BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009679
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/521 (80%), Positives = 451/521 (86%), Gaps = 4/521 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 360 XXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDL
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422
Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
L CPD RIVTVCLEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN
Sbjct: 423 LICPDIRIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNN 481
Query: 480 EIYEKAVKILETYWVXXXXXXXXXXXXATQAG--FGFAGNG 518
EIYEKAVKILE YW+ A G F F G
Sbjct: 482 EIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 522
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/449 (80%), Positives = 388/449 (86%), Gaps = 3/449 (0%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 491
LEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 397 LEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 492 YWVXXXXXXXXXXXXATQAG--FGFAGNG 518
YW+ A G F F G
Sbjct: 456 YWMDEEDDTMGATTVAAPQGATFDFGQGG 484
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 262/498 (52%), Positives = 331/498 (66%), Gaps = 17/498 (3%)
Query: 10 EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQAHQPLTNS 62
E RR+ +K A+E RRRR+ VE+RK KR+E+L K+R +G + + +S
Sbjct: 15 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63 AALDNKKL----ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
+ D + + LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
+EF+ + LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFE 237
WALGNVAGDS RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP +
Sbjct: 195 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
ALP L +LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
V PALR VGNIVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGN 372
Query: 358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKP 415
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKP
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 432
Query: 416 LCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 475
LCDLL D RI+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q
Sbjct: 433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQ 491
Query: 476 HDNTEIYEKAVKILETYW 493
++N +IYEKA KI+ETY+
Sbjct: 492 NENDKIYEKAYKIIETYF 509
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433
+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 434 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493
GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++E Y+
Sbjct: 381 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433
+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 434 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493
GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++E Y+
Sbjct: 384 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 490 ETYW 493
ETY+
Sbjct: 418 ETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
V L+ LENI+K GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 490 ETYW 493
ETY+
Sbjct: 418 ETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 427
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 488 ILETYW 493
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 427
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 488 ILETYW 493
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 490 ETYW 493
ETY+
Sbjct: 419 ETYF 422
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 490 ETYW 493
ETY+
Sbjct: 419 ETYF 422
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/533 (43%), Positives = 322/533 (60%), Gaps = 22/533 (4%)
Query: 5 PNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL---QAHQPLTN 61
P AR ++K K D+ E RRRR + VE+RK K++E +LK+R A PL
Sbjct: 10 PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62 SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
+ S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+
Sbjct: 67 NRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181
FL + D +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWAL
Sbjct: 127 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 186
Query: 182 GNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLF 236
GN+AG RDLV+ +GA+ PLLA LRN TWTLSN CR K P P
Sbjct: 187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL
Sbjct: 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
++ PALR +GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG
Sbjct: 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAG 365
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
+ LV +L A+F+ +K AAWAI+N TSGG+ EQI +LV G I+PL
Sbjct: 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPL 425
Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
+LL+ D +I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H
Sbjct: 426 MNLLSAKDTKIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRH 479
Query: 477 DNTEIYEKAVKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
+N +Y+ ++ ++E Y+ T GF F +G P G FNF
Sbjct: 480 ENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 403 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 456
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T GF F +G P G FNF
Sbjct: 457 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T GF F +G P G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T GF F +G P G FNF
Sbjct: 421 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T GF F +G P G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 426
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T GF F +G P G FNF
Sbjct: 427 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 290/462 (62%), Gaps = 16/462 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 527
++E Y+ T GF F +G P G FN
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 401 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 454
Query: 487 KILETYW 493
++E Y+
Sbjct: 455 NLIEKYF 461
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 487 KILETYW 493
++E Y+
Sbjct: 420 NLIEKYF 426
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S + QL AT RKLLS E+ PPI+ +I++G++P+F+ FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ GA+ PLLA S+ LRN TWTLSN CR K P P + LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LL ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV++L A+F+ +KEA WA++N TSGG+ EQI +LV G I+PL +LL D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ+H+N +Y+ ++
Sbjct: 368 IILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKASL 421
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
++E Y+ T G+ F +G P G FNF
Sbjct: 422 SLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 487 KILETYW 493
++E Y+
Sbjct: 420 NLIEKYF 426
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 393 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 446
Query: 487 KILETYW 493
++E Y+
Sbjct: 447 NLIEKYF 453
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYW 493
++E Y+
Sbjct: 421 NLIEKYF 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 487 KILETYW 493
++E Y+
Sbjct: 416 NLIEKYF 422
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYW 493
++E Y+
Sbjct: 421 NLIEKYF 427
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 487 KILETYW 493
++E Y+
Sbjct: 416 NLIEKYF 422
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 148 bits (373), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 8/225 (3%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG---KPQPLFEQTRPALPALERL 249
V+ GAL P L Q +L+ A W LSN G + Q + + ALPAL +L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
+ S ++++L +A WALS ++ G N++ QAV EAG +L +L H
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 243 LPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
LV LL + +I +EA WA+SN SGG NEQI+ ++ G + L LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 422 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 481
P+ +I+ L L NI G +K QA+ +A LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 482 YEKAVKILE 490
++A + LE
Sbjct: 239 QKEAQEALE 247
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 232
Query: 422 CPDPRIVTVCLEGLENI 438
+ +I E LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 59 LTNSAALDNKKLES------LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
L+N A+ N+++++ LPA+V + S + I +A + S + I VI
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVID 178
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
+G +P ++ LS + LQ EA WAL+NIASG +E + V + GA+ +L S +
Sbjct: 179 AGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 173 VREQAVWAL 181
++++A AL
Sbjct: 238 IQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 130
LP MV + S D Q + + RKL I + I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 249
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 250 IHSNDDEVLTDACWALSYL 268
++++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 397
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 251
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 252 SNDDEVLTDACWALSYL 268
++++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 243 LPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 422 CPDPRIVTVCLEGLENI 438
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
P++ + L + A R I++ + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 397
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 130
LP MV + S D Q + + RKL I + I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 249
V+ GAL P L Q +L+ A W LSN G Q + A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 250 IHSNDDEVLTDACWALSYL 268
S ++++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
+E LQS N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASG 168
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 59 LTNSAALDNKKLES------LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
L+N A+ N+++++ LPA+V + S + I +A + S + I VI
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVID 136
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
+G +P ++ LS + LQ EA WAL+NIASG +E + V + GA P +L SSP +
Sbjct: 137 AGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK 195
Query: 173 VREQAVWAL 181
++++A AL
Sbjct: 196 IQKEAQEAL 204
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
L +L+ S D E +A L+ ++ G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 365
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 366 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425
LV LL + + E++KEAA A++N S G +E IK +V G ++ L LL D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485
+ L NI G T + +AI DA G+E ++ L + ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 486 VKILE 490
+ LE
Sbjct: 233 QRALE 237
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 49/273 (17%)
Query: 90 DATTQ---FRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
D+ TQ R L I P I ++ +G V ++ L+ D ++Q EAA AL NIAS
Sbjct: 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIAS 73
Query: 145 GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 204
G E + ++D G V + V+LL+S +V+++A AL N+A + ++ G + L
Sbjct: 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 133
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
+ +L+ S D EV +A A
Sbjct: 134 V------------------------------------------KLLTSTDSEVQKEAARA 151
Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
L+ ++ G ++ I+A+++AG LV+LL V A R + NI +G + I++
Sbjct: 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211
Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
+ L LLT + ++KEA + NI +G
Sbjct: 212 GGVEVLQKLLT-STDSEVQKEAQRALENIKSGG 243
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
L +L+ S D EV +A AL+ ++ G ++ I+A+++AG LV+LL V A R
Sbjct: 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 365
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 109 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 167
Query: 366 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425
LV LL + + E++KEAA A++N SG ++ IK +V G ++ L LL D
Sbjct: 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDS 226
Query: 426 RIVTVCLEGLENILKAG 442
+ LENI G
Sbjct: 227 EVQKEAQRALENIKSGG 243
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 22/148 (14%)
Query: 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189
Q Q A TN+ T+ V+ D +P+ + LL P DVR A +A+ D+
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 190 KCRDLVLSNGALMPLLAQFNEHAKLSML-----RNATWTLSNFCRG-KPQPLFEQTRPA- 242
RD + L NE ++ + R LS C K +++ A
Sbjct: 192 DIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAA 245
Query: 243 --------LPALERLIHSNDD-EVLTDA 261
LP L+ ++ DD E++T A
Sbjct: 246 GELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
+AL +A +P ++ + M +L+ N KL+ L NF + F+
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291
P LP + L+H D+ V A AL +L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDGTND 274
++ +
Sbjct: 478 AEAAYE 483
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 195 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLFEQTRPAL 243
G + L +H K++ N +WT+ N P P++ PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIY-NFYPAL 499
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 195 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLFEQTRPAL 243
G + L +H K++ N +WT+ N P P++ PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIY-NFYPAL 499
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDGTND 274
++ +
Sbjct: 478 AEAAYE 483
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDGTND 274
++ +
Sbjct: 478 AEAAYE 483
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 238 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 293
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 294 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 269 SDG 271
++
Sbjct: 353 AEA 355
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 21/206 (10%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXX 364
N++ G M + Q + LL+ N K C I + GN
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQI--LAYGNQESKLII 178
Query: 365 XXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLLNC 422
LVN++ +E + W S S + +V G ++ L L
Sbjct: 179 LASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235
Query: 423 PDPRIVTVCLEGLENILKAGEAEKNM 448
P R+V CL L N+ A ++ M
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEGM 261
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXX 364
N++ G M + Q + LL+ N K C I + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQI--LAYGNQESKLII 179
Query: 365 XXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCDLL 420
LVN++ +E + W S + SN+ +V G ++ L L
Sbjct: 180 LASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGLHL 234
Query: 421 NCPDPRIVTVCLEGLENILKAGEAEKNM 448
P R+V CL L N+ A ++ M
Sbjct: 235 TDPSQRLVQNCLWTLRNLSDAATKQEGM 262
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 177
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 178 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 232
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 233 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 262
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 182
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 183 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 237
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 238 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 267
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 183
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 184 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 238
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 239 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 268
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 236
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 237 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 266
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 166
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 167 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 221
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 222 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 251
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 168
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 169 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 223
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 224 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 253
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 179
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 180 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 234
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 264
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C + LS+ +G + A+ ++G P LV +L P SVL A+ T+
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREG----LLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258
Query: 308 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 259 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 312
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 420
LVN++ +E + W S S + +V G ++ L L
Sbjct: 313 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369
Query: 421 NCPDPRIVTVCLEGLENILKAGEAEKNM 448
P R+V CL L N+ A ++ M
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGM 397
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQF----------EAAWALTNIASGTSENTR 151
+ G +PR ++ L R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 236
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 237 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 266
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 180
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 181 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 235
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 236 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 265
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 219
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 220 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 249
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 253 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 308 GNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 362
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCD 418
LVN++ +E + W S + SN+ +V G ++ L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNK--PAIVEAGGMQALGL 219
Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNM 448
L P R+V CL L N+ A ++ M
Sbjct: 220 HLTDPSQRLVQNCLWTLRNLSDAATKQEGM 249
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 293
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVKYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 293
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 155 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 206
Query: 260 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 293
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 207 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 266
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 267 HRGIDAGLP 275
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVCYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 293
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337
A+ ++G P LV +L P SVL A+ T+ N++ + + L ++ LL +N
Sbjct: 98 AIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKN 157
Query: 338 YKKSIKKEA-CWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNA- 395
K + C + + GN LV ++ N +E + W S
Sbjct: 158 NPKFLAITTDCLQL--LAYGNQESKLIILANGGPQALVQIMRNYSYE---KLLWTTSRVL 212
Query: 396 ---TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-------------EGLENIL 439
+ SN+ +V G ++ L L PR+V CL EGLE++L
Sbjct: 213 KVLSVCPSNK--PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVL 270
Query: 440 K 440
K
Sbjct: 271 K 271
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 110/270 (40%), Gaps = 34/270 (12%)
Query: 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNG--A 200
S E + G +P VR+LSSP + V A+ L N+ + V L++G
Sbjct: 90 SHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQK 149
Query: 201 LMPLLAQFN--------EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
++PLL + N + +L N L G PQ L + R +
Sbjct: 150 MVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMR----------NY 199
Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
+ +++L L LS ++K A++EAG L + L SP ++ L T+ N+
Sbjct: 200 SYEKLLWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL-- 256
Query: 313 GDDMQTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNXXXXXXXXXX 369
D+ T+ + L +L +L ++ A T+SN+T N
Sbjct: 257 -SDVATK----QEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSG 311
Query: 370 XXPLVNLLLNA--EFEIKKEAAWAISNATS 397
L++ +L A + +I + A A+ + TS
Sbjct: 312 VEALIHAILRAGDKDDITEPAVCALRHLTS 341
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 21 DAEEGRRRREDNMVEIRKNKREESLLKKR 49
D+ E RRRR + VE+RK K+++ +LK+R
Sbjct: 13 DSTEMRRRRIEVNVELRKAKKDDQMLKRR 41
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 440 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494
K G + MG G +LFAQ D G +++ L D+ +I E L YW+
Sbjct: 195 KGGTGDCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDH-QITEVGTMNLFLYWI 248
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 151
+ G +PR ++ L R Q QF I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 112 QSGVVPRFIEFLSRD-DFPQLQFE--AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
+ +VP + F+ P ++ A A +I G N + A+P + L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSN 226
P+ VR+ W +G + P+ +++ L PLL E A+ + N W S+
Sbjct: 420 PSVVVRDTTAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSS 476
Query: 227 FCRG 230
Sbjct: 477 LAEA 480
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 135 RKIISRGFTP---RAVGRLHDELQERA 158
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 128 RKIISRGFTP---RAVGRLHDELQERA 151
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 119 RKIISRGFTP---RAVGRLHDELQERA 142
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 118 RKIISRGFTP---RAVGRLHDELQERA 141
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 126 RKIISRGFTP---RAVGRLHDELQERA 149
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 43/241 (17%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 318
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 319 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 355
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 356 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 409
Query: 357 N 357
N
Sbjct: 410 N 410
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 93 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 152
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 153 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 204
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 159 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 215
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 216 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 263
Query: 238 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 290
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 264 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 323
Query: 291 LL 292
L+
Sbjct: 324 LV 325
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 161 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 217
Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 218 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 265
Query: 238 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 290
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 266 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 325
Query: 291 LL 292
L+
Sbjct: 326 LV 327
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165
P+LQ EA + LT + N R+V + G P ++L
Sbjct: 141 PELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,523,339
Number of Sequences: 62578
Number of extensions: 563295
Number of successful extensions: 2410
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1503
Number of HSP's gapped (non-prelim): 140
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)