+.+..+...... .+......+.. ....| ++..++.........+....+++..+.+++.+.
T Consensus 201 ~~~~~g~--~~~~~~~~~~~~~-----~~~~~~~~~~~---~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (337)
T TIGR02352 201 LRPVRGQ--PLRLEAPAVPLLN-----RPLRAVVYGRR---VYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAY 270 (337)
T ss_pred ccccCce--EEEeeccccccCC-----cccceEEEcCC---EEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHH
Confidence 1111111 1223222100000 00000000000 00111 122232222222223333345677889999999
Q ss_pred HhCCCCccccccccEEEEEEEeccCCcccccCCCCCCCCCCCCCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHH
Q 009678 430 KLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 509 (529)
Q Consensus 430 ~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~ 509 (529)
++||.... ..+.....|.+...++..+..-. ....+|+|+++.+.+. |+--+...|+..|+.|+.
T Consensus 271 ~~~P~l~~----------~~~~~~~~g~r~~t~D~~piig~-~~~~~~~~~~~g~~g~----G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 271 TILPALKE----------ARLLETWAGLRPGTPDNLPYIGE-HPEDRRLLIATGHYRN----GILLAPATAEVIADLILG 335 (337)
T ss_pred HhCCCccc----------CcHHHheecCCCCCCCCCCEeCc-cCCCCCEEEEcccccC----ceehhhHHHHHHHHHHhc
Confidence 99996421 11222233444444443222211 1125799999976553 566788899999998874
No 95
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.25 E-value=2.1e-10 Score=113.50 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEecCEEEEccCHHH-HhhhC
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~-~G~--~i~ad~VI~a~~~~~-~~~l~ 335 (529)
.+-+.|.+.+++.|++|+++++|++++.+.++....+... +|+ +++||.||-|-|.+. +++.+
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l 178 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQL 178 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhc
Confidence 4556788888888999999999999987655533233332 342 689999999999854 44443
No 96
>PRK09126 hypothetical protein; Provisional
Probab=99.25 E-value=5.9e-10 Score=111.81 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=40.9
Q ss_pred hHHHHHHHH-HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 275 CLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 275 ~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+.|.+.+. ..|++|+++++|++++.++++ + .|++.+|++++||.||.|.|.+
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-A-QVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-E-EEEEcCCCEEEeCEEEEeCCCC
Confidence 344555554 358999999999999875443 3 5777888899999999999975
No 97
>PLN02463 lycopene beta cyclase
Probab=99.25 E-value=7.8e-09 Score=103.76 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+.+.|.+.+.+.|++++ +++|++|+.++++ ..|++.+|++++||.||.|+|..
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCC
Confidence 3455667888888899986 6799999975443 26888899889999999999975
No 98
>PRK06834 hypothetical protein; Provisional
Probab=99.24 E-value=1.7e-09 Score=110.53 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+-+.|.+.+++.|++|+++++|++|+.++++. .|++.+|++++||.||.|.|.+.
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v--~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTGV--DVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCC
Confidence 44556777788899999999999999854443 46777887899999999998854
No 99
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.23 E-value=7.9e-09 Score=104.28 Aligned_cols=37 Identities=32% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3467899999999999999999999999999999974
No 100
>PRK07588 hypothetical protein; Provisional
Probab=99.23 E-value=1.2e-09 Score=109.54 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=40.9
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
|...|.+.+. .|++|+++++|++|+.++++ + .|++.+|+++++|.||-|.|.+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCc
Confidence 3444555443 37899999999999975444 3 57888998899999999999753
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.23 E-value=6.4e-09 Score=108.37 Aligned_cols=62 Identities=31% Similarity=0.393 Sum_probs=47.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
...+||+|||||++||++|..|++.|++|+|+|++..+....+.. ...++..++++++|+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~----------------~l~~~~~~~L~~lGl~~ 69 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAV----------------GIDDEALRVLQAIGLAD 69 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcee----------------eeCHHHHHHHHHcCChh
Confidence 467899999999999999999999999999999987653221110 11345678888888754
No 102
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.22 E-value=5.5e-09 Score=104.39 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+||+|||||++|++||+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 103
>PRK08013 oxidoreductase; Provisional
Probab=99.22 E-value=4.3e-09 Score=105.61 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhC
Q 009678 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (529)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~ 335 (529)
.+-..|.+.+.+. |++++++++|++|+.++++. .|++.+|++++||.||-|-|.+ .+++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEA--FLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE--EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 4555677777765 79999999999998755443 5777889899999999999975 344443
No 104
>PRK06185 hypothetical protein; Provisional
Probab=99.21 E-value=8.2e-09 Score=104.11 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEE--EcCCc-EEecCEEEEccCHHH-HhhhC
Q 009678 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL--LTNGN-VIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~--~~~G~-~i~ad~VI~a~~~~~-~~~l~ 335 (529)
.+.+.|.+.+.+. |++++.+++|+++..+ ++.+.+|+ +.+|+ +++||.||.|.|.+. +.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 4556677777664 7999999999999875 44444444 34664 799999999999864 44443
No 105
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.20 E-value=3.1e-09 Score=106.04 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=42.7
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+-..|.+.+.+. |++++.+++|++++.++++. .|++.+|++++||.||.|.|.+.
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~--~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN--RVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeE--EEEECCCCEEEeeEEEEecCCCc
Confidence 334556666554 68999999999999855543 57888998999999999999854
No 106
>PLN02697 lycopene epsilon cyclase
Probab=99.20 E-value=2.1e-08 Score=102.24 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..|.+.|.+.+.+.|+++ ++++|++|..++++. ..+.+.+|++++|+.||.|+|.+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~-~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGL-RLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcE-EEEEEcCCcEEECCEEEECCCcCh
Confidence 345567888888889998 788999998754443 234567788899999999999976
No 107
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.19 E-value=1.2e-08 Score=102.69 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=44.4
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhC
Q 009678 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (529)
Q Consensus 274 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~ 335 (529)
+...|.+.+.+. |++++++++|++|+.++++ + .|++.+|++++||.||.|.|.+ .+++.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 334566666554 6999999999999875444 3 5778889899999999999974 334443
No 108
>PRK06126 hypothetical protein; Provisional
Probab=99.19 E-value=1.1e-09 Score=114.41 Aligned_cols=62 Identities=27% Similarity=0.334 Sum_probs=45.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
+..+||+|||||++||++|..|+++|++|+|+|++....-. .. + ....+...++++++|+.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~------~r-------a---~~l~~r~~e~L~~lGl~~ 66 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN------PK-------A---NTTSARSMEHFRRLGIAD 66 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC------Cc-------c---ccCCHHHHHHHHhcChHH
Confidence 45789999999999999999999999999999987532110 00 0 012345678888888754
No 109
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.19 E-value=1e-08 Score=107.25 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=47.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
.+.++||+|||||++||++|+.|++.|++|+|+|++.......+.. ....+..++++++|+.+
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~----------------~l~~~~~~~l~~lGl~~ 82 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAI----------------CFAKRSLEIFDRLGCGE 82 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEE----------------EEcHHHHHHHHHcCCcH
Confidence 4577899999999999999999999999999999987542211110 11345678888888754
No 110
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.19 E-value=3.8e-10 Score=112.57 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=45.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
...+++.|.+.+++.|++++++++|++|..+ ++. +.|++ +++++.||.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCCCcc
Confidence 3567888999999999999999999999864 333 35766 455899999999999754
No 111
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.18 E-value=1.6e-08 Score=101.21 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+.+.|++++ ++.|+.+..++++ .+.|++.+|++++|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 4566778888888888885 6689999864233 3367888887899999999999875
No 112
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.18 E-value=1.9e-10 Score=116.31 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=46.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G~--~i~ad~VI~a~~~~~~ 331 (529)
...++..|.+.++++|++|+++++|++|..+ +++|++|... +|+ .|+|+.||+||+....
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3568889999999999999999999999984 6688888765 454 4789999999987654
No 113
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.18 E-value=6.1e-09 Score=104.05 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=32.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
+||+|||||++|++||+.|+++|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 114
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=1.5e-09 Score=113.30 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEecC-EEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~-~G~--~i~ad-~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|+++++|++|..+++++|++|... +|+ .+.|+ .||+|||.+.
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 356777888888889999999999999998667888888653 343 47787 5999998754
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.16 E-value=4.9e-10 Score=112.81 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEE-EcCCc--EEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~-~~~G~--~i~ad~VI~a~~~~ 329 (529)
..+++.|.+.+++ .|++|+++++|++|..+ ++.+++|. +.+|+ .+.|+.||+|||..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4678888888875 48999999999999864 56666754 33554 58999999999874
No 116
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=1.4e-09 Score=112.66 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEec-CEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~-~G~--~i~a-d~VI~a~~~~~ 330 (529)
..|+..|.+.+++.|++|+++++|++|.. ++++|++|... +|+ .+.| +.||+|||.+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 67889999999999999999999999986 46788888543 443 3556 57999998754
No 117
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=1.2e-08 Score=102.49 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=41.4
Q ss_pred hHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 275 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 275 ~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
-+.|.+.+.+ .|++++++++|++|..++++ + .|++.+|+++++|.||.|.|.+.
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCh
Confidence 3455666655 47899999999999874444 3 47788888899999999999753
No 118
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.15 E-value=3.6e-10 Score=117.08 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-------CC-cEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~-------~G-~~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.+++.|++|++++.|++|..++++++.+|... ++ ..+.|+.||+|||.+.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46788899999889999999999999987555677777653 22 3588999999998854
No 119
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=6.2e-10 Score=117.09 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccCHHH
Q 009678 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (529)
+.|.+.+++.|++|++++.|++|..+ ++++++|... +|+ .+.|+.||+|||.+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 55666777889999999999999874 5778788753 453 588999999998754
No 120
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.14 E-value=8.8e-11 Score=101.67 Aligned_cols=41 Identities=44% Similarity=0.601 Sum_probs=34.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.++||+|||||++||+||+.|++.|++|+|+|++..+||.+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~ 56 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGM 56 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 46899999999999999999999999999999999888865
No 121
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.14 E-value=1.2e-10 Score=105.41 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.+.+++.++++++++.|++|.++++++ .|++.+|++++||+||+|||..
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w--~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGDGW--TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETTTE--EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEeccEE--EEEEEecceeeeeeEEEeeecc
Confidence 344555566678899999999999976664 6888888889999999999964
No 122
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.14 E-value=7.2e-10 Score=114.66 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=46.0
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecC-CCCEEEEEEc-CCc--EEecCEEEEccCHH
Q 009678 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVD 329 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-~~~~~~v~~~-~G~--~i~ad~VI~a~~~~ 329 (529)
...++..|.+.+.++ |++|++++.|+++..++ ++++++|... +|+ .+.|+.||+|||..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356788888888765 89999999999998753 3777787643 453 37899999999874
No 123
>PRK12839 hypothetical protein; Provisional
Probab=99.13 E-value=2.5e-09 Score=111.15 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE--cCCc-EE-ecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VI-DGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~--~~G~-~i-~ad~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|+++++|++|..++++++++|.. .+|+ .+ .++.||+|||.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 46788899999999999999999999998755678888864 3453 23 3589999998754
No 124
>PLN02661 Putative thiazole synthesis
Probab=99.13 E-value=1.6e-09 Score=102.76 Aligned_cols=43 Identities=37% Similarity=0.395 Sum_probs=38.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCCeEEEeccccCCcee
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKI 96 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~-g~~V~llEa~~~~GG~~ 96 (529)
...++||+|||||++|++||++|++. |++|+|+|+...+||..
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 34678999999999999999999986 89999999998887743
No 125
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=2.3e-09 Score=112.11 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=47.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc--CCc-EEec-CEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~--~G~-~i~a-d~VI~a~~~~~ 330 (529)
+..++..|.+.+++.|++|+++++|++|..+ ++++++|... ++. +++| +.||+|+|.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4578899999999999999999999999874 6677676543 332 4788 99999998865
No 126
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=5.3e-10 Score=116.67 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=48.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+.+.|++|++++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 35688888888888899999999999998755678888864 3564 478999999998754
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=99.13 E-value=3.1e-08 Score=97.42 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=44.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC--ceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G--G~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (529)
.+||+|||||++|+++|+.|++. ++|+|+|+++..+ |... ..|. ...++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~----------~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSK----------PCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccC----------cCcC----ccCHHHHHHHHHcCCC
Confidence 37999999999999999999999 9999999987542 1100 0111 1234567888888874
No 128
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.12 E-value=9.2e-10 Score=115.41 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..++..|.+.+++.|++|++++.|+++..++++++.+|.. .+|+ .+.|+.||+|||.+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 5788899998989999999999999988745677878764 3564 578999999998753
No 129
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=8.5e-10 Score=115.49 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..++..|.+.+++.|++|++++.|++|..++++++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688889998988999999999999998755577888764 3564 578999999998754
No 130
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=8.7e-10 Score=114.78 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (529)
..++..|.+.+.+.|++|++++.|+++..+ +|++++|... +|+ .+.|+.||+|||...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 467888888888889999999999999974 6788888753 332 578999999998764
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.11 E-value=3.1e-10 Score=114.02 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+.+.+ ++++++++|++|..++++ + .|++.+|+++.||.||.|.|.+.
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcCh
Confidence 345667777777765 899999999999875443 3 47778888899999999999864
No 132
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.11 E-value=1.9e-09 Score=112.98 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.+++.|++|++++.|++|..+ ++++.+|.. .+|+ .+.|+.||+|||.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 467788888888889999999999999874 677777653 3564 588999999999754
No 133
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=3.3e-08 Score=98.27 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhC
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~ 335 (529)
..|.+.|.+.+.+.+ +++++++.|++|..++++ + .|++.++ +++||.||-|-|.+ .+++.+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchhHHhc
Confidence 455667777777765 889999999999875444 3 4777666 89999999999985 344443
No 134
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.11 E-value=3.6e-08 Score=100.07 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHcC---cEEEecceeeEEEec-----CCCCEEEEEEcCCcEEecCEEEEccCHHH-HhhhC
Q 009678 273 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 273 ~l~~~l~~~l~~~G---~~i~~~t~V~~I~~~-----~~~~~~~v~~~~G~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
.+...|.+.+.+.+ ++++++++|++|+.+ +++..+.|++.+|++++||.||-|-|.+. +++.+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 34556777777664 899999999999752 12222368888999999999999998853 34443
No 135
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.10 E-value=2.1e-09 Score=107.24 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=50.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (529)
+..++..|.+.+.+ |++|+++++|++|+.+++ . +.|+|.+|+.+.||+||+|+|+++..
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-G-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-e-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 78999999999998 999999999999987433 3 36888899779999999999998643
No 136
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.10 E-value=4.6e-08 Score=97.67 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=45.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC--CceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. .+. .++..+ .++..++++++|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~-------------~~a~~l---~~~~~~~L~~lGl~~ 63 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGR-------------IRAGVL---EQGTVDLLREAGVDE 63 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCc-------------eeEeeE---CHHHHHHHHHCCChH
Confidence 479999999999999999999999999999998741 111 122222 345678889999754
No 137
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.10 E-value=1.1e-09 Score=114.75 Aligned_cols=60 Identities=8% Similarity=0.100 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+.+.|++|++++.++++..++++++.+|.. .+|+ .+.|+.||+|||.+.
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 35678889998888899999999999988754677878764 2453 578999999998753
No 138
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=3.9e-09 Score=109.69 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc-CCc--EEecC-EEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~-~G~--~i~ad-~VI~a~~~~~ 330 (529)
..++..|.+.+++.|++|+++++|++|..+ ++++++|... +|+ .+.|+ .||+|||...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 568888999999999999999999999974 6778887653 443 47785 6999997754
No 139
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.09 E-value=1.1e-09 Score=110.63 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...++|+|||||++||+||.+|++.|++|+|+|+++.+||...-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999997643
No 140
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.08 E-value=2.8e-09 Score=109.44 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=46.6
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcC-C--cEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~~~-G--~~i~ad~VI~a~~~~~ 330 (529)
...+...|.+.+++ .|++|++++.|++|..+ ++.+.+|.+.+ + ..+.|+.||+|||.+.
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 35678888888887 58999999999999874 56666666543 3 3689999999999865
No 141
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=1.1e-08 Score=107.05 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=47.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-c--EEec-CEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N--VIDG-DAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-~--~i~a-d~VI~a~~~~~ 330 (529)
...++..|.+.++++|++|+++++|++|..+ ++++++|.+.++ + .+.| +.||+|||.+.
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 3568889999999999999999999999864 677778876433 2 4676 68999998754
No 142
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=3.1e-09 Score=110.55 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..++..|.+.+++.|++|++++.|+++..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4677888888888899999999999998754554767653 4564 488999999998754
No 143
>PLN02815 L-aspartate oxidase
Probab=99.08 E-value=2.1e-09 Score=111.69 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=37.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
..++||+|||||++||+||..+++.| +|+|+||....||.+
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 35689999999999999999999999 999999999888754
No 144
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.07 E-value=5.6e-09 Score=109.28 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=40.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
+.++||+|||||++||+||+.++++|.+|+||||....||.+..
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 35789999999999999999999999999999999999998754
No 145
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.4e-09 Score=111.94 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..++..|.+.+.+.|+++++++.|+++..++++.+.+|.. .+|+ .+.|+.||+|||...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 5688888888888899999999999998755677778764 3454 578999999998754
No 146
>PRK06996 hypothetical protein; Provisional
Probab=99.05 E-value=7.3e-08 Score=96.68 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC---cEEecCEEEEccCH--HHHhhhC
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQL 335 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G---~~i~ad~VI~a~~~--~~~~~l~ 335 (529)
..+.+.|.+.+.+.|++++.+++|++|+.++++. .++..+| ++++||.||-|.|. ....+.+
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 3566778888888899999999999998755553 4555544 58999999999884 4444443
No 147
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=5.5e-09 Score=109.25 Aligned_cols=41 Identities=32% Similarity=0.337 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.++||+|||||++||+||..+++.|.+|+|+||....||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 35699999999999999999999999999999998877754
No 148
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=2.9e-09 Score=111.27 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEE---EcCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~---~~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|++++.|++|..+ ++.+.++. +.+|+ .+.|+.||+|||.+.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 3568888999898899999999999999874 66666664 34564 589999999998854
No 149
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=2.4e-09 Score=112.04 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=48.1
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCC---CCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~---~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|++++.|++|..+++ +++.+|.. .+|+ .+.|+.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356788899989889999999999999987542 77777764 3564 478999999998754
No 150
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.04 E-value=8.5e-09 Score=107.30 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
+.++||+|||+|++|++||..+++.|.+|+|||+....||.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 35789999999999999999999999999999999988887654
No 151
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=5.1e-09 Score=110.21 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
.++||+|||||+|||+||..+++.|.+|+|+||....||.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999998766643
No 152
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.03 E-value=2.6e-09 Score=108.25 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecC-CCCEEEEEEcC-CcEEecCEEEEccCHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPVD 329 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~v~~~~-G~~i~ad~VI~a~~~~ 329 (529)
...+++.|.+.+++.|++|+++++|++|..++ ++++++|.+.+ +.++.|+.||+|+|.+
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 45788999999999999999999999998753 56777776543 3479999999999853
No 153
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.03 E-value=1.6e-07 Score=99.07 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=46.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC-CCCeEEEeccccC--CceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~-g~~V~llEa~~~~--GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 131 (529)
+.++||+|||||++||++|..|++. |.+|+|+|++... .|+.. +..+...++++.+|+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------------gl~prtleiL~~lGl~ 91 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD------------------GIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------------EEChHHHHHHHhccch
Confidence 4578999999999999999999994 9999999987532 12211 1245677899999976
Q ss_pred Cc
Q 009678 132 DR 133 (529)
Q Consensus 132 ~~ 133 (529)
..
T Consensus 92 d~ 93 (634)
T PRK08294 92 ER 93 (634)
T ss_pred HH
Confidence 43
No 154
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.02 E-value=1.3e-08 Score=105.08 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
+.++|||||||| +||+||+++++.|.+|+|||+....||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 468899999999 999999999999999999999998888663
No 155
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.02 E-value=1.1e-09 Score=115.35 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.+.+.|++|+.+++|++|.. +++++.++.. .+|+ .+.|+.||+|||.+.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 35667788888889999999999999997 4677767654 3564 367999999998754
No 156
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.01 E-value=8.4e-09 Score=105.15 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=46.2
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
...+++.|.+.+++.|++++.+ .|+.|.. +++.+++|.+ +|+.+.|+.||+|||.+.
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 3568888999999999999876 7999876 4566767776 566899999999999865
No 157
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=9.3e-09 Score=107.11 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc--cCCceeE
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~--~~GG~~~ 97 (529)
.++||+|||+|.+||+||..+++.|.+|+||||.. ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7888764
No 158
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.99 E-value=1.1e-08 Score=87.77 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=36.1
Q ss_pred HHHHHHHHcCcEEE-ecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCH
Q 009678 277 PIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (529)
Q Consensus 277 ~l~~~l~~~G~~i~-~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~ 328 (529)
.+.+.+ ..|++|. .+.+|++|...+++. .|.+.+|..+.||+||+|+|.
T Consensus 106 ~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 106 RLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 344444 4454443 467899999876664 588899999999999999984
No 159
>PLN02985 squalene monooxygenase
Probab=98.99 E-value=3.6e-07 Score=93.91 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+..+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 45678999999999999999999999999999999743
No 160
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.98 E-value=2.6e-09 Score=109.89 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC--Cc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~--G~--~i~ad~VI~a~~~~~ 330 (529)
..+++.|.+.+. .|++|++++.|++|.. +++.+.+|.+.+ |+ .+.|+.||+|||.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457777777765 5899999999999986 466777776543 33 588999999998754
No 161
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.98 E-value=3.4e-09 Score=118.94 Aligned_cols=44 Identities=43% Similarity=0.619 Sum_probs=40.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...++||||||+|.+||+||..+++.|.+|+||||....||.+.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 35679999999999999999999999999999999999999764
No 162
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.1e-08 Score=107.29 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+++.|.+.+.+ .|++++.++.|++|..+ ++.+++|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4577888888766 58999999999999874 566666643 4564 478999999998863
No 163
>PRK07236 hypothetical protein; Provisional
Probab=98.97 E-value=1.1e-08 Score=102.23 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
...||+|||||++||++|+.|++.|++|+|+|+++..-. . .|.-+ ...++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~----------~g~gi--~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD---G----------RGAGI--VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC---C----------CCcee--EeCHHHHHHHHHcCCCc
Confidence 457999999999999999999999999999999764210 0 11100 01356778899999754
No 164
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.97 E-value=6.5e-10 Score=111.98 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcC---CcEEecCEEEEccCHHHHhhhCCC
Q 009678 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNVIDGDAYVFATPVDILKLQLPE 337 (529)
Q Consensus 277 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~---G~~i~ad~VI~a~~~~~~~~l~~~ 337 (529)
.|.+.+.+.|++|++++.|+++.. +++++.+|++.+ ..+++|+.||-||+-..+..+..-
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 345555677999999999999998 466677887654 347999999999997766666443
No 165
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.97 E-value=1e-08 Score=106.75 Aligned_cols=59 Identities=19% Similarity=0.082 Sum_probs=46.0
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+.+. +++++.++.|++|..+ ++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356888888887764 7999999999999974 667777653 4563 578999999998754
No 166
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.97 E-value=1.2e-08 Score=91.27 Aligned_cols=43 Identities=30% Similarity=0.584 Sum_probs=38.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC------CCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG------HKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g------~~V~llEa~~~~GG~~~~ 98 (529)
..++|+||||||.|.++||.|++.+ ..|+|+|+....||..+-
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGk 57 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGK 57 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccc
Confidence 3479999999999999999999975 689999999999887754
No 167
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.97 E-value=9.1e-09 Score=107.47 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.+.+. ++++++++.|++|..+ ++.+.+|.. .+|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46777788877665 7999999999999974 667766543 4663 688999999998754
No 168
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.96 E-value=1.9e-09 Score=104.47 Aligned_cols=44 Identities=32% Similarity=0.427 Sum_probs=40.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..++||+|||||.+|.-||.-.+-+|.+|.|+|+.+..+|..+.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSk 108 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSK 108 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcccc
Confidence 46799999999999999999999999999999999999997755
No 169
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.96 E-value=6.1e-09 Score=100.46 Aligned_cols=38 Identities=45% Similarity=0.717 Sum_probs=34.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
+||+|||||++||+||..|++.|++|+|+|+.+ .||..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcce
Confidence 599999999999999999999999999999876 66644
No 170
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.96 E-value=1.4e-08 Score=106.52 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCCEEEEE---EcCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~v~---~~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.++++| ++|++++.|++|..+ ++++.+|. +.+|+ .+.|+.||+|||.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 456677888887776 999999999999864 56666663 34554 589999999999764
No 171
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.96 E-value=1.2e-08 Score=106.85 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHH----cCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~----~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G~--~i~ad~VI~a~~~~ 329 (529)
..++..|.+.+++ .|++|+++++|++|..++++++++|... +|+ .+.|+.||+|||.+
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4566666665544 3799999999999987556678888753 453 57899999999875
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.95 E-value=7.6e-09 Score=105.95 Aligned_cols=57 Identities=28% Similarity=0.422 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+...+.+.++++|++++++++|++|..++++ + .+++.+|+++.+|.||+|+|...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECCCCEEEeCEEEEeecCCc
Confidence 356678888899999999999999999864443 3 46677788899999999998654
No 173
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.93 E-value=5.2e-09 Score=102.31 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=51.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC--cEEecCEEEEccCHHHHhhhC
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 335 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G--~~i~ad~VI~a~~~~~~~~l~ 335 (529)
.++.+.|.+.++++|++|+.+++|+++..+ ++.+..|.|.++ ..++||+||+|+|+|....|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 477888999999999999999999999974 555667777766 479999999999999655553
No 174
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.93 E-value=4.9e-09 Score=107.91 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=46.4
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcC-Cc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~-G~--~i~ad~VI~a~~~~~ 330 (529)
...+++.|.+.+.+. |++|+.+++|++|..+ ++++++|.+.+ ++ .+.|+.||+|||...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 356888898888775 8999999999999863 66777776543 32 589999999998753
No 175
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.93 E-value=1.9e-07 Score=92.47 Aligned_cols=55 Identities=31% Similarity=0.412 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
..+-+.+.+.+. .++.+.+++.|++|+.++++. .|++.+|++++|+.||-|.|..
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~--~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGDGV--LVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCceE--EEEECCCCEEEeeEEEECCCcc
Confidence 344556677777 455788999999999754433 5788999899999999999854
No 176
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.92 E-value=8.7e-09 Score=99.50 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
.+...+.+.+++. +++|. ++.|++|.. +++++.+|.+.+|+.+.||.||+|||.+.
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 3444566666664 57774 678999998 57888999999999999999999999843
No 177
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.92 E-value=1.7e-08 Score=101.97 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+-+.|.+.+.++|+++..++ |+++..++++.+..|++.+|++++||.||=|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4666778888889999998875 888888778888899999999999999999999753
No 178
>PRK06116 glutathione reductase; Validated
Probab=98.92 E-value=9e-09 Score=104.95 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+.+.+.+.++++|+++++++.|++|+.++++.+ .+++.+|+++.+|.||+|+|..
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCC
Confidence 4566788889999999999999999987545533 4777788889999999999864
No 179
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.91 E-value=1.9e-08 Score=104.31 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecC-----CCCEEEEEEc---CCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-----~~~~~~v~~~---~G~--~i~ad~VI~a~~~~~ 330 (529)
..+...|.+.+.+. |++|++++.|+++..++ ++++++|... +|+ .+.|+.||+|||...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 45677788877765 79999999999998643 3677787642 454 588999999998754
No 180
>PRK08275 putative oxidoreductase; Provisional
Probab=98.91 E-value=3.5e-08 Score=102.84 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
..+.+.|.+.+++.|++|++++.|++|..++++++.+|.. .+|+ .+.|+.||+|||...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3678889998988999999999999998754667777753 3564 478999999998854
No 181
>PRK06753 hypothetical protein; Provisional
Probab=98.91 E-value=4.8e-09 Score=104.50 Aligned_cols=35 Identities=34% Similarity=0.695 Sum_probs=32.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
+||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999998764
No 182
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.91 E-value=2.9e-07 Score=88.35 Aligned_cols=58 Identities=36% Similarity=0.535 Sum_probs=50.7
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.-.++..+.+.+++.|++|+++|.|..|+.. ++.+..|.+.+|+++.+|+||+|.|-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcc
Confidence 3567889999999999999999999999984 555668999999999999999999753
No 183
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.90 E-value=4.9e-09 Score=101.18 Aligned_cols=63 Identities=24% Similarity=0.224 Sum_probs=51.7
Q ss_pred CccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE-----cCCcEEecCEEEEccCHHHHhhh
Q 009678 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL-----TNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~-----~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
.+.|.+.|.+.+.++ |++++++++|++|++.+++.. .|++ .+..+++|+.|++.+|.+.+..|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 578999999999888 899999999999999877732 3443 23347999999999999987776
No 184
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.89 E-value=6.5e-09 Score=106.50 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC--cEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G--~~i~ad~VI~a~~~~~ 330 (529)
..+...+.+.+++.|+++++++.|++|+.++ +.+ .+++.+| +++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeCCcEEEEEeCEEEEecCCcc
Confidence 3456677888889999999999999998643 333 3666667 4799999999998643
No 185
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.89 E-value=2.5e-08 Score=101.37 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-~~i~ad~VI~a~~~~~ 330 (529)
..+...+.+.++++|+++++++.|++|..++++.+ .+++.+| +++.+|.||+|+|...
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCCc
Confidence 34567778888899999999999999986434422 4666677 5699999999998654
No 186
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.88 E-value=1.7e-08 Score=100.02 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc--EEecCEEEEccCHHHHhhh
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~--~i~ad~VI~a~~~~~~~~l 334 (529)
++.+.|.+.+++.|++|+++++|++++.+ ++.+..+.+.+|+ .++||.||+|+|......|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 57788888999999999999999999875 4445455555553 4899999999997544444
No 187
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.3e-08 Score=100.67 Aligned_cols=45 Identities=36% Similarity=0.472 Sum_probs=40.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCC-eEEEeccccCCceeEe
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIAA 98 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~-V~llEa~~~~GG~~~~ 98 (529)
....+||+|||||++||++|++|.++|.. ++||||++.+||.-..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 35678999999999999999999999998 9999999999997544
No 188
>PRK09897 hypothetical protein; Provisional
Probab=98.86 E-value=3.4e-08 Score=100.78 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHcC--cEEEecceeeEEEecCCCCEEEEEEcC-CcEEecCEEEEccCH
Q 009678 273 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 328 (529)
Q Consensus 273 ~l~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~~~~~v~~~~-G~~i~ad~VI~a~~~ 328 (529)
...+.+.+.+.+.| ++++.+++|++|+.++++. .|++.+ |+.+.||+||+|+|.
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~--~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGV--MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEE--EEEECCCCeEEEcCEEEECCCC
Confidence 33445666666776 7888999999998754443 476655 467999999999986
No 189
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.85 E-value=9.5e-08 Score=105.93 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=40.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998854
No 190
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.85 E-value=2.4e-08 Score=90.77 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=37.0
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
-|||||+|.+||+|+..|...|-.|+|+|+...+||...-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998789999999999998754
No 191
>PRK05868 hypothetical protein; Validated
Probab=98.85 E-value=1.1e-08 Score=101.31 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=38.9
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH-HHhhhC
Q 009678 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (529)
Q Consensus 284 ~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~-~~~~l~ 335 (529)
..|+++++++.|++|+.+ ++.+ .|++.+|++++||.||-|-|.+ .+++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 357899999999999864 3333 5788899899999999999875 444443
No 192
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.85 E-value=3.5e-08 Score=101.03 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..+||+|||||++|++||..|+++|++|+|+|+.. +||.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46899999999999999999999999999999876 8998754
No 193
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.84 E-value=9.9e-08 Score=97.04 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=37.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
++||+|||||++|++||..++++|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999998 578998754
No 194
>PRK12831 putative oxidoreductase; Provisional
Probab=98.84 E-value=2.1e-07 Score=94.62 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
....+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 35678999999999999999999999999999999999999874
No 195
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.84 E-value=2.1e-08 Score=100.76 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEE---cCCcEEecCEEEEccCHHH-HhhhC
Q 009678 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQL 335 (529)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~~i~ad~VI~a~~~~~-~~~l~ 335 (529)
..|.+.|.+.+.+. |++++++++|+++..++++. .|++ .++++++||.||-|-|.+. +++.+
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v--~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSI--TATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCce--EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 35566677777654 78999999999998754443 3443 3345799999999999864 44444
No 196
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=4.7e-08 Score=99.87 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=38.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
++||+|||||.+|++||..+++.|++|+|+|+++.+||.|..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 589999999999999999999999999999988889998743
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.84 E-value=1.8e-08 Score=104.14 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=40.5
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 277 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+.+.+++.|++++++++|++|..+++.. .|++.+|+.+.+|+||+|+|..
T Consensus 272 ~l~~~l~~~gv~i~~~~~V~~I~~~~~~~--~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 272 NLEEHIKQYPIDLMENQRAKKIETEDGLI--VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHhCCeEEcCCEEEEEEecCCeE--EEEECCCCEEEeCEEEECCCCC
Confidence 45566667789999999999998743332 5777788889999999999975
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=3.5e-08 Score=102.16 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.+.+++.|+++++++.|++|...++.+ .|++.+|+++.||.||+|||..
T Consensus 270 ~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~--~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 270 AALEEHVKEYDVDIMNLQRASKLEPAAGLI--EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecCCeE--EEEECCCCEEEcCEEEECCCCC
Confidence 345566677789999999999998743332 5777888889999999999984
No 199
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.83 E-value=3.3e-08 Score=100.73 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh
Q 009678 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
..+...+.+.+++. ++.++ ...|+++..++++.+.+|.+.+|..+.|+.||+|||.+.-..+
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~i 158 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKI 158 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCCE
Confidence 34556677777777 67775 4578888764466778999999988999999999999864443
No 200
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.83 E-value=1.6e-08 Score=93.78 Aligned_cols=253 Identities=18% Similarity=0.269 Sum_probs=126.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGI 130 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~ 130 (529)
...+.+-|||+|++||++|..|-|. |.+|.|+|.-...||............+-.|++-+...+..+.++++.+.-
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPS 99 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPS 99 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCcc
Confidence 3457899999999999999999886 579999999999999876543232233345666665555567777776542
Q ss_pred CCcccccccceeeecCCC-C-CCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhhhcCchhhhccCCcc
Q 009678 131 NDRLQWKEHSMIFAMPNK-P-GEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (529)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (529)
-+....+-.+..+.+... + ..-++....++ ..+.. ...+.+..+.+. .+...+. .--+.+++.+
T Consensus 100 Lei~naSvldEfy~~d~~dPn~s~cRli~k~g--------~rv~d-dg~~tl~~~~~~--ei~kL~~---t~EE~L~~~t 165 (587)
T COG4716 100 LEIPNASVLDEFYWLDKDDPNSSNCRLIHKRG--------RRVDD-DGSFTLNNKARK--EIIKLLM---TPEEKLDDLT 165 (587)
T ss_pred ccCCCcHHHHHHHhccCCCCCccceeeeeccc--------ccccc-ccccccChhhHH--HHHHHHc---CcHHhcCCcc
Confidence 111000000111100000 0 00011000000 00000 000111100000 0000000 0013456788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccC----CeeeeecCCCCccchHHHHHHHHH
Q 009678 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
+++|+.+. +...-|.-+.+.++.+.... |+..+..++..++....| +...+-.-++.++|+..|...|++
T Consensus 166 I~d~Fse~-----FF~sNFW~yW~tmFAFekWh-Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~ 239 (587)
T COG4716 166 IEDWFSED-----FFKSNFWYYWQTMFAFEKWH-SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKS 239 (587)
T ss_pred HHHhhhHh-----hhhhhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHH
Confidence 89988774 33333333334444444332 122222233333322222 112233334478999999999999
Q ss_pred cCcEEEecceeeEEEecC-CCCEE--EE-EEcCCcEEe---cCEEEEccC
Q 009678 285 LGGEVRLNSRVQKIELND-DGTVK--NF-LLTNGNVID---GDAYVFATP 327 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~-~~~~~--~v-~~~~G~~i~---ad~VI~a~~ 327 (529)
+||++..+++|+.|..+. .|+.+ .+ ...++++++ -|-|+++.+
T Consensus 240 H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNg 289 (587)
T COG4716 240 HGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNG 289 (587)
T ss_pred cCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecc
Confidence 999999999999998742 23210 12 245665554 344555443
No 201
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.83 E-value=1.1e-07 Score=96.66 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=37.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc-CCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~-~GG~~~~ 98 (529)
++||+|||||++|++||..|++.|++|+|+|+.+. +||.+-.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~ 45 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN 45 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence 68999999999999999999999999999999864 6887643
No 202
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.80 E-value=5.4e-08 Score=92.34 Aligned_cols=38 Identities=42% Similarity=0.579 Sum_probs=34.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG 94 (529)
+.+|+|||||++||++|..|.|.|++|+|+|++..+=|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 46899999999999999999999999999999776433
No 203
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.80 E-value=2.7e-07 Score=93.69 Aligned_cols=44 Identities=45% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
....+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34568999999999999999999999999999999999999764
No 204
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.79 E-value=1.5e-08 Score=102.31 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
.|.+.|.+.+. ...++++++|++|+.++++ + .|++.+|++++||.||.|.|.+.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCccH
Confidence 44555555543 2468899999999875554 3 57778888999999999999864
No 205
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.78 E-value=8.6e-08 Score=92.18 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~~~G 93 (529)
+|+||||||.+|..+|.+|++.| .+|+|||+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 6999999987644
No 206
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=1.7e-07 Score=95.99 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
++||+|||||++|++||..|++.|.+|+|+|+. ..||.+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 589999999999999999999999999999984 67887754
No 207
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.77 E-value=7.8e-08 Score=95.42 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...+|+|||||+|||++|++|.+.|++|+++||.+.+||-..-
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 4679999999999999999999999999999999999997654
No 208
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.75 E-value=2e-07 Score=95.59 Aligned_cols=41 Identities=39% Similarity=0.525 Sum_probs=35.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEec------cccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA------RDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa------~~~~GG~~ 96 (529)
.++|++|||||++|++||..|++.|.+|+|+|+ ....||.+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 468999999999999999999999999999998 24556655
No 209
>PRK07538 hypothetical protein; Provisional
Probab=98.75 E-value=4.1e-08 Score=99.03 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
+||+|||||++||++|..|+++|++|+|+|+...+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999997653
No 210
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.75 E-value=2.4e-07 Score=98.65 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
+..++|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999997643
No 211
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.75 E-value=3.6e-07 Score=100.86 Aligned_cols=42 Identities=40% Similarity=0.503 Sum_probs=39.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
..++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 467999999999999999999999999999999999999764
No 212
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.74 E-value=4.3e-07 Score=88.36 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=45.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcE-EecCEEEEccCHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVD 329 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~-i~ad~VI~a~~~~ 329 (529)
+.++.+...+.|+++|++|+++++|++|+. + +|++.+|++ |.++.||+|+|..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCc
Confidence 567888888899999999999999999974 3 377788874 9999999999864
No 213
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=2.4e-08 Score=101.61 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.+.+.++++|+++++++.|++|..+ ++.+ .+.+.+| ++.+|.||+|+|...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence 346677888899999999999999999874 3333 4666666 699999999998654
No 214
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=3.3e-07 Score=93.74 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=39.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
.++||+|||||.+|++||..|++.|++|+|+|+.+.+||.|-.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 4689999999999999999999999999999998888997743
No 215
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.74 E-value=3.6e-07 Score=93.74 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..+||+|||||.+|++||..|++.|++|+|+|+. .+||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4789999999999999999999999999999985 78998754
No 216
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1e-07 Score=90.31 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
|.+.+.+.+...|+++.. ..|.+++..++ ...|+|.+|+ ++||.||+|||...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcc
Confidence 334455566666777766 77888886433 3468999995 99999999999864
No 217
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.72 E-value=4.3e-07 Score=94.63 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCC--CCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
.+...+...+.+.+++|+.++.|+++..+++ |++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4444555566666789999999999997542 67888764 3554 578999999999864
No 218
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.71 E-value=2e-07 Score=93.02 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCc--EEecCEEEEccCHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVD 329 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~--~i~ad~VI~a~~~~ 329 (529)
..+.+.+.+.|++.|++++++++|++++..+++ + .+++.+|+ ++++|.|++|+|-.
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCCc
Confidence 567788888888888999999999999975554 3 57777775 68999999999853
No 219
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.70 E-value=1.2e-07 Score=89.21 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=48.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC---------------cEEecCEEEEccCH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---------------NVIDGDAYVFATPV 328 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G---------------~~i~ad~VI~a~~~ 328 (529)
...++..|-+.+++.|++|+-+-.+.++..++++.|.+|.|+|= -.+.|+.-|+|-|.
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 45788889999999999999999999999988999888887432 25789999998775
No 220
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=1.3e-07 Score=98.49 Aligned_cols=41 Identities=34% Similarity=0.574 Sum_probs=36.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
..+||+|||||++||+||..|+++|++|+|+|++ ..||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 3589999999999999999999999999999985 6777653
No 221
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.68 E-value=1.1e-06 Score=89.83 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...++|+|||||++||++|+.|+++|++|+|+|+.+.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999998753
No 222
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.68 E-value=2.4e-07 Score=84.15 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=46.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCC---CEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~---~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
...+...+.+.+...|+++.+|-+|..|..+.++ ..+.|....|++++++.||-|++.+.
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4567778888899999999999999999875442 23335555678999999999998753
No 223
>PTZ00058 glutathione reductase; Provisional
Probab=98.67 E-value=2.6e-07 Score=95.50 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...++||+|||||.+|++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 346789999999999999999999999999999985 78888754
No 224
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1e-06 Score=86.45 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHc-CcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh
Q 009678 278 IVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 278 l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
+.+.++.. +..|. ...|++|..+++.++.+|.|.+|..+.|+.||++||.+.-..+
T Consensus 106 mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 106 MKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 34444433 45563 4457788764444588999999999999999999998776555
No 225
>PRK10262 thioredoxin reductase; Provisional
Probab=98.64 E-value=2.2e-07 Score=90.32 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=37.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 36789999999999999999999999999999965 67887644
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.63 E-value=1.1e-06 Score=89.97 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...++|+|||||++||++|..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998764
No 227
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.63 E-value=5.5e-07 Score=97.50 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...+||+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4577999999999999999999999999999999988998764
No 228
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.62 E-value=9.9e-07 Score=80.84 Aligned_cols=64 Identities=25% Similarity=0.273 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcE--EecCEEEEccCHHHHhhhCCC
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPVDILKLQLPE 337 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~--i~ad~VI~a~~~~~~~~l~~~ 337 (529)
++-+.|.+.+++.|+.+..+.+|.+... .++++..|-|.++.. ++||.+|+|+|....+.|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 4567788888899999999999999998 467777888877753 689999999998877766543
No 229
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.62 E-value=1.9e-07 Score=97.15 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+..+|+|||||++||++|..|+++|++|+|+|++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 567899999999999999999999999999999964
No 230
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=6.1e-07 Score=98.70 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.++||+|||||++||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 568999999999999999999999999999999875
No 231
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.61 E-value=7.8e-07 Score=91.51 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (529)
.+.+.+.+.|+++|+++++++.|++|...++ .+ .+.+.+|+++.+|.||+|+|.....
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~-~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDD-KI-KVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC-eE-EEEECCCCEEEcCEEEEeeCCCCCc
Confidence 4567788889999999999999999986433 32 4667788889999999999875433
No 232
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.60 E-value=2e-06 Score=87.75 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=35.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG 94 (529)
+||+|||+|++|+++|+.|++.|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 233
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.60 E-value=1.5e-06 Score=92.20 Aligned_cols=43 Identities=35% Similarity=0.534 Sum_probs=39.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3578999999999999999999999999999999999999764
No 234
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.59 E-value=8.6e-06 Score=84.55 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=49.4
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEc---CCc--EEecCEEEEccCHHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDIL 331 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~---~G~--~i~ad~VI~a~~~~~~ 331 (529)
+..++..+++.+.++|++|+++++|++|..+ ++.+++|++. +|+ +|.|++||+|+|+|.-
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 7889999999999999999999999999974 5555556542 342 6899999999999863
No 235
>PRK06370 mercuric reductase; Validated
Probab=98.59 E-value=1.2e-06 Score=89.74 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
.++||+|||||++|++||..|++.|++|+|+|+. ..||.+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 4689999999999999999999999999999985 56776643
No 236
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.59 E-value=2e-06 Score=87.79 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=39.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 237
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.58 E-value=3.9e-07 Score=94.88 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=38.9
Q ss_pred HHHHHHHH-HcCcEEEecceeeEEEecCCCCEEEEEEcCC-c---EEecCEEEEccCHH
Q 009678 276 LPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVD 329 (529)
Q Consensus 276 ~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-~---~i~ad~VI~a~~~~ 329 (529)
..+...+. +.+++|++++.|++|..+ ++++++|++.++ + .+.++.||+|+|+.
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAI 254 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCC
Confidence 33444343 457999999999999984 667888887543 2 25799999999983
No 238
>PLN02546 glutathione reductase
Probab=98.56 E-value=2.7e-06 Score=88.08 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEec
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa 88 (529)
.++||+|||||.+|+.||..|++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 239
>PLN02507 glutathione reductase
Probab=98.56 E-value=2e-06 Score=88.37 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEec---------cccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA---------RDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa---------~~~~GG~~~ 97 (529)
..++||+|||||.+|+.||..+++.|.+|+|+|+ .+.+||.|-
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 4578999999999999999999999999999996 245777663
No 240
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.55 E-value=1.4e-06 Score=79.90 Aligned_cols=41 Identities=46% Similarity=0.729 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc--cCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~--~~GG~~ 96 (529)
.++||+|||+|++||.||.+|+.+|.+|+|+|... .+||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46899999999999999999999999999999864 366665
No 241
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.52 E-value=1.3e-06 Score=65.40 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=30.8
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+|+|||||+.|+-+|..|++.|.+|+|+|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998755
No 242
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=1.5e-06 Score=81.26 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=41.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
.++||+|||+|++|-.||...++.|++.+.+|++..+||.+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5899999999999999999999999999999999999999865
No 243
>PRK02106 choline dehydrogenase; Validated
Probab=98.50 E-value=1.6e-06 Score=90.93 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHH-CCCCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~-~g~~V~llEa~~~ 91 (529)
.++|+||||||.+|+.+|.+|++ .|++|+|||+...
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 56899999999999999999999 7999999999853
No 244
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.50 E-value=1e-05 Score=84.86 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
....+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999999999764
No 245
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.50 E-value=4.8e-06 Score=85.17 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=36.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
.||+|||||.+|+.||..|+++|.+|+|+|+. ..||.|..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 58999999999999999999999999999986 57887754
No 246
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.48 E-value=1.6e-06 Score=89.10 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=39.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..++||+|||||.|||.||..+++.|.+|+|+||....+|++..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 35789999999999999999999999999999999888876644
No 247
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.4e-06 Score=80.54 Aligned_cols=253 Identities=17% Similarity=0.156 Sum_probs=132.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccC------C--------------CCeeeeeeeeec
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG------D--------------GDWYETGLHIFF 115 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~------~--------------g~~~d~G~~~~~ 115 (529)
.++||+|+|-|+.-...+-.|+..|.+|+.+|+++.-||..++.+.. + .+-+|+-+.++.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 45999999999999999999999999999999999999998875410 0 111222222222
Q ss_pred CCcchHHHHHHHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcc--hhh
Q 009678 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPA 193 (529)
Q Consensus 116 ~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 193 (529)
. ...+..++-+.++...+.+......+.... +.+.. .|.. ..+ .+ ....+.+.++.+..+-+ ...
T Consensus 83 A-n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~--~k~~K------VP~t--~~E-a~-~s~lmgl~eKrr~~kFl~~V~n 149 (440)
T KOG1439|consen 83 A-NGELVKILIHTGVTRYLEFKSISGSFVYKK--GKIYK------VPAT--EAE-AL-TSPLMGLFEKRRVMKFLKFVLN 149 (440)
T ss_pred c-cchHHHHHHHhchhhheEEEeecceEEEEC--CeEEE------CCCC--HHH-Hh-cCCccchhHHHHHHHHHHHHhh
Confidence 1 122445555566655444443332222211 11111 1111 011 11 12333333333322211 111
Q ss_pred hhcCch-hhhc--cCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCC-CccccHHHHHHHHHHHhhh--ccC-Ceeeee
Q 009678 194 IIGGQA-YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFIN-PDELSMQCILIALNRFLQE--KHG-SKMAFL 266 (529)
Q Consensus 194 ~~~~~~-~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~ 266 (529)
+...++ -+.. ....++.+++...+.........-.. ...+.-+ .-+.+.......+..+... .+| +...++
T Consensus 150 ~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~--~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 150 YDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHA--IALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhccccccccccccchHHHHHHHhcccccceeeeeee--eEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 110010 0111 12236788888776554332211000 0001011 1122222222222222211 122 235666
Q ss_pred cCCCCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEc
Q 009678 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325 (529)
Q Consensus 267 ~g~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a 325 (529)
..| ...|.+++++...-.|+...+|.++.+|..++++++.+|+..++ ...++.||+-
T Consensus 228 ~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d 284 (440)
T KOG1439|consen 228 LYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD 284 (440)
T ss_pred ccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence 666 78999999998888899999999999999867788877765444 6677766543
No 248
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.42 E-value=3.4e-06 Score=82.23 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHH-cCcEEEecceeeEEEecCCCCEEEEEEcCC----cEEecCEEEEccCH
Q 009678 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 328 (529)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G----~~i~ad~VI~a~~~ 328 (529)
...+++.|.+.+++ .+++|..++.+.+|..+++..+.+|.+.+. ..+.|+.||+|||.
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 46778888888876 479999999999999855534547766432 46889999999975
No 249
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.36 E-value=2.2e-06 Score=92.89 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=46.0
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
....+.+.++++|+++++++.|++|..++++....|.+.+|+++.+|.||+|+|...
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 345677888999999999999999986433444567888999999999999998643
No 250
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.31 E-value=7.7e-06 Score=81.98 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=39.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+.+.++++|+++++++.|++|.. ++.+ .+++.+|+++.+|.||+|+|...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCCCh
Confidence 34555677999999999999975 3333 57788898999999999998743
No 251
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=2.3e-06 Score=79.03 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=42.6
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 52 ~~~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
......+|.+|||||-.|+++|++.++.|.+|.|+|..-.+||.|-.
T Consensus 15 a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 15 AADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 34457899999999999999999999999999999998899998855
No 252
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=4.1e-06 Score=81.73 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHC---CCCeEEEeccccCCcee
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADA---GHKPLLLEARDVLGGKI 96 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~---g~~V~llEa~~~~GG~~ 96 (529)
+++|+|||+|++|+++|.+|++. ...|.|+|.+...|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 46999999999999999999986 22499999998877644
No 253
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.26 E-value=1.4e-06 Score=94.57 Aligned_cols=43 Identities=40% Similarity=0.619 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
..+||+|||||+|||+||+.|++.|++|+|+|+++.+||....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999998754
No 254
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3e-05 Score=72.53 Aligned_cols=249 Identities=16% Similarity=0.186 Sum_probs=128.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeecc-------------CC------CCeeeeeeeeecC
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------GD------GDWYETGLHIFFG 116 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~-------------~~------g~~~d~G~~~~~~ 116 (529)
..+||+|+|.|+.-...+..|+.+|.+|+.+|+++.-|+..++.+. .. .+-+|+-+.++..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A 84 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFA 84 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcc
Confidence 4799999999999999999999999999999999999998877541 00 1222333333322
Q ss_pred CcchHHHHHHHcCCCCcccccccceeeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcc--hhhh
Q 009678 117 AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAI 194 (529)
Q Consensus 117 ~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 194 (529)
...+..++-+.|+...+.+.+....+.... +.+.. .|.. ..-.-....+++.++.+..+-+ ....
T Consensus 85 -~s~l~~iLi~t~v~~YLefk~i~~~~~~~~--~k~~k------VP~n----e~ei~~s~~lsL~eKr~vmrFl~~V~n~ 151 (434)
T COG5044 85 -NSELLKILIETGVTEYLEFKQISGSFLYRP--GKIYK------VPYN----EAEIFTSPLLSLFEKRRVMRFLKWVSNY 151 (434)
T ss_pred -cchHHHHHHHhChHhheeeeeccccEEecC--CcEEE------CCcc----HHhhhcCCCcchhhHHHHHHHHHHHHhH
Confidence 223555666667665554443332222211 11111 1110 0111112333433333222111 1111
Q ss_pred hcCchhhhcc-CCc-cHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhh--ccC-CeeeeecCC
Q 009678 195 IGGQAYVEAQ-DGL-TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG-SKMAFLDGN 269 (529)
Q Consensus 195 ~~~~~~~~~~-~~~-s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~~g~ 269 (529)
.....-..++ ... +++...+..++.......+...++.. .+ -+++.......+..++.. .+| +...++..|
T Consensus 152 ~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~---ld-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YG 227 (434)
T COG5044 152 AEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS---LD-LDIPAREALERILRYMRSFGDYGKSPYLYPRYG 227 (434)
T ss_pred HhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh---cc-ccCCchHHHHHHHHHHHhhcccCCCcceeeccC
Confidence 0000000011 111 22223333444333222122222211 12 223333333333333321 233 345666666
Q ss_pred CCccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEc
Q 009678 270 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 325 (529)
Q Consensus 270 ~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a 325 (529)
+..|.+++++...-.|+.+.+|+++.+|..... |.+|.... .+..|.+||..
T Consensus 228 -l~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~~~-~~~ka~KiI~~ 279 (434)
T COG5044 228 -LGELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDKGS-LTQKAGKIISS 279 (434)
T ss_pred -chhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeecCc-ceeecCcccCC
Confidence 899999999988888999999999999986433 34555443 37888888754
No 255
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.25 E-value=1.8e-05 Score=79.91 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~ 328 (529)
..+.+.+.+.|+++|++++++++|++|.. + .|.+.+|+++.+|.||+|+|.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCC
Confidence 35667778889999999999999999973 2 266788989999999999984
No 256
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.24 E-value=1.1e-06 Score=84.76 Aligned_cols=45 Identities=36% Similarity=0.592 Sum_probs=41.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEee
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~ 99 (529)
+...+++|||||++|++||..|++.|++|+|+|+++.+||++...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 456789999999999999999999999999999999999997653
No 257
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.24 E-value=1.4e-06 Score=95.39 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=40.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
+..++|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 4578999999999999999999999999999999999999864
No 258
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.23 E-value=1.8e-06 Score=87.18 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHH--CCCCeEEEeccccCCceeEe
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~--~g~~V~llEa~~~~GG~~~~ 98 (529)
.....+|+|||||++||+||+.|++ .|++|+|+|+.+.+||.++.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456799999999999999999997 69999999999999997754
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.22 E-value=1.6e-05 Score=80.71 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+...+.+.+++.|+++++++.|++|+. . .|++.+|+++.+|.||+|+|..
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCC
Confidence 4566788888999999999999999963 2 3566778889999999999864
No 260
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.21 E-value=3e-05 Score=79.46 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
++|++|||||.+|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 579999999999999999999999999999974
No 261
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=4.7e-05 Score=77.83 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=34.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
+|+|||||.+|++||..|++.|.+|+|+|+. ..||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence 8999999999999999999999999999986 56776643
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.16 E-value=4.7e-05 Score=77.60 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
++|++|||||.+|..||.. ..|.+|+|+|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5899999999999998754 46999999997 568888754
No 263
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.15 E-value=7e-05 Score=68.08 Aligned_cols=186 Identities=14% Similarity=0.062 Sum_probs=96.8
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCCchhhhHHHHHhhc
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 350 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (529)
.-++...|.+.|.++|+++. ..+|++++. + .+ -.+|.||.|+|.+. ..|..+..
T Consensus 150 ~~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--------~--~~---~~~DVivNCtGL~a-~~L~gDd~----------- 203 (342)
T KOG3923|consen 150 GPKYLPYLKKRLTENGVEFV-QRRVESLEE--------V--AR---PEYDVIVNCTGLGA-GKLAGDDD----------- 203 (342)
T ss_pred chhhhHHHHHHHHhcCcEEE-EeeeccHHH--------h--cc---CCCcEEEECCcccc-ccccCCcc-----------
Confidence 35777889999999999984 446777752 1 11 23899999999875 34444431
Q ss_pred CCCcCeEEEEEEecCCcccccCcccccCCcceeeeccccccccccCCCCceEEEEecCccccCCCChHHHHHHHHHHHHH
Q 009678 351 LVGVPVINIHIWFDRKLKNTYDHLLFSSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAK 430 (529)
Q Consensus 351 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 430 (529)
..|+.-..+..+.||-.++. +.|.+.. -..|...+|+....-....|......+-...|++.-..
T Consensus 204 --~yPiRGqVl~V~ApWvkhf~-----------~~D~~~t--y~iP~~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc~a 268 (342)
T KOG3923|consen 204 --LYPIRGQVLKVDAPWVKHFI-----------YRDFSRT--YIIPGTESVTLGGTKQEGNWNLEITDEDRRDILERCCA 268 (342)
T ss_pred --eeeccceEEEeeCCceeEEE-----------EecCCcc--EEecCCceEEEccccccCcccCcCChhhHHHHHHHHHH
Confidence 12333344555666532211 1122210 11233344443322223567544444556667777777
Q ss_pred hCCCCccccccccEEEEEEEeccCCcccccCCCCCCCC--CCCCCC-CCCeEEecccccCCCCCchHHHHHHHHHHHHHH
Q 009678 431 LFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR--PLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 507 (529)
Q Consensus 431 ~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~-~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i 507 (529)
+.|..... .++. ... +..|+-...+ +..++. -+++-++.++-+++ .++.-+.-+|..||+.+
T Consensus 269 L~P~l~~a-----~ii~-----E~v---GlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG--~G~Tl~wGtAlea~~Lv 333 (342)
T KOG3923|consen 269 LEPSLRHA-----EIIR-----EWV---GLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGG--NGFTLGWGTALEAAKLV 333 (342)
T ss_pred hCcccccc-----eehh-----hhh---cccCCCCceeeeeeeecCCCccceeEeeccCCC--CceecccchHHHHHHHH
Confidence 88874321 1221 111 2233211111 111222 23454566665554 36666777888888888
Q ss_pred HHHHh
Q 009678 508 VQDYV 512 (529)
Q Consensus 508 ~~~l~ 512 (529)
++.++
T Consensus 334 ~~~l~ 338 (342)
T KOG3923|consen 334 LDALG 338 (342)
T ss_pred HHHhh
Confidence 77654
No 264
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.13 E-value=7.1e-06 Score=83.77 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CCeEEEeccccC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVL 92 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g--~~V~llEa~~~~ 92 (529)
++|+|||||++|+++|..|++.+ .+|+|+|+++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 37999999999999999999875 589999997654
No 265
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.13 E-value=3.5e-06 Score=91.16 Aligned_cols=44 Identities=39% Similarity=0.589 Sum_probs=40.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998754
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.12 E-value=2.4e-05 Score=84.99 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.++++|+++++++.|++|.. ++.+..|++.+|+++.+|.||+|+|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 45556778999999999999974 344557888899999999999999864
No 267
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.11 E-value=2.1e-05 Score=78.79 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 283 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 283 ~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
.+.|+++++++.|++|..+ + + .|.+.+|+++.+|++|+|||...
T Consensus 69 ~~~~i~~~~g~~V~~id~~-~-~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRD-T-R--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECC-C-C--EEEECCCCEEEcCEEEEccCCCC
Confidence 3567899999999999863 3 3 36677888899999999999764
No 268
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.11 E-value=2.9e-06 Score=87.19 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=34.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
++|+|||||++||++|..|.+.|++|+++|+++.+||...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5899999999999999999999999999999999999875
No 269
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.09 E-value=3.1e-05 Score=75.26 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhC
Q 009678 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (529)
Q Consensus 277 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~ 335 (529)
.+.+.++++|+++++++.+.+++.+.+|.+..|.+.+|.++.||.||+.+|+.....++
T Consensus 260 ~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 260 FYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL 318 (478)
T ss_pred HHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc
Confidence 45677788999999999999999877899999999999999999999999986655544
No 270
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.09 E-value=3e-05 Score=77.27 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=39.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.+++.|++++++++|++|..++++ ..|++.+|+++.+|.||+|+|..
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCE--EEEEEcCCcEEECCEEEECcCCC
Confidence 445567779999999999999864332 35778889899999999999864
No 271
>PRK06370 mercuric reductase; Validated
Probab=98.08 E-value=5.6e-05 Score=77.49 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 35999999999999999999999999999997543
No 272
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=4.3e-06 Score=85.73 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
..+||+|||||++|++||..|++.|.+|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 458999999999999999999999999999999 68888764
No 273
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.03 E-value=0.0001 Score=73.13 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+...+.+.++++|+++++++.|++|.. + .|++.+|+++.+|.||+|+|..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCC
Confidence 4556777888899999999999999953 2 3667788899999999999854
No 274
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.02 E-value=8.8e-06 Score=81.06 Aligned_cols=43 Identities=35% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~-~~g~~V~llEa~~~~GG~~~~ 98 (529)
...+|+|||||+|||+||.+|+ +.|++|+|+|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4568999999999999999876 569999999999999998865
No 275
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.00 E-value=8.2e-06 Score=87.30 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=37.2
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCce
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~ 95 (529)
.+..++|+|||||+|||+||++|+++|++|+|+|+....|+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 346789999999999999999999999999999998765554
No 276
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.00 E-value=6.3e-06 Score=84.47 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
+||+|||||++|++||..|+++|++|+|+|+.. +||.+-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999865 777764
No 277
>PRK14694 putative mercuric reductase; Provisional
Probab=98.00 E-value=7e-06 Score=84.15 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (529)
..+...+.+.+++.|+++++++.|++|+.+ ++.+ .+.+.++ ++.+|.||+|+|......
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCCCCcC
Confidence 356677888888999999999999999864 3332 4556555 799999999998754333
No 278
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.99 E-value=9.9e-05 Score=75.73 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 589999999999999999999999999999753
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=97.97 E-value=0.00016 Score=73.61 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
++|++|||||.+|.+||.. ..|.+|+|+|+ +.+||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 3799999999999999876 35999999998 467887744
No 280
>PRK14727 putative mercuric reductase; Provisional
Probab=97.97 E-value=8.1e-06 Score=83.84 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=40.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
+.++|++|||||.+|+++|..|++.|.+|+|+|+.+.+||.+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 35789999999999999999999999999999998899998854
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.97 E-value=1.2e-05 Score=85.40 Aligned_cols=43 Identities=40% Similarity=0.612 Sum_probs=39.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...++|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999874
No 282
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.97 E-value=9.6e-06 Score=79.50 Aligned_cols=37 Identities=41% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
..||+|||||++|+.+|+.|+++|++|+|+|++....
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3599999999999999999999999999999876543
No 283
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.95 E-value=0.00012 Score=71.23 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=73.3
Q ss_pred CCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhhhccCCeeeeecCCCCccchHHHHHHHHH
Q 009678 205 DGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (529)
Q Consensus 205 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~ 284 (529)
...+.+++|++.|+...+.++++....+..++-+ .+++....+..+.. ..+..+... || ...+++.|.+ .
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~----a~~gl~sV~-GG-N~qI~~~ll~---~ 137 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG----ATGGLWSVE-GG-NWQIFEGLLE---A 137 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee----ccCCceEec-CC-HHHHHHHHHH---H
Confidence 3478899999999999999888888877776654 34444333222211 123344444 43 5777777765 4
Q ss_pred cCcEEEecceeeEE-EecCCCC-EEEEEEcC--C-cEEecCEEEEccCHHH
Q 009678 285 LGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDI 330 (529)
Q Consensus 285 ~G~~i~~~t~V~~I-~~~~~~~-~~~v~~~~--G-~~i~ad~VI~a~~~~~ 330 (529)
.+.++ +++.|++| ...+++. .+.|+..+ + ..-.+|.||+|+|...
T Consensus 138 S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 138 SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 57889 99999999 4434443 23444332 2 2344799999999853
No 284
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.95 E-value=8.5e-06 Score=80.46 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=34.2
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCCeEEEeccccCCce
Q 009678 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGK 95 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~~~GG~ 95 (529)
||+|||||++|+++|+.|++. |++|+|+|+...+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999998877763
No 285
>PRK13748 putative mercuric reductase; Provisional
Probab=97.94 E-value=8.6e-06 Score=85.73 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+...+.+.+++.|++|++++.|++|+.+ ++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCc
Confidence 356677788889999999999999999864 3333 4666666 799999999998654
No 286
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.94 E-value=0.00011 Score=75.20 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+.+.|+++|+++++++.|++|+.++++ + .+.+.+|+++.+|.||+|+|...
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecCCc
Confidence 345566789999999999999864343 3 46667888899999999998643
No 287
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.93 E-value=0.00011 Score=75.59 Aligned_cols=34 Identities=41% Similarity=0.538 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5999999999999999999999999999997543
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.93 E-value=3.4e-05 Score=83.78 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
++++|++++++++|++|..+ .+ .|++.+|+++.+|++|+|||...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~--~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTD--QK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECC--CC--EEEECCCcEeeCCEEEECCCCCc
Confidence 35678999999999999863 33 37778888899999999999753
No 289
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.92 E-value=0.00011 Score=75.07 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=37.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.+++.|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|..
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 44556677899999999999964 334445666555 79999999999864
No 290
>PTZ00367 squalene epoxidase; Provisional
Probab=97.92 E-value=1.1e-05 Score=83.44 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=45.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
..++||+|||||++|+++|+.|+++|++|+|+|+.... ...+ . .|. ...++-.+.++++|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~--~~~r---~------~G~----~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFS--KPDR---I------VGE----LLQPGGVNALKELGMEE 93 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccc--ccch---h------hhh----hcCHHHHHHHHHCCChh
Confidence 35789999999999999999999999999999986420 0000 0 111 12355678888999754
No 291
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.91 E-value=0.00011 Score=74.56 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=37.1
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+.+.+++.|+++++++.|++|.. ++.+ +.+.+|+++.+|.||+|+|..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCcc
Confidence 34455677999999999999975 3333 445678899999999999874
No 292
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00083 Score=63.83 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=80.7
Q ss_pred hhccCCccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHhh--hccCC-eeeeecCCCCccchHH
Q 009678 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGS-KMAFLDGNPPERLCLP 277 (529)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~~g~~~~~l~~~ 277 (529)
..+....++.+||+..++...+..-.+..+ ...+.++......+.....|+. +.+|. .+.|+-.| -+.|.++
T Consensus 217 ~~~~~e~~F~EyL~~~rltp~lqs~vl~aI----aM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQc 291 (547)
T KOG4405|consen 217 YVEFRERPFSEYLKTMRLTPKLQSIVLHAI----AMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQC 291 (547)
T ss_pred HHHhhcCcHHHHHHhcCCChhhHHHHHHHH----HhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchHH
Confidence 344566799999999998877654433333 2245555666666665665553 23443 34555544 6799999
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCC-EEEEEEcCCcEEecCEEEEcc
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGT-VKNFLLTNGNVIDGDAYVFAT 326 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~-~~~v~~~~G~~i~ad~VI~a~ 326 (529)
+.+.+.-.|+-..++.+|+.|..+++.. +..+....|+.+.++++|+.-
T Consensus 292 FCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 292 FCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 9999999999899999999998743321 111223567778888888764
No 293
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.84 E-value=1.9e-05 Score=80.75 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
..+.+.+.+.|+++|+++++++.|++|..++++. ..|++.+|+++.+|.||+|+|...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCc
Confidence 4566788888999999999999999998644443 346666787899999999998643
No 294
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.83 E-value=2.8e-05 Score=79.74 Aligned_cols=42 Identities=38% Similarity=0.566 Sum_probs=39.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999998764
No 295
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.81 E-value=2.2e-05 Score=77.56 Aligned_cols=37 Identities=38% Similarity=0.366 Sum_probs=33.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG 94 (529)
.||+|||||++|+.||+.|+++|++|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3899999999999999999999999999998876543
No 296
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.81 E-value=0.00023 Score=72.90 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHH---CCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLAD---AGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~---~g~~V~llEa~~~~ 92 (529)
..+++|||||..|+-.|..+.. .|.+|+|+|+.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 3589999999999999976654 48999999987664
No 297
>PRK07846 mycothione reductase; Reviewed
Probab=97.81 E-value=0.00028 Score=71.92 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=36.5
Q ss_pred HcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhh
Q 009678 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (529)
Q Consensus 284 ~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~ 333 (529)
+.|+++++++.|++|+.+ ++.+ .+++.+|+++.+|.||+|+|...-..
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCcc
Confidence 346899999999999864 3333 46777888899999999998754333
No 298
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.80 E-value=2.2e-05 Score=73.69 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+...||+|||||++|.+.|+.|+|.|.+|+|+|+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 457789999999999999999999999999999985
No 299
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.79 E-value=3.3e-05 Score=77.34 Aligned_cols=43 Identities=37% Similarity=0.493 Sum_probs=40.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...+|+|||||++||+||+.|++.|++|+++|+.+..||.+.-
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3489999999999999999999999999999999999998754
No 300
>PLN02507 glutathione reductase
Probab=97.79 E-value=0.00022 Score=73.44 Aligned_cols=51 Identities=14% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+.+.+++.|++|++++.|++|+.++++ + .+.+.+|+++.+|.||+|+|...
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECCCcEEEcCEEEEeecCCC
Confidence 344566779999999999999864343 3 46677888899999999998643
No 301
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.79 E-value=0.00023 Score=72.59 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=38.7
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 279 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 279 ~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
.+.++++|+++++++.|++|..++++. .|++.+|+++.+|.||+|+|..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDGL--KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeE--EEEEcCCcEeecCEEEEeeCCC
Confidence 445567799999999999998644442 4666778889999999999864
No 302
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.78 E-value=2.7e-05 Score=70.11 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
||+|||||++|++||..|++.+.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999977543
No 303
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=0.00034 Score=71.55 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+++|||||.+|+.+|..|.+.|.+|+|+|+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 489999999999999999999999999999753
No 304
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.78 E-value=0.00018 Score=70.22 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=46.0
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC-cEEecCEEEEccCHHHHh
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILK 332 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G-~~i~ad~VI~a~~~~~~~ 332 (529)
...+++.|...+++.||+|+++++|++|. +++ ..+.+.++ +.++||+||+|||.....
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEADAVVLALGGASWS 143 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEecCEEEEcCCCcccc
Confidence 56788999999999999999999999993 333 25766443 469999999999875433
No 305
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.76 E-value=0.00021 Score=72.26 Aligned_cols=39 Identities=49% Similarity=0.712 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCce
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~ 95 (529)
..+++|||+|..|+.+|..|+++|++|+++|+.++++|.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 579999999999999999999999999999998776663
No 306
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=5.4e-05 Score=74.58 Aligned_cols=43 Identities=37% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~ 98 (529)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 3569999999999999999999999999999999999987643
No 307
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.74 E-value=3.4e-05 Score=81.21 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc-ccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~-~~~GG~~~~ 98 (529)
.++||+|||||.+|..||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 3689999999999999999999999999999974 468998755
No 308
>PTZ00058 glutathione reductase; Provisional
Probab=97.72 E-value=0.00038 Score=72.28 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4589999999999999999999999999999753
No 309
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.72 E-value=3.9e-05 Score=81.04 Aligned_cols=43 Identities=37% Similarity=0.559 Sum_probs=39.9
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
...++|+|||+|++||+||-.|-|.|+.|+|+|+.+++||-..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 3567999999999999999999999999999999999999764
No 310
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.68 E-value=0.0003 Score=73.71 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=49.5
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 35788889988888899999999999999755788888864 3564 478999999998754
No 311
>PRK14727 putative mercuric reductase; Provisional
Probab=97.67 E-value=0.00058 Score=70.23 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=38.7
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~ 331 (529)
+.+.+++.|+++++++.|++|..++++ + .+.+.+| ++.+|.||+|+|...-
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDDNG-F-VLTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeCCE-E-EEEEcCC-eEEeCEEEEccCCCCC
Confidence 445567789999999999999864333 2 4666666 6999999999987643
No 312
>PRK13984 putative oxidoreductase; Provisional
Probab=97.64 E-value=8.5e-05 Score=78.81 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeE
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~ 97 (529)
....+|+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567999999999999999999999999999999999999764
No 313
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.63 E-value=0.00059 Score=70.14 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 589999999999999999999999999999753
No 314
>PRK14694 putative mercuric reductase; Provisional
Probab=97.62 E-value=0.00085 Score=68.88 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+++|||+|.+|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999863
No 315
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.00014 Score=68.50 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC--CCCeEEEeccccCCceeEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAA 98 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~~~GG~~~~ 98 (529)
.+..|+|||+|+||+.+|++|+++ +.+|.|+|+.+.+.|-.+-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 445999999999999999999995 6899999999999997754
No 316
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00017 Score=66.90 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=42.8
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEec-CCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCC
Q 009678 274 LCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (529)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~-~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~ 337 (529)
|...|.++.++..+++..-.++++++.. ..+....|++.+|-.+.++.||++||+.--..-+|.
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCc
Confidence 3344555555556666666677777763 123345799999989999999999998543333444
No 317
>PLN02546 glutathione reductase
Probab=97.51 E-value=0.001 Score=69.17 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=38.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+.+.++++|+++++++.|++|..++++.+ .+.+.+++...+|.||+|+|...
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeecccc
Confidence 44556678999999999999986444543 46666664344899999998654
No 318
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.51 E-value=0.0014 Score=69.32 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4899999999999999999999999999998644
No 319
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.51 E-value=9.9e-05 Score=80.09 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~~ 91 (529)
++|+|||||++||++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999764
No 320
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00083 Score=58.53 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhhCCC
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l~~~ 337 (529)
.|++.|.++.++.|.+|.+.+ |.++..+. +...+.|..+ .+.||.||+|||+..-+.-+|.
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss--kpF~l~td~~-~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSS--KPFKLWTDAR-PVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccC--CCeEEEecCC-ceeeeeEEEecccceeeeecCC
Confidence 455667777788888997665 89998643 3335667655 7999999999998764444543
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.46 E-value=0.0013 Score=67.21 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=35.6
Q ss_pred cCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHh
Q 009678 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (529)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~ 332 (529)
.|+++++++.|++|+.++++ + .+++.+|+++.+|.||+|+|...-.
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDG-V-TLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCe-E-EEEEcCCCEEEcCEEEEeeccCcCC
Confidence 46899999999999864333 3 4667778889999999999865433
No 322
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.46 E-value=0.0012 Score=67.80 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+++|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999997643
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.44 E-value=0.00062 Score=66.23 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=26.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHCC-CCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~~ 91 (529)
.+|+++||.|+++|+.|..|...+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 469999999999999999999875 89999998765
No 324
>PRK13748 putative mercuric reductase; Provisional
Probab=97.41 E-value=0.0013 Score=69.23 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+++|||||.+|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 358999999999999999999999999999964
No 325
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.35 E-value=4.7e-05 Score=65.44 Aligned_cols=41 Identities=39% Similarity=0.464 Sum_probs=35.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC--CCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~~~GG~~ 96 (529)
...||+|||+|-+||+|||.++++ ..+|.|+|+.-.+||-.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 356999999999999999999965 67999999988877754
No 326
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0017 Score=63.13 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+..+||||||||-||.-||...++.|.+.+|+-.+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 5789999999999999999999999999888876543
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.32 E-value=0.0019 Score=66.34 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCC---cEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G---~~i~ad~VI~a~~~~~ 330 (529)
+.+.|+++|++|++++.+++|...+++ + .|+..+| +++.+|.||+|+|...
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIEAK-V-KVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCe-E-EEEEecCCcceEEEeCEEEEEecCCc
Confidence 445567789999999999999864333 2 3554444 3799999999998643
No 328
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00022 Score=73.97 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=33.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..++|+||||+|.+|...|.+|++.|.+|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 468999999999999999999998899999999963
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.23 E-value=0.0026 Score=65.26 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+++|||+|.+|+-.|..|++.|.+|+|+|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3589999999999999999999999999999764
No 330
>PLN02785 Protein HOTHEAD
Probab=97.05 E-value=0.00074 Score=70.63 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 53 ~~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.....+|+||||||.+|+.+|.+|++ +.+|+|||+..
T Consensus 51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 51 GGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 34567999999999999999999999 58999999964
No 331
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.97 E-value=0.0066 Score=59.14 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCC--CeEEEecc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~--~V~llEa~ 89 (529)
.....+|+|||||.++..++..|.+++. +|+++=++
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 3467799999999999999999999864 67777553
No 332
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.82 E-value=0.0041 Score=64.10 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
|.+.+++.|+++++++.+++|.. .+.+.++..++|..+.||.||.|++..
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccc
Confidence 56677888999999999999985 556678999999999999999999864
No 333
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.64 E-value=0.0036 Score=62.89 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG 94 (529)
-..+++|||||+.|+-.|..+++.|.+|+|+|+.+++--
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 345899999999999999999999999999999887544
No 334
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0019 Score=59.85 Aligned_cols=36 Identities=36% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
...|-|||||.+|.-|||.|+++|..|.|+|-+..-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 346899999999999999999999999999988653
No 335
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.002 Score=59.80 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=43.9
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEE---EcCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~---~~~G~--~i~ad~VI~a~~~~~ 330 (529)
-+.+++.+.+.++++|+++...+.+++|++.++++. .|. |..++ +-.+|.|++|+|-..
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcccc
Confidence 467788888999999999999988899988777762 333 22232 346899999998643
No 336
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.40 E-value=0.0041 Score=61.99 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHH
Q 009678 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (529)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~ 329 (529)
+++.|+++++++.|++|..+ + +. |++ +|+++.+|+||+|||..
T Consensus 68 ~~~~gv~~~~~~~V~~id~~-~-~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAE-A-QV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHhCCCEEECCCEEEEEECC-C-CE--EEE-CCeEEeCCEEEECCCCC
Confidence 35568999999999999863 3 32 445 46689999999999974
No 337
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.15 E-value=0.0057 Score=52.35 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
+|+|||||-.|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998764
No 338
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.06 E-value=0.0076 Score=52.79 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=27.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
+|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999853
No 339
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.93 E-value=0.0078 Score=61.47 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-CCCeEEEeccccC
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~-g~~V~llEa~~~~ 92 (529)
...++|.||||||-||...|..|++. ..+|+||||....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45789999999999999999999987 6799999997553
No 340
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.011 Score=60.88 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+|+|||+|.+|+++|..|+++|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999765
No 341
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.74 E-value=0.015 Score=63.75 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
..+++|||||..|+-+|..|++.|.+|+|+|..+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 358999999999999999999999999999987753
No 342
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.73 E-value=0.0099 Score=52.26 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
++|.|||.|..||..|..|++.|++|+-+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998653
No 343
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.68 E-value=0.021 Score=58.61 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
..+|+|||||.+|+..|..|++.|.+|+|+|+++++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4599999999999999999999999999999987654
No 344
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.57 E-value=0.014 Score=55.99 Aligned_cols=36 Identities=42% Similarity=0.567 Sum_probs=31.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHC----CCCeEEEeccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARD 90 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~----g~~V~llEa~~ 90 (529)
+..+||+|||||+.|++-|..|... ..+|.|+|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 3589999999999999999999865 46999999873
No 345
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.014 Score=59.80 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+|+|||.|.+|+++|+.|+++|++|++.|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999998754
No 346
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.55 E-value=0.034 Score=56.72 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34699999999999999999999999999998753
No 347
>PRK12831 putative oxidoreductase; Provisional
Probab=95.54 E-value=0.033 Score=57.01 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||||.+|+-+|..|.+.|.+|+|+++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45699999999999999999999999999998653
No 348
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.52 E-value=0.016 Score=49.22 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 60 VvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
|+|||+|..|...|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998764
No 349
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.46 E-value=0.022 Score=57.98 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 348999999999999999999999999999987653
No 350
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.024 Score=54.67 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999864
No 351
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.23 E-value=0.012 Score=52.89 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=28.1
Q ss_pred eEEEECCChHHHHHHHHHHHC--CCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~~ 91 (529)
+.+||||||+|.+||-.|+.. ..+|+|+-+.+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999975 568999987654
No 352
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.14 E-value=0.029 Score=57.58 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=33.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 589999999999999999999999999999987653
No 353
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.13 E-value=0.059 Score=51.86 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHHHhhh
Q 009678 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (529)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~~~~l 334 (529)
-|.+.-.+.+++.||.++-|..|.++.... +.+ -+.+++|.+++.|.||+|+|-..-..|
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEEecCCCeeeeeeEEEEecCCCchhh
Confidence 344455667778899999999999998743 333 378899999999999999986544444
No 354
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.03 Score=50.95 Aligned_cols=66 Identities=30% Similarity=0.512 Sum_probs=44.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHHHHHHHcCCCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 132 (529)
++++|||+|-.|.+.|..|.+.|++|+++|+....==...+ -+.+.+.+.+... -.+.+++.|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~--------~~~~~~~v~gd~t-~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA--------DELDTHVVIGDAT-DEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh--------hhcceEEEEecCC-CHHHHHhcCCCc
Confidence 47999999999999999999999999999986541111000 0133344432222 246778888765
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.027 Score=54.17 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
++|.|||+|+.||++|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 356
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.01 E-value=0.035 Score=56.64 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=33.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
.+++|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 589999999999999999999999999999987654
No 357
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.93 E-value=0.032 Score=50.06 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||+|.+++-+|..|++.|.+|+++=+++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45799999999999999999999999999997754
No 358
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.91 E-value=0.56 Score=45.57 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~~ 91 (529)
...|++.||-|+.-|+-|..|...+ .+++.||+...
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 5679999999999999999999874 78999998754
No 359
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.91 E-value=0.52 Score=46.01 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 52 ~~~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+...++++|||+|+|.+|.+....|-..-++|+|+.-++.
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 3456788999999999999999988887899999998775
No 360
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.043 Score=52.64 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
-..|+|||+|..|...|..++..|++|+++|...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999764
No 361
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.89 E-value=0.041 Score=56.46 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 35899999999999999999999999999998654
No 362
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.81 E-value=0.038 Score=56.24 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~G 93 (529)
.+++|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 589999999999999999999999999999987654
No 363
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.80 E-value=0.04 Score=56.61 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5899999999999999999999999999998654
No 364
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.68 E-value=0.053 Score=46.96 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
....|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4579999999999999999999999999999974
No 365
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.68 E-value=0.046 Score=56.18 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5899999999999999999999999999997543
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.044 Score=52.19 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+|+|||+|..|.+.|..|++.|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 47999999999999999999999999999975
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.045 Score=52.16 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|+|||+|..|...|..|++.|++|+++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999764
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.05 Score=51.66 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999997643
No 369
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.52 E-value=0.09 Score=57.45 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCC-eEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~-V~llEa~ 89 (529)
...+|+|||||.+|+-+|..|.+.|.+ |+|++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 456899999999999999999999987 9999875
No 370
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.44 E-value=0.06 Score=51.71 Aligned_cols=33 Identities=33% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999885
No 371
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.44 E-value=0.09 Score=43.60 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCC-eEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~-V~llEa~ 89 (529)
...+++|||+|-+|-++++.|++.|.+ |+|+-+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999999999999999999986 9999864
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.43 E-value=0.066 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..++|+|||+|..|.+.|..|++.|++|+++.++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3468999999999999999999999999999875
No 373
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.055 Score=55.38 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.++|+|||+|-+|+++|..|++.|++|+++|...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999864
No 374
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.36 E-value=0.073 Score=45.81 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGi-aGlsaA~~L~~~g~~V~llEa~ 89 (529)
..++|+|||+|- +|..+|.+|.+.|.+|+++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 567999999995 6999999999999999999864
No 375
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.34 E-value=0.069 Score=47.78 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+|+|||||-+|...+..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 459999999999999999999999999999764
No 376
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.19 E-value=0.062 Score=51.37 Aligned_cols=32 Identities=38% Similarity=0.336 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+|.|||+|..|...|..|++.|++|+++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999999999999975
No 377
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.16 E-value=0.064 Score=49.70 Aligned_cols=45 Identities=31% Similarity=0.570 Sum_probs=37.4
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc--------ccCCceeEe
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR--------DVLGGKIAA 98 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~--------~~~GG~~~~ 98 (529)
.-...+|+|||+|.+|..+|.-+.-.|.+|+|+|.+ +..+|+..+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~ 217 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHT 217 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEE
Confidence 346679999999999999999999999999999987 235666544
No 378
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.13 E-value=0.067 Score=55.63 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+|+|||||.+|+-+|..|++.|.+|+|+|..+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4699999999999999999999999999998643
No 379
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.02 E-value=0.15 Score=53.67 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=48.6
Q ss_pred CccchHHHHHHHHHcCcEEEecceeeEEEecCCCCEEEEEE---cCCc--EEecCEEEEccCHHH
Q 009678 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (529)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~---~~G~--~i~ad~VI~a~~~~~ 330 (529)
...++..|.+.+++.|++|+++++|++|.. ++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 356888999999889999999999999997 4778888764 3564 578999999998753
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.97 E-value=0.056 Score=42.41 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+..+|+|||||-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4569999999999999999999999999999876
No 381
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.075 Score=50.77 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999754
No 382
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.79 E-value=0.084 Score=50.80 Aligned_cols=31 Identities=42% Similarity=0.519 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+|+|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999974
No 383
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.76 E-value=0.065 Score=49.79 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHC-C-CCeEEEecccc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADA-G-HKPLLLEARDV 91 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~-g-~~V~llEa~~~ 91 (529)
+..+++|+|||||.+|++.|..+.++ | -+|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45789999999999999999999886 4 48999998664
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.70 E-value=0.091 Score=50.60 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEec
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa 88 (529)
++|+|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999986
No 385
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.69 E-value=0.099 Score=46.60 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|..|..+|..|++.|. +|+|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999999999999999999998 699999863
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.69 E-value=0.089 Score=50.00 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999753
No 387
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.69 E-value=0.095 Score=50.38 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCC--CCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g--~~V~llEa~~ 90 (529)
++|.|||+|..|.++|+.|+..| .+|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999999998 4899999754
No 388
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.64 E-value=0.093 Score=51.45 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
++|.|||+|..|.+.|..|++.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999874
No 389
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.64 E-value=0.12 Score=46.20 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4569999999999999999999999999999753
No 390
>PRK10262 thioredoxin reductase; Provisional
Probab=93.60 E-value=0.1 Score=50.60 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+|+|||+|.+|+-+|..|++.+.+|+++++++
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999864
No 391
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.58 E-value=0.1 Score=49.95 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
++|.|||+|..|..+|+.|+..|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999876 89999974
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.55 E-value=0.13 Score=43.83 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEe
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llE 87 (529)
...+|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45689999999999999999999999999995
No 393
>PRK04148 hypothetical protein; Provisional
Probab=93.52 E-value=0.083 Score=43.14 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
..++++||.| .|.+.|..|++.|++|+.+|-+..
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3589999999 999999999999999999997654
No 394
>PRK06116 glutathione reductase; Validated
Probab=93.46 E-value=0.11 Score=53.10 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
..+|+|||+|.+|+-.|..|++.|.+|+++++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999987654
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.44 E-value=0.11 Score=54.24 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||||.+|+-+|..|++.+.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998653
No 396
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.42 E-value=0.12 Score=50.95 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCC-eEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~-V~llEa~ 89 (529)
..+|+|||+|..|+-+|..|.+.|.+ |+|++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 45899999999999999999999987 9999864
No 397
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.39 E-value=0.11 Score=54.70 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
...+|+|||||.+|+-.|..|++.|.+|+|+++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 346999999999999999999999999999998765
No 398
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.25 E-value=0.12 Score=52.75 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 48999999999999999999999999999987654
No 399
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.16 E-value=0.2 Score=55.74 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||||.+|+-||..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45699999999999999999999999999998764
No 400
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.11 E-value=0.15 Score=49.20 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
+.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999764
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.04 E-value=0.14 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+|||+|.+|+.+|..|.+.|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999975
No 402
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.99 E-value=0.13 Score=42.73 Aligned_cols=35 Identities=40% Similarity=0.448 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-CeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~ 91 (529)
+.+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 7999997543
No 403
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.93 E-value=0.12 Score=52.09 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.6
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+|.|||.|..|+..|..|++.|++|+++|.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 404
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.92 E-value=0.15 Score=48.84 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999753
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.91 E-value=0.13 Score=51.73 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
++|.|||.|..|+..|..|++.|++|+.+|.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999997543
No 406
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.89 E-value=0.15 Score=48.74 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 3469999999999999999999999999999875
No 407
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.85 E-value=0.17 Score=52.46 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999863
No 408
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.79 E-value=0.17 Score=49.31 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.++|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999999853
No 409
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.74 E-value=0.17 Score=48.89 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999643
No 410
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.71 E-value=0.13 Score=45.30 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
......|.|||||..|.-.|...+..|++|.|++++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34567899999999999999999999999999998643
No 411
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.57 E-value=0.23 Score=41.45 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.3
Q ss_pred CeEEEECC-ChHHHHHHHHHHHCCC--CeEEEeccc
Q 009678 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGa-GiaGlsaA~~L~~~g~--~V~llEa~~ 90 (529)
.+|+|||+ |-.|.+.|+.|...+. +++|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999864 799999863
No 412
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.54 E-value=0.17 Score=49.52 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCC-CCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~ 89 (529)
.+|+|||+|-.|.++|+.|+++| .+|+|.++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 58999999999999999999998 899999987
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.41 E-value=0.16 Score=51.99 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 35899999999999999999999999999997543
No 414
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.37 E-value=0.19 Score=48.96 Aligned_cols=31 Identities=29% Similarity=0.245 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+|.|||+|..|.+.|..|++.|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999874
No 415
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.36 E-value=0.22 Score=47.79 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~--~V~llEa~~ 90 (529)
++.+|+|||+|-.|.++|+.|+..|. +++|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998865 799999754
No 416
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.26 E-value=0.23 Score=45.21 Aligned_cols=34 Identities=35% Similarity=0.672 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC---CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~---~V~llEa~ 89 (529)
...+|+|+|+|-+|..+|..|.+.|. +|.|+++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45689999999999999999999986 49999986
No 417
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.24 E-value=0.18 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..+|+|+|.|.+|+++|..|++.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3479999999999999999999999999999764
No 418
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.23 E-value=0.22 Score=46.33 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~ 91 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45689999999999999999999995 8999997654
No 419
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.17 E-value=0.21 Score=51.38 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
-.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999864
No 420
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.17 E-value=0.21 Score=48.57 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
++|.|||+|..|...|..|++.|++|+++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 47999999999999999999999999999875
No 421
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.13 Score=48.38 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=29.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+.+||+|||||-+|+-||..|+---..|+|||=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 5689999999999999999998655589999953
No 422
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.12 E-value=0.17 Score=50.62 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccC
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~ 92 (529)
.++|+|+|-|.+|++||..|.++|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999976654
No 423
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.09 E-value=0.12 Score=51.05 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=42.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-------------CCeEEEeccccCCceeEeeccCCCCeeeeeeeeecCCcchHH
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQ 122 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-------------~~V~llEa~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~ 122 (529)
...+++|||||.+|.-.|-+|+.+- .+|+|+|+.+++--.... .......
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----------------~l~~~a~ 216 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----------------KLSKYAE 216 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----------------HHHHHHH
Confidence 3458999999999999999998631 288999987764332211 1123466
Q ss_pred HHHHHcCCCC
Q 009678 123 NLFGELGIND 132 (529)
Q Consensus 123 ~l~~~lg~~~ 132 (529)
+.++++|++.
T Consensus 217 ~~L~~~GV~v 226 (405)
T COG1252 217 RALEKLGVEV 226 (405)
T ss_pred HHHHHCCCEE
Confidence 7888888764
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.04 E-value=0.23 Score=42.69 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.7
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||-|..|...|.+|.+.|++|.++++..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 589999999999999999999999999999753
No 425
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.98 E-value=0.23 Score=50.87 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
...+|+|||||.+|+-+|..|.+.|. +|+|++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45699999999999999999999987 89999864
No 426
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.96 E-value=0.22 Score=50.95 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+|||+|.+|+.|+..+...|.+|+++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4679999999999999999999999999999875
No 427
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.88 E-value=0.21 Score=49.63 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.3
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
+|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998653
No 428
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.84 E-value=0.36 Score=36.33 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHC-CCCeEEEec
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~-g~~V~llEa 88 (529)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 678999987
No 429
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.84 E-value=0.45 Score=48.95 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCCCCeEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Q 009678 472 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 512 (529)
Q Consensus 472 ~~~~~~l~~aG~~~~~~~~~~~~gA~~Sg~~aA~~i~~~l~ 512 (529)
++..++||.+||-+.+. ..+..|+..|+.||..|...|.
T Consensus 427 ~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 427 QTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred cCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 34568999999988642 3577899999999999988874
No 430
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.82 E-value=0.2 Score=51.64 Aligned_cols=35 Identities=40% Similarity=0.509 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
-.+|.|||+|..|...|..|++.|++|+++|.+..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997653
No 431
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.82 E-value=0.21 Score=51.58 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 432
>PLN02256 arogenate dehydrogenase
Probab=91.79 E-value=0.55 Score=44.95 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|.|||.|..|-+.|..|.+.|++|++++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 5568999999999999999999999999998865
No 433
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.78 E-value=0.22 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...|+|+|+|-+|+++|..|++.|++|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999653
No 434
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.77 E-value=0.22 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHHC--CCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~--g~~V~llEa~~ 90 (529)
++|+|||+|..|+..|..|++. |++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5799999999999999999998 47899999754
No 435
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.66 E-value=0.24 Score=51.08 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999999999999999999999999999964
No 436
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.61 E-value=0.26 Score=50.26 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
...|+|+|.|-+|+++|..|+++|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35899999999999999999999999999997544
No 437
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.61 E-value=0.25 Score=50.08 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHH--------------CCCCeEEEeccccCC
Q 009678 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVLG 93 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~--------------~g~~V~llEa~~~~G 93 (529)
.+|+|||||.+|+-.|..|++ .+.+|+|+|+.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 489999999999999999975 368899999876643
No 438
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.46 E-value=0.29 Score=46.37 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
...+|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999997 79999875
No 439
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.43 E-value=0.22 Score=53.86 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
..|+|||||..|...|..+++.|++|+|+|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998643
No 440
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.41 E-value=0.25 Score=50.69 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHH-HHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGls-aA~~L~~~g~~V~llEa~~ 90 (529)
+..+|.|||.|-+|++ +|..|.++|++|++.|.+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4568999999999999 5999999999999999754
No 441
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.37 E-value=0.25 Score=46.77 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
-..|.|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 358999999999999999999988999999986
No 442
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.36 E-value=0.31 Score=39.08 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 60 VvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
|+|||.|-.|...|..|.+.+.+|+++|.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999997779999998754
No 443
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.33 E-value=0.24 Score=47.38 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=28.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
++|.|+|+|..|...|+.|++.|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999997777776543
No 444
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.31 E-value=0.32 Score=43.80 Aligned_cols=35 Identities=40% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46689999999999999999999998 599999753
No 445
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.24 E-value=0.36 Score=43.11 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+.|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999999999999999999999999999865
No 446
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.20 E-value=0.24 Score=53.43 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.-..|.|||||..|...|..++..|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998643
No 447
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.18 E-value=0.35 Score=46.71 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCC-CeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~ 91 (529)
..+|+|||+|-.|.++|+.|+..|+ +|+|+|....
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999985 8999997554
No 448
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.17 E-value=0.32 Score=46.81 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
.+|+|||+|..|...|+.|+..|. +|+|+|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999865 999999743
No 449
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.16 E-value=0.3 Score=47.42 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45689999999999999999999998 899999864
No 450
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.16 E-value=0.32 Score=47.33 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|-.|..+|..|++.|. +|+|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999998 899999853
No 451
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.13 E-value=0.28 Score=46.48 Aligned_cols=31 Identities=35% Similarity=0.392 Sum_probs=29.1
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+|.|||.|..|.+.|..|++.|++|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999875
No 452
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.91 E-value=0.38 Score=41.83 Aligned_cols=32 Identities=41% Similarity=0.380 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999864
No 453
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=90.87 E-value=0.7 Score=47.64 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CCeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~~ 91 (529)
...+|+|||||..|+-+|..+.+.| .+|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4569999999999999998888886 47999987544
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.84 E-value=0.39 Score=45.85 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+|+|||.|.+|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999998864
No 455
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.76 E-value=0.37 Score=43.79 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.5
Q ss_pred CeEEEEC-CChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIG-aGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
++|.||| +|..|.+.|..|++.|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998754
No 456
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.75 E-value=0.14 Score=48.88 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=36.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccccCCcee
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~~GG~~ 96 (529)
-..+.+|||||+.||-.+-.-.+.|.+|+++|..+.+||.+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 34589999999999999999999999999999998888753
No 457
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.74 E-value=0.36 Score=46.41 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHHCC--CCeEEEeccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g--~~V~llEa~~ 90 (529)
+|+|||+|-.|.++|+.|+..| .+|+|+|...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999998 4799999854
No 458
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.71 E-value=0.33 Score=49.89 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...|+|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 447999999999999999999999999999964
No 459
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.51 E-value=0.41 Score=47.61 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
....|+|+|+|..|+.+|..|...|.+|+++|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45689999999999999999999999999998754
No 460
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.51 E-value=0.4 Score=44.11 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~ 91 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 45689999999999999999999996 7999997644
No 461
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.48 E-value=0.43 Score=42.68 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
...+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46699999999999999999999997 89999974
No 462
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.40 E-value=0.31 Score=52.77 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
-..|.|||||..|...|..++..|++|+++|....
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 35799999999999999999999999999997643
No 463
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.22 E-value=0.33 Score=49.50 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4589999999999999999995 9999999954
No 464
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.17 E-value=0.41 Score=48.82 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+|+|+|..|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4579999999999999999999999999999875
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.15 E-value=0.48 Score=45.74 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~~ 90 (529)
+..+|+|||||-.|.+.|+.|+..| .+|+|+|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4569999999999999999999888 5899999754
No 466
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.13 E-value=0.72 Score=49.51 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||||.+|+-+|..|.+.|. +|+|+++++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45699999999999999999999886 699998764
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.09 E-value=0.51 Score=41.93 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.1
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGa-GiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
+..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999754
No 468
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.05 E-value=0.49 Score=43.76 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46799999999999999999999997 89999975
No 469
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.95 E-value=0.37 Score=39.88 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 60 VvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
++|+|+|..+.+.|..+...|++|+|+|-+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998743
No 470
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.87 E-value=0.57 Score=47.57 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
..++|+|||+|.||.-.|-+|++.|.+|+++-++.
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 56799999999999999999999999999997653
No 471
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.85 E-value=0.54 Score=45.28 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC--CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~--~V~llEa~ 89 (529)
...+|+|||+|-.|.++|+.|+..|. +++|+|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34599999999999999999999886 79999974
No 472
>PRK08328 hypothetical protein; Provisional
Probab=89.84 E-value=0.48 Score=43.37 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999997 799998653
No 473
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.82 E-value=0.5 Score=39.58 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHHCCC-CeEEEecccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~~ 91 (529)
+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 7999997644
No 474
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.80 E-value=0.51 Score=44.73 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...+++|||.|-.|.++|..|+..|.+|+++++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999998754
No 475
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.80 E-value=0.41 Score=49.60 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
...|.|||.|.+|+++|..|.++|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3479999999999999999999999999999754
No 476
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.67 E-value=0.4 Score=48.96 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+|||+|.+|+-.|..|++.+.+|+|+.++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 4579999999999999999999999999998764
No 477
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.64 E-value=0.51 Score=43.14 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45699999999999999999999997 899998753
No 478
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.58 E-value=0.4 Score=45.98 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHCCC-CeEEEeccc
Q 009678 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (529)
Q Consensus 60 VvIIGaGiaGlsaA~~L~~~g~-~V~llEa~~ 90 (529)
|.|||+|..|..+|+.|+..|. +|+|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999998876 999999863
No 479
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.55 E-value=0.41 Score=51.63 Aligned_cols=34 Identities=32% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHH-HCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~-~~g~~V~llEa~~ 90 (529)
-..|.|||||..|...|..++ +.|++|+|+|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999998 5899999999864
No 480
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.53 E-value=0.16 Score=49.43 Aligned_cols=33 Identities=42% Similarity=0.533 Sum_probs=27.7
Q ss_pred CeEEEECCChHHHHHHHHHHHC--------------CCCeEEEeccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADA--------------GHKPLLLEARD 90 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~--------------g~~V~llEa~~ 90 (529)
-.++|||||++|+-.|.+|+.- ..+|+++||.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 4689999999999999999851 35899999864
No 481
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.52 E-value=0.48 Score=45.37 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=27.8
Q ss_pred eEEEECCChHHHHHHHHHHHCCC--CeEEEecc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~--~V~llEa~ 89 (529)
+|+|||+|-.|.++|+.|+..+. +++|+|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999998875 79999974
No 482
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.42 E-value=0.39 Score=51.86 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHH-HCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~-~~g~~V~llEa~~ 90 (529)
-..|.|||||..|...|..++ +.|++|+++|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999999 7799999999854
No 483
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.40 E-value=0.57 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
....++|+|+|-+|.++|+.|++.|.+|+++.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999864
No 484
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.34 E-value=0.65 Score=44.17 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCC-eEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~-V~llEa~ 89 (529)
..+.++|+|||-+|.++|+.|++.|.+ |+|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 346899999999999999999999986 9999875
No 485
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.30 E-value=0.43 Score=48.73 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
+--|+|||-|-+|+++|..|.++|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4469999999999999999999999999999754
No 486
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.28 E-value=0.24 Score=40.29 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=29.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 54 ~~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
.....+|.|||+|-.|.+-|..|.+.|+.|.-+..++
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4467899999999999999999999999998887654
No 487
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.11 E-value=0.66 Score=42.80 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 55 ~~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+..+++|+|||..+...|..+...|++|+|+|.++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3567999999999999999999999999999997654
No 488
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=89.05 E-value=0.52 Score=46.66 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCCEEEEEEcCCcEEecCEEEEccCHHH
Q 009678 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (529)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~v~~~~G~~i~ad~VI~a~~~~~ 330 (529)
+.+.+++.|++++.+ .|++|..+ + + .|.+.+|+++.+|++|+|||...
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~-~-~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD-R-R--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc-c-C--EEEECCCCcccccEEEEccCCCC
Confidence 445566778998765 79999863 3 3 37788888899999999999754
No 489
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.80 E-value=0.77 Score=38.94 Aligned_cols=34 Identities=38% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~ 89 (529)
...+++|||+|..|.+.|..|++.| .+|++++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3568999999999999999999985 789999865
No 490
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.79 E-value=0.48 Score=45.21 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHCCCCeEEEeccc
Q 009678 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (529)
Q Consensus 59 dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~ 90 (529)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999998753
No 491
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=88.64 E-value=0.7 Score=45.09 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC---CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~---~V~llEa~ 89 (529)
++.+|+|.|||.+|+++|..|...|. +|.++|+.
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 56799999999999999999999986 79999976
No 492
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.41 E-value=0.8 Score=41.28 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCCCeEEEec
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa 88 (529)
+...|+|||||-.++.=+..|.+.|.+|+|+-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 467899999999999999999999999999943
No 493
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.35 E-value=0.56 Score=48.09 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 57 ~~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
..+|.|||.|-+|+++|..|.++|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 347999999999999999999999999999954
No 494
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.26 E-value=0.67 Score=45.92 Aligned_cols=34 Identities=35% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCCeEEEEC-CChHHHHHHHHHHHCCCCeEEEecc
Q 009678 56 KPLKVVIAG-AGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIG-aGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
...+|+||| .|..|-+.|..|.+.|++|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 557899999 8999999999999999999999974
No 495
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.19 E-value=0.61 Score=47.14 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~ 89 (529)
.+|+|||-|.+|+++|..|.++|++|++.|.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999964
No 496
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.15 E-value=0.64 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=30.9
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
++|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999998543
No 497
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.13 E-value=0.86 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=28.9
Q ss_pred CeEEEECC-ChHHHHHHHHHHHCCC--CeEEEecc
Q 009678 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEAR 89 (529)
Q Consensus 58 ~dVvIIGa-GiaGlsaA~~L~~~g~--~V~llEa~ 89 (529)
++|+|||+ |-.|.++|+.|+..+. +++|+|..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 47999999 9999999999998874 79999987
No 498
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.11 E-value=0.6 Score=47.54 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHCCCCeEEEecccc
Q 009678 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (529)
Q Consensus 58 ~dVvIIGaGiaGlsaA~~L~~~g~~V~llEa~~~ 91 (529)
.+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899999999999999999999999999998654
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.10 E-value=0.81 Score=43.31 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCC-CCeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g-~~V~llEa~ 89 (529)
...+++|+|+|-+|.++|+.|++.| .+|+|+.++
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4568999999999999999999999 689999875
No 500
>PRK06153 hypothetical protein; Provisional
Probab=88.02 E-value=0.41 Score=46.59 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHCCC-CeEEEecc
Q 009678 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEAR 89 (529)
Q Consensus 56 ~~~dVvIIGaGiaGlsaA~~L~~~g~-~V~llEa~ 89 (529)
...+|+|||.|-.|-.+|..|++.|. +++|+|..
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999999999999999999987 89999975
Done!