Query 009679
Match_columns 529
No_of_seqs 404 out of 2694
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 16:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.4E-88 2.9E-93 598.9 38.4 515 6-528 4-525 (526)
2 KOG0166 Karyopherin (importin) 100.0 2.8E-86 6E-91 632.0 50.7 507 9-528 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 1.2E-42 2.5E-47 332.9 33.9 368 71-442 109-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.1E-42 4.6E-47 306.2 23.8 366 70-439 113-495 (526)
5 PLN03200 cellulose synthase-in 100.0 5.1E-40 1.1E-44 359.2 44.0 408 69-498 187-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 6.1E-38 1.3E-42 343.1 44.8 416 71-496 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 3E-29 6.6E-34 224.8 25.7 364 68-442 123-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 2.7E-29 5.8E-34 225.1 25.3 404 69-494 83-493 (550)
9 PF05804 KAP: Kinesin-associat 100.0 1.4E-24 3.1E-29 220.7 39.2 394 74-496 253-651 (708)
10 PF05804 KAP: Kinesin-associat 100.0 1.4E-24 3.1E-29 220.8 37.7 365 67-447 286-656 (708)
11 KOG0168 Putative ubiquitin fus 99.9 5.4E-20 1.2E-24 181.9 29.2 391 72-478 168-656 (1051)
12 KOG1048 Neural adherens juncti 99.8 3.8E-18 8.3E-23 169.8 25.9 367 114-497 233-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 1.2E-15 2.5E-20 154.6 37.6 399 74-495 41-463 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 7.9E-16 1.7E-20 155.8 35.9 368 117-496 41-422 (503)
15 KOG1048 Neural adherens juncti 99.8 5E-17 1.1E-21 161.9 25.5 363 72-442 234-686 (717)
16 KOG2171 Karyopherin (importin) 99.7 3.6E-15 7.8E-20 154.0 32.4 388 28-444 53-508 (1075)
17 KOG4500 Rho/Rac GTPase guanine 99.7 3.4E-16 7.3E-21 144.4 22.1 381 82-480 53-460 (604)
18 KOG1222 Kinesin associated pro 99.7 1.2E-14 2.5E-19 136.2 30.5 360 72-447 305-670 (791)
19 KOG2122 Beta-catenin-binding p 99.7 1.5E-15 3.2E-20 157.9 26.1 363 73-442 199-603 (2195)
20 KOG4199 Uncharacterized conser 99.7 2.3E-14 5E-19 128.4 28.2 318 112-438 102-442 (461)
21 KOG1222 Kinesin associated pro 99.7 2.3E-14 5.1E-19 134.1 27.7 379 83-490 275-659 (791)
22 KOG2023 Nuclear transport rece 99.7 1.8E-15 3.8E-20 146.7 19.4 359 71-441 128-547 (885)
23 KOG4199 Uncharacterized conser 99.7 6E-14 1.3E-18 125.8 26.4 309 82-397 118-444 (461)
24 PRK09687 putative lyase; Provi 99.7 8.1E-15 1.8E-19 136.3 21.6 255 115-437 24-279 (280)
25 KOG2171 Karyopherin (importin) 99.7 4.7E-13 1E-17 138.6 34.6 396 72-490 37-500 (1075)
26 PRK09687 putative lyase; Provi 99.6 4.6E-14 1E-18 131.2 22.5 254 72-394 24-279 (280)
27 KOG4500 Rho/Rac GTPase guanine 99.6 3.7E-13 7.9E-18 124.7 27.3 400 71-485 87-510 (604)
28 PRK13800 putative oxidoreducta 99.6 4.6E-13 1E-17 145.5 29.6 275 71-436 621-895 (897)
29 KOG2023 Nuclear transport rece 99.6 2.4E-13 5.2E-18 132.1 22.6 349 76-442 95-507 (885)
30 KOG1293 Proteins containing ar 99.6 3.3E-12 7.2E-17 124.7 30.2 406 75-495 13-534 (678)
31 PF04826 Arm_2: Armadillo-like 99.6 5.4E-13 1.2E-17 121.1 22.7 238 239-485 10-253 (254)
32 KOG1293 Proteins containing ar 99.5 2.6E-12 5.6E-17 125.4 24.9 371 68-442 48-535 (678)
33 PRK13800 putative oxidoreducta 99.5 3.2E-12 6.9E-17 139.0 28.2 278 112-491 619-896 (897)
34 PF04826 Arm_2: Armadillo-like 99.5 2.1E-12 4.6E-17 117.2 19.8 196 111-313 9-206 (254)
35 PF01602 Adaptin_N: Adaptin N 99.5 1.6E-12 3.4E-17 135.2 21.5 361 72-496 80-446 (526)
36 KOG2122 Beta-catenin-binding p 99.5 1.6E-12 3.6E-17 135.8 20.8 362 118-496 201-603 (2195)
37 PTZ00429 beta-adaptin; Provisi 99.5 3.1E-10 6.6E-15 118.3 37.5 371 72-495 69-472 (746)
38 KOG1241 Karyopherin (importin) 99.5 1.7E-11 3.6E-16 121.5 25.7 360 75-444 94-481 (859)
39 PF01602 Adaptin_N: Adaptin N 99.5 9.7E-12 2.1E-16 129.3 25.9 329 71-443 42-372 (526)
40 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.8E-17 106.7 13.9 119 109-229 2-120 (120)
41 cd00020 ARM Armadillo/beta-cat 99.5 2.2E-12 4.9E-17 105.3 14.1 118 279-397 3-120 (120)
42 PTZ00429 beta-adaptin; Provisi 99.4 2.1E-09 4.6E-14 112.1 35.6 294 71-397 32-326 (746)
43 cd00256 VATPase_H VATPase_H, r 99.4 5.3E-10 1.2E-14 108.3 28.6 323 157-494 53-425 (429)
44 PF01749 IBB: Importin beta bi 99.4 1.3E-13 2.9E-18 105.2 1.8 88 6-93 3-96 (97)
45 cd00256 VATPase_H VATPase_H, r 99.3 1.5E-09 3.2E-14 105.2 27.3 321 72-397 54-425 (429)
46 KOG0168 Putative ubiquitin fus 99.3 1.5E-09 3.2E-14 109.1 25.6 342 72-421 212-653 (1051)
47 KOG1241 Karyopherin (importin) 99.3 1.5E-09 3.3E-14 107.9 23.0 361 72-441 365-764 (859)
48 KOG0213 Splicing factor 3b, su 99.2 3.1E-10 6.8E-15 112.0 15.8 344 72-439 717-1064(1172)
49 KOG0946 ER-Golgi vesicle-tethe 99.2 1E-07 2.2E-12 95.5 31.7 325 115-445 23-404 (970)
50 KOG1059 Vesicle coat complex A 99.2 7.9E-08 1.7E-12 95.3 29.3 218 73-313 146-366 (877)
51 KOG2759 Vacuolar H+-ATPase V1 99.2 5E-09 1.1E-13 97.9 19.5 280 73-356 116-439 (442)
52 KOG2160 Armadillo/beta-catenin 99.1 3.3E-08 7.2E-13 91.3 22.5 187 253-441 95-283 (342)
53 KOG0946 ER-Golgi vesicle-tethe 99.1 6E-07 1.3E-11 90.2 31.3 324 71-400 22-402 (970)
54 KOG1061 Vesicle coat complex A 99.1 6.8E-08 1.5E-12 97.2 24.0 341 71-444 49-419 (734)
55 KOG2160 Armadillo/beta-catenin 99.0 2E-08 4.4E-13 92.7 18.2 187 81-270 93-282 (342)
56 KOG2759 Vacuolar H+-ATPase V1 99.0 4.2E-07 9E-12 85.3 26.1 321 159-494 67-438 (442)
57 COG5215 KAP95 Karyopherin (imp 99.0 2E-07 4.3E-12 90.2 23.8 355 71-440 321-711 (858)
58 COG5215 KAP95 Karyopherin (imp 99.0 6.2E-07 1.3E-11 86.9 26.8 347 76-444 99-483 (858)
59 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.9E-08 4.1E-13 96.3 17.0 230 245-490 59-310 (312)
60 COG5181 HSH155 U2 snRNP splice 99.0 7.7E-09 1.7E-13 100.5 14.0 262 158-439 605-869 (975)
61 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.8E-08 8.3E-13 94.2 17.6 227 201-430 57-304 (312)
62 KOG1062 Vesicle coat complex A 98.9 1.2E-06 2.6E-11 88.3 26.7 290 77-402 113-419 (866)
63 KOG1062 Vesicle coat complex A 98.9 8.9E-07 1.9E-11 89.3 25.5 293 72-399 143-453 (866)
64 KOG1242 Protein containing ada 98.9 4E-06 8.7E-11 82.9 29.2 343 115-494 97-444 (569)
65 KOG0212 Uncharacterized conser 98.9 1.8E-07 4E-12 90.4 19.3 320 111-444 81-410 (675)
66 KOG1061 Vesicle coat complex A 98.9 1.3E-07 2.7E-12 95.3 18.3 372 73-492 123-526 (734)
67 KOG1824 TATA-binding protein-i 98.9 8.6E-07 1.9E-11 90.7 23.8 352 75-441 9-403 (1233)
68 KOG1517 Guanine nucleotide bin 98.9 2.7E-07 5.8E-12 95.2 20.0 277 84-371 449-748 (1387)
69 KOG1789 Endocytosis protein RM 98.8 2.4E-05 5.3E-10 81.1 31.6 328 87-422 1741-2141(2235)
70 KOG0213 Splicing factor 3b, su 98.8 1.8E-06 4E-11 86.1 22.0 333 116-496 801-1144(1172)
71 KOG4413 26S proteasome regulat 98.8 3.4E-05 7.3E-10 70.2 27.9 342 73-418 84-459 (524)
72 KOG1824 TATA-binding protein-i 98.8 1.2E-05 2.7E-10 82.5 27.8 410 72-494 48-599 (1233)
73 KOG1059 Vesicle coat complex A 98.7 1.6E-05 3.4E-10 79.5 26.3 255 115-399 145-403 (877)
74 COG5369 Uncharacterized conser 98.7 1.8E-07 3.8E-12 89.9 11.9 309 175-492 407-739 (743)
75 KOG3678 SARM protein (with ste 98.7 1.4E-06 3E-11 82.6 17.4 272 107-395 173-450 (832)
76 COG5181 HSH155 U2 snRNP splice 98.7 1.2E-05 2.6E-10 78.8 23.6 335 115-495 605-948 (975)
77 KOG1517 Guanine nucleotide bin 98.7 1.4E-06 3E-11 90.1 18.1 255 72-330 473-750 (1387)
78 KOG1060 Vesicle coat complex A 98.7 3E-05 6.6E-10 78.3 26.5 324 72-444 109-462 (968)
79 KOG1242 Protein containing ada 98.7 7.4E-06 1.6E-10 81.0 22.1 319 73-421 136-463 (569)
80 KOG3678 SARM protein (with ste 98.6 2.1E-06 4.5E-11 81.4 17.2 266 71-353 180-450 (832)
81 COG5369 Uncharacterized conser 98.6 4.8E-07 1E-11 87.0 11.4 282 109-395 426-739 (743)
82 KOG1060 Vesicle coat complex A 98.6 4.4E-05 9.6E-10 77.2 25.0 360 72-497 72-461 (968)
83 KOG0211 Protein phosphatase 2A 98.5 1.8E-05 3.9E-10 82.4 22.7 256 200-486 399-656 (759)
84 TIGR02270 conserved hypothetic 98.5 2.8E-05 6.1E-10 76.3 22.8 241 72-397 55-296 (410)
85 KOG1058 Vesicle coat complex C 98.5 4.5E-05 9.8E-10 76.7 24.1 317 122-497 107-466 (948)
86 TIGR02270 conserved hypothetic 98.5 3.6E-05 7.7E-10 75.5 22.7 244 114-441 54-297 (410)
87 KOG1077 Vesicle coat complex A 98.5 0.00077 1.7E-08 67.7 31.5 327 73-432 76-425 (938)
88 PF05536 Neurochondrin: Neuroc 98.5 0.00039 8.5E-09 71.2 30.6 380 72-472 6-458 (543)
89 KOG2973 Uncharacterized conser 98.5 0.00015 3.2E-09 65.7 23.8 275 202-496 6-317 (353)
90 KOG1789 Endocytosis protein RM 98.5 0.00012 2.6E-09 76.2 25.6 304 69-380 1769-2142(2235)
91 KOG1077 Vesicle coat complex A 98.5 0.00079 1.7E-08 67.6 30.2 301 119-442 79-400 (938)
92 KOG2973 Uncharacterized conser 98.5 4.4E-05 9.5E-10 69.0 19.7 270 116-399 5-316 (353)
93 KOG4413 26S proteasome regulat 98.4 7.4E-05 1.6E-09 68.1 20.8 302 69-376 126-460 (524)
94 KOG0212 Uncharacterized conser 98.4 2.7E-05 5.9E-10 75.8 18.8 317 72-400 85-409 (675)
95 KOG0211 Protein phosphatase 2A 98.4 9E-05 2E-09 77.4 22.8 387 74-497 240-628 (759)
96 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00014 3.1E-09 70.5 22.9 313 160-493 28-363 (371)
97 KOG0915 Uncharacterized conser 98.4 2.7E-05 5.8E-10 84.1 19.1 340 73-431 820-1192(1702)
98 COG1413 FOG: HEAT repeat [Ener 98.4 0.00032 7E-09 68.3 25.9 250 72-398 44-305 (335)
99 KOG2259 Uncharacterized conser 98.4 2.1E-05 4.6E-10 77.9 16.9 221 204-442 203-441 (823)
100 KOG4646 Uncharacterized conser 98.3 1.3E-05 2.9E-10 63.0 12.0 154 326-494 17-170 (173)
101 KOG1240 Protein kinase contain 98.3 3.8E-05 8.2E-10 81.2 18.4 295 158-494 423-725 (1431)
102 PF00514 Arm: Armadillo/beta-c 98.3 1.9E-06 4.1E-11 54.5 4.9 41 146-186 1-41 (41)
103 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00014 3E-09 70.7 19.6 319 114-442 25-366 (371)
104 PF12460 MMS19_C: RNAPII trans 98.2 0.0014 3E-08 65.7 26.9 346 74-443 2-397 (415)
105 PF00514 Arm: Armadillo/beta-c 98.2 3.1E-06 6.8E-11 53.5 5.0 41 357-397 1-41 (41)
106 KOG1240 Protein kinase contain 98.2 6.9E-05 1.5E-09 79.3 17.1 270 73-355 424-725 (1431)
107 KOG2259 Uncharacterized conser 98.2 5.5E-05 1.2E-09 75.1 15.3 253 161-436 202-471 (823)
108 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00011 2.3E-09 66.7 15.9 229 122-355 157-428 (432)
109 COG1413 FOG: HEAT repeat [Ener 98.2 0.00032 7E-09 68.3 21.0 249 114-439 43-303 (335)
110 KOG4646 Uncharacterized conser 98.1 4.5E-05 9.7E-10 60.1 10.0 115 114-231 16-130 (173)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00042 9E-09 63.1 17.5 237 245-495 153-429 (432)
112 COG5240 SEC21 Vesicle coat com 98.1 0.00014 3E-09 71.2 15.3 288 74-397 267-555 (898)
113 PF13513 HEAT_EZ: HEAT-like re 98.1 8.5E-06 1.8E-10 55.5 5.2 55 340-395 1-55 (55)
114 PF10165 Ric8: Guanine nucleot 98.1 0.0012 2.5E-08 66.3 22.3 253 106-359 14-341 (446)
115 COG5096 Vesicle coat complex, 98.0 0.011 2.3E-07 61.8 28.7 141 72-230 56-196 (757)
116 KOG0915 Uncharacterized conser 98.0 0.0028 6.1E-08 69.2 25.2 316 114-442 998-1346(1702)
117 PF12348 CLASP_N: CLASP N term 98.0 4.4E-05 9.6E-10 69.8 10.4 186 293-495 17-207 (228)
118 KOG2062 26S proteasome regulat 98.0 0.00023 5.1E-09 71.6 15.8 159 241-426 519-680 (929)
119 PF12755 Vac14_Fab1_bd: Vacuol 98.0 4.7E-05 1E-09 58.2 8.6 95 342-440 2-96 (97)
120 PF05536 Neurochondrin: Neuroc 98.0 0.0011 2.4E-08 68.0 21.1 236 159-397 7-261 (543)
121 PF12348 CLASP_N: CLASP N term 98.0 0.00012 2.5E-09 67.1 12.7 186 251-443 17-209 (228)
122 KOG1943 Beta-tubulin folding c 98.0 0.0045 9.8E-08 65.5 25.2 260 114-397 341-611 (1133)
123 KOG2734 Uncharacterized conser 97.9 0.0039 8.5E-08 59.5 21.9 225 107-334 118-370 (536)
124 KOG1991 Nuclear transport rece 97.9 0.0079 1.7E-07 63.2 25.7 321 114-441 410-758 (1010)
125 PF13646 HEAT_2: HEAT repeats; 97.9 3.9E-05 8.3E-10 58.3 6.2 87 243-351 1-88 (88)
126 PF13646 HEAT_2: HEAT repeats; 97.8 4.5E-05 9.8E-10 57.9 6.3 87 116-225 1-88 (88)
127 COG5240 SEC21 Vesicle coat com 97.8 0.0079 1.7E-07 59.4 22.5 308 135-493 247-554 (898)
128 KOG1991 Nuclear transport rece 97.8 0.027 5.8E-07 59.4 26.6 358 74-442 465-850 (1010)
129 PF12460 MMS19_C: RNAPII trans 97.7 0.011 2.4E-07 59.2 23.2 297 84-399 56-396 (415)
130 KOG2734 Uncharacterized conser 97.7 0.013 2.9E-07 56.0 21.4 223 238-473 122-369 (536)
131 KOG1058 Vesicle coat complex C 97.7 0.0025 5.4E-08 64.7 17.5 325 76-443 104-466 (948)
132 COG5096 Vesicle coat complex, 97.7 0.062 1.3E-06 56.3 28.0 169 80-271 28-196 (757)
133 KOG2274 Predicted importin 9 [ 97.7 0.038 8.2E-07 57.7 25.6 248 167-422 460-719 (1005)
134 PF08569 Mo25: Mo25-like; Int 97.7 0.011 2.5E-07 56.4 20.6 207 277-494 70-283 (335)
135 KOG4535 HEAT and armadillo rep 97.7 0.0024 5.2E-08 61.5 15.7 147 294-442 402-561 (728)
136 KOG0567 HEAT repeat-containing 97.6 0.0072 1.6E-07 53.9 17.0 255 117-438 6-278 (289)
137 KOG1078 Vesicle coat complex C 97.6 0.0041 8.9E-08 63.5 17.4 284 73-396 247-531 (865)
138 KOG1248 Uncharacterized conser 97.6 0.035 7.6E-07 59.8 24.9 235 203-442 657-900 (1176)
139 PF13513 HEAT_EZ: HEAT-like re 97.6 9.5E-05 2.1E-09 50.3 4.2 55 214-268 1-55 (55)
140 KOG1943 Beta-tubulin folding c 97.5 0.14 3E-06 54.9 27.7 340 72-441 342-706 (1133)
141 KOG4535 HEAT and armadillo rep 97.5 0.00044 9.6E-09 66.3 9.0 300 130-436 270-599 (728)
142 smart00185 ARM Armadillo/beta- 97.5 0.0003 6.5E-09 44.3 5.3 39 147-185 2-40 (41)
143 KOG2274 Predicted importin 9 [ 97.5 0.019 4E-07 59.9 20.4 237 122-366 457-700 (1005)
144 KOG0567 HEAT repeat-containing 97.5 0.018 4E-07 51.5 17.5 243 84-397 18-280 (289)
145 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0029 6.4E-08 48.4 11.0 93 384-492 2-94 (97)
146 KOG1078 Vesicle coat complex C 97.4 0.011 2.3E-07 60.7 17.1 286 115-440 246-532 (865)
147 PF09759 Atx10homo_assoc: Spin 97.4 0.0011 2.4E-08 50.6 8.0 67 131-197 2-70 (102)
148 smart00185 ARM Armadillo/beta- 97.4 0.00054 1.2E-08 43.1 5.3 40 358-397 2-41 (41)
149 KOG1248 Uncharacterized conser 97.4 0.025 5.5E-07 60.8 20.0 243 119-366 658-910 (1176)
150 PF05918 API5: Apoptosis inhib 97.3 0.073 1.6E-06 54.0 22.3 295 117-443 26-348 (556)
151 KOG2062 26S proteasome regulat 97.3 0.03 6.4E-07 57.2 18.8 167 286-490 522-690 (929)
152 PRK14707 hypothetical protein; 97.3 0.42 9.1E-06 55.0 28.8 356 116-492 165-527 (2710)
153 KOG1967 DNA repair/transcripti 97.3 0.0023 5.1E-08 66.4 11.0 188 159-351 817-1020(1030)
154 PF08569 Mo25: Mo25-like; Int 97.2 0.009 1.9E-07 57.1 14.3 203 152-356 71-284 (335)
155 PF05004 IFRD: Interferon-rela 97.2 0.057 1.2E-06 51.4 19.6 196 244-444 46-261 (309)
156 PF12717 Cnd1: non-SMC mitotic 97.2 0.018 4E-07 50.1 15.0 93 213-313 1-93 (178)
157 COG5656 SXM1 Importin, protein 97.2 0.13 2.7E-06 52.9 21.8 281 113-400 407-714 (970)
158 KOG4151 Myosin assembly protei 97.2 0.021 4.6E-07 58.9 16.6 238 191-436 496-737 (748)
159 PF10165 Ric8: Guanine nucleot 97.1 0.093 2E-06 52.8 21.1 228 81-312 42-337 (446)
160 PF09759 Atx10homo_assoc: Spin 97.1 0.0036 7.7E-08 47.9 8.3 68 299-366 2-70 (102)
161 PF12717 Cnd1: non-SMC mitotic 97.1 0.018 3.9E-07 50.1 13.9 111 254-379 1-112 (178)
162 PF05004 IFRD: Interferon-rela 97.1 0.039 8.4E-07 52.5 16.7 192 72-270 44-257 (309)
163 KOG0414 Chromosome condensatio 97.0 0.068 1.5E-06 57.6 19.3 147 237-399 915-1066(1251)
164 PF11841 DUF3361: Domain of un 97.0 0.029 6.3E-07 46.7 13.3 129 277-406 5-140 (160)
165 PRK14707 hypothetical protein; 97.0 0.86 1.9E-05 52.7 28.0 399 73-494 165-571 (2710)
166 COG5116 RPN2 26S proteasome re 97.0 0.026 5.5E-07 55.9 14.9 155 245-424 520-675 (926)
167 PF04078 Rcd1: Cell differenti 97.0 0.013 2.8E-07 52.8 12.0 187 84-274 8-222 (262)
168 KOG4151 Myosin assembly protei 96.9 0.015 3.2E-07 60.0 12.6 244 144-394 491-738 (748)
169 KOG1243 Protein kinase [Genera 96.9 0.065 1.4E-06 54.7 16.9 194 238-445 327-520 (690)
170 KOG4653 Uncharacterized conser 96.8 0.072 1.6E-06 55.5 16.2 218 210-438 737-962 (982)
171 PF05918 API5: Apoptosis inhib 96.8 0.047 1E-06 55.4 14.8 248 162-439 28-296 (556)
172 PF06025 DUF913: Domain of Unk 96.8 0.46 1E-05 46.6 21.5 190 134-337 3-208 (379)
173 KOG1967 DNA repair/transcripti 96.7 0.028 6.1E-07 58.8 13.4 156 238-396 864-1023(1030)
174 KOG1020 Sister chromatid cohes 96.7 1.4 3.1E-05 49.3 33.8 144 72-231 817-962 (1692)
175 PF11841 DUF3361: Domain of un 96.7 0.054 1.2E-06 45.1 12.6 127 191-317 3-136 (160)
176 KOG2956 CLIP-associating prote 96.7 0.083 1.8E-06 51.3 15.3 147 200-355 330-477 (516)
177 PF12719 Cnd3: Nuclear condens 96.7 0.18 4E-06 48.0 18.1 171 114-295 26-209 (298)
178 KOG2032 Uncharacterized conser 96.7 0.24 5.1E-06 48.6 18.4 258 167-440 268-531 (533)
179 PF04078 Rcd1: Cell differenti 96.7 0.083 1.8E-06 47.7 14.3 184 254-440 8-218 (262)
180 KOG2025 Chromosome condensatio 96.6 0.25 5.5E-06 50.5 18.8 109 237-352 81-190 (892)
181 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0065 1.4E-07 47.8 6.3 70 412-493 44-114 (119)
182 KOG0414 Chromosome condensatio 96.6 0.021 4.5E-07 61.4 11.8 161 114-295 919-1083(1251)
183 KOG2032 Uncharacterized conser 96.6 0.28 6.1E-06 48.1 18.3 181 297-495 231-417 (533)
184 KOG2956 CLIP-associating prote 96.6 0.16 3.5E-06 49.4 16.2 173 215-398 302-478 (516)
185 KOG4653 Uncharacterized conser 96.5 0.07 1.5E-06 55.6 14.1 224 119-353 732-962 (982)
186 PF11701 UNC45-central: Myosin 96.4 0.031 6.7E-07 47.4 9.4 144 286-437 6-156 (157)
187 PF14668 RICTOR_V: Rapamycin-i 96.3 0.035 7.6E-07 39.6 8.0 66 343-411 4-70 (73)
188 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.0087 1.9E-07 47.1 5.1 73 240-312 42-115 (119)
189 PF11864 DUF3384: Domain of un 96.3 1.6 3.5E-05 44.5 30.6 287 85-397 4-330 (464)
190 PF06371 Drf_GBD: Diaphanous G 96.3 0.033 7.1E-07 49.0 9.4 111 72-185 67-186 (187)
191 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.3 2.9E-05 47.5 22.5 210 154-378 114-360 (802)
192 KOG3665 ZYG-1-like serine/thre 96.2 0.56 1.2E-05 50.0 19.8 195 180-394 494-694 (699)
193 PF12719 Cnd3: Nuclear condens 96.2 0.019 4.1E-07 54.7 8.1 108 330-443 32-146 (298)
194 KOG3036 Protein involved in ce 96.0 1 2.2E-05 40.2 20.2 199 71-273 26-250 (293)
195 PF06025 DUF913: Domain of Unk 96.0 0.3 6.6E-06 47.9 15.5 156 91-247 80-250 (379)
196 COG5098 Chromosome condensatio 96.0 0.29 6.4E-06 49.9 15.2 173 80-273 862-1040(1128)
197 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.1 4.6E-05 46.0 22.2 240 240-495 116-407 (802)
198 COG5218 YCG1 Chromosome conden 95.9 0.5 1.1E-05 47.4 16.1 110 236-351 86-195 (885)
199 KOG3036 Protein involved in ce 95.9 1.2 2.5E-05 39.8 18.0 141 298-441 94-248 (293)
200 PF02985 HEAT: HEAT repeat; I 95.9 0.013 2.8E-07 34.1 3.3 30 369-398 1-30 (31)
201 KOG1820 Microtubule-associated 95.8 0.21 4.5E-06 53.4 14.0 192 241-442 253-445 (815)
202 PF02985 HEAT: HEAT repeat; I 95.8 0.013 2.9E-07 34.1 3.0 29 115-144 1-29 (31)
203 PF11864 DUF3384: Domain of un 95.7 2.8 6.1E-05 42.7 26.5 254 83-355 41-330 (464)
204 COG5656 SXM1 Importin, protein 95.6 3.4 7.4E-05 43.0 25.4 299 134-445 389-716 (970)
205 PF08045 CDC14: Cell division 95.6 0.3 6.5E-06 44.5 12.6 101 385-498 108-211 (257)
206 PF11701 UNC45-central: Myosin 95.6 0.092 2E-06 44.5 8.8 148 325-491 3-156 (157)
207 PF11865 DUF3385: Domain of un 95.6 0.13 2.7E-06 43.8 9.5 147 114-269 10-156 (160)
208 COG5116 RPN2 26S proteasome re 95.5 0.12 2.5E-06 51.4 10.1 151 121-295 523-674 (926)
209 KOG1820 Microtubule-associated 95.5 0.34 7.4E-06 51.8 14.3 188 159-355 255-443 (815)
210 KOG1243 Protein kinase [Genera 95.5 0.47 1E-05 48.7 14.6 257 74-355 257-515 (690)
211 KOG1566 Conserved protein Mo25 95.4 1.7 3.7E-05 40.4 16.5 207 277-497 73-289 (342)
212 KOG1020 Sister chromatid cohes 95.3 0.25 5.5E-06 54.9 12.8 166 218-397 795-960 (1692)
213 PF11707 Npa1: Ribosome 60S bi 95.3 2.6 5.5E-05 40.8 18.7 157 285-441 58-238 (330)
214 PF14500 MMS19_N: Dos2-interac 95.3 1.3 2.8E-05 41.1 15.8 218 119-355 4-237 (262)
215 PF07814 WAPL: Wings apart-lik 95.2 1.1 2.5E-05 43.8 16.1 275 116-399 23-357 (361)
216 PF08045 CDC14: Cell division 95.2 0.39 8.4E-06 43.8 11.8 100 299-398 107-208 (257)
217 KOG1566 Conserved protein Mo25 95.2 2.6 5.6E-05 39.2 16.8 203 193-399 73-288 (342)
218 KOG2025 Chromosome condensatio 95.1 2.9 6.4E-05 43.2 18.7 103 201-309 87-190 (892)
219 PF14668 RICTOR_V: Rapamycin-i 95.1 0.19 4E-06 36.0 7.5 66 300-367 4-69 (73)
220 KOG1949 Uncharacterized conser 95.0 0.76 1.6E-05 47.2 14.1 190 242-439 175-369 (1005)
221 KOG1949 Uncharacterized conser 95.0 4.1 8.9E-05 42.2 19.1 236 240-499 128-376 (1005)
222 KOG2933 Uncharacterized conser 94.9 0.11 2.3E-06 47.9 7.5 142 284-439 89-233 (334)
223 PF11707 Npa1: Ribosome 60S bi 94.8 4.1 8.8E-05 39.4 22.2 160 327-495 58-238 (330)
224 COG5098 Chromosome condensatio 94.8 0.16 3.5E-06 51.7 9.0 142 284-442 893-1039(1128)
225 KOG1993 Nuclear transport rece 94.7 6.9 0.00015 41.2 23.2 312 117-441 529-865 (978)
226 PLN03076 ARF guanine nucleotid 94.5 4.7 0.0001 47.5 20.9 265 168-442 1148-1491(1780)
227 PF07814 WAPL: Wings apart-lik 94.4 1.8 3.9E-05 42.4 15.2 242 159-410 23-311 (361)
228 PF12530 DUF3730: Protein of u 94.4 4 8.6E-05 37.2 17.4 204 244-480 3-218 (234)
229 KOG1525 Sister chromatid cohes 94.4 10 0.00022 43.2 22.1 73 324-398 258-330 (1266)
230 KOG2611 Neurochondrin/leucine- 94.3 5 0.00011 39.6 17.2 189 74-269 14-224 (698)
231 PF12530 DUF3730: Protein of u 94.2 4.3 9.4E-05 37.0 18.0 202 116-337 2-215 (234)
232 KOG1525 Sister chromatid cohes 94.2 4.5 9.7E-05 45.8 19.0 148 283-441 259-406 (1266)
233 PF11865 DUF3385: Domain of un 94.0 0.48 1E-05 40.2 9.2 38 325-362 10-47 (160)
234 KOG2933 Uncharacterized conser 94.0 0.57 1.2E-05 43.3 10.0 145 241-398 88-235 (334)
235 PF01603 B56: Protein phosphat 94.0 0.74 1.6E-05 45.9 11.8 260 91-364 110-379 (409)
236 KOG2137 Protein kinase [Signal 93.8 1.5 3.3E-05 45.3 13.6 208 215-441 288-497 (700)
237 PF01347 Vitellogenin_N: Lipop 93.7 1.2 2.6E-05 47.4 13.8 164 242-435 432-617 (618)
238 PF13251 DUF4042: Domain of un 93.5 1.8 4E-05 37.4 11.9 143 299-442 2-176 (182)
239 PF08506 Cse1: Cse1; InterPro 93.5 5.9 0.00013 38.8 16.8 147 279-435 206-370 (370)
240 PF01603 B56: Protein phosphat 93.5 4.1 9E-05 40.6 16.1 233 153-398 129-371 (409)
241 PF12231 Rif1_N: Rap1-interact 93.4 8.6 0.00019 37.9 20.4 266 170-440 59-352 (372)
242 KOG2137 Protein kinase [Signal 93.3 3 6.5E-05 43.3 14.7 175 238-424 346-521 (700)
243 COG5218 YCG1 Chromosome conden 93.3 0.99 2.2E-05 45.4 11.0 115 265-390 75-192 (885)
244 smart00638 LPD_N Lipoprotein N 93.3 3.7 8E-05 43.3 16.4 163 241-434 393-572 (574)
245 PF12830 Nipped-B_C: Sister ch 93.3 3.6 7.9E-05 36.0 13.7 147 72-231 9-169 (187)
246 PF14500 MMS19_N: Dos2-interac 93.2 7.1 0.00015 36.2 16.4 220 76-315 4-240 (262)
247 PF10363 DUF2435: Protein of u 93.2 0.46 1E-05 35.9 6.8 84 285-379 5-88 (92)
248 PF03378 CAS_CSE1: CAS/CSE pro 93.0 9.4 0.0002 38.4 17.7 265 169-442 42-326 (435)
249 PF04063 DUF383: Domain of unk 93.0 1.6 3.4E-05 38.2 10.8 105 292-398 4-133 (192)
250 KOG1992 Nuclear export recepto 92.9 7.5 0.00016 41.1 16.8 164 234-398 491-669 (960)
251 PF04063 DUF383: Domain of unk 92.9 1.3 2.8E-05 38.8 10.0 123 253-379 7-158 (192)
252 KOG3665 ZYG-1-like serine/thre 92.8 2.4 5.2E-05 45.3 13.9 195 138-350 494-692 (699)
253 PF01347 Vitellogenin_N: Lipop 92.6 5.7 0.00012 42.4 16.8 197 115-346 396-613 (618)
254 PF13251 DUF4042: Domain of un 92.5 4 8.7E-05 35.3 12.4 142 131-272 2-176 (182)
255 KOG0413 Uncharacterized conser 92.4 19 0.0004 39.1 23.3 127 299-442 947-1075(1529)
256 PLN03076 ARF guanine nucleotid 92.2 18 0.0004 42.9 20.7 263 82-355 1148-1489(1780)
257 cd03568 VHS_STAM VHS domain fa 92.1 0.51 1.1E-05 39.2 6.4 75 412-497 38-113 (144)
258 KOG2611 Neurochondrin/leucine- 92.1 14 0.00029 36.8 19.2 233 161-397 15-274 (698)
259 PF08167 RIX1: rRNA processing 92.0 1.1 2.5E-05 38.2 8.7 112 283-398 25-144 (165)
260 KOG1848 Uncharacterized conser 92.0 6.7 0.00014 44.0 15.8 193 283-493 928-1131(1610)
261 KOG2999 Regulator of Rac1, req 91.9 2.6 5.5E-05 42.3 11.6 157 327-499 85-247 (713)
262 PF10363 DUF2435: Protein of u 91.7 0.72 1.6E-05 34.9 6.2 73 72-148 4-76 (92)
263 KOG2999 Regulator of Rac1, req 91.4 9.2 0.0002 38.5 14.7 164 243-408 85-253 (713)
264 KOG0413 Uncharacterized conser 91.3 15 0.00033 39.8 16.9 129 171-312 945-1073(1529)
265 KOG1992 Nuclear export recepto 91.3 23 0.00049 37.8 25.4 399 75-498 41-531 (960)
266 PF14225 MOR2-PAG1_C: Cell mor 91.3 12 0.00026 34.6 15.3 215 77-313 13-255 (262)
267 PF06371 Drf_GBD: Diaphanous G 91.3 2 4.4E-05 37.5 9.8 83 270-354 94-186 (187)
268 COG5209 RCD1 Uncharacterized p 90.6 3.9 8.5E-05 36.0 10.3 108 83-192 111-224 (315)
269 KOG1822 Uncharacterized conser 90.5 42 0.00092 39.5 21.3 273 159-440 878-1189(2067)
270 KOG1832 HIV-1 Vpr-binding prot 90.1 8.7 0.00019 41.0 13.9 316 83-408 365-782 (1516)
271 KOG1993 Nuclear transport rece 90.1 29 0.00062 36.9 25.1 318 110-442 484-814 (978)
272 smart00638 LPD_N Lipoprotein N 89.8 12 0.00026 39.4 15.7 159 158-345 394-568 (574)
273 cd03567 VHS_GGA VHS domain fam 89.5 4.4 9.6E-05 33.4 9.5 72 369-440 39-116 (139)
274 cd03568 VHS_STAM VHS domain fa 89.4 3.2 6.9E-05 34.5 8.7 71 369-439 38-109 (144)
275 PF08324 PUL: PUL domain; Int 89.4 8.6 0.00019 35.9 12.9 143 130-274 78-235 (268)
276 KOG4464 Signaling protein RIC- 89.4 12 0.00025 36.4 13.1 103 169-271 109-232 (532)
277 KOG2005 26S proteasome regulat 89.3 22 0.00048 36.9 15.7 287 72-400 416-707 (878)
278 PF04388 Hamartin: Hamartin pr 88.7 7.5 0.00016 41.5 13.0 157 72-250 5-161 (668)
279 cd03569 VHS_Hrs_Vps27p VHS dom 88.5 1.4 3E-05 36.6 5.9 74 71-144 41-114 (142)
280 PF03378 CAS_CSE1: CAS/CSE pro 88.4 18 0.00039 36.4 14.8 262 129-398 44-325 (435)
281 cd03561 VHS VHS domain family; 88.2 5.7 0.00012 32.5 9.4 73 369-441 38-113 (133)
282 cd03572 ENTH_epsin_related ENT 87.9 9.2 0.0002 30.6 9.9 94 386-496 19-121 (122)
283 KOG1410 Nuclear transport rece 87.8 38 0.00082 35.3 20.7 300 71-395 5-332 (1082)
284 KOG0891 DNA-dependent protein 87.6 6 0.00013 47.7 12.3 267 80-356 490-764 (2341)
285 PF12031 DUF3518: Domain of un 87.2 2.3 4.9E-05 38.1 6.7 80 130-210 139-227 (257)
286 PF14726 RTTN_N: Rotatin, an a 87.2 6.1 0.00013 30.2 8.2 69 410-491 29-97 (98)
287 PF12830 Nipped-B_C: Sister ch 87.0 20 0.00043 31.3 13.2 70 115-190 9-78 (187)
288 PF08506 Cse1: Cse1; InterPro 86.4 35 0.00076 33.5 20.8 215 256-489 111-370 (370)
289 PF06685 DUF1186: Protein of u 86.4 26 0.00057 32.1 13.8 128 282-415 72-201 (249)
290 cd03572 ENTH_epsin_related ENT 86.2 8.9 0.00019 30.7 9.0 72 369-440 39-119 (122)
291 smart00288 VHS Domain present 86.0 2.3 5E-05 34.8 5.9 74 71-144 37-111 (133)
292 PF08167 RIX1: rRNA processing 85.9 16 0.00034 31.3 11.2 114 115-232 26-146 (165)
293 PF04869 Uso1_p115_head: Uso1 85.8 24 0.00052 33.7 13.3 173 296-473 51-261 (312)
294 cd03569 VHS_Hrs_Vps27p VHS dom 85.7 8 0.00017 32.0 9.0 72 369-440 42-114 (142)
295 PF10521 DUF2454: Protein of u 85.6 7.3 0.00016 36.7 9.8 70 115-185 120-202 (282)
296 COG5209 RCD1 Uncharacterized p 85.3 3.4 7.4E-05 36.4 6.7 97 346-443 120-221 (315)
297 PF14726 RTTN_N: Rotatin, an a 85.3 8.8 0.00019 29.3 8.2 93 86-181 2-95 (98)
298 cd03561 VHS VHS domain family; 85.2 4 8.7E-05 33.4 7.0 74 71-144 37-112 (133)
299 PF06685 DUF1186: Protein of u 84.7 32 0.00069 31.5 14.0 102 155-268 71-181 (249)
300 PF12031 DUF3518: Domain of un 84.4 2.8 6E-05 37.6 5.8 84 298-382 139-230 (257)
301 cd03567 VHS_GGA VHS domain fam 84.2 3.4 7.3E-05 34.0 6.0 74 71-144 38-116 (139)
302 PF10521 DUF2454: Protein of u 84.0 12 0.00026 35.2 10.5 138 283-422 119-276 (282)
303 KOG0891 DNA-dependent protein 83.8 68 0.0015 39.5 18.2 269 162-438 486-761 (2341)
304 PF12726 SEN1_N: SEN1 N termin 83.5 73 0.0016 34.8 25.6 115 369-497 442-556 (727)
305 KOG1410 Nuclear transport rece 83.1 64 0.0014 33.8 17.4 309 160-492 8-332 (1082)
306 PF13001 Ecm29: Proteasome sta 82.8 62 0.0013 33.4 24.7 160 326-498 320-492 (501)
307 PF10274 ParcG: Parkin co-regu 82.5 9.4 0.0002 32.9 8.2 77 368-446 38-115 (183)
308 PF08324 PUL: PUL domain; Int 82.4 4.6 9.9E-05 37.8 7.1 188 286-487 66-267 (268)
309 PF10274 ParcG: Parkin co-regu 82.2 32 0.0007 29.7 11.5 75 283-359 38-113 (183)
310 PF14225 MOR2-PAG1_C: Cell mor 81.2 46 0.001 30.9 15.9 181 157-355 64-254 (262)
311 KOG1848 Uncharacterized conser 80.0 61 0.0013 37.0 14.9 99 167-270 852-958 (1610)
312 PF12074 DUF3554: Domain of un 79.5 18 0.00039 35.2 10.3 216 113-336 21-255 (339)
313 KOG0392 SNF2 family DNA-depend 79.3 15 0.00033 41.0 10.1 237 71-315 77-328 (1549)
314 PF12726 SEN1_N: SEN1 N termin 78.5 56 0.0012 35.6 14.7 142 75-231 445-587 (727)
315 KOG1822 Uncharacterized conser 78.2 1.5E+02 0.0033 35.3 17.6 214 116-337 878-1110(2067)
316 KOG4464 Signaling protein RIC- 77.7 49 0.0011 32.4 11.8 153 203-355 49-231 (532)
317 KOG2229 Protein required for a 76.6 20 0.00043 35.9 9.2 155 307-488 3-160 (616)
318 smart00288 VHS Domain present 76.6 20 0.00042 29.4 8.2 72 369-440 38-111 (133)
319 PF11538 Snurportin1: Snurport 76.5 2 4.3E-05 26.4 1.7 38 11-49 2-39 (40)
320 KOG0889 Histone acetyltransfer 75.7 1.3E+02 0.0028 38.3 16.9 298 114-419 984-1327(3550)
321 PF04388 Hamartin: Hamartin pr 75.6 41 0.0009 36.0 12.3 71 284-356 71-141 (668)
322 PF12231 Rif1_N: Rap1-interact 75.5 87 0.0019 30.9 23.4 219 213-440 59-303 (372)
323 PF00790 VHS: VHS domain; Int 75.4 45 0.00097 27.5 10.5 72 412-494 43-118 (140)
324 KOG0301 Phospholipase A2-activ 75.2 68 0.0015 33.5 12.8 162 250-420 553-725 (745)
325 PF13001 Ecm29: Proteasome sta 74.8 49 0.0011 34.2 12.3 174 83-271 249-444 (501)
326 PF04499 SAPS: SIT4 phosphatas 74.0 32 0.0007 35.1 10.5 84 359-442 53-150 (475)
327 cd00197 VHS_ENTH_ANTH VHS, ENT 73.5 21 0.00046 28.2 7.5 71 412-493 38-114 (115)
328 KOG2199 Signal transducing ada 71.0 45 0.00098 32.3 9.8 72 369-440 46-118 (462)
329 PF04821 TIMELESS: Timeless pr 69.5 98 0.0021 28.8 16.7 188 68-314 10-210 (266)
330 KOG1988 Uncharacterized conser 69.1 1.5E+02 0.0033 32.1 13.9 251 74-355 27-281 (970)
331 cd03565 VHS_Tom1 VHS domain fa 69.0 59 0.0013 26.9 9.3 93 339-440 18-115 (141)
332 smart00802 UME Domain in UVSB 68.9 28 0.0006 27.2 6.8 80 325-409 11-95 (107)
333 KOG2549 Transcription initiati 68.9 60 0.0013 33.1 10.7 124 72-208 208-348 (576)
334 KOG2213 Apoptosis inhibitor 5/ 68.6 1.2E+02 0.0026 29.6 20.1 220 170-407 37-280 (460)
335 PF11229 DUF3028: Protein of u 68.4 1.4E+02 0.0031 30.3 17.6 143 339-496 209-355 (589)
336 smart00509 TFS2N Domain in the 68.4 24 0.00053 25.4 6.1 35 458-492 35-69 (75)
337 cd08050 TAF6 TATA Binding Prot 68.3 49 0.0011 32.2 10.1 112 240-353 209-338 (343)
338 KOG2073 SAP family cell cycle 67.7 2E+02 0.0043 31.7 15.9 177 240-424 189-378 (838)
339 KOG2038 CAATT-binding transcri 67.6 1.8E+02 0.0039 31.2 17.6 103 117-230 307-410 (988)
340 KOG0392 SNF2 family DNA-depend 67.2 59 0.0013 36.7 10.9 178 214-399 143-327 (1549)
341 PF08064 UME: UME (NUC010) dom 66.8 32 0.0007 26.8 7.0 80 325-409 11-95 (107)
342 PF08767 CRM1_C: CRM1 C termin 66.1 1.3E+02 0.0028 29.0 14.2 180 299-495 43-245 (319)
343 PLN03205 ATR interacting prote 65.5 1.4E+02 0.0031 29.2 12.4 160 240-400 322-519 (652)
344 PF00790 VHS: VHS domain; Int 65.3 77 0.0017 26.1 9.8 73 158-230 43-119 (140)
345 PF04869 Uso1_p115_head: Uso1 64.6 1.3E+02 0.0029 28.7 14.6 145 254-398 51-232 (312)
346 PF08389 Xpo1: Exportin 1-like 64.3 40 0.00088 27.7 7.8 63 241-307 82-148 (148)
347 smart00567 EZ_HEAT E-Z type HE 63.8 12 0.00026 21.1 3.1 14 341-354 2-15 (30)
348 PF08711 Med26: TFIIS helical 63.1 21 0.00045 23.6 4.6 35 458-492 13-48 (53)
349 cd00197 VHS_ENTH_ANTH VHS, ENT 62.8 42 0.00091 26.4 7.2 70 369-438 38-113 (115)
350 PF12783 Sec7_N: Guanine nucle 62.8 70 0.0015 27.3 9.1 110 86-199 37-159 (168)
351 KOG1788 Uncharacterized conser 62.3 1.9E+02 0.0041 32.4 13.2 261 92-378 663-960 (2799)
352 PF11791 Aconitase_B_N: Aconit 61.9 59 0.0013 27.0 7.6 100 243-355 24-123 (154)
353 PF04821 TIMELESS: Timeless pr 60.9 1.4E+02 0.0031 27.7 13.5 60 382-441 134-209 (266)
354 PF09324 DUF1981: Domain of un 60.7 45 0.00099 24.8 6.5 66 409-490 15-84 (86)
355 KOG2073 SAP family cell cycle 60.3 72 0.0016 34.8 10.1 64 358-421 180-250 (838)
356 KOG2011 Sister chromatid cohes 60.3 2.4E+02 0.0052 31.7 14.0 135 339-494 300-435 (1048)
357 cd00183 TFIIS_I N-terminal dom 60.1 43 0.00094 24.1 6.1 35 458-492 37-71 (76)
358 PF04499 SAPS: SIT4 phosphatas 60.0 1.9E+02 0.0041 29.7 12.7 76 400-475 51-128 (475)
359 PF09324 DUF1981: Domain of un 59.6 16 0.00034 27.2 3.9 67 196-266 14-84 (86)
360 KOG1832 HIV-1 Vpr-binding prot 59.4 53 0.0011 35.5 8.6 159 105-273 592-776 (1516)
361 cd08050 TAF6 TATA Binding Prot 59.4 1.5E+02 0.0032 28.9 11.5 111 200-311 211-339 (343)
362 KOG1788 Uncharacterized conser 58.1 3.2E+02 0.0069 30.8 22.3 78 361-439 901-981 (2799)
363 KOG2149 Uncharacterized conser 57.9 95 0.002 30.4 9.5 113 327-442 60-172 (393)
364 cd03565 VHS_Tom1 VHS domain fa 57.6 41 0.00089 27.8 6.4 74 71-144 38-115 (141)
365 KOG1087 Cytosolic sorting prot 57.4 61 0.0013 32.8 8.6 95 335-439 15-111 (470)
366 KOG0301 Phospholipase A2-activ 57.1 2.6E+02 0.0056 29.5 16.3 156 129-293 558-726 (745)
367 PF09758 FPL: Uncharacterised 56.9 56 0.0012 27.2 6.9 123 146-268 15-147 (149)
368 PF12463 DUF3689: Protein of u 56.6 48 0.001 31.4 7.3 78 367-444 94-177 (303)
369 PF08713 DNA_alkylation: DNA a 56.5 1.3E+02 0.0029 26.5 10.3 138 244-407 54-193 (213)
370 PF08216 CTNNBL: Catenin-beta- 56.4 13 0.00027 28.9 2.9 41 387-429 65-105 (108)
371 PF08216 CTNNBL: Catenin-beta- 56.1 13 0.00029 28.8 3.0 42 133-175 64-105 (108)
372 KOG2149 Uncharacterized conser 54.7 1.3E+02 0.0029 29.4 10.0 132 284-420 59-191 (393)
373 PF08713 DNA_alkylation: DNA a 53.0 1.6E+02 0.0036 26.0 11.5 141 117-282 54-196 (213)
374 PF12054 DUF3535: Domain of un 52.9 1.2E+02 0.0025 30.8 9.9 79 85-168 101-179 (441)
375 KOG4524 Uncharacterized conser 50.9 47 0.001 36.2 6.9 96 239-336 801-900 (1014)
376 KOG3132 m3G-cap-specific nucle 50.4 9.8 0.00021 33.8 1.6 44 10-53 24-67 (325)
377 KOG2022 Nuclear transport rece 50.3 3.8E+02 0.0083 29.4 16.4 141 257-408 483-631 (982)
378 KOG2549 Transcription initiati 50.2 3E+02 0.0065 28.3 11.8 139 162-311 212-369 (576)
379 PF01417 ENTH: ENTH domain; I 50.2 1.1E+02 0.0024 24.5 7.7 99 379-495 14-122 (125)
380 KOG1087 Cytosolic sorting prot 47.9 74 0.0016 32.2 7.5 75 412-497 39-115 (470)
381 COG5110 RPN1 26S proteasome re 47.4 3.4E+02 0.0074 28.0 16.1 88 299-399 620-707 (881)
382 PF09758 FPL: Uncharacterised 46.8 21 0.00046 29.6 2.9 125 314-438 15-147 (149)
383 PF08389 Xpo1: Exportin 1-like 46.8 1.2E+02 0.0027 24.7 7.9 49 85-139 100-148 (148)
384 PF12463 DUF3689: Protein of u 46.6 2.6E+02 0.0057 26.5 13.4 79 240-318 94-179 (303)
385 KOG2213 Apoptosis inhibitor 5/ 46.6 3E+02 0.0064 27.1 12.4 54 297-356 38-91 (460)
386 PF12074 DUF3554: Domain of un 45.6 2.9E+02 0.0063 26.7 17.3 194 199-400 22-238 (339)
387 KOG2085 Serine/threonine prote 44.9 3.2E+02 0.007 27.0 13.8 84 147-231 167-250 (457)
388 PF06012 DUF908: Domain of Unk 44.4 94 0.002 30.0 7.6 60 106-165 255-324 (329)
389 KOG0803 Predicted E3 ubiquitin 43.9 5.5E+02 0.012 30.1 14.1 200 285-494 43-263 (1312)
390 PF06743 FAST_1: FAST kinase-l 43.1 96 0.0021 22.0 5.6 65 220-285 4-68 (71)
391 KOG2199 Signal transducing ada 42.1 78 0.0017 30.8 6.2 73 411-494 45-118 (462)
392 PF11791 Aconitase_B_N: Aconit 41.6 62 0.0014 26.9 4.8 46 343-399 80-125 (154)
393 KOG0803 Predicted E3 ubiquitin 41.6 6.5E+02 0.014 29.6 17.7 257 72-335 42-330 (1312)
394 PF03130 HEAT_PBS: PBS lyase H 40.9 17 0.00037 20.0 1.1 14 342-355 1-14 (27)
395 KOG2676 Uncharacterized conser 40.3 41 0.00088 32.2 4.1 63 135-197 376-440 (478)
396 PF01365 RYDR_ITPR: RIH domain 40.3 1E+02 0.0022 27.3 6.7 97 340-442 75-171 (207)
397 KOG4524 Uncharacterized conser 39.7 1.5E+02 0.0032 32.7 8.4 94 325-421 803-899 (1014)
398 PF06012 DUF908: Domain of Unk 39.2 1.4E+02 0.003 28.9 7.8 65 130-195 237-306 (329)
399 KOG1791 Uncharacterized conser 37.3 2.9E+02 0.0064 32.4 10.5 191 147-338 1429-1641(1758)
400 PF14666 RICTOR_M: Rapamycin-i 37.3 3.2E+02 0.0069 24.8 12.1 86 258-355 140-225 (226)
401 PF08623 TIP120: TATA-binding 36.4 1.4E+02 0.003 25.6 6.4 95 212-310 39-145 (169)
402 KOG1924 RhoA GTPase effector D 36.4 5.9E+02 0.013 27.7 13.4 142 341-490 207-360 (1102)
403 PF12765 Cohesin_HEAT: HEAT re 36.1 46 0.00099 20.8 2.6 26 464-489 17-42 (42)
404 KOG2085 Serine/threonine prote 35.4 4.6E+02 0.0099 26.0 13.5 236 189-442 167-416 (457)
405 PF12783 Sec7_N: Guanine nucle 34.5 2.9E+02 0.0062 23.4 10.6 79 277-356 67-147 (168)
406 KOG2005 26S proteasome regulat 34.4 6E+02 0.013 27.1 18.4 73 114-189 48-128 (878)
407 PF04510 DUF577: Family of unk 33.9 3.1E+02 0.0066 23.6 11.5 151 285-441 5-165 (174)
408 KOG2140 Uncharacterized conser 33.5 5.5E+02 0.012 26.4 10.7 58 369-432 239-296 (739)
409 PRK09169 hypothetical protein; 32.9 1.1E+03 0.023 29.6 27.7 14 254-267 329-342 (2316)
410 PF12397 U3snoRNP10: U3 small 32.1 2.6E+02 0.0056 22.1 10.4 72 239-314 4-76 (121)
411 smart00802 UME Domain in UVSB 31.9 1.8E+02 0.0039 22.7 5.9 68 114-186 11-83 (107)
412 PF08623 TIP120: TATA-binding 31.8 2.3E+02 0.0049 24.3 6.9 76 255-335 41-116 (169)
413 PF04510 DUF577: Family of unk 31.4 3.4E+02 0.0073 23.3 11.5 155 326-495 4-165 (174)
414 KOG2011 Sister chromatid cohes 31.4 3E+02 0.0065 31.0 9.3 101 375-490 294-395 (1048)
415 KOG2038 CAATT-binding transcri 31.2 7.2E+02 0.016 27.1 17.5 92 82-185 315-408 (988)
416 PF07923 N1221: N1221-like pro 30.4 65 0.0014 30.5 3.9 78 367-444 59-169 (293)
417 PF08064 UME: UME (NUC010) dom 30.1 2E+02 0.0042 22.4 5.9 68 114-186 11-83 (107)
418 PF14663 RasGEF_N_2: Rapamycin 30.1 1.1E+02 0.0025 24.1 4.7 38 158-196 9-46 (115)
419 cd06561 AlkD_like A new struct 29.3 3.8E+02 0.0082 23.2 9.5 65 371-443 108-173 (197)
420 PF11229 DUF3028: Protein of u 29.0 6.5E+02 0.014 25.9 19.0 232 157-397 97-353 (589)
421 PF08767 CRM1_C: CRM1 C termin 27.9 5.5E+02 0.012 24.7 16.1 178 216-396 43-243 (319)
422 PF13925 Katanin_con80: con80 26.9 3.7E+02 0.008 22.8 7.6 73 198-271 27-99 (164)
423 cd06561 AlkD_like A new struct 26.6 2E+02 0.0042 25.1 6.2 74 286-366 108-181 (197)
424 PF12397 U3snoRNP10: U3 small 26.6 3.2E+02 0.007 21.6 9.3 67 115-187 7-75 (121)
425 PF14663 RasGEF_N_2: Rapamycin 26.3 1.3E+02 0.0029 23.8 4.4 39 115-155 9-47 (115)
426 PF10257 RAI16-like: Retinoic 26.0 6.3E+02 0.014 24.7 12.2 139 276-417 2-177 (353)
427 cd03562 CID CID (CTD-Interacti 25.6 3.2E+02 0.007 21.2 7.4 87 212-307 17-103 (114)
428 PF07923 N1221: N1221-like pro 25.6 1.1E+02 0.0025 28.9 4.7 56 111-167 57-126 (293)
429 PF12030 DUF3517: Domain of un 25.3 6.3E+02 0.014 24.5 20.5 50 137-186 4-56 (337)
430 PF15178 TOM_sub5: Mitochondri 25.3 98 0.0021 19.6 2.7 20 18-37 9-29 (51)
431 PF14631 FancD2: Fanconi anaem 24.7 1.3E+03 0.027 27.8 21.3 108 283-397 431-542 (1426)
432 PF01365 RYDR_ITPR: RIH domain 23.3 2E+02 0.0043 25.5 5.6 78 298-379 76-153 (207)
433 PF04118 Dopey_N: Dopey, N-ter 22.4 6.9E+02 0.015 23.9 13.8 99 243-351 99-197 (307)
434 PF14631 FancD2: Fanconi anaem 21.8 1E+03 0.022 28.5 11.9 135 248-390 442-576 (1426)
435 PF04064 DUF384: Domain of unk 21.7 2.7E+02 0.0059 18.9 5.9 42 457-498 11-53 (58)
436 PF08454 RIH_assoc: RyR and IP 21.5 4E+02 0.0087 20.8 6.2 40 296-335 66-106 (109)
437 PF05997 Nop52: Nucleolar prot 21.3 3.6E+02 0.0078 24.2 6.8 68 75-144 4-72 (217)
438 KOG1791 Uncharacterized conser 21.0 1.5E+03 0.032 27.2 13.6 183 240-424 1438-1641(1758)
439 COG5537 IRR1 Cohesin [Cell div 20.8 1E+03 0.022 25.2 12.3 184 160-354 278-464 (740)
440 cd01882 BMS1 Bms1. Bms1 is an 20.3 36 0.00078 30.8 0.2 23 28-50 11-33 (225)
441 PF15573 Imm27: Immunity prote 20.2 5.1E+02 0.011 23.2 7.0 96 327-444 48-146 (259)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-88 Score=598.92 Aligned_cols=515 Identities=54% Similarity=0.833 Sum_probs=464.4
Q ss_pred CCccHHHhhhccC--CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCC
Q 009679 6 NARTEVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSD 83 (529)
Q Consensus 6 ~~~~~~~~~~~k~--~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~ 83 (529)
.+.++.|+.+||+ ++.++|+||+|+++++|+||+||+|.+.|||+.....+...+....-.++....+|.+.+.|.|+
T Consensus 4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~Sd 83 (526)
T COG5064 4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSD 83 (526)
T ss_pred ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhh
Confidence 4578899999998 47799999999999999999999999999998732222211111111122234689999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009679 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (529)
Q Consensus 84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (529)
|.+.|++|...+++++|.+.+||++.+++.|++|.+++++......-++++|+|+|+|+++++..++..++++|++|.++
T Consensus 84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 99999999999999999999999999999999999999995544367899999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCC-CCCchhhhhc
Q 009679 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 241 (529)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 241 (529)
++|.+++.+++++++|+|||++++++.+|+.+++.|++.+++.++..+ .+..+.+++.|+|+|||+++ |++....+..
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999543 36799999999999999998 8888888999
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009679 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (529)
Q Consensus 242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 321 (529)
.+|.|.+++.+.|+++..+|||++++|++.+.+.++.+++.|+.++|+++|.+++..++.+|++.+||++++++.+++.+
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC--
Q 009679 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 399 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~-- 399 (529)
++.|+++.+..+|.++ ...+|++|||+++|+++|+.++++.+++.+++|.|+++|...+..++++||||+.|.++++
T Consensus 324 I~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 324 INCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred eecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 9999999999999999 8899999999999999999999999999999999999999999999999999999999876
Q ss_pred CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCH
Q 009679 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479 (529)
Q Consensus 400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~ 479 (529)
-|+.++||++.|++++|+++|...+.++...+++++.++++.++..... +....|.|..++++.||++.|..+|.+.|.
T Consensus 403 ~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~ 481 (526)
T COG5064 403 RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNR 481 (526)
T ss_pred CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence 4799999999999999999999999999999999999999999876643 334568899999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009679 480 EIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF 528 (529)
Q Consensus 480 ~v~~~a~~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
++|.+|..||++||++||..|+ .|.+. +..|+|... ++.+|||
T Consensus 482 ~iy~KAYsIIe~fFgeeD~vd~lapet~--g~tftfg~~----~~~qg~f 525 (526)
T COG5064 482 TIYDKAYSIIEKFFGEEDAVDELAPETA--GNTFTFGSN----VNQQGNF 525 (526)
T ss_pred HHHHHHHHHHHHHcccchhhhhcCcccc--CCeeecCCC----ccccCCC
Confidence 9999999999999998876665 45543 348888765 3345555
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-86 Score=631.98 Aligned_cols=507 Identities=66% Similarity=1.021 Sum_probs=461.8
Q ss_pred cHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCCCHHH
Q 009679 9 TEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI 87 (529)
Q Consensus 9 ~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~ 87 (529)
...|+++||+ +++++|+||||++..+|+||+||++.+.|||+........+ ............+.++..+.|+++..
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~ 82 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDE--LLSDSQSQASNLELMLAALYSDDPQQ 82 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccc--ccchhHHHhhhhHHHHHHHhCCCHHH
Confidence 3456667776 69999999999999999999999999999999322111111 01111122234788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009679 88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167 (529)
Q Consensus 88 ~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 167 (529)
+..+...++++++.+.++++..++..|++|.|+++|...+++.++++|+|+|+||++++++.+..++++|++|.|+.++.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS 162 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence 99999999999999989999999999999999999987766999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHH
Q 009679 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246 (529)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L 246 (529)
+++..++++|+|+|+|++++++.+|+.++..|++.+|+.++..+....+.+++.|+|+|||+++ |.+.+..+..++|.|
T Consensus 163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966666789999999999999999 889999999999999
Q ss_pred HHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 009679 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (529)
Q Consensus 247 ~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 326 (529)
..++.+.|++|..++||+|+||++++++.++.+++.|+++.|+.+|.+.++.++.+|++++||+++|++.+++.+++.|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 406 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (529)
++.|..++...+...++++|||+|+||++|++++++.+++.|++|.|+++|+.++.++|++|+||++|++.+++++++.|
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 99999999855477799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 009679 407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486 (529)
Q Consensus 407 l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~ 486 (529)
|++.|++++|+++|...|++++.+++.+|++|++.++..... .+ |++..+|+++||+++++.||.|+|.++|++|.
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~---~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR---GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY 478 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc---cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence 999999999999999999999999999999999999987642 12 88999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCcC
Q 009679 487 KILETYWVEEDEDEPL-PPGDATQAGFGFAGNGLPVPSGGFNF 528 (529)
Q Consensus 487 ~il~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (529)
.||++||+.|+++++. |++ .+|+|..+ .|+++|||
T Consensus 479 ~II~~yf~~e~~~~~~~~~~----~~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 479 KIIDTYFSEEDDEDDQQPTT----SQFTFQVQ---APDGGFNF 514 (514)
T ss_pred HHHHHhcCCCcccccccccc----cccccCCC---CCCCCCCC
Confidence 9999999998655433 322 17777755 48899999
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=332.87 Aligned_cols=368 Identities=27% Similarity=0.427 Sum_probs=330.1
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009679 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
|.+|.++..|. ..++.+|++|+++|.+++++. ....+.+++.|.+|.|+.++.+++ .+++++|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 88999999997 556999999999999999986 677888999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
|+.+++.|+++.|+.++...+. .+..++.|+|.|+|.........-.-..+++.|..++ ++.|+.+...+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988654 7889999999999976521222223335788899999 8899999999999999999
Q ss_pred cCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHH
Q 009679 229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT 306 (529)
Q Consensus 229 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~ 306 (529)
.+. +........+++|.|+.+|.+.++.++..++++++|++.+++...+.+++.|+++.|..++. ++...++..|+|+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 887 44555667899999999999999999999999999999999999999999999999999998 5667799999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 385 (529)
|+||+.|+..+.+.+++.|++|.|+.+|++. +.++|++|+|+|+|++. ++++++.++++.|+++.++++|...|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 89999999999999998 689999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCC-------HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 386 KEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
..++.+|.|+...+. .....++-+.|+++.+-.|-.+++.++-..+...+.+.+..+
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999986542 234556778899999999988899899999998888887554
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-42 Score=306.24 Aligned_cols=366 Identities=25% Similarity=0.354 Sum_probs=319.7
Q ss_pred hccHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009679 70 LESLPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 70 ~~~l~~l~~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
-|.+|++++.+ ..+....+++|+++|.+++|+. ....+.+++.|.+|.++++|.+++ .+++.+++|+|+|++.+++.
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence 47899999999 4667779999999999999986 566778899999999999999998 89999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 149 NTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
+++.+++.|++..++.++.+ .+..+...+.|+|+|+|+....-.+.-.-...++.|.+++ ...|+++...|||++++
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 99999999999999999877 4468899999999999954311111111123678888888 88899999999999999
Q ss_pred hhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHH
Q 009679 227 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (529)
Q Consensus 227 l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~ 305 (529)
|+.+. .........++.+.|+.+|.+++..++..+++.++|+..+++...+.+++.|+++.+..+|+++...++..|||
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 99986 33344455788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCCh
Q 009679 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEF 382 (529)
Q Consensus 306 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~ 382 (529)
+++|+..++.++.+.+++.+++|.|+.+|.+. +-.++++|||+++|.+.+ -|+.+.++++.|++..|+++|.-.+.
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 99999999999999999999999999999998 999999999999999984 68999999999999999999999888
Q ss_pred hHHHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 383 EIKKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 383 ~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
++-+.++.++.|+...+.. ....++-+.|+++.+..+-.+.+..+-..+-..+..++
T Consensus 429 kiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 429 KIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred cchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 8999999999999876632 23344445899999999988888888777776666555
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.1e-40 Score=359.23 Aligned_cols=408 Identities=21% Similarity=0.252 Sum_probs=344.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009679 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
+-|.+|.++..|.++++..|..|+..+..++... ..+...+++.|++|.|+++|.+++++.+|++|+|+|++|+.++++
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 4479999999999999999999999998877653 457888999999999999998765479999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHH---HHHhcCChHHHH
Q 009679 149 NTRVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRD---LVLSNGALMPLL 205 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~---~~~~~~~i~~l~ 205 (529)
.+..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+ .....|++.+++
T Consensus 266 ~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll 345 (2102)
T PLN03200 266 AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYAL 345 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHH
Confidence 9999999999999999998655 34699999999999987543 111 123457777787
Q ss_pred HHhccchhHHHH----HHHHHHHhhhhcCC-CCCchh-------------------hhhchHHHHHHhhccCChHHHHHH
Q 009679 206 AQFNEHAKLSML----RNATWTLSNFCRGK-PQPLFE-------------------QTRPALPALERLIHSNDDEVLTDA 261 (529)
Q Consensus 206 ~~l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a 261 (529)
..+. ..+.... ..++|+|.+|++++ +..... ...++++.|+.++...+.+++.++
T Consensus 346 ~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 346 MVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 7773 3333332 35789999999987 333121 113566788899998999999999
Q ss_pred HHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009679 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (529)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 341 (529)
+|+|.+++.+..+..+.+.+.|+++.|+.+|.+++..++..|+++|++++.+++.++..+++.|++|.|+.+|.++ +.+
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~ 503 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQK 503 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHH
Confidence 9999999999888999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 342 IKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
++++|+|+|+|++.+ +++++.++ +.|+++.|+++|.++++++++.|+|+|.+++..++.+. ++.|+.+|
T Consensus 504 iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LL 573 (2102)
T PLN03200 504 AKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALL 573 (2102)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHh
Confidence 999999999999997 44455555 78999999999999999999999999999998776554 36678889
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009679 421 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 421 ~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 498 (529)
..+++.++..++.+|.+++...+.... ........||++.|.+|+.++++++|+.|.++|.+||.+..+
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999999886653221 122334579999999999999999999999999999986543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.1e-38 Score=343.05 Aligned_cols=416 Identities=19% Similarity=0.202 Sum_probs=368.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
+.++.|+..|...+.+.|..++++|..++..+ ....+.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999987654 566888899999999999999988 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|+.+| .+.+...+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 666889999999999999753
Q ss_pred CCCCc-----------------------------------h---hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009679 231 KPQPL-----------------------------------F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 231 ~~~~~-----------------------------------~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
..... . ....++++.|+.++.++++.++..++|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21100 0 012468999999999999999999999999999988
Q ss_pred chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
.+..+.++..|++++++.+|.+.+..++..++++|++++.+.. .+...+++.|+++.|+.+|.+. +.+++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999997443 4456678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH--HHHHHHcCChHHHHhccCCCCHHHHH
Q 009679 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIVT 429 (529)
Q Consensus 352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~~~l~~L~~lL~~~~~~v~~ 429 (529)
|++.. ++....+...|+++.|+++|.+++++.|+.|+|+|.+++.+.+.++ ..++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99997 5667778889999999999999999999999999999999876554 36777889999999999999988776
Q ss_pred H--HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009679 430 V--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 430 ~--~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
. ++++|..+.+..+... ...++|..+++..++++.|.....|.+|.++++|..+|+++..+.
T Consensus 799 ~~~al~~l~~l~~~~~~~~-----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN-----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC-----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 6 8999999988654433 245789999999999999977779999999999999999998754
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-29 Score=224.76 Aligned_cols=364 Identities=21% Similarity=0.271 Sum_probs=319.1
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009679 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (529)
Q Consensus 68 ~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~ 147 (529)
.++.++..++..+.++..++|..++.++.+++.. +.....+...|.+..+.++-++.+ ..+|..+..+|.+++. +.
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~ 198 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR 198 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence 4567888899888888999999999999999876 344556778999999999888888 8999999999999998 78
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhccchhHHHHHHHHHHHh
Q 009679 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLS 225 (529)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~ 225 (529)
++++.++.+|++|.|+.++.+.+..++..|+.+++||+.+.. .|+.+.+.+ .++.|+.++ .++++.++..+..+|.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998765 588888888 899999999 8889999999999999
Q ss_pred hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC-cchHHHHH
Q 009679 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPAL 304 (529)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~v~~~al 304 (529)
+++............+.+|.++++++++-.........|+.|++-++-. ...+++.|++.+|+.+|+..+ ++++..|.
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 9999876666677789999999999998888888888999999987643 356889999999999998864 55999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhH
Q 009679 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 384 (529)
.+|.|++...+.....+.+.|.+|.+..++.+. .-.++.+...+++.++.. ......+.+.|++|.|+.+..+.+.++
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence 999999998888899999999999999999998 889999999999988876 555678899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH------cCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 385 KKEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+..|+.+|.|++.. .++...+.+ .|+-..|.+++.+.+.-++..+.|.+..++...
T Consensus 434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999984 355555443 355677888888888888888999988888654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=225.12 Aligned_cols=404 Identities=22% Similarity=0.232 Sum_probs=330.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009679 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
+-+....+...+++.++.+|..+..++.+++-.. ...-.++..+++..|+.-+..+. .++|..++.|++|++.- ++
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~ 158 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DS 158 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-cc
Confidence 3356778888899999999999999999887532 33444556667776666555555 68999999999999984 77
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.+..+...|++.++.++-++.+..++.++..+|.|+... .+.|..+...|.++.|+.++ +..++.++..++.++++++
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhh
Confidence 888899999999999988889999999999999999744 45789999999999999999 8899999999999999998
Q ss_pred cCCCCCchhhh--hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009679 229 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (529)
Q Consensus 229 ~~~~~~~~~~~--~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~ 306 (529)
-.......... ..++|.|+.++.++++.++-.+..+|.+++.... +...++++|.+|.++++|+++........+.|
T Consensus 237 Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC 315 (550)
T KOG4224|consen 237 VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVAC 315 (550)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence 87633333333 3499999999999999999999999999997654 55679999999999999999988889999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 386 (529)
+.|++-+.- ....+.+.|++.+|+.+|....+.+++..|..+|.|++..+.+....+.++|.+|.++.++.++...++.
T Consensus 316 Irnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 316 IRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred HhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence 999987533 3345678999999999999885677999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh--
Q 009679 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-- 464 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-- 464 (529)
+...++..++.. .....+|.+.|+++.|+.++.+.+.+++..+..+|.|+...-+. |...++--
T Consensus 395 eisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~------------YarviEawd~ 460 (550)
T KOG4224|consen 395 EISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH------------YARVIEAWDH 460 (550)
T ss_pred HHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH------------HHHHHHHhcC
Confidence 999999999885 36778899999999999999999999999999999999765432 34444321
Q ss_pred ---chHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 465 ---EGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 465 ---g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
|.-..|.++..++.-.+...|.|-|..+.+
T Consensus 461 P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 461 PVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222234444444445555555555554443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=1.4e-24 Score=220.73 Aligned_cols=394 Identities=19% Similarity=0.186 Sum_probs=319.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
+++-..++.++ .+...++..|.+++.. ......+...|+++.|+++|.+++ .++...++.+|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 34444444443 4445677888888743 355667889999999999999988 8999999999999998 78899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009679 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (529)
.+.|+++.|.+++.+++.+++..++++|.|++.+.. .|..+...|++|.|+.+|.. +..+..++.+|.+++.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999997765 69999999999999999942 34556788999999998765
Q ss_pred CchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009679 234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
.......+++|.+++++. .+++.+...+++.+.|++.+.. +.+.+.+.++++.|+......... ..+.++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHh
Confidence 666666789999998765 4577788888999999998764 557888888999999887554332 24578889988
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHH
Q 009679 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAW 390 (529)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~ 390 (529)
+.+.... .+. +.+..|+.++..+.+.+...++..+|+|+...+.+....+-+.+++|.|.+.|..+ ++++..+++.
T Consensus 480 h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7644333 332 46777778887766889999999999999987555555555789999999999876 5689999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH
Q 009679 391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 468 (529)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 468 (529)
.++.++. ++.....+.+.|+++.|+++|.. .|.+++..++.+++.++...+.. ..++.+.+...
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~ 623 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPA 623 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHH
Confidence 9999987 67888999999999999999974 66889999999999999886542 55667889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009679 469 KIENLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 469 ~l~~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
.+..|.++.|++|+..|..+|+-.-+.|
T Consensus 624 ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 624 YLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988877766554443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=1.4e-24 Score=220.78 Aligned_cols=365 Identities=19% Similarity=0.215 Sum_probs=304.5
Q ss_pred hhhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009679 67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 67 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~ 146 (529)
..+-+.++.|++.|.+++.++...++..|.++.-. ..+...+.+.|+++.|.+++.+++ .+++..++++|.|++. +
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d 361 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-D 361 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-C
Confidence 34457899999999999999999999999997543 456788899999999999999988 8999999999999999 7
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
++.+..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+. ..|..+...++++.+++++..+++..+...+++++.|
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 89999999999999999999864 46677999999999865 4789999999999999998677777777888999999
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHH
Q 009679 227 FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPAL 304 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al 304 (529)
++............++++.|+...-. .|+- .+..+.|++.++......+. +.+..|+.++.. ++++....++
T Consensus 439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~L 512 (708)
T PF05804_consen 439 LALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECL 512 (708)
T ss_pred HhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHH
Confidence 99987555555666888888876543 3433 34588999988754433333 577777788766 4678899999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--C
Q 009679 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--E 381 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~ 381 (529)
++|+|+...+......+-+.+++|++...|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.+|... |
T Consensus 513 GiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeD 591 (708)
T PF05804_consen 513 GILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQED 591 (708)
T ss_pred HHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCch
Confidence 9999999877677776778899999999997652 457899999999999875 77777888999999999999885 7
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009679 382 FEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 447 (529)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~ 447 (529)
.++....++++..+..+. +.+..++ +.+++..|++++++.++.++..|-.+|.-+...++.+..
T Consensus 592 dE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ 656 (708)
T PF05804_consen 592 DEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE 656 (708)
T ss_pred HHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 899999999999999974 4555554 468999999999999999999999999999988876643
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.4e-20 Score=181.86 Aligned_cols=391 Identities=19% Similarity=0.285 Sum_probs=315.7
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.+..|+..|+.. |+..|++|+..++.+++..+.+....+--..++|.|+.+|+.+.+.++...|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 577888889865 9999999999999999987666665555567899999999999889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
..+++.++||.|+.-|.. +..++.++++.+|-.|+.+.+ ..+++.|++..++..| +-.+..+++.|+.+.+|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986655 889999999999999998766 3678999999999999 77789999999999999999
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCC----CcchHHH
Q 009679 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHP----SPSVLIP 302 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~ 302 (529)
.-+...+..+...+|.|..+|+..|....+.+|-++.++++. .++..+.+...|++....+++.-. +..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 887788888899999999999999999999999999999853 557778888999999999998654 3345667
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-------------ch-hHHHHHH---------------------
Q 009679 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KK-SIKKEAC--------------------- 347 (529)
Q Consensus 303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------------~~-~v~~~a~--------------------- 347 (529)
.++.+..++.+++-....++..++...+..+|.... .+ ++-...+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 888999999988877777888888888877774421 00 0000000
Q ss_pred ------------------------------HHHH-------------HHh---------cCCHHHHHHHHHcCCHHHHHH
Q 009679 348 ------------------------------WTIS-------------NIT---------AGNVNQIQAIIEAGIIGPLVN 375 (529)
Q Consensus 348 ------------------------------~~L~-------------nl~---------~~~~~~~~~l~~~~~l~~L~~ 375 (529)
..+. +.- ...|+..+.++. .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 0111 000 011233333333 38999999
Q ss_pred HHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009679 376 LLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGG 453 (529)
Q Consensus 376 ~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~ 453 (529)
++.+. ++.||..++.||..+....+.+.+..++.. .+-..+-.+|.++|..|+..+|.....|++.-..
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd--------- 633 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD--------- 633 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence 99886 999999999999999999888888777655 4456777899999999999999999988876543
Q ss_pred cchHHHHHHhhchHHHHHHHhcCCC
Q 009679 454 VNLFAQAIDDAEGLEKIENLQSHDN 478 (529)
Q Consensus 454 ~~~~~~~i~~~g~~~~l~~L~~~~~ 478 (529)
.|...|.+.|.+..++.|....+
T Consensus 634 --~F~~~F~REGV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 634 --TFSPSFRREGVFHAVKQLSVDSN 656 (1051)
T ss_pred --HhhhhHhhhhHHHHHHHHhccCC
Confidence 37888999999999999976433
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=3.8e-18 Score=169.83 Aligned_cols=367 Identities=20% Similarity=0.224 Sum_probs=282.6
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--C 191 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~ 191 (529)
--+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+++.+++.+|+|+|.||...... .
T Consensus 233 ~~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 34688899999888 99999999999999999999999999999999999999999999999999999999965544 6
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc--------------CChHH
Q 009679 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEV 257 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v 257 (529)
+-.+.+.+.++.++.+|....|.++++.+..+|+||+..+ ..........+..|...+-. .+.++
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 7788899999999999987789999999999999999984 44445556666666544421 13678
Q ss_pred HHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCC------CCcchHHHHHHHHHHhhcCChh-----h--------
Q 009679 258 LTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM-----Q-------- 317 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~-----~-------- 317 (529)
..++..||.|++....+..+.+.+ .|++..|+..+.+ .+....+.|+-++.|+...-.. .
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 899999999999866555555544 4889999888753 3455677788888888642210 0
Q ss_pred ------------------HHH----------------------HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 009679 318 ------------------TQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (529)
Q Consensus 318 ------------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 357 (529)
... +.+..++..-+.+|....++.+.+.++.+|-|++++.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 000 1112234444455544436788899999999999952
Q ss_pred ----HHHHHHH-HHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC------HH
Q 009679 358 ----VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PR 426 (529)
Q Consensus 358 ----~~~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~------~~ 426 (529)
......+ .+..++|.|+++|..++.+|.+.++.+|.|++.+. .. +.++-.++++.|++.|.... .+
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 2233344 46789999999999999999999999999999853 33 44455889999999997533 57
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc-CCCHHHHHHHHHHHHhhCCCCC
Q 009679 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~ 497 (529)
++..++..|.+++...... ..-+-+.+|+++|..+.. ..++++.+.|..++..++...+
T Consensus 628 tv~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999665432 334446889999998854 4667899999999999988654
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=1.2e-15 Score=154.56 Aligned_cols=399 Identities=18% Similarity=0.205 Sum_probs=298.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
+.++.+|++.+.+....++..|.+++... .+... ..+..+.|...|.+++ +.+|..+++.|.+++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34888899888888888899999998653 22222 4567889999999998 9999999999999999777777888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009679 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (529)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999877654 5577778888888888 445667788899999999887633
Q ss_pred C-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC--c---chH-HHHHHH
Q 009679 234 P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--P---SVL-IPALRT 306 (529)
Q Consensus 234 ~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~---~v~-~~al~~ 306 (529)
. ......|+++.++..+.++|.-++.+++..|..++.. +...+.+.+.|+++.|+.++.+.. + .+. ...+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2 3334468999999999999999999999999999994 455688999999999999996642 2 222 234477
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHHhcC
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAG-----IIGPLVNLLLNA 380 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-----~l~~L~~~l~~~ 380 (529)
.++++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ ...+ ++..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 8888875443332211 23555666777777 899999999999999975 5666666 3322 344555555566
Q ss_pred ChhHHHHHHHHHHHHhcCCCH---HHHHHH-------HHcCChH-HHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcC
Q 009679 381 EFEIKKEAAWAISNATSGGSN---EQIKFL-------VSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMG 449 (529)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~~~---~~~~~l-------~~~~~l~-~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~ 449 (529)
..++|..++.++.++....+. +.+..+ ...+... .+..+++.+=++++..++..|..++...-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg----- 424 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG----- 424 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence 778999999999999665432 111111 1233444 888899988899999999999999866421
Q ss_pred CCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 450 NTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 450 ~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
...+....|.++.+-+=....+++..+.=..++..+...
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 244555566666665545556777777777777777643
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.79 E-value=7.9e-16 Score=155.81 Aligned_cols=368 Identities=17% Similarity=0.183 Sum_probs=283.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009679 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
+.+...|++.+ .+....++.+|..+.... ..... ..+..+.|...|.++++.+|..+++.|++++.++......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34788888776 777788888999888732 22221 446779999999999999999999999999988887778888
Q ss_pred hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH
Q 009679 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276 (529)
Q Consensus 197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~ 276 (529)
+.++++.++.++ .+++..+...|+.+|..++...+........+.++.|..++...++.++..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 899999999999 8889999999999999999876444444445668889999988888999999999999999999888
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh-----HHHHHHHHHH
Q 009679 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS 351 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~~~L~ 351 (529)
..+.+.|+++.++..+.+++.-++..++.+|..++. .+...+.+.+.|+++.|..++.+..... .-.......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999888899999999999999 6777888999999999999996652222 1223346677
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHH-HHc-----CChHHHHhccCCCCH
Q 009679 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-----GCIKPLCDLLNCPDP 425 (529)
Q Consensus 352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~~~ 425 (529)
+++...+..+..... .++..+.+++.+.|+..+..|..+++.++. +.+....| ... .++..+.........
T Consensus 275 ~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 777754554433332 367777788888899999999999999986 45665555 322 236666666777888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhc--hHH-HHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009679 426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 426 ~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g--~~~-~l~~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
+++..++.+|.+++......... .-.+.....++..+ -.. .+..+...+=+|++-.+..++...+...
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~---~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN---DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 99999999999998765431100 00011122222222 233 6677788888999999999999887754
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=5e-17 Score=161.94 Aligned_cols=363 Identities=20% Similarity=0.244 Sum_probs=276.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh--h
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--N 149 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~ 149 (529)
.+|+.+.+|.+.++.+|..|+..+..+.. .++.....+.+.|.|+.|+.+|.+.. .+++..|+++|.|+..+... +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 68999999999999999999988888654 44555667778999999999999999 99999999999999997765 7
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------------chhHH
Q 009679 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------------HAKLS 215 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-------------~~~~~ 215 (529)
.-.+.+.++|+.++++|+. .|.++++.+..+|+||+..+ .++..++. ..+..|...+.. ..+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888899999999999987 89999999999999999773 35444443 456666554421 11367
Q ss_pred HHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc------cCChHHHHHHHHHHHHhccCCch-----h-------
Q 009679 216 MLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND-----K------- 275 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~L~~l~~~~~~-----~------- 275 (529)
+..++..+|.|++... ....+....|.+..|+..++ ..|..-.+++.-.+.|++..-.. .
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8999999999999865 23334456788888887776 23666778888888888742210 0
Q ss_pred -------------------HHH----------------------HHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcC
Q 009679 276 -------------------IQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 276 -------------------~~~----------------------~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~ 313 (529)
... +....++..-+.+| .+.+..+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 000 11112333323333 334567888999999999987
Q ss_pred Chhh----HHHH-HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------Ch
Q 009679 314 DDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EF 382 (529)
Q Consensus 314 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~------~~ 382 (529)
.... +..+ .+..+++.|+.+|..+ +..+.+.++.+|.|++.+ .. .+.++....++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 6422 3333 4778999999999999 999999999999999987 33 35566688999999999875 35
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009679 383 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 383 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~ 442 (529)
++...+|.+|.|++.. +....+-+.+.+.++.|+-+.++. ++++.+++...|..|=.+.
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999975 568888899999999999988764 4577777777777665443
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.6e-15 Score=154.03 Aligned_cols=388 Identities=15% Similarity=0.153 Sum_probs=272.6
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCh
Q 009679 28 RREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPP 106 (529)
Q Consensus 28 ~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~ 106 (529)
-|+-.+|.+||.-.. .|++-.... ++ ..-..++..+. ...+.+++.-+..+..+++..-+.
T Consensus 53 ~Rq~aaVl~Rkl~~~--~w~~l~~e~--------~~-------siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 53 VRQLAAVLLRKLLTK--HWSRLSAEV--------QQ-------SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred HHHHHHHHHHHHHHH--HhhcCCHHH--------HH-------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 367788888876433 555443211 11 01234555554 456789999999999988765211
Q ss_pred hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009679 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (529)
Q Consensus 107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (529)
--.++++.|++..++++ +..|+.|+.+|..+...-...-...+ ..+.+.|.+.+.+++..+|..++++++.++.
T Consensus 115 ----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 ----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred ----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 22346777777788888 99999999999999873222211111 0234666667777766699999999999985
Q ss_pred CCc---hhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHH
Q 009679 187 DSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVL 258 (529)
Q Consensus 187 ~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~ 258 (529)
..+ ..++.+. ..+|.++..+. ...+......++.+|..|....|..-......++.....+..+. ++.+|
T Consensus 189 ~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R 266 (1075)
T KOG2171|consen 189 YLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR 266 (1075)
T ss_pred HhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH
Confidence 442 2222222 35666777664 34466667888888888888876666666677777777777655 67888
Q ss_pred HHHHHHHHHhccCCchhHHH---------------------------------------------HHH------------
Q 009679 259 TDACWALSYLSDGTNDKIQA---------------------------------------------VIE------------ 281 (529)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~---------------------------------------------~~~------------ 281 (529)
..++.+|..++...+...+. .++
T Consensus 267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~ 346 (1075)
T KOG2171|consen 267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL 346 (1075)
T ss_pred HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence 88888888776542111110 000
Q ss_pred hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009679 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (529)
Q Consensus 282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 361 (529)
.-+++.+-.++.++++..|..++.+|+.++.|+.......++ .+++.++..|+++ ++.||..||.+++.++..-...+
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence 013444555667888889999999999999999988777665 7899999999999 99999999999999998655555
Q ss_pred HHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH-HHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 362 QAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 362 ~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
+.-...-+.|.|+..+.+. +++|+..|+.++.|++..+..+.+.... .+++. .|..++.++.+.+++.++.+|..+.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5555566888999999886 7799999999999999987766554322 24566 5555667788899999999999988
Q ss_pred Hhhhh
Q 009679 440 KAGEA 444 (529)
Q Consensus 440 ~~~~~ 444 (529)
...+.
T Consensus 504 ~AA~~ 508 (1075)
T KOG2171|consen 504 DAAQE 508 (1075)
T ss_pred HHHhh
Confidence 77653
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.75 E-value=3.4e-16 Score=144.43 Aligned_cols=381 Identities=16% Similarity=0.141 Sum_probs=273.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009679 82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~--~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (529)
..+..+...+..++.+....+ ++.....-++.+++..|.+..++++ .++..++.++|+|++..+.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666666666655322 1112233356788888888888887 8999999999999999999999999999997
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCC
Q 009679 160 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 160 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
..++.+|+. .+.+....+...|.|...++...+..+.+.|+++.|...+. ...+..........+.++..-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888887764 23577788889999999999999999999999999888874 2334443344333333333221
Q ss_pred C--CCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCc-------chH
Q 009679 232 P--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSP-------SVL 300 (529)
Q Consensus 232 ~--~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~-------~v~ 300 (529)
. -..+.....+.-.+++++.+ ..+++...+...+.+.++++.-. -.+.+.|.+..++.+++. +.. ...
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 0 11222234455566666654 36778888899999998876544 347778999999999865 221 123
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009679 301 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 301 ~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
..++....-+..|++ ..+.+...+ ++..+..++.+. +....-.+..+|+|+++. ++.+.++++.+++..|++++..
T Consensus 291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556544 445565555 899999999998 999999999999999998 5667788899999999999875
Q ss_pred -----CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCcc
Q 009679 380 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 454 (529)
Q Consensus 380 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~ 454 (529)
++.+++..++.||.|+.... .....+...|+.+.++..++...|.+....++.++.+...-++.
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--------- 436 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--------- 436 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence 36788999999999998743 45566788999999999999999999999999998776554422
Q ss_pred chHHHHHHhhchHHHHHHHhcCCCHH
Q 009679 455 NLFAQAIDDAEGLEKIENLQSHDNTE 480 (529)
Q Consensus 455 ~~~~~~i~~~g~~~~l~~L~~~~~~~ 480 (529)
.+++...-..+++|.....+++-.
T Consensus 437 --a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 437 --ACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred --HHHHhcCHHHHHHHHHhhhCCccc
Confidence 233333334455666666655533
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-14 Score=136.17 Aligned_cols=360 Identities=15% Similarity=0.164 Sum_probs=280.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+.-++++|..++.++.......|.++. .- .++...+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLS-IF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhh-hh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 4678889999888888888888888864 33 456778889999999999999999 9999999999999999 678889
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.++..|.+|.|..++.+.. -...|+..+..++-++. .+.++....+++.+++.+..+.+..+-.......-|+|.++
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 9999999999999997643 23457777888876654 68888888999999988867777777777777778899887
Q ss_pred CCCchhhhhchHHHHHHh-hccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHH
Q 009679 232 PQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN 309 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~ 309 (529)
...+.......+..|... +...|+-+ ...+.+++.+.......+++ .+..|..++.. +++.....|+++++|
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 666666667777776654 44555543 34577888877655455554 35556666654 456788899999999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHH
Q 009679 310 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKK 386 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 386 (529)
+.-..-.+...+-+.+++|++...|...- ..++....+.+++.++.. ......+..+++++.++++|+.. |.+...
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 99877777777778899999999997642 345777778888888775 45555566889999999999874 778888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009679 387 EAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 447 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~ 447 (529)
..+++...+..+ ...+.+++ +...-..|++++++.+.+++.+|-.+|..+...+..+.+
T Consensus 611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 899999999886 24445554 446678899999999999999999999988887766554
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=1.5e-15 Score=157.89 Aligned_cols=363 Identities=19% Similarity=0.195 Sum_probs=275.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
...+..++...|. ..-.+.|..+.+. ......+...|.+|.|+++|.-++ +.+.+..|-.+|.||....++..
T Consensus 199 s~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 199 SNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred hhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 3355556666555 4556666666543 355677889999999999997554 25788999999999998777665
Q ss_pred HHHHhCCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--
Q 009679 151 RVVIDHGAVPIFVR----------LLSS-----PTDDVRE---QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-- 210 (529)
Q Consensus 151 ~~~~~~g~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-- 210 (529)
..-.+..++..|-+ .+.. .+..+.. .|+.+|..++.+ .+.|..+.+.|++..+-.++.-
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444344443332 2221 1222222 455556665544 5689999999999998887741
Q ss_pred ---------chhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-
Q 009679 211 ---------HAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA- 278 (529)
Q Consensus 211 ---------~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~- 278 (529)
.....+++++..+|.||..++. ........+++..++..|.+..+++..-....|.||+...+.....
T Consensus 353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkv 432 (2195)
T KOG2122|consen 353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKV 432 (2195)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHH
Confidence 1245789999999999999982 2333445899999999999888899988999999999665555444
Q ss_pred HHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhccCC---chhHHHHHHHHHHHH
Q 009679 279 VIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNI 353 (529)
Q Consensus 279 ~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl 353 (529)
+-+.|-+..|+.. |....+......+.+|+||+.++.+....+- -.|++.+|+.+|.... .-.|...|..+|.|+
T Consensus 433 LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 433 LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 4455878888776 4556667889999999999988776655543 4589999999996541 345667777888877
Q ss_pred hc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH
Q 009679 354 TA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 430 (529)
Q Consensus 354 ~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~ 430 (529)
.. .+..+++.+.+++++..|+..|++....+..++|.+|+||+.. +++..++|++.|.+..|..++++.+..+..-
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G 591 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG 591 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence 65 5677888888999999999999999999999999999999987 5688899999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 009679 431 CLEGLENILKAG 442 (529)
Q Consensus 431 ~l~aL~~l~~~~ 442 (529)
...+|.|++..-
T Consensus 592 SaaALrNLln~R 603 (2195)
T KOG2122|consen 592 SAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHHhcCC
Confidence 999999999765
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.3e-14 Score=128.43 Aligned_cols=318 Identities=15% Similarity=0.181 Sum_probs=250.0
Q ss_pred hcCChHHHHHhh---cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009679 112 QSGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG 186 (529)
Q Consensus 112 ~~g~i~~Li~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 186 (529)
..|..+.++.++ .+++ ..+-..++.+|..+..+.|+ +.+..++..++.+|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555444433 3444 67888899999888886665 4567788999998865 678888888888888888
Q ss_pred CCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-c---------hhhhhchHHHHHHhhccC-Ch
Q 009679 187 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-L---------FEQTRPALPALERLIHSN-DD 255 (529)
Q Consensus 187 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~---------~~~~~~~l~~L~~ll~~~-d~ 255 (529)
.+...|+.+++.++++.+...|.......+.+.++|++..|...+... . ...-.+++..|+..++-. ||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999998765221 1 112245677888888744 79
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 009679 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331 (529)
Q Consensus 256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 331 (529)
.+...++.+|..|+-.+ +..+.+.+.|++..|+.++.+.+. .....++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 99999999999999765 456779999999999999987432 244678888888875 677788899999999999
Q ss_pred HHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009679 332 DLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV 408 (529)
Q Consensus 332 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 408 (529)
.++ .+..+|.|..+++.+++-++--+|++-..+++.|+-...++.|+.. ...++++|||.+.|+...+ .++...++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence 877 4444889999999999999998899999999999999999999875 4579999999999999874 46767766
Q ss_pred HcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009679 409 SQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 409 ~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l 438 (529)
.. +++.|+..-+..++.....+-.+|.-+
T Consensus 414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 414 AN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 65 477777777777777777777777655
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.3e-14 Score=134.14 Aligned_cols=379 Identities=17% Similarity=0.132 Sum_probs=281.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009679 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (529)
Q Consensus 83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (529)
..+.+...|+..|.+++.. ...-..+...+++..|++.|...+ .++.......|..++- -.+++..+.+.|++..|
T Consensus 275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL 350 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence 3455666777888887743 334456778899999999999988 7888888888988887 56788889999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhch
Q 009679 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 242 (529)
Q Consensus 163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 242 (529)
++++...+++++...+..+.|++.++. .|..++..|.+|.+..++..+... ..|...+..++.++....+.....+
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999998875 678888999999999999544332 3355667777777655556666889
Q ss_pred HHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHHH
Q 009679 243 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 243 l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
++.+.+.+-+ .+.+|-...+....|+|-+.. +.+.+++...+..|++.. ...++ . -...+.|++.+.......
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHH
Confidence 9988876553 456665555555567775542 346667766777777664 33332 2 345667777765544444
Q ss_pred HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcC
Q 009679 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~ 398 (529)
+++ .+.-|...++...+.....++..+++|+....-+-...+-+.+++|.+-..|..+ ..+++...+.+++.++.
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~- 578 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR- 578 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-
Confidence 443 4556666666654677888999999999986555555566788999999999876 56788888999999887
Q ss_pred CCHHHHHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC
Q 009679 399 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476 (529)
Q Consensus 399 ~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~ 476 (529)
+......+...++++.|+++|+. .|.+++..++..+..++..... ..-++.+...-..+..|+++
T Consensus 579 -d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 579 -DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD 645 (791)
T ss_pred -hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence 44677777888999999999974 5677877888888888776432 24566677777889999999
Q ss_pred CCHHHHHHHHHHHH
Q 009679 477 DNTEIYEKAVKILE 490 (529)
Q Consensus 477 ~~~~v~~~a~~il~ 490 (529)
.|.+|++-+...|.
T Consensus 646 kN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 646 KNAEIRKVCDNALD 659 (791)
T ss_pred ccHHHHHHHHHHHH
Confidence 99998876655443
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.8e-15 Score=146.68 Aligned_cols=359 Identities=18% Similarity=0.227 Sum_probs=231.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh-HHh---hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~-~~i---~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~ 146 (529)
+.+|.|.+.|.+++...+.-|..+|.++..... ...+ .+. -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 358999999999999999999999999875321 1111 010 1236899999999998 999999999998887643
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 225 (529)
+.....-++ ..+..+..+-..++++||.+.+.++.-+....+. ..+- -.++++.++... ++.+..+.-.||....
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL 281 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence 333222222 3456677777779999999999999999865442 1111 123455555555 6678889999999999
Q ss_pred hhhcCCC--CCchhhhhchHHHHHHhhccCChHH--HH------------------------------------------
Q 009679 226 NFCRGKP--QPLFEQTRPALPALERLIHSNDDEV--LT------------------------------------------ 259 (529)
Q Consensus 226 ~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v--~~------------------------------------------ 259 (529)
.++...- .........++|.|+.-+.-.+.++ ..
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 9998861 1222345677777765443211110 00
Q ss_pred ----HHHHHHHHhccCCchhHHHHHHhCcH----HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 009679 260 ----DACWALSYLSDGTNDKIQAVIEAGVC----PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331 (529)
Q Consensus 260 ----~a~~~L~~l~~~~~~~~~~~~~~~~~----~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 331 (529)
..-|-|...+...-+....+....++ |.|-+.|.++.+.+++.++.++|.++.|.-...-.-+. .++|.++
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~ 440 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLL 440 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHH
Confidence 00122222221111112223333444 44555567789999999999999999876433221111 4789999
Q ss_pred HHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 009679 332 DLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 409 (529)
Q Consensus 332 ~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 409 (529)
.+|.+. .+-||.-+||+|+..+.- +.+.-+++.. ++..|+..+-+++.+|++.||.|+..+-..+.++-+.++-.
T Consensus 441 ~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 441 SLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred HHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 999998 999999999999998761 1121122222 55566666667888999999999999988777676666532
Q ss_pred cCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 410 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 410 ~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
++..|...+.....+-.....+|++.+...
T Consensus 518 --IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 518 --ILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred --HHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 455555555433333333445666666554
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=6e-14 Score=125.83 Aligned_cols=309 Identities=12% Similarity=0.124 Sum_probs=247.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009679 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (529)
+++...-+.++.+|..+.... ..+.+..+...++++|.... +.++....+.++..-+-.+..+++.+++.++++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 566677777777777765432 34566778888888886432 267888888888888888899999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 161 IFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.+.+.|.. ....+.....|++..+..+++ .....+...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99987766 344577788999999986553 23456777788999999997667899999999999999887
Q ss_pred CCCCchhhhhchHHHHHHhhccC-ChH---HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC--CCCcchHHHHH
Q 009679 231 KPQPLFEQTRPALPALERLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPAL 304 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~al 304 (529)
..........|++..|+.++.+. +.. ....++..|..|+-.++ ....+++.|+.+.++.++. ..+|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 65555566689999999999863 333 45678888888876654 5577999999999999873 36788999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
.+++-++-..+.....+++.|+-...++.|+ ++....+++.|||++.|++..+.++...++.. +++.|+......++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999885 44467899999999999999878877777765 678888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 009679 384 IKKEAAWAISNATS 397 (529)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (529)
....|..+|..+-.
T Consensus 431 ce~~akaALRDLGc 444 (461)
T KOG4199|consen 431 CEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHhcCc
Confidence 88888888887743
No 24
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=8.1e-15 Score=136.26 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=202.1
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
-++.|..+|.+++ ..++..|++.|..+.. ..+++.+..++.++++.+|..++|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4678889999988 8999999999988764 23467788889999999999999999998543211
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
...+++.|..++..+.++.++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+...
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~--- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE--- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence 11246677777558889999999999999997654222 123556677788888999999999999876421
Q ss_pred hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009679 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (529)
Q Consensus 275 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 354 (529)
..++.|+.+|.++++.++..|+.+||.+..+++ .+++.|+..|.+. ++.||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 367899999999999999999999999944333 3567799999988 9999999999999864
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHH
Q 009679 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLE 433 (529)
Q Consensus 355 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~ 433 (529)
. +. .+|.|+..+.+++ ++..|+.+|+++-. + ..++.|..+++ .+|+.++..+.+
T Consensus 221 ~--~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--KR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--hh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 2 32 7899999998765 67889999999854 2 25788888886 789999999988
Q ss_pred HHHH
Q 009679 434 GLEN 437 (529)
Q Consensus 434 aL~~ 437 (529)
+|..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8763
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.7e-13 Score=138.64 Aligned_cols=396 Identities=16% Similarity=0.178 Sum_probs=271.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.++.|...++ +.|+++|..|+..+|+++..- -+.+..-....+-..|+..+.++..+.+|...+.++..++...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 4667777776 789999999999999998752 2222222333455566666666555899999999999999844222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
. =.++++.|.+..+++++..|+.|+.+|+++...-.. .+..+.. +.+.+.+.+ .+.+..++..++.++..++.
T Consensus 115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence 0 124678888889999999999999999999743322 1111111 233334444 33333499999999988877
Q ss_pred CCC--CCchhhhhchHHHHHHhh----ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHH
Q 009679 230 GKP--QPLFEQTRPALPALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI 301 (529)
Q Consensus 230 ~~~--~~~~~~~~~~l~~L~~ll----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~ 301 (529)
..+ ..........+|.++..+ ..+|.+....++.+|..+....+......+. .++...+.+..+. +..+|.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence 653 333344566777666555 4567777888888998888776655444333 3444444444442 455666
Q ss_pred HHHHHHHHhhcCChh---------------------------------------------hHHHHH-----h-------c
Q 009679 302 PALRTVGNIVTGDDM---------------------------------------------QTQCII-----N-------H 324 (529)
Q Consensus 302 ~al~~L~~l~~~~~~---------------------------------------------~~~~~~-----~-------~ 324 (529)
.|+.+|..++...+. .....+ + .
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 666666665532100 000000 0 1
Q ss_pred CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH
Q 009679 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404 (529)
Q Consensus 325 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~ 404 (529)
-+++.+..++.++ ++.-|+++..+|+-++.|+++.+...++. +++.++..|.++++.||-.|+.|++.++..-.++..
T Consensus 348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 1355666777888 99999999999999999999988776654 899999999999999999999999999987666655
Q ss_pred HHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHH
Q 009679 405 KFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 483 (529)
Q Consensus 405 ~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~ 483 (529)
++ ....+++.|+..+++. ++.|...+..++-+++..+.+.. ..+|...+.+. ++..|..++.+.+++
T Consensus 426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-------l~pYLd~lm~~----~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-------LEPYLDGLMEK----KLLLLLQSSKPYVQE 493 (1075)
T ss_pred HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHH----HHHHHhcCCchhHHH
Confidence 55 4556788888888864 56899999999999998776543 33455554422 677778888888888
Q ss_pred HHHHHHH
Q 009679 484 KAVKILE 490 (529)
Q Consensus 484 ~a~~il~ 490 (529)
.+...|.
T Consensus 494 ~vvtaIa 500 (1075)
T KOG2171|consen 494 QAVTAIA 500 (1075)
T ss_pred HHHHHHH
Confidence 7766554
No 26
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=4.6e-14 Score=131.21 Aligned_cols=254 Identities=16% Similarity=0.125 Sum_probs=200.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.|+..|.+.+..++..++..|..+-. ..+++.+..++.+++ +.+|..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56789999999999999999999987632 235677888888888 99999999999998752211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 152 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
....++.|..+ +.++++.|+..++.+||+++...... ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11346778876 66789999999999999997443211 111344455556 66688999999999976532
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
...++.|+.++.++++.|+..++.+|+.+....+ .+++.|+..|.+.++.|+..|++.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3588999999999999999999999999843322 4567899999999999999999999996
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHHHHH
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA 389 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~ 389 (529)
-. + .+++.|+..|.++ + ++..++.+|+++.. +. .+|.|..++. .+|..++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 43 2 4688999999887 4 78889999998865 22 7889999997 67999999999
Q ss_pred HHHHH
Q 009679 390 WAISN 394 (529)
Q Consensus 390 ~aL~n 394 (529)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=3.7e-13 Score=124.66 Aligned_cols=400 Identities=13% Similarity=0.073 Sum_probs=284.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC---C---ChHHHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~---~---~~~v~~~a~~~L~~l~~ 144 (529)
+.++.+.+...|++.++-.+..++|.++...+ ++....+.+.|+-..+++.|+.. + +.+.-.-+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777778889999999999999987654 77788888999977777776531 1 24566677789999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009679 145 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (529)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 221 (529)
++.+.+..+++.|+++.|...+.- .+....+.++...+|+..- .....+...+......+++++.....+++...++
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999988754 6677778888777777632 2223455666677778888886666888888888
Q ss_pred HHHhhhhcCCCCCchhhhhchHHHHHHhhcc-CC-------hHHHHHHHHHHHHhccCCchhHHHHHHhC-cHHHHHHhc
Q 009679 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 292 (529)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL 292 (529)
..+...+.++.-.......|.+..+..+++. .+ -.....++....-+..+++ ..+.+...+ ++..+...+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence 9999888887444444456777777777764 21 1233444444444455543 445566555 899999999
Q ss_pred CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009679 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (529)
.+.+......+.-++||++..++ .+..+++.+++..|+.+|... .+.+++..++.+|.|++-. ......++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999555 555678889999999999542 1567788999999999985 34456788999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhccCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK 446 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~-v~~~~l~aL~~l~~~~~~~~ 446 (529)
+.+.++..++...|.+...-...+.=+... -+-....|.. ...++.|+..-+++|.. +.....+.+.-+++.....
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 999999999999888887777776655442 2212223322 24466777776666644 5555666666666553211
Q ss_pred hcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009679 447 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485 (529)
Q Consensus 447 ~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a 485 (529)
.+...+-+.||++.........+-..+..|
T Consensus 481 ---------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 ---------DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred ---------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 124445567888777777666555555554
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.61 E-value=4.6e-13 Score=145.50 Aligned_cols=275 Identities=16% Similarity=0.189 Sum_probs=220.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.|+..|.++++.+|..|+..|..+.. .+.++.|+..|.+++ +.+|..|+..|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 357899999999999999999999988632 246889999998888 9999999999988854211
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+.|...|.++++.+|..++.+|+.+.... ...++..| .+.++.++..++.+|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 2367788888899999999999999875221 23456677 78899999999999987521
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
.+.|..++.++++.|+..++.+|..+..... ..++.|..++.++++.++..|+..|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346778899999999999999999865432 2367888999999999999999999998
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 390 (529)
.... .+.+.+...|.++ ++.||..|+++|+.+.. ++ .++.|+.+|.+++..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235688889888 99999999999998743 22 5688999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009679 391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 436 (529)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~ 436 (529)
+|+.+. +++. ..+.|...+++.|+.|+..+..+|.
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999972 2323 3556778889999999999999886
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.4e-13 Score=132.09 Aligned_cols=349 Identities=13% Similarity=0.156 Sum_probs=237.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009679 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (529)
Q Consensus 76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 155 (529)
.+..+...++.++...-..+..+++... .+.. ..++|.|.++|.+++ ....+-|..+|..|+.++++.-+.-+.
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~w--pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGG---LQHW--PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccc---cccc--hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 3444555555555444444555554432 1111 347899999999988 788999999999999976654433211
Q ss_pred ----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 156 ----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 156 ----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.-.+|.++++.+++++.+|..|+.++..+.-.... ..... -.+++.+..+- .+.++++++++|.++..|..-
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHh
Confidence 13689999999999999999999999988754432 12111 12445555555 788999999999999999998
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCC------------
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPS------------ 296 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~------------ 296 (529)
.+........+++..+++..++.|++|...||.....++..+. ....+.. ..++|.|+.-+...+
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 8888788889999999999999999999999999999998763 2222221 155666655432110
Q ss_pred --------------------------------------------cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 009679 297 --------------------------------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (529)
Q Consensus 297 --------------------------------------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 332 (529)
+.+|..++.+|.-++.-.. +.++. -++|.|..
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~ 400 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKE 400 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHH
Confidence 2344443333333332111 11222 34566666
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcC
Q 009679 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQG 411 (529)
Q Consensus 333 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~ 411 (529)
.|.++ .+.+|+.++.+++.++.|.-...-.-+. .++|.|+.+|.++.+-||.-+||+|+..+...-.+ ..+++. .
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p 476 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P 476 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence 77777 8999999999999999874433222121 37899999999999999999999999987643211 113322 1
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++..|+..+-+++.+|+++++.++..+-+..
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 4455555555789999999999998776543
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.59 E-value=3.3e-12 Score=124.69 Aligned_cols=406 Identities=16% Similarity=0.109 Sum_probs=269.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
.++..+...+++....|..-..+++.+. +++...++..|.++.|..+++..+ .++.+.+.+.++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3444556778888888888888887764 555557899999999999998665 26777777778888888888888899
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 154 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.+.+.++.|+++|.+++ ..+++.++.++.++...++..- .......++..+..++ ..........-+...+++|..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 99999999999999988 8999999999999986654221 1122222344443333 223334445555556666665
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHH---HhccCCchhHH----HHHHhCcHH--HHHHhcCCCCcchHH
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLRHPSPSVLI 301 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~~~~~--~L~~lL~~~~~~v~~ 301 (529)
..........++...+.-++......++..++.+++ .+..+++.... ...+.|+.+ .+..++.+++...+.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 544444455677777777776677889999999999 66655443322 233445555 345556666666666
Q ss_pred HHHHHHHHhhcCCh-------------h----hHH----------------------------------HHHhcCChHHH
Q 009679 302 PALRTVGNIVTGDD-------------M----QTQ----------------------------------CIINHQALPCL 330 (529)
Q Consensus 302 ~al~~L~~l~~~~~-------------~----~~~----------------------------------~~~~~~~l~~L 330 (529)
.++.++-++..++- - ..+ ...+...++.+
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 66666666554320 0 000 00000111111
Q ss_pred HHHh----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCH
Q 009679 331 LDLL----------------------------------------------------TQNYKKSIKKEACWTISNITAGNV 358 (529)
Q Consensus 331 ~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~ 358 (529)
..++ ... +...+.+||.++-++++.-.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence 1111 111 33445555555555554211
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l 438 (529)
.....+-...+...|+.++..++..|+..+..+|+|+...-+ .....++..|+++.+.+++.+.++.++..++|+|+++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 111112235678899999999999999999999999987544 4556778999999999999999999999999999999
Q ss_pred HHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 439 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
+-.++... ...+-.-=+...|..+.++++..|++.+.+++.++...
T Consensus 489 ~f~~de~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 489 MFNCDEEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcchHHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 75443321 11111122356688899999999999999999998776
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=5.4e-13 Score=121.13 Aligned_cols=238 Identities=18% Similarity=0.222 Sum_probs=184.6
Q ss_pred hhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009679 239 TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 239 ~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
..+-+..|+.+|+ +.|+.++..++.++++.+..+. ....+.+.|+++.+..+|.++++.++..|+.+|.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 3567788999998 5689999999999999877654 4577888899999999999999999999999999998865543
Q ss_pred HHHHHhcCChHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009679 318 TQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
. .++. .++.+... +.++-+..++..+..+|.|++..+ +. +.++. +.++.++.+|..++..+|..++++|.|++
T Consensus 89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3 2343 35555554 444446789999999999998753 22 33342 37999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhc--CCCCccchHHHHHHhhc-hHHHHHH
Q 009679 397 SGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNM--GNTGGVNLFAQAIDDAE-GLEKIEN 472 (529)
Q Consensus 397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~g-~~~~l~~ 472 (529)
. ++...+.++..+++..|+.+++.. +.++...++..+.||...-.+.... ...........+|.+.+ .-++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 8 668889999999999999999875 6788899999999995443322110 01112344456676665 7889999
Q ss_pred HhcCCCHHHHHHH
Q 009679 473 LQSHDNTEIYEKA 485 (529)
Q Consensus 473 L~~~~~~~v~~~a 485 (529)
|..|+++||+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999764
No 32
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.55 E-value=2.6e-12 Score=125.43 Aligned_cols=371 Identities=15% Similarity=0.124 Sum_probs=250.0
Q ss_pred hhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009679 68 KKLESLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (529)
Q Consensus 68 ~~~~~l~~l~~~L~s~~--~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~ 145 (529)
-+.|.++.+...++..+ .+.+.+.+..+.....++ ......+.+.+.++.|+.+|.+.+...++...++++..+...
T Consensus 48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet 126 (678)
T KOG1293|consen 48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFET 126 (678)
T ss_pred hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhc
Confidence 35688999999888555 455556677777777765 677888999999999999999887567899999999999985
Q ss_pred ChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009679 146 TSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (529)
Q Consensus 146 ~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 223 (529)
++..-.... ...+++.+..++..+...+...-+....++++.. ..+-.+...|+.+.+.-++ ...+...+..+..+
T Consensus 127 ~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~ 204 (678)
T KOG1293|consen 127 SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLC 204 (678)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHH
Confidence 543333322 2345555555555344555555555556655544 4566666777666655555 55577788888888
Q ss_pred Hh---hhhcCCCCCchhhh-----hchHH--HHHHhhccCChHHHHHHHHHHHHhccCCchh----------------H-
Q 009679 224 LS---NFCRGKPQPLFEQT-----RPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDK----------------I- 276 (529)
Q Consensus 224 L~---~l~~~~~~~~~~~~-----~~~l~--~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~----------------~- 276 (529)
++ ++..+++....... .++.+ .+.+++++++..-+..++.++.++...+.+. +
T Consensus 205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~ 284 (678)
T KOG1293|consen 205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV 284 (678)
T ss_pred hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence 88 66666544433222 34444 3445666666666666666666554322000 0
Q ss_pred HH----------------------------------HHHhCcHHHHHHhc------------------------------
Q 009679 277 QA----------------------------------VIEAGVCPRLVELL------------------------------ 292 (529)
Q Consensus 277 ~~----------------------------------~~~~~~~~~L~~lL------------------------------ 292 (529)
+. ..+....+.+.+++
T Consensus 285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~ 364 (678)
T KOG1293|consen 285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG 364 (678)
T ss_pred HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence 00 00011111111111
Q ss_pred ----------------------CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009679 293 ----------------------RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 293 ----------------------~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
...+..++..|+.++-+++..-......+-...+...+++++..+ +..|...+..+|
T Consensus 365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai 443 (678)
T KOG1293|consen 365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAI 443 (678)
T ss_pred cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHH
Confidence 112233455555555555543332222233457889999999888 889999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH
Q 009679 351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 430 (529)
Q Consensus 351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~ 430 (529)
+|+.-........++..|++..+..++.+.++.++..+.|+|.++..+++......+...=....+..+..++++.|++.
T Consensus 444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq 523 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ 523 (678)
T ss_pred HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence 99998666677889999999999999999999999999999999999887666555555444566777888999999999
Q ss_pred HHHHHHHHHHhh
Q 009679 431 CLEGLENILKAG 442 (529)
Q Consensus 431 ~l~aL~~l~~~~ 442 (529)
++..|.|+....
T Consensus 524 ~fqllRNl~c~~ 535 (678)
T KOG1293|consen 524 CFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhhcCc
Confidence 999999998663
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.54 E-value=3.2e-12 Score=139.03 Aligned_cols=278 Identities=16% Similarity=0.200 Sum_probs=219.3
Q ss_pred hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009679 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (529)
..+.++.|+..|.+++ +.+|..|+..|..+.. .+.++.|...|.+++..+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 4457789999999998 9999999999998753 2467899999999999999999999998853221
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009679 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
..+.+...| .+.++.++..++.+|..+.... ...++..|.++|+.|+..++.+|..+..
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124566777 6688899999999888764221 2356788999999999999999997621
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
.+.|..++.++++.|+..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1346678999999999999999999865322 2367888999998 8999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009679 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431 (529)
Q Consensus 352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~ 431 (529)
.+... +. .++.++..|.++++.||..|+++|..+-. ...++.|..+|+++++.|+..+
T Consensus 801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHH
Confidence 98653 11 33567888999999999999999998742 1256889999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009679 432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 491 (529)
Q Consensus 432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~ 491 (529)
..+|..+ . +. ....+.|.....+++.+|+..|...|+.
T Consensus 859 ~~aL~~~-~-~~--------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRW-P-GD--------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcc-C-CC--------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999975 1 11 1124567778889999999999988763
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=2.1e-12 Score=117.25 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=163.1
Q ss_pred hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009679 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (529)
Q Consensus 111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (529)
.+.+-+..|+.+|+...+|.++..++.++++.+. .+..+..+.+.|+++.+..+|..+++.+++.|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 5667789999999976659999999999999887 78889999999999999999999999999999999999997765
Q ss_pred hHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009679 191 CRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 191 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
.+..+-. .++.++..+... -+..++..++.+|.+|+..... ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3444432 466666655333 4778889999999999876433 2334568999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcC
Q 009679 270 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~ 313 (529)
.++. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8875 456788889999999999775 677899999999999654
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=1.6e-12 Score=135.18 Aligned_cols=361 Identities=17% Similarity=0.216 Sum_probs=246.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..+.+.|.++++.++..|++.+.++.. .++++ .+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 56677778889999999999999998752 12222 36788899999988 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhh
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~ 228 (529)
.. .++.+..++.++++.++..|+.++..+ ..++.... ..++.++..|. ...++-.+..++.++..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 22 579999999889999999999999999 22221100 23444444442 5567788888888888877
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009679 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
...+.... ...+++.+..++++.++.|...++.++..+..... .-..+++.|..++.++++.++..++.+|.
T Consensus 221 ~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 221 PMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 65421110 05678888888888899999999999998876543 22367889999999888899999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHH
Q 009679 309 NIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKK 386 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~ 386 (529)
.++..... .+. .....+..+. ++ +..+|..++.+|..++. +.+... +++.|...+. .++++++.
T Consensus 293 ~l~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~ 358 (526)
T PF01602_consen 293 QLAQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRR 358 (526)
T ss_dssp HHCCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHH
T ss_pred Hhhcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhh
Confidence 99886521 222 2233344554 55 88999999999999985 344333 5667888884 44888999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhch
Q 009679 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 466 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 466 (529)
.++.+++.++....+ .... +++.+++++......+...+...+.+++...+..+ ...
T Consensus 359 ~~i~~I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~------ 415 (526)
T PF01602_consen 359 ELIKAIGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI------ 415 (526)
T ss_dssp HHHHHHHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH------
T ss_pred hHHHHHHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH------
Confidence 999999998864221 1111 35667777776666666666677777765543221 111
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHhhCCCC
Q 009679 467 LEKIE-NLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 467 ~~~l~-~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
+..+. .+..-.++++...+.|++.+|-+..
T Consensus 416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 416 LKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 22222 2234566777777788888776543
No 36
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.50 E-value=1.6e-12 Score=135.83 Aligned_cols=362 Identities=19% Similarity=0.197 Sum_probs=266.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP---TDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 118 ~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
.|..++...+ +.+.++-+..++. +++....+...|.++.|+++|..+ +.+.+..|-.+|.||....++....
T Consensus 201 sllsml~t~D----~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLGTDD----EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcccCC----HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 4555555555 5666777888887 778888888999999999999763 5688899999999999766543222
Q ss_pred HHhcCChHHHH---HHh-------c-cc------hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----
Q 009679 195 VLSNGALMPLL---AQF-------N-EH------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----- 252 (529)
Q Consensus 195 ~~~~~~i~~l~---~~l-------~-~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----- 252 (529)
-.+..++..|- ... . .. .+..-+..|+.+|..++.+......+..-|++..+..++.-
T Consensus 276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 11212222221 111 0 00 11122234455555555555555555667788877777651
Q ss_pred ----C---ChHHHHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH-h
Q 009679 253 ----N---DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-N 323 (529)
Q Consensus 253 ----~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~ 323 (529)
+ ...++.++..+|.||+.++..+...++. .|++..++..|.+..+++..-...+|.||.=..+.....++ +
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence 1 2458999999999999877665555554 49999999999998888888888999999877676666665 5
Q ss_pred cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcC----ChhHHHHHHHHHHHHhcC
Q 009679 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA----EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~----~~~v~~~a~~aL~nl~~~ 398 (529)
.|-+..|...--........+..+.+|.||++++.++...+.. .|.+..|+.+|... ...+.+.|-.+|.|+...
T Consensus 436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 6777777766544435567788899999999988888777774 68899999999865 446778888888887653
Q ss_pred C--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC
Q 009679 399 G--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476 (529)
Q Consensus 399 ~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~ 476 (529)
. ..++.+.|.+..++..|++.|++..--++.++|++|.||.-.+... .++|-+.|.+.-|.+|.++
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D------------Qq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED------------QQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH------------HHHHHhcccHHHHHHHHhh
Confidence 2 3467788889999999999999999999999999999998777654 5678889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 009679 477 DNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 477 ~~~~v~~~a~~il~~~~~~~ 496 (529)
.+..+..-+...|.++....
T Consensus 584 KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 584 KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhHHHHHHHHhcCC
Confidence 99999988888888877654
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.50 E-value=3.1e-10 Score=118.31 Aligned_cols=371 Identities=13% Similarity=0.125 Sum_probs=242.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.+++.+.++|..++......+...+... + -..+. .++.|.+-+.+++ |.+|..|++.|++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--p-elalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--P-EKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--h-HHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 6788999999999999999988888876432 2 11111 4678888888888 9999999999998876 44444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.+ ++.+.+.+.+.++-||..|+.++..+...+++ .+...+.++.+..+| .+.++.+..+|+.+|..++...
T Consensus 140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 33 47788889999999999999999999876553 445567788888888 7889999999999999998765
Q ss_pred CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
+. ........+..++..+..-++..+..++.+|.......+... ..++..+...|.+.++.|...|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 234456666777777777788888888888866443222211 256788888899999999999999999887
Q ss_pred cCC-hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------
Q 009679 312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII------------------------- 365 (529)
Q Consensus 312 ~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------------------------- 365 (529)
... +.....+.. .+-+.++.++ ++ +++++..++..|.-++...|.....-+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 642 222222211 1224444443 33 566776666666555543332211100
Q ss_pred H----cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 366 E----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 366 ~----~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
+ ..++..|.....+.+.+++..++.++++++..-. ... ..++..|+++++.... ++..++.++.+++..
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 0 0123344444445566777777777777765422 221 2356677777764333 334456666666654
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHH-H--hcCCCHHHHHHHHHHHHhhCCC
Q 009679 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN-L--QSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~-L--~~~~~~~v~~~a~~il~~~~~~ 495 (529)
.+. .. .+..|.. + ..-.+++.+....|||..|-+.
T Consensus 435 yP~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 435 YPE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred Ccc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 321 00 1222221 1 2335677777779999988553
No 38
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.7e-11 Score=121.50 Aligned_cols=360 Identities=15% Similarity=0.114 Sum_probs=238.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009679 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 154 (529)
.++..|.+..|...-.|..++..++..+ -| ... -.++++.|+.....+....++..++.+|+.++.+-....-.-.
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP-~n~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LP-QNQ--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhh-Cc-hhh--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3455677778888888889998888765 11 111 1234445555555555235899999999999985322211111
Q ss_pred hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 155 DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 155 ~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
.+.++..+++..+. ++..+|-.|+.+|.|-.......-..-.+.+.+...+--..++++.+++..++.||..+..-..
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 24567777887766 6789999999999886533221111122334443333333377899999999999998876542
Q ss_pred CCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH---------------HHHHH---hCcHHHHHHhcC
Q 009679 233 QPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI---------------QAVIE---AGVCPRLVELLR 293 (529)
Q Consensus 233 ~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~---------------~~~~~---~~~~~~L~~lL~ 293 (529)
.....+. ...++.-+..+.+++++|...++...+++|+...+.. ..+.. .+++|.|+++|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 2222233 3466666777789999999999999999886422210 11111 267888888885
Q ss_pred C-------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009679 294 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 294 ~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
. +++.....|--||.-++...... ++. .++|++-.-++++ +++-|..|+.+++.+..+.......-+-
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 4 24567777777777766533221 222 5677777777888 9999999999999999974444444444
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009679 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 367 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
.+.+|.++.++.++...++..+.|+++.++................+..++.-|. ..|.+..+++|++.++.+...+
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHH
Confidence 5699999999998888999999999999998653222222222334555555444 5788999999999999976544
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=9.7e-12 Score=129.25 Aligned_cols=329 Identities=18% Similarity=0.210 Sum_probs=246.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.+++.+.+++...+.-+-.++..+.... +..-.+ +++.+.+-|.+++ +.++..|+++|+++.. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 47889999999999999999888888877543 221111 5677888888888 9999999999999995 6655
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+ ++.+.+++.++++.||..|+.++..+....|+. +... .++.+..++ .+.++.+...|+.++..+ ..
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 588999999999999999999999998665542 2222 578888888 788899999999999998 22
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
.+..........++.|.+++...++.++..++..+..++......... ..+++.+..++.+.++.+...|+.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111445666777777778899999999999999998766544311 36788888888888899999999999988
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHHHHH
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA 389 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~ 389 (529)
..... .-..+++.+..++.++ ++.+|..++.+|..++...+.... .....+..+. +++..+|..++
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~------~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF------NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG------THHHHHHHHHCSSSHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh------hhhhhhheecCCCChhHHHHHH
Confidence 76433 2225788899999987 899999999999999987534332 2222333455 77899999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhcc-CCCCHHHHHHHHHHHHHHHHhhh
Q 009679 390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
..|.+++.. ..... +++.|...+ ...+++++..++..|..+.....
T Consensus 326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 999999853 44444 466777777 45688899999999998876654
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.47 E-value=1.3e-12 Score=106.69 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=110.2
Q ss_pred HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009679 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (529)
Q Consensus 109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (529)
.+++.|+++.|++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999999988 999999999999999988999999999999999999999999999999999999999988
Q ss_pred chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
+..+..+...|+++.++..+ .+.+..++..++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888999999999999 66688999999999999873
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=2.2e-12 Score=105.27 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=110.1
Q ss_pred HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 009679 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 358 (529)
+++.|+++.+++++.++++.++..++++|++++...+.....+++.++++.+..+|.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
.....+.+.|+++.++.++.+++.+++..++|+|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777888899999999999999999999999999999863
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.41 E-value=2.1e-09 Score=112.14 Aligned_cols=294 Identities=15% Similarity=0.102 Sum_probs=208.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
|.+..+.+.|++.+...+..+++.+......+ .+. ..+++.+++++.+++ ..++.-..-.+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 34567788888888888888888776665443 111 235677888998888 8999999989999988666643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
-. +++.|.+=+.++++.+|..|++++++|-.. ..-+. .+.++.+.+ .+.++-+++.|+.++..+...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 367888888899999999999999998532 22222 355667777 778999999999999999876
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
.|. .....+.++.|..+|.+.|+.|..+|+.+|..+....+.... ...+.+..++..+..-++..+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 542 223456788899999999999999999999999866544332 2335677788888776777777788887654
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 389 (529)
.-.++... ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.+.++.+ .+++++++-.++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence 32222211 24677788888888 899999999999988764 2343333322 133445555 345667777777
Q ss_pred HHHHHHhc
Q 009679 390 WAISNATS 397 (529)
Q Consensus 390 ~aL~nl~~ 397 (529)
..|.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655554
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.40 E-value=5.3e-10 Score=108.26 Aligned_cols=323 Identities=14% Similarity=0.174 Sum_probs=229.4
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----CChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 157 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 157 g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
..+..++.++.. ...++.+.++..+.-+..+.+.....+.+. ....+++.+| ...+.-+...++..++.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 345667777766 668888888988998888777655555553 4677888888 566888889999999988776
Q ss_pred CCCCch-hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHH
Q 009679 231 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 306 (529)
Q Consensus 231 ~~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~ 306 (529)
.+.... ......++.+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+.+|+.. +..+...++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 532211 12223445666666654 4667777888999988876544 5677888999999999763 34678889999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCCHHHHHHHHhcC
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~~l~~~ 380 (529)
++-++...+ ........++++.+..+++.....++-+-++.++.|+...+ ......+++.|+.+.+-.+...+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999987544 44555677999999999988767889999999999999842 22344566776666444444333
Q ss_pred --ChhHHHHHHHHHH-------HHhc------------------CC----CHHHHHHHHHcC--ChHHHHhccC-CCCHH
Q 009679 381 --EFEIKKEAAWAIS-------NATS------------------GG----SNEQIKFLVSQG--CIKPLCDLLN-CPDPR 426 (529)
Q Consensus 381 --~~~v~~~a~~aL~-------nl~~------------------~~----~~~~~~~l~~~~--~l~~L~~lL~-~~~~~ 426 (529)
|+++....-..-. .+++ +. -.++...|.+++ ++..|+.+|+ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 6665433222211 1110 00 124455555554 3788999995 56788
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
+...||.=|+.+++..+. ....+++.|+-+.+-.|+.|+|++|+..|...++++..
T Consensus 370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888889889988877643 26778899999999999999999999999999988753
No 44
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.38 E-value=1.3e-13 Score=105.18 Aligned_cols=88 Identities=45% Similarity=0.612 Sum_probs=60.3
Q ss_pred CCccHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCc----cchhhh-hhhhhccHHHHHHh
Q 009679 6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL----TNSAAL-DNKKLESLPAMVAG 79 (529)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~----~~~~~~-~~~~~~~l~~l~~~ 79 (529)
+...+.|++.||+ |+|++|+|+||++..|+|||+||++.|.|||+......... ...... .......+|.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 3467899999999 58999999999999999999999999999999865443311 001111 11223468899999
Q ss_pred hcCCCHHHHHHHHH
Q 009679 80 VWSDDRNIQLDATT 93 (529)
Q Consensus 80 L~s~~~~~~~~a~~ 93 (529)
+.|+|+..|+.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.34 E-value=1.5e-09 Score=105.22 Aligned_cols=321 Identities=12% Similarity=0.075 Sum_probs=222.5
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhh-----cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009679 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (529)
Q Consensus 72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~-----~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~ 145 (529)
....++..++ ....++....+..+..++... +.....+.+ ......++.+|..++ .-+...|+.+|+.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 3456666666 456777778888888888653 333444443 346677888998877 88999999999999875
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-hHHHHHHHHHH
Q 009679 146 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT 223 (529)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~ 223 (529)
.+.........-.++.|...+.+ .+...+..|+.++..+....+ +|..+.+.++++.|+.+|.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 44321111111133455556655 347788888999999987654 7999989999999999996544 77899999999
Q ss_pred HhhhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCc------hhHHHHHHhCcHHHHHHhcCC--
Q 009679 224 LSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH-- 294 (529)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~-- 294 (529)
++-|+...+........++++.++.+++.. .+.|..-++.++.|+..... .....+++.|+.+ ++..|..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 999988864333344478999999999854 68899999999999987431 2334566666655 4444433
Q ss_pred -CCcchHHHHHHHHHHh--------hcC--------------Ch---------hhHHHHH--hcCChHHHHHHhccCCch
Q 009679 295 -PSPSVLIPALRTVGNI--------VTG--------------DD---------MQTQCII--NHQALPCLLDLLTQNYKK 340 (529)
Q Consensus 295 -~~~~v~~~al~~L~~l--------~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~ 340 (529)
.++++.. .+..|... ++. ++ +....+- +..++..|..+|..+.++
T Consensus 290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 2333322 12222111 110 11 1111121 224577888898654478
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
.+..-||.=|+.+++..|..+..+-+.|+=..++.+|.++|++||.+|+.|+..+..
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888999999999999878877777788999999999999999999999999988764
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-09 Score=109.06 Aligned_cols=342 Identities=15% Similarity=0.168 Sum_probs=245.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.+|.|+..|+ ..+.+++..|++++..++..- +.....+++.+.||.|++-|..-...++.++++.+|-.|+.. .-
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence 4788888888 457999999999999998653 455677889999999998777655589999999999999983 44
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
..++++|++...+.+|.--+..++..|+.+..|+|..- ++--..+++ ++|.|..+| ...+.....+++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 57889999999999998888999999999999999422 111234444 788888888 77788888999999998887
Q ss_pred CC-CCCch---hhhhchHHHHHHhhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----
Q 009679 230 GK-PQPLF---EQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---- 297 (529)
Q Consensus 230 ~~-~~~~~---~~~~~~l~~L~~ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~---- 297 (529)
.. +.+.. ....+++.-..+++...+ ..+-...++.+..++.+.+.....+.+.++...|..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 75 22222 233677777777777543 3455667777888887766666667777777777777643110
Q ss_pred c----h-H------HHH---------------------------------------------------HHHHHHh-----
Q 009679 298 S----V-L------IPA---------------------------------------------------LRTVGNI----- 310 (529)
Q Consensus 298 ~----v-~------~~a---------------------------------------------------l~~L~~l----- 310 (529)
. + + ... .+++..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0 0 0 000 0111100
Q ss_pred --------hc---------CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHH
Q 009679 311 --------VT---------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGIIG 371 (529)
Q Consensus 311 --------~~---------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~l~ 371 (529)
.. ..++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+++.+..++. .++-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 00 01112222222 4688888988877689999999999999887 56888888875 44555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009679 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 372 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 421 (529)
.+-.+|.+.+..|..-|+...--++..-..-+...+.+.|++..+-+|..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 66667888888888777777777776655567788889999888887776
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-09 Score=107.87 Aligned_cols=361 Identities=14% Similarity=0.155 Sum_probs=240.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+|.+-+.++++|...+..|+.++..++.+. ++....-+-.+++|.++.++.++. --++..++|+|+.++...++.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence 3566666889999999999999999999764 344444455679999999999777 78899999999999997775543
Q ss_pred HH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-----HHHHhcCChHHHHHHhc------cchhHHHHHH
Q 009679 152 VV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFN------EHAKLSMLRN 219 (529)
Q Consensus 152 ~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~~~i~~l~~~l~------~~~~~~~~~~ 219 (529)
.. .-.+.++.++.-|.+ .+.+..+++|++.+++....+.. ..... ...+.++.-|. +..+..++..
T Consensus 443 n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 22 223555666666654 68899999999999983211100 00000 12333443332 2245678888
Q ss_pred HHHHHhhhhcCCCCCchhhhhchHHHHHH---------hhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009679 220 ATWTLSNFCRGKPQPLFEQTRPALPALER---------LIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (529)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~---------ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 286 (529)
+..+|..+....+........+..+.+.. .+...| .+++...|.+|..+.......+..+.+ .++.
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 99999999998766655555555554443 222222 456777777777776443333343444 5677
Q ss_pred HHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009679 287 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (529)
Q Consensus 287 ~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (529)
.++.++.+ .+..+...|+.+++.++..-......-+. .+.|.|..-|+...+..|...|+..++.+++.-.+.+..+.
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~ 678 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC 678 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 78888877 45567888888888887754433332222 57788888886554788889999999999985344343333
Q ss_pred HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc--CC-C-C-------HHHHHHHH
Q 009679 366 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NC-P-D-------PRIVTVCL 432 (529)
Q Consensus 366 ~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL--~~-~-~-------~~v~~~~l 432 (529)
+ +++..|+..|+++ +.++|-..+.+.+.++.....++.+|+-. +++.|.+.- +. + | .++++.++
T Consensus 679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l 755 (859)
T KOG1241|consen 679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL 755 (859)
T ss_pred H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence 3 4888999999987 67899999999999987666677777532 344444332 11 1 1 24677777
Q ss_pred HHHHHHHHh
Q 009679 433 EGLENILKA 441 (529)
Q Consensus 433 ~aL~~l~~~ 441 (529)
++..-++..
T Consensus 756 eay~gi~qg 764 (859)
T KOG1241|consen 756 EAYTGIIQG 764 (859)
T ss_pred HHHHHHHHH
Confidence 777766543
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.22 E-value=3.1e-10 Score=112.04 Aligned_cols=344 Identities=13% Similarity=0.117 Sum_probs=225.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.+.+++..++++.+..+...+..+.++.+.-....+.+-.+.-.+..++..++..++ ..+.......+.+-..+ +
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----r 792 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----R 792 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----c
Confidence 366778888888888888888888888765433334443444455666666665442 22333333333332221 0
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
-.-.-.-++..++..|+++++.+|.+|+..++.++.--..|. +.+...|. .|...| ....+++.-..+.++..++
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence 000111245666778899999999999999999974222221 22333332 255556 6668888888888877766
Q ss_pred cCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009679 229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 229 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
... -.....-..+++|.|..+|++....|+.+++..++.+++..++.+..---..+.--|+++|...+..++..|..++
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 543 1222334578999999999999999999999999999988776544322234555677888888889999999999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009679 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (529)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 387 (529)
|.|+..- --..++..|+.-|+.. +...|....-+++-++..+... .++|.|++-...++..|+.-
T Consensus 950 G~IakaI-------GPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 950 GYIAKAI-------GPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred hHHHHhc-------CHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHh
Confidence 9998632 1224455566666555 4444444444444443321111 26888888888888899999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 388 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
.+.+++.+..........|+.. +.+.|.+.|-+.|..-+..+..++..+.
T Consensus 1015 VLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 9999999987655444555443 6788888888888888888888777775
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1e-07 Score=95.51 Aligned_cols=325 Identities=15% Similarity=0.186 Sum_probs=236.9
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--- 189 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~--- 189 (529)
.|+.|++-+.+..-.+=|..|++.|-.++. ..|..+...| +++|++.|.. .++++...++.++.++..+.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 577888877766546779999999999987 5666666555 7889999976 679999999999999985442
Q ss_pred ---h----------hHHH-HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchh---hhhchHHHHHHhhcc
Q 009679 190 ---K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS 252 (529)
Q Consensus 190 ---~----------~~~~-~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~ll~~ 252 (529)
. +.+. +...+.|..++..+ ...|-.++.++...++.+....|..... ....++..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1122 33456777888888 7778999999999999999887544332 236788899999999
Q ss_pred CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC----CcchHHHHHHHHHHhhcCChhhHHHHHhcCChH
Q 009679 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (529)
Q Consensus 253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 328 (529)
..+.+|-.++..|+.++.........+.=.+++..|+.++..+ ..-|...|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988765544444458999999999653 236788899999999999888888888999999
Q ss_pred HHHHHhccCC--c-----hhH-----HHHHHHHHHHHhc-CC----HHHH-HHHHHcCCHHHHHHHHhcC--ChhHHHHH
Q 009679 329 CLLDLLTQNY--K-----KSI-----KKEACWTISNITA-GN----VNQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA 388 (529)
Q Consensus 329 ~L~~lL~~~~--~-----~~v-----~~~a~~~L~nl~~-~~----~~~~-~~l~~~~~l~~L~~~l~~~--~~~v~~~a 388 (529)
.|.++|.... + +.- ...+..++..+.. ++ .++. ..+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998884321 1 111 1345555666555 22 2233 3455788999999998876 56899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcC----------ChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 009679 389 AWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE 445 (529)
Q Consensus 389 ~~aL~nl~~~~~~~~~~~l~~~~----------~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~ 445 (529)
..+++++.++.. .....+.+-. ++-.++.+... .....+.+++.++..++-.+...
T Consensus 338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 999999998753 3334444321 12233344443 34577888888888887665543
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.9e-08 Score=95.33 Aligned_cols=218 Identities=16% Similarity=0.183 Sum_probs=162.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
-+.++..|++.-+-++..|+..+.++.-.. ++..+ ..+|.|++-|.+++ |.++.+|+.+++.++..+|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence 467788888888999999998888876443 11121 36899999999999 999999999999999988776433
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh--hhhc
Q 009679 153 VIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS--NFCR 229 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~--~l~~ 229 (529)
.-|.+.++|.. .+.-+....+..+++|+--.|..... .++++..++......++...+..++. +++.
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 34888888865 45556667788889998776665444 67899999955555666666665554 2333
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009679 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
+. ........-++..|-.++.+.|+.++.-++-+++.+....+..++ .--+.++.+|.+.++.++..|+..+.-
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 32 133344566778888888899999999999999999977665444 234678899999999999999999988
Q ss_pred hhcC
Q 009679 310 IVTG 313 (529)
Q Consensus 310 l~~~ 313 (529)
++..
T Consensus 363 mVsk 366 (877)
T KOG1059|consen 363 MVSK 366 (877)
T ss_pred Hhhh
Confidence 8763
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.15 E-value=5e-09 Score=97.85 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=203.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
.+.+++.|..+|.-+...+.+.+.++++.... ........=....|...+++..+++-..-|++||..+.. .++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 46778888888998888899999998876522 111100001223445556664447788889999999998 7889999
Q ss_pred HHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 153 VIDHGAVPIFVRLLS-S-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
++...++..++..+. + .+..++-+.+.+++-+...+.. .+.+...+.++.|..++..+....+.+.++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998888999999883 3 6788999999999999866654 466678889999999998888999999999999999987
Q ss_pred CCCCc------hhhhhchHHHHHHhhcc---CChHHHHHHHHHHHHh-------ccC---------------Cc------
Q 009679 231 KPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALSYL-------SDG---------------TN------ 273 (529)
Q Consensus 231 ~~~~~------~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~L~~l-------~~~---------------~~------ 273 (529)
.+... ...+..-++..++.|.. .|+++..+.-..-..| +.. +.
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 64221 12223334444555542 3666654433332222 111 00
Q ss_pred --hhHHHHHH--hCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHH
Q 009679 274 --DKIQAVIE--AGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 348 (529)
Q Consensus 274 --~~~~~~~~--~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 348 (529)
++...+.+ ..++..|+.+|... +|.+..-|+.=+|..+...++....+.+.|+=+.++.+|.++ +++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 11111222 25788999999775 488888999999999999999999899999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 009679 349 TISNITAG 356 (529)
Q Consensus 349 ~L~nl~~~ 356 (529)
++..+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98776543
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.3e-08 Score=91.33 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=157.8
Q ss_pred CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 009679 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (529)
Q Consensus 253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 332 (529)
.+.+-+..++.-|..++..-+ ....++..|++..++.++.+.+..+|..|+++||.++..++.....+++.++++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 466778888888888887654 4466888899999999999999999999999999999999999999999999999999
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009679 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410 (529)
Q Consensus 333 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (529)
.+.+..+..+|..|..+++.+.+..+.....+...++...|...|.+ .+..++..|+..+..++... ......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence 99887677889999999999999988888889988889999999999 47788899999999998753 2333455555
Q ss_pred CChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
+....+..+....+.++...++.++..++..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 6777777777788888888888777766644
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6e-07 Score=90.17 Aligned_cols=324 Identities=18% Similarity=0.203 Sum_probs=240.0
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCh-
Q 009679 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS- 147 (529)
Q Consensus 71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~- 147 (529)
+.++.|+..+.+ .-.+-|..|++.|..+... ....+.. .+++.|++.|+.+. ++++...++..+.++...+.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 478899988874 4578899999999987643 2444444 46778888887543 48899999999999887442
Q ss_pred -----h----------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhc-CChHHHHHHhc
Q 009679 148 -----E----------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSN-GALMPLLAQFN 209 (529)
Q Consensus 148 -----~----------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-~~i~~l~~~l~ 209 (529)
+ ..+.++ ..+.|..|+.++...+-.||..++..|.++.. .+.+.++.++.. .+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 1 122333 45789999999999999999999999999874 445677776654 3789999999
Q ss_pred cchhHHHHHHHHHHHhhhhcCCCCCch-hhhhchHHHHHHhhccC---C-hHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009679 210 EHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (529)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 284 (529)
.+....++..+...|..+.++.+.... .....++..|..++... | .-|..+|+..+.||..+...+...+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777788899999999999998855544 34588999999999854 3 358899999999999888778788888999
Q ss_pred HHHHHHhcCC---CC-----cch-----HHHHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHHhccC-CchhHHH
Q 009679 285 CPRLVELLRH---PS-----PSV-----LIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQN-YKKSIKK 344 (529)
Q Consensus 285 ~~~L~~lL~~---~~-----~~v-----~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~ 344 (529)
+++|.++|.. .+ |.- ...++.++..++.-.. .....+...+++..|..++-++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988854 22 111 2346677776665321 2223456788999999988776 3678999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCC
Q 009679 345 EACWTISNITAGNVNQIQAIIEAG----------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 345 ~a~~~L~nl~~~~~~~~~~l~~~~----------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~ 400 (529)
++..+++++.+++......+.+.. ++-.++.+..+. .+..|..+.+++..+.....
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 999999999999887777766521 122233333333 67899999999998887643
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=6.8e-08 Score=97.16 Aligned_cols=341 Identities=16% Similarity=0.200 Sum_probs=233.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
..++.++++....|.+.....-..+.+.+... |.. ..++++.+++=..+++ |.+|.-|++.++.+-. +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~~---a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PDL---AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC---chH---HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 46899999999999888877777777776543 222 2356788888888888 9999999888777665 2222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.. +...+..++++.++.+|..+..+..++-..++ +.+...|.++.|-.++ .+.++.+..+|+.+|..+...
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 22 35788999999999999999999999876554 5677889999999999 688999999999999999887
Q ss_pred CCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009679 231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (529)
Q Consensus 231 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~ 309 (529)
.+. .........+..++..+..-++.-+...+.++.+-...++...+ .++.++...|.+.+..+...+...+-+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 33444456666666666666666677777777665544432222 456778888888888888888888877
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009679 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-------------------------AI 364 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l 364 (529)
+..........+. ..+-+.++.++.+. . +++..|..-+.-+....|+... .+
T Consensus 266 ~~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 7765444222222 24556666666555 3 4444444333333222222110 01
Q ss_pred HH-cC---CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009679 365 IE-AG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 365 ~~-~~---~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
.. .+ ++..+...-..-|.+..+++++|+++++...... ++++..|+++++..-..++..+...+..++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 11 11 3344444444558888999999999998854321 5789999999997776677777778888887
Q ss_pred hhhh
Q 009679 441 AGEA 444 (529)
Q Consensus 441 ~~~~ 444 (529)
+.+.
T Consensus 416 kyP~ 419 (734)
T KOG1061|consen 416 KYPN 419 (734)
T ss_pred cCCC
Confidence 7654
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-08 Score=92.70 Aligned_cols=187 Identities=23% Similarity=0.238 Sum_probs=154.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009679 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (529)
Q Consensus 81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (529)
.+.+.+.+..|+..|..++. +-++...++..|++..++.++++.+ +.+|..|+|+|+.++..+|.....+++.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 46678889999999999884 3567888899999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009679 161 IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
.|+..+.+ .+..++..|+.+++++....+.....+...++...|...+... .+..+++.++..+..+...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999987 5677889999999999999888888899999999999999543 688899999999999988763332232
Q ss_pred -hhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009679 239 -TRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 239 -~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
..+....+..+....+.++...++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 23333445555666677787777777766553
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.02 E-value=4.2e-07 Score=85.29 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=213.0
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH------HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 159 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
+..++.+++. ..++....++..+.-+...+...... ......-...+.++ ...+.-+.....|.++.++...
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence 4455556655 33455555555555554433321111 11223356778888 5666677777889998887765
Q ss_pred CCCchh-hhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHH
Q 009679 232 PQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV 307 (529)
Q Consensus 232 ~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L 307 (529)
+..... ...-....|-..+++ .+++-+.-+.+||..+...++.+ ..++...++..++..+.+ .+-.++...+.|+
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 322221 222233344455554 56777888888999888877655 445556777788877733 3556788899999
Q ss_pred HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHHHhcC-
Q 009679 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA- 380 (529)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~~l~~~- 380 (529)
+-++. ++...+.+-..+.++.|..++++....+|-+-++.++.|++...+ +....++..++.+.+-.+-..+
T Consensus 225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 98876 455556667789999999999887678899999999999998653 4445566776666655554443
Q ss_pred -ChhHHHHHHHHHHH-------HhcCC----------------------CHHHHHHHHHc--CChHHHHhccCCC-CHHH
Q 009679 381 -EFEIKKEAAWAISN-------ATSGG----------------------SNEQIKFLVSQ--GCIKPLCDLLNCP-DPRI 427 (529)
Q Consensus 381 -~~~v~~~a~~aL~n-------l~~~~----------------------~~~~~~~l~~~--~~l~~L~~lL~~~-~~~v 427 (529)
|+++....-..-.. +++.. -.+++..|.++ .++..|+.+|+.. ||.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 55554332222221 21110 12445555554 3488899999864 5888
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 428 ~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
...|+.=|+.++...+. ....++..||-+.+-+|.+|+|++|+-.|...++++..
T Consensus 384 L~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 88888888888887654 37788999999999999999999999999888877654
No 57
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.00 E-value=2e-07 Score=90.20 Aligned_cols=355 Identities=13% Similarity=0.131 Sum_probs=223.9
Q ss_pred ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009679 71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (529)
Q Consensus 71 ~~l~~l~~~L~s~-------~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~ 143 (529)
+.+|.+++.|..+ +...-..|..+|.-.+..-. +.+.+ .++..+=+-+.+++ ..-+..|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g----d~i~~-pVl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG----DKIMR-PVLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh----hHhHH-HHHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 3688999888642 34455555555554432211 11122 13333344566666 788999999999999
Q ss_pred cCChh-hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--chhHHHHHHH
Q 009679 144 SGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNA 220 (529)
Q Consensus 144 ~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a 220 (529)
.+..+ ++..++ ..++|.+...+.++.--+++.++|+++.|+.+ ....+-..+.++..+..... ...+.+..++
T Consensus 395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 86543 344444 46788888888888888999999999999865 33455556666665554322 2356778889
Q ss_pred HHHHhhhhcCCCCCc---hhhh----hchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH-
Q 009679 221 TWTLSNFCRGKPQPL---FEQT----RPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE- 290 (529)
Q Consensus 221 ~~~L~~l~~~~~~~~---~~~~----~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~- 290 (529)
+|..-||..+-+... ...+ ..++..|++... .++...+..+..+|+.+....++....+.- |+......
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~k 549 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKK 549 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHH
Confidence 999999988753222 1122 233333333322 345678888888888887655544332221 22222222
Q ss_pred ----------hcCCCC----cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 291 ----------LLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 291 ----------lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
.+..++ .+++..-+..|..+........+.+ +..++..++.+|.+.....+-.....++++++..
T Consensus 550 l~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 550 LDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence 222221 3455666667766665444333222 2246778888888773444556778889999875
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHH
Q 009679 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEG 434 (529)
Q Consensus 357 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~a 434 (529)
-.+...... ..++|.|...|...+..+...|...++.++..-+.+...| ....+..|++.|.++. .+++-.++.+
T Consensus 629 l~e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSv 705 (858)
T COG5215 629 LEERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHH
Confidence 344444333 3499999999988899999999999999987655454443 2346788999988654 4677777877
Q ss_pred HHHHHH
Q 009679 435 LENILK 440 (529)
Q Consensus 435 L~~l~~ 440 (529)
++-|..
T Consensus 706 FgDIAl 711 (858)
T COG5215 706 FGDIAL 711 (858)
T ss_pred HHHHHH
Confidence 777743
No 58
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.00 E-value=6.2e-07 Score=86.88 Aligned_cols=347 Identities=14% Similarity=0.065 Sum_probs=216.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHH----hhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE----FLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~----lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..|.+..|..-..|+..+..++..+ +..|.+|-|.+ ....+.....+.+++.++++++..... +
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E--------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e 168 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME--------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--E 168 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh--------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--H
Confidence 345677888888888888888877654 23345555544 444444357899999999999983322 2
Q ss_pred HHH-hC-CChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHH---HhccchhHHHHHHHHHHH
Q 009679 152 VVI-DH-GAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA---QFNEHAKLSMLRNATWTL 224 (529)
Q Consensus 152 ~~~-~~-g~i~~L~~-lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~---~l~~~~~~~~~~~a~~~L 224 (529)
.++ .. .++-.++. .++. ++..+|-.++.+|.+-+.. .+..+...+-...+++ -..+..+.+++..+..||
T Consensus 169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 222 22 23333444 3333 6788898898888873321 2222222222222222 223677899999999999
Q ss_pred hhhhcCCCCCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-------------HH---HhCcHHH
Q 009679 225 SNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------VI---EAGVCPR 287 (529)
Q Consensus 225 ~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~-------------~~---~~~~~~~ 287 (529)
..+..-.......+. ..+.......+.+++++|...+....+.+|....+..-. +. -.+++|.
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~ 325 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE 325 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence 887654311111222 333345567788999999999999888887532211000 11 1257899
Q ss_pred HHHhcCC-------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 009679 288 LVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (529)
Q Consensus 288 L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 360 (529)
|+.+|.. +++.+...|..||.-.+.... ..++. .++..+-+-++++ ++.-|..|+.+++.+..+..+.
T Consensus 326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHH
Confidence 9999854 345677777777766654222 12222 3666677777888 8999999999999999975554
Q ss_pred HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc-cC--CCCHHHHHHHHHHHHH
Q 009679 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL-LN--CPDPRIVTVCLEGLEN 437 (529)
Q Consensus 361 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-L~--~~~~~v~~~~l~aL~~ 437 (529)
+..-+-...+|.+...+.++...++..++|+++.++.+- ...+-..|-+...++. +. ...|.+...+.|...+
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~n 476 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKEN 476 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHh
Confidence 444444458999999999888889999999999998632 2222222333222221 11 3467788889999999
Q ss_pred HHHhhhh
Q 009679 438 ILKAGEA 444 (529)
Q Consensus 438 l~~~~~~ 444 (529)
+...-.+
T Consensus 477 lv~h~a~ 483 (858)
T COG5215 477 LVDHIAK 483 (858)
T ss_pred HHHhhhh
Confidence 9765443
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=1.9e-08 Score=96.30 Aligned_cols=230 Identities=17% Similarity=0.224 Sum_probs=166.5
Q ss_pred HHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHHHHHh------CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009679 245 ALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 245 ~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
.++.+|. +.+++++.+++..+..+....+...+.+... ..+..++.++.+++..+...|+.+++.+....+.
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 3334443 4689999999999999998777776666552 3678888999999999999999999999987665
Q ss_pred hHHHHHhcCChHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH------hc-CChhHH
Q 009679 317 QTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL------LN-AEFEIK 385 (529)
Q Consensus 317 ~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l------~~-~~~~v~ 385 (529)
...... .+.++.++.++.+ + +..++..|+.+++++... ++.+..+.+.++++.+.+++ .. ....++
T Consensus 139 ~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 139 RSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp --HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred cccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 444322 3455666666654 4 567789999999999976 88888888999999999999 22 266788
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh
Q 009679 386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 464 (529)
-+++.++.-++. +++.+..+...++++.|.++++. ...+|.+.++.+|.|++..+.+. +...+-..
T Consensus 216 Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-----------~~~~mv~~ 282 (312)
T PF03224_consen 216 YQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-----------NIELMVLC 282 (312)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-----------HHHHHHHH
T ss_pred HHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-----------HHHHHHHc
Confidence 899999999988 66888999999999999999984 55789999999999999776532 35566679
Q ss_pred chHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009679 465 EGLEKIENLQS--HDNTEIYEKAVKILE 490 (529)
Q Consensus 465 g~~~~l~~L~~--~~~~~v~~~a~~il~ 490 (529)
|++..++.|+. -+++|+++--..+-+
T Consensus 283 ~~l~~l~~L~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 283 GLLKTLQNLSERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp -HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999964 477888776555443
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.99 E-value=7.7e-09 Score=100.46 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=179.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-CC
Q 009679 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QP 234 (529)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~ 234 (529)
++..++.+|+++.+.+|.+|+...+.++.--..| ...+...|. .|..-| ....+++.-..+.+++.+..... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677888999999999999999999887321111 123333332 244445 55678888877777776654331 11
Q ss_pred chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009679 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 314 (529)
...-..+++|.|..+|++....|..+.+..++.++...++.+..---..+.--|+..|.+-+.+++..|..++|.++..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 22235789999999999999999999999999999887765443222345556777888888999999999999987632
Q ss_pred hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 009679 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (529)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n 394 (529)
. -..++..|+.-|+.. +...|....-+++-++..+-. -.++|.|+.-...++..|+.-.+.+++.
T Consensus 762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 2 224556666666665 554554444455444432111 1268888888888888999999999999
Q ss_pred HhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 395 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 395 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
+..........|+.. +.+.|.+.|.+.|+.-+..+...|..|.
T Consensus 827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 987655555555443 5777888888888877777776666664
No 61
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=3.8e-08 Score=94.21 Aligned_cols=227 Identities=14% Similarity=0.189 Sum_probs=163.2
Q ss_pred hHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhh-------chHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009679 201 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTR-------PALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 201 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
...++.+|... .+.++.++++-.+..++...+........ .....+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55566777555 78899999999999999987644433321 24566777888999999999999999998776
Q ss_pred chhHHHHHHhCcHHHHHHhcCC----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh------ccCCchhH
Q 009679 273 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI 342 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v 342 (529)
+....... .+.++.++.++.+ ++..++..|+.+++++.. .+..+..+.+.++++.+..++ .+....++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54434322 3566777777654 445677889999999986 677888888999999999999 44446788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009679 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 421 (529)
+.+++.++.-++-. ++.+..+.+.++++.|++++... ..+|.+-++.++.|++..........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 89999999988876 78888888888999999999875 67899999999999999876558888888888888777765
Q ss_pred --CCCHHHHHH
Q 009679 422 --CPDPRIVTV 430 (529)
Q Consensus 422 --~~~~~v~~~ 430 (529)
..|+++..-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 467777654
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.2e-06 Score=88.34 Aligned_cols=290 Identities=14% Similarity=0.143 Sum_probs=147.3
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009679 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (529)
Q Consensus 77 ~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (529)
.+-|++.+.-++-.|+.++.++.+.+ ++ ..+.|.+-++|++.+ +-++..|+-|...+....|+....+
T Consensus 113 knDL~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 33444555555555555555554322 11 124455556666655 6666666666666665555544433
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------chhHHHHHHHHH
Q 009679 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNATW 222 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a~~ 222 (529)
++...++|.+.+.-|...++..+..+|..+++.-..+.+ .++.++..|.+ -.+|=++..++.
T Consensus 181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred --hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 244455555555555555555555555444332222211 33334333320 013334444444
Q ss_pred HHhhhhcCCCCCchhhhhchHHHHHHhhccC---ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch
Q 009679 223 TLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (529)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v 299 (529)
.|.-|-.+++.. ...+..++..+..-..+. ...+...+..++..|-....-+ + -++..|-++|.+.+..+
T Consensus 257 lLriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr---v---lainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 257 LLRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR---V---LAINILGKFLLNRDNNI 329 (866)
T ss_pred HHHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH---H---HHHHHHHHHhcCCccce
Confidence 444443332111 111111111111111100 1233444444444333222111 0 12344555555555556
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009679 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
+.-|+..|...+..++...+. -=..++.+|+++ |..+|+.|...+-.+.-. .++.. ++..|+..|..
T Consensus 330 rYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~ 396 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLES 396 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHh
Confidence 666666666665544433321 224688899999 999999999888877754 23332 45678889988
Q ss_pred CChhHHHHHHHHHHHHhcCCCHH
Q 009679 380 AEFEIKKEAAWAISNATSGGSNE 402 (529)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~~~~~ 402 (529)
.+.+.+...+.-++.++..-.|+
T Consensus 397 ~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 397 SDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCc
Confidence 89999999999999888754443
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.9e-07 Score=89.29 Aligned_cols=293 Identities=14% Similarity=0.171 Sum_probs=199.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
..|.+-+.|+..++-++..|+.+..++.... |..- ..+++...++|.+.+ ..+...++..+..++..+++...
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLV----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHH----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence 3577788889999999999999999988653 2222 236778888998888 88999999999999998887777
Q ss_pred HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--cchhH
Q 009679 152 VVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKL 214 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~ 214 (529)
.+.+ .++.|+..|+. +++-++...++.|.-+-.+++...+.+.+ ++..+..--. ++...
T Consensus 216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchh
Confidence 6665 56666665531 56889999999999888776655444322 2222211111 11123
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009679 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 294 (529)
.+...++.++..+-.+. ....-++..|-++|.+.|..++.-++..|..+...++...+ . -=..++++|++
T Consensus 292 AILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq---r--Hr~tIleCL~D 361 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ---R--HRSTILECLKD 361 (866)
T ss_pred HHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH---H--HHHHHHHHhcC
Confidence 45566666665543332 22234677888999999999999999999999987765433 1 12568999999
Q ss_pred CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHH
Q 009679 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPL 373 (529)
Q Consensus 295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L 373 (529)
++..++..|+..+-.++..+. ... .+..++.+|... +++.+...+.-+..++.. .|+... .+..+
T Consensus 362 pD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~idtm 427 (866)
T KOG1062|consen 362 PDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HIDTM 427 (866)
T ss_pred CcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHHHH
Confidence 999999999999999887443 332 345688888887 889999888888888762 344333 23344
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 374 VNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 374 ~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
...+.....-|+..+...+..++..+
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcC
Confidence 45555443344444444444444433
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4e-06 Score=82.85 Aligned_cols=343 Identities=15% Similarity=0.130 Sum_probs=230.7
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
++..|+.-+..+. +.+|.....||..+......... .-+.+.+.+++......-+..+.+.++.+..... -..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 5677888888888 99999999999887762211111 1245778888888888888999999999987654 355
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
+.+.+++..+...+....+..-++.+..+.-..+..-......++...+|.++..+.+..+.|+..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 66777888888888433333333333333333333322334445567788888888888889988888877766544221
Q ss_pred -hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009679 275 -KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 275 -~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
... -+++.++.-+....+.....++..+|.++...+.+....+. .++|.+...|.+. .+++|+.+..++..+
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp-~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP-DLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh-HhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 112 23444444444457888999999999999888877765554 7999999999998 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHH
Q 009679 354 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429 (529)
Q Consensus 354 ~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 429 (529)
+. .+++ + . .++|.|++.+.++.-.+ .++...|+.-.... ++..+.. +++.|.+-+...+..+.+
T Consensus 323 ~svidN~d-I----~-~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 323 GSVIDNPD-I----Q-KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHhhccHH-H----H-HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 87 3444 2 1 27889999998765333 23444444333221 1111111 356666667777888889
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 430 ~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
.+..++.|++..-+..+. ....+.+. ++.|+.......|+++.-+.+.|.....
T Consensus 391 ~t~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hHHHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 999999999887644332 23334333 6667777777799999888877744433
No 65
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.8e-07 Score=90.37 Aligned_cols=320 Identities=17% Similarity=0.111 Sum_probs=200.7
Q ss_pred hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009679 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (529)
Q Consensus 111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (529)
.-.++++..+..+.+.+ ..+++.|+..+.|++.... ......-..+...+.++....+..++.. ...+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcc
Confidence 44578999999999998 8999999999999997221 1111122344566666666666555543 3333333221111
Q ss_pred hHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHH
Q 009679 191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 267 (529)
Q Consensus 191 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~ 267 (529)
-++. .--++.++.+|. ...++..+.....-+..|-...+.....+...+++.|..+|.++.++|+..+=.+++.
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0110 112445555553 3446777777666666555443333344567889999999999999999777766665
Q ss_pred hcc---CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHH
Q 009679 268 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (529)
Q Consensus 268 l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 344 (529)
+.. .++.. +--...++.++..+.++++.++..|+.-+..++.-..... ...-.|++..++.++.+.....++.
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence 542 12211 1112577888889999999999999887777776443322 1234577888888887762223554
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 345 EACWTI---SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 345 ~a~~~L---~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
.+..+- ..++.. +..... ++ ..++..+...+.++..+.|.+++.-+..+-.....+... ....+...|+.-|
T Consensus 311 ~a~~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL 386 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence 444332 222221 111111 22 236788888898888899998888888776654322222 2345778888889
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhh
Q 009679 421 NCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 421 ~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
.+.+.+|+..++..+..++.....
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999876543
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.3e-07 Score=95.28 Aligned_cols=372 Identities=15% Similarity=0.171 Sum_probs=209.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
...+.++++++++.+|..++....++-. ...+.+.+.|+++.|..++.+++ |.+...|+.+|..|...+++....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~----~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD----IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc----CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 4567778888999999999999888753 33566778999999999999877 999999999999999866542222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
.+....+..++..+...++--+...+.++.+....++ ++.. .++..+...| ++.+..+.-.+...+.++...-+
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence 2222233444444443333333333344443332222 1110 0122222223 22222332233333332222211
Q ss_pred CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH----------------------HH---HH-Hh---C
Q 009679 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI----------------------QA---VI-EA---G 283 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~----------------------~~---~~-~~---~ 283 (529)
.........+.+.++.++.+.. +++.-++.-+.-+....+... +. +. +. .
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 1111112222233333333222 333333333322221111100 00 00 00 1
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009679 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (529)
++.-+...-..-+......+++++|+++..-+.. .++++.|+.++... -..+..+++..+..+.+..|.....
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~~ 423 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYES 423 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchhh
Confidence 3333444444557788899999999998754433 57899999999877 6678888999999998865553322
Q ss_pred HHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 364 IIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 364 l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+++.+...+.+ ++++.|....|.++..+...+ ...+ ++..+++-..++...|+...+.+...++-..
T Consensus 424 -----vv~~l~~~~~sl~epeak~amiWilg~y~~~i~--~a~e-----lL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 424 -----VVAILCENLDSLQEPEAKAALIWILGEYAERIE--NALE-----LLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred -----hhhhhcccccccCChHHHHHHHHHHhhhhhccC--cHHH-----HHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 34445544544 488999999999999887542 2222 3445666666777888888887777776554
Q ss_pred hhhhhcCCCCccchHHHHHHhhchHHHHHH--HhcCCCHHHHHHHHHHHHhh
Q 009679 443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIEN--LQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~--L~~~~~~~v~~~a~~il~~~ 492 (529)
.... .+++ ..+-. .++.++++++.++...-.-+
T Consensus 492 p~~t-----------q~~l------~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 492 PTET-----------QELL------QGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred CccH-----------HHHH------HHHHhhhhccccChhhhhhHHHHHHHh
Confidence 3221 1222 22222 26778899999987765533
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.87 E-value=8.6e-07 Score=90.72 Aligned_cols=352 Identities=14% Similarity=0.136 Sum_probs=217.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009679 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 154 (529)
.+++.+.+.|.+.|+.|+.-|..-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence 6788899999999999999888766543 111222223457888999999998 9999999999999997554443221
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh----cc-chhHHHHHHHHHHHhhhhc
Q 009679 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~ 229 (529)
.+..|+.-+-++....|..+.-.|......-+......+...+.+.++..+ .. .....++..++..+..+..
T Consensus 86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 245555554444444444444333322211111122223333444444444 22 2233356666666554443
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHH
Q 009679 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVG 308 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~ 308 (529)
............++..++.-+.++-..|+..++.+|+.++...+.. .. .+++..|+.-|..+ +......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3211111244566777777788888999999999999998654321 11 15566666666553 4445555677788
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------
Q 009679 309 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------ 379 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------ 379 (529)
.++.........-. ..++|.+.+.. ... +.++|+.+..++..+....|..+-..+.. ++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence 87764433222212 25677777777 555 78999999999998887666655333321 34444443321
Q ss_pred -------------------------C---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009679 380 -------------------------A---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431 (529)
Q Consensus 380 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~ 431 (529)
+ ++.||++|+.++..+... ..+....+.+. +-+.++.-++..+..|+.-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence 0 256999999999999875 44665555443 55677777887777888777
Q ss_pred HHHHHHHHHh
Q 009679 432 LEGLENILKA 441 (529)
Q Consensus 432 l~aL~~l~~~ 441 (529)
..++..++..
T Consensus 394 f~~yi~ll~q 403 (1233)
T KOG1824|consen 394 FHAYIALLKQ 403 (1233)
T ss_pred HHHHHHHHHc
Confidence 7777777653
No 68
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.7e-07 Score=95.16 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=208.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009679 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (529)
Q Consensus 84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (529)
--..|+.|.......-+..+.||.+ +|..++.|-+ .--|..|+..|+.+..-.+-....-+.-|++|..+
T Consensus 449 FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL 518 (1387)
T KOG1517|consen 449 FFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL 518 (1387)
T ss_pred hHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence 3456777777777776666666654 3555555543 34488899999999887788888888889999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHHHHHHHHhhhhcCCCCCchhh-hh
Q 009679 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TR 240 (529)
Q Consensus 164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~ 240 (529)
++|+++-.+++-..+.+...|..-++.|+..+++.++-..+++.|..+. +++-+..++..|+.++.+.+..+... ..
T Consensus 519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~ 598 (1387)
T KOG1517|consen 519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG 598 (1387)
T ss_pred HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence 9999999999999999999988777889888888888888888885422 45778888999999999875544443 46
Q ss_pred chHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC----Ch
Q 009679 241 PALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD 315 (529)
Q Consensus 241 ~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~ 315 (529)
+++...+..|.++ .+-++..+|-+|+.|=.+.+...-.-.+.+..+.|..+|.++-++||..|+.+||.+..+ .+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 7788888888875 678899999999998766544333345568899999999999999999999999999885 33
Q ss_pred hhHHHH------------HhcCCh---HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009679 316 MQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371 (529)
Q Consensus 316 ~~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 371 (529)
++...+ ++..+. -.++.+++.. ++-+|.+.+-+|+.+..+...+...+.-....+
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 333322 222222 2566677788 899999999999999987666555444433333
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.4e-05 Score=81.15 Aligned_cols=328 Identities=15% Similarity=0.178 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHhcCCCCChhhH-----HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009679 87 IQLDATTQFRKLLSIERSPPINE-----VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (529)
Q Consensus 87 ~~~~a~~~l~~lls~~~~~~~~~-----~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (529)
-...++.+|+++++.. +.... ..--|.++.++.++.....+.++.-|+.++..+.. +.++...++..|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 4456889999998764 22211 12236778888888766558899999999988877 7889999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC---CCCchhh
Q 009679 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ 238 (529)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~ 238 (529)
|+.+|.+ -+..|+.++.+|..++.... ......+.|++..+..++-.+.++..+..++..+..+...+ |......
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999987 46789999999999987654 55667788999999998877788899999999999998876 3333323
Q ss_pred hhchHHHH-----------HHhhcc--CChHH------HHHHHHHHHHhcc--------CCc------hh----------
Q 009679 239 TRPALPAL-----------ERLIHS--NDDEV------LTDACWALSYLSD--------GTN------DK---------- 275 (529)
Q Consensus 239 ~~~~l~~L-----------~~ll~~--~d~~v------~~~a~~~L~~l~~--------~~~------~~---------- 275 (529)
+..+-..+ +.++.. ++|++ +...-..+..+.. ++. +.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 22222233 333331 22221 1122222222211 000 00
Q ss_pred -------HHH-------------HHHhCcHHHHHHhcCCCCcchH--HHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009679 276 -------IQA-------------VIEAGVCPRLVELLRHPSPSVL--IPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (529)
Q Consensus 276 -------~~~-------------~~~~~~~~~L~~lL~~~~~~v~--~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 333 (529)
... .+-.++++.+.+++..+++.-. ..-..++-.+....+...+.+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 000 1111466666777765544322 222233344455566667777788999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009679 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 413 (529)
Q Consensus 334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 413 (529)
+... +..+-+.|..+|..++.. .-.+..+.....+..++..|... +....-|+.+|..+......+........|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9877 666778899999999876 55666666666677777777653 45566899999999887666667777788999
Q ss_pred HHHHhccCC
Q 009679 414 KPLCDLLNC 422 (529)
Q Consensus 414 ~~L~~lL~~ 422 (529)
+.|+.+|+.
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999974
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.77 E-value=1.8e-06 Score=86.12 Aligned_cols=333 Identities=13% Similarity=0.121 Sum_probs=209.6
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
+..++..|.+.+ +.++.+|+..+..++.--..+ -..+...| -.|...|...++++.-..+.+|..|+....-.+.
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 345566777888 999999999999888621111 12233334 3466778888888887777777766532210000
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch-hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~ 272 (529)
.---.+++|.|..+| ++....++.++...+..+|...+.... ...-.+---|+.+|.+.+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 001235788888888 788899999999999999988744222 122233345778888889999999999999998653
Q ss_pred chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009679 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 352 (529)
... .++..|+.-|...+-..+....-+++-.+..+.. ..++|.|+.=...+ ...|+...+.+++-
T Consensus 957 GPq-------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 GPQ-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred CHH-------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 221 4455555555544433333333333333332211 24567777766777 77888888888887
Q ss_pred HhcCC-HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-------CCC
Q 009679 353 ITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPD 424 (529)
Q Consensus 353 l~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~~ 424 (529)
+.... .-...++.. +.|.|-+.|.+.|.--|..|+.++.+++.+.. -.|+.+.++-||. .+.
T Consensus 1022 ~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence 76521 122223332 78889999999999999999999999988642 1233333333332 456
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009679 425 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 425 ~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 496 (529)
|.++....+++..+-..- ...-.+..+.+=.-|+...|++..-.+++..+-.+
T Consensus 1092 Phviqa~~e~~eg~r~~L-------------------g~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVAL-------------------GPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred hHHHHHHHHHHHHHHHHh-------------------chHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence 777777777776553221 11112334444456888888888777777666543
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.4e-05 Score=70.19 Aligned_cols=342 Identities=14% Similarity=0.145 Sum_probs=226.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh---hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~---~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
+|.+-..|..++..+...++..+..++...+... +..++..++++.++.++-.++ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 5666677788889999999999999886542212 445668999999999999888 8999999999999998 7888
Q ss_pred HHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009679 150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 150 ~~~~~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
...+.++.....+ ..+-...+.-.|......+..+..-++.....+...|.+..|..-+....|.-+..++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8888887766543 33334456667777888888888888888888888999998888885557878888888888888
Q ss_pred hcCCCCCchhhhhchHHHHHHhhcc--CChHHHHHHHHHHHHhccCCch---hHHHHHHh--CcHHHHHHhcCCCCcchH
Q 009679 228 CRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL 300 (529)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--~~~~~L~~lL~~~~~~v~ 300 (529)
+.......+....+++..+..++.- .+|--.-.++...+.+.....- .-+.+++. -.+...++.+...++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 8766555555667888888888763 3443333344433333221100 00112221 234445566677888899
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCC--hHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHH---------H-HHH
Q 009679 301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQI---------Q-AII 365 (529)
Q Consensus 301 ~~al~~L~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~-~l~ 365 (529)
..|+.++|.+.+.. +..+.+.+.|- ...++.-..+.....-+..+..+|.+++. -.++++ . .+.
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 99999999998744 34555555442 23333333232133345667778888875 223322 1 111
Q ss_pred Hc-------CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 366 ~~-------~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
++ .-+..+..+++.+.++++..+...+..++.... -....+...++++...+
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW-alkeifakeefieiVtD 459 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW-ALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH-HHHHHhcCccceeeecc
Confidence 11 235566777888899999999999999987421 23333444455554443
No 72
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.76 E-value=1.2e-05 Score=82.53 Aligned_cols=410 Identities=15% Similarity=0.168 Sum_probs=233.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhh-------------------------------------cC
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ-------------------------------------SG 114 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~-------------------------------------~g 114 (529)
.+..+++.|...+.++|..|++++.-+.+.-+......+++ ..
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 46778888888888999999988886654432222222221 11
Q ss_pred ChHH----HHHhhcC-CCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 009679 115 VVPR----FIEFLSR-DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (529)
Q Consensus 115 ~i~~----Li~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 189 (529)
+.+. |...+.. ++...++..++.+++.+...-.+.... ...+++..++..+.++-..+|..++.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 2222 2222211 111235566666555554421111111 223445556666677788999999999999996554
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh---ccCChHHHHHHHHHHH
Q 009679 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---HSNDDEVLTDACWALS 266 (529)
Q Consensus 190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~L~ 266 (529)
. +. -.+++..+++-|.....+...+....+|..+|+.....--.....++|.+.+.. ..+|+++++.++.++.
T Consensus 207 ~--~l--y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 207 R--DL--YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred H--HH--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 2 22 223677788888677778888888999999998764444455678889998888 6778999999999998
Q ss_pred HhccCCchhHHHHHHhCcHHHHHHhcCC----------------------------------CCcchHHHHHHHHHHhhc
Q 009679 267 YLSDGTNDKIQAVIEAGVCPRLVELLRH----------------------------------PSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~----------------------------------~~~~v~~~al~~L~~l~~ 312 (529)
.+....+..+...+. .++..++..+.+ -+|.||+.|+.|+..+..
T Consensus 283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 877655443332222 344444444421 024589999999988876
Q ss_pred CChhhHHHHH------------------hcCChHHHHHHhccCC-------c-------------hhHHH----------
Q 009679 313 GDDMQTQCII------------------NHQALPCLLDLLTQNY-------K-------------KSIKK---------- 344 (529)
Q Consensus 313 ~~~~~~~~~~------------------~~~~l~~L~~lL~~~~-------~-------------~~v~~---------- 344 (529)
...+....+. ...++..++.+|.+.. + ..++.
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 4432222111 1233444444443210 0 01111
Q ss_pred ------------HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009679 345 ------------EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410 (529)
Q Consensus 345 ------------~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (529)
.+...|..+....|.....-+ ..++|.++..+.+. ....+..++..+.+....+.++...-...
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~-~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~- 519 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHI-PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS- 519 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcc-cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh-
Confidence 111111111111111110000 12567777777664 45678888888888877666665444322
Q ss_pred CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-hcCCCHHHHHHHHHHH
Q 009679 411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKIL 489 (529)
Q Consensus 411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-~~~~~~~v~~~a~~il 489 (529)
...+.+.....++-+++-..++-....++++-...+... .-+.++|...+-.+ .+..| ..+.+.+|+++|..++
T Consensus 520 ~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~-~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIscm 594 (1233)
T KOG1824|consen 520 ALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS-SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAISCM 594 (1233)
T ss_pred hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc-cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHHHH
Confidence 245555556666777877777777777776654332210 01234454444322 24444 4677899999998877
Q ss_pred HhhCC
Q 009679 490 ETYWV 494 (529)
Q Consensus 490 ~~~~~ 494 (529)
..|..
T Consensus 595 gq~i~ 599 (1233)
T KOG1824|consen 595 GQIIA 599 (1233)
T ss_pred HHHHH
Confidence 76654
No 73
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.6e-05 Score=79.50 Aligned_cols=255 Identities=15% Similarity=0.169 Sum_probs=181.6
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
+-+-++.+|++.. |-+|..|+.+++.+....|+..+. .+|.|..-|..+++.|+..|+..++.|+..+|...
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4466778888888 899999999999999866665443 56999999999999999999999999998887531
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHH--hccC
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSY--LSDG 271 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~--l~~~ 271 (529)
+ ..-|.+..++..+.+.=+.......+..|+--.| .....+++.|..++.+. -..+...|+.++.. ++.+
T Consensus 217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 2456677777555565566666777777765433 23457788888888765 34566666666543 3333
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
.++... .+. -++..|-.++.+.++.++..++.+++.+....+...+. --+.++.+|.+. +..+|..|...|-
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 212211 111 34667777888999999999999999999877755542 346789999998 9999999999998
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCC
Q 009679 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~ 399 (529)
.+... +++.. ++..|+..+... ....|.+.+.-+..+++..
T Consensus 362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 87753 33333 444566555544 3477877777777776643
No 74
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.8e-07 Score=89.93 Aligned_cols=309 Identities=14% Similarity=0.110 Sum_probs=198.3
Q ss_pred HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC
Q 009679 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253 (529)
Q Consensus 175 ~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~ 253 (529)
..++.+|-.++..-...|.-+.+..+.+.|++.| .+++..+...+...++|+.-.. +-.......+++..|++++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3444555666666566777788888999999999 6666666667777777776654 4445556689999999999999
Q ss_pred ChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh---hHHHHHhc----C
Q 009679 254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q 325 (529)
Q Consensus 254 d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~ 325 (529)
|..++....|.+.++.-+..+..+ .++..-++..++.+..++...++..++.++.|+...+.. .....++. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999866544322 244556789999999999999999999999999874332 22222221 2
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcC-----------ChhHHHHHHHHHH
Q 009679 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNA-----------EFEIKKEAAWAIS 393 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~-----------~~~v~~~a~~aL~ 393 (529)
++..++..+... +|-.-.+.|+.|.++++.+....+.++ +..++..+..+|... ..++-..-.+...
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 456667777776 666677779999999987555444444 344555555555321 1122222233333
Q ss_pred HHhcCCCHHHHHHHHHcCChHHHHhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009679 394 NATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 470 (529)
Q Consensus 394 nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l 470 (529)
++...++ .....+.. -+.+-..=+ .++.++..+..|.+.++.-..+..+.. +..-..++.+...|.-+-+
T Consensus 645 ~l~e~~d--~f~r~~~~--~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~l 717 (743)
T COG5369 645 NLSENSD--KFKRLVLT--TPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREWL 717 (743)
T ss_pred ccccccc--ccccceec--CCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHHH
Confidence 3333211 11110000 022222211 233456666777777743222111100 0112457888889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhh
Q 009679 471 ENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 471 ~~L~~~~~~~v~~~a~~il~~~ 492 (529)
..+|.++++.|++++...|..+
T Consensus 718 ~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 718 VKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 75
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.68 E-value=1.4e-06 Score=82.57 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=185.2
Q ss_pred hhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009679 107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 184 (529)
Q Consensus 107 ~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl 184 (529)
.+.+...|.+..|++++..++. ..++.+|++.|..+.. .++++.++..| +..++.+... +..++....+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3445567899999999998872 3569999999999986 78888888877 4555555443 6788999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhccCChHHHHHHH
Q 009679 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC 262 (529)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 262 (529)
..++.+....++..|++..++-.. ...++.+.+.++.+|.|.+.+. ..........+...|..+..+.|+-.+.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999888888899999999988877 6678999999999999988775 2223334456666787787788888999999
Q ss_pred HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009679 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (529)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 342 (529)
.+++.|+.+.+ ....+.++|.+..+-.++.+-++..... --...+.+. ....++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence 99999987753 3345666676665555555544432111 001111111 123467788888876 5555
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009679 343 KKEACWTISNITAGNVN--QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~--~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
+..+++-++.=+.-... ....+-+-|.+..|-++.++.+.--.+-|..+|.-+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 55555555433331111 122334567788888888876544444455555444
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.67 E-value=1.2e-05 Score=78.84 Aligned_cols=335 Identities=13% Similarity=0.137 Sum_probs=211.5
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
++..++..|.+.. |+++..|+...+.++.--. .....+...| ..|...|...++++.-..+.+++.|..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4567778888888 9999999998888775111 1122333444 346667777888888888888877764321 11
Q ss_pred H-HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchh-hhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009679 193 D-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 193 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
. .---.|++|.+..+| .+....+..+....+..+|...|..... ..-.+---|+.+|.+.+.+++.+|..+++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 011346889999999 7778888999999999999887543222 112333457788888999999999999999986
Q ss_pred CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009679 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
.-... .++..|+.-|...+-..+....-+++-.+..+. -..++|.|+.=...+ ...|+.....++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 53322 445556655555443333333333333333211 124566666666666 777888888888
Q ss_pred HHHhcCC-HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc----CCCCH
Q 009679 351 SNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL----NCPDP 425 (529)
Q Consensus 351 ~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL----~~~~~ 425 (529)
+-+.... .....++.. +.|.|-+.|.+.|+--|..|...+.+++.++.... ..++.-.|+++| -.+.|
T Consensus 825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg-----~eda~IHLlNllwpNIle~sP 897 (975)
T COG5181 825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG-----DEDAAIHLLNLLWPNILEPSP 897 (975)
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc-----cHHHHHHHHHHhhhhccCCCc
Confidence 7766521 222333333 77888889999999999999999999988653110 001122333333 35677
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 426 ~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
.++....+++..+...-. ..-.+..+++=.-|++..|+.+.-...+..+-.
T Consensus 898 hvi~~~~Eg~e~~~~~lg-------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 898 HVIQSFDEGMESFATVLG-------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 777777777766543321 111234555556789999988876666665543
No 77
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.4e-06 Score=90.08 Aligned_cols=255 Identities=16% Similarity=0.204 Sum_probs=193.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+|.+++-|-|+ --|+.|+..|...+... .-.+.....-|++|..+++|+++. .+++---+.+-..|..-++.+..
T Consensus 473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 445555544442 34567888888888664 555666678899999999999998 89999999999999888899999
Q ss_pred HHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 152 VVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
.+++.++-..+++.|.. -+++-|..|+.+|+.++..-+-.++.+++.+.+...+..+..+..+-++..++-+|..|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 99988888888888876 246899999999999998777778888898999988888855456778889999999999
Q ss_pred cCCCCCchh-hhhchHHHHHHhhccCChHHHHHHHHHHHHhccC----CchhHHHH------------HHhCcH---HHH
Q 009679 229 RGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRL 288 (529)
Q Consensus 229 ~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~~---~~L 288 (529)
.+.+..... ....+...|..+|.++-++|+..++.+|+.+..+ .++....+ ++.-+. -.+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 887444333 3467888999999999999999999999998865 22222221 222222 256
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 009679 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL 330 (529)
Q Consensus 289 ~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 330 (529)
+.++++..+-++....-+|+.++.+.......+.-....+-.
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~ 750 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES 750 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence 667788888889888888999888777666555443343333
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3e-05 Score=78.33 Aligned_cols=324 Identities=18% Similarity=0.209 Sum_probs=191.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..+-+.|+.+|+.+|-.|++++..+ +-+.+.- =++-.+-+...+.. +-+|..|+.+|-.+-+-+++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaP----I~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI----RVPMIAP----IMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHH----HHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 355666677777777776666666543 1111111 11223344555666 88899999998888877777766
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.+ +..+-.+|.+.++-|.-.|+.++-.+|-+.- +.+ .+-...+.++| .+-+.=-+..+...|..-|+..
T Consensus 180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 44 3566677888888888888888888875432 222 12345566665 3222222333334444434433
Q ss_pred -CCCc----------------------------hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh
Q 009679 232 -PQPL----------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (529)
Q Consensus 232 -~~~~----------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 282 (529)
+.+. ..-..-++...-.+|.+.++.|...++.+..+++... ...
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~----- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT----- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence 1110 0111234445556778889999999999999997543 222
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHH
Q 009679 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQI 361 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~ 361 (529)
.++..|+.+|.+. ..++...+..+..++...+... .|.+..+.-.+. ...++..-..+|++|+....-
T Consensus 322 ~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni-- 390 (968)
T KOG1060|consen 322 KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESNI-- 390 (968)
T ss_pred HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccH--
Confidence 5678888888764 3567777888888776544221 244444432221 234555556677777653111
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
. .+++.+...+.+.+..+...|+.+|+.++.... . +...++..|+.++++.+..|+..+.-.|..+++.
T Consensus 391 ~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 391 S-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred H-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 1 145566666666666677777777777765432 1 2233566777777777777777777777777766
Q ss_pred hhh
Q 009679 442 GEA 444 (529)
Q Consensus 442 ~~~ 444 (529)
.+.
T Consensus 460 ~p~ 462 (968)
T KOG1060|consen 460 DPA 462 (968)
T ss_pred ChH
Confidence 544
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=7.4e-06 Score=81.02 Aligned_cols=319 Identities=18% Similarity=0.167 Sum_probs=198.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHH-HHHHHHHHhcCChhhHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE-AAWALTNIASGTSENTR 151 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~-a~~~L~~l~~~~~~~~~ 151 (529)
++.+.+.+.+.....+..++..+..+.. ...+..+.+.+++..|...+.+.. ...+.+ ++.+...... .-.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~-~Lg--- 207 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQG-NLG--- 207 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHH-hcC---
Confidence 4555566666666677777777766653 334555666778888888887766 333333 3322222222 100
Q ss_pred HHHhCC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 152 VVIDHG---AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 152 ~~~~~g---~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
...+.+ .+|.++....+....+|+.+..+.-.+...-+...- .-.++.++.-+ ..........++..+..+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l-~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSL-LEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHH-HHHhhhhHHHHHHHHHHHH
Confidence 112223 345555555567788888888887776533221110 11345555544 2235567778888888888
Q ss_pred cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch-hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009679 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
...|.........++|.+.+.|-+.+++++..+..++..++.-.+. -++ .++|.|+..+.+++..+ ..++..|
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L 356 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSL 356 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhh
Confidence 7766666677889999999999999999999999999988854321 122 46788888888876333 3344444
Q ss_pred HHhhcCC--hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 308 GNIVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 308 ~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
+.-..-. +...- .-++|.|..-+... +..+++.++.++.|++.- ++.....++.. ++|.|-..+.+..|+
T Consensus 357 ~~ttFV~~V~~psL----almvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 357 GATTFVAEVDAPSL----ALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPE 430 (569)
T ss_pred cceeeeeeecchhH----HHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChh
Confidence 4322111 11111 12345555555555 778889999999999983 45555555543 778888888888999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 421 (529)
+|..+..+|+.+........ + .+.++.+...+.
T Consensus 431 vR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 431 VRAVAARALGALLERLGEVS---F--DDLIPELSETLT 463 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence 99999999999876432111 1 345555555553
No 80
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.64 E-value=2.1e-06 Score=81.36 Aligned_cols=266 Identities=14% Similarity=0.098 Sum_probs=174.4
Q ss_pred ccHHHHHHhhcCCCHHH--HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009679 71 ESLPAMVAGVWSDDRNI--QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
+.+..+++++.+++.+. +.++.+.|..++..+ +.+.+..-| +..++.+-+....++++...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 57889999999887654 899999999998654 345555544 444445544444478999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009679 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 227 (529)
....++..|++..++......++.+..+|+.+|+|++.+ ....+..+++..+-+.|..+. .+.|.-++..+|.+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999988999999999999999854 345566777777777777776 556888899999999999
Q ss_pred hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009679 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
+..+.........+.+..+-.++.+-|+.-- +....+..+ -....-++.|+.+|++..-+.+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 9887444444445555554455555454321 111111111 01114567888888865433332222222
Q ss_pred HHhh--cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009679 308 GNIV--TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 308 ~~l~--~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
..=+ ..-......+-+-|.+..|..+..++ +..-.+.|-.+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 1111 11111223344668888888888876 544344444444433
No 81
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.8e-07 Score=87.04 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=191.0
Q ss_pred HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009679 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (529)
Q Consensus 109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 188 (529)
.+.+..+...|+++|+.++ ..+..-+...++|..-.-+..+..+++.|++..|+.++.+.+..++....|.+..+...+
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3456678899999999987 677788888899988877788889999999999999999999999999999999988544
Q ss_pred c-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC--Cchhhh------hchHHHHHHhhccCChHHHH
Q 009679 189 P-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT------RPALPALERLIHSNDDEVLT 259 (529)
Q Consensus 189 ~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~ 259 (529)
. ..+-..+...++..++.+. .++.-.++..++..|.|+.-+... ...... .-....++..+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 3 2334556666788999998 788889999999999999774311 111111 23556677777777777777
Q ss_pred HHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC-----------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCCh
Q 009679 260 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (529)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~-----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 327 (529)
..|..|.+++..++.....+.+. .++..+.++|.. ....+..+-....-++....+.......-.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~--- 660 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT--- 660 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence 77899998887766555544443 445555554421 112333344444444444323222211100
Q ss_pred HHHHHHhc--cCCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009679 328 PCLLDLLT--QNYKKSIKKEACWTISNITA---G------NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 328 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
|.+=..=. ...+.++-.+..|.+-|+.- + +.+.++.+.+.|+-+.+..+...+++.||+.+-.+|.++
T Consensus 661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11111111 11145677888898888654 2 225566677888878777777777889999999999886
No 82
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.4e-05 Score=77.19 Aligned_cols=360 Identities=13% Similarity=0.155 Sum_probs=230.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
-+|..++.+.+.+.+++...-..|...+....+ ..+. -|..+-+-|++++ +-+|..|+++|..|--
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd---LALL---SIntfQk~L~DpN-~LiRasALRvlSsIRv------- 137 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD---LALL---SINTFQKALKDPN-QLIRASALRVLSSIRV------- 137 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC---ceee---eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence 578888888899998888877777776644311 1111 3678888999998 8999888888766654
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.++..=++-.+-++..++.+-||..|+.+|-.+..-.++.++.+ ..++..|..+.++-+...|+.++-..|-+.
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL------~e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL------EEVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH------HHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 12211123344456667889999999999999987766655543 234444447788889999998888877543
Q ss_pred CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---Cchh----------------------HHHHHHh---C
Q 009679 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDK----------------------IQAVIEA---G 283 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~----------------------~~~~~~~---~ 283 (529)
...+.+-...+..+|.+-++.-+..++..|...+.. .+.. .....+. -
T Consensus 212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 445556666777777666666566666655544432 0000 0000010 1
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009679 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (529)
++...-.+|.+.++.+...++++...++-.+. . ..++..|+.+|.+. +.++......+..++...+....
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~- 357 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFE- 357 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhh-
Confidence 23334455677888899999999998886432 2 24567888888764 56777777777777765555332
Q ss_pred HHHcCCHHHHHHHH--hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 364 IIEAGIIGPLVNLL--LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 364 l~~~~~l~~L~~~l--~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
|.+-... .++...++..=+..|.+++...+. .. ++.-|..++++.|..+...+..+|+.....
T Consensus 358 -------P~lKsFfv~ssDp~~vk~lKleiLs~La~esni---~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~ 422 (968)
T KOG1060|consen 358 -------PHLKSFFVRSSDPTQVKILKLEILSNLANESNI---SE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASR 422 (968)
T ss_pred -------hhhhceEeecCCHHHHHHHHHHHHHHHhhhccH---HH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 3333322 223446777778888998875432 22 456677888888888888888888876544
Q ss_pred hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009679 442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 497 (529)
.... ..-++.-|..|..+.+.-|-..|...|.++...+.
T Consensus 423 ~~sv-----------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 423 IGSV-----------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred hCch-----------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 3221 12235556666666677777777777777766543
No 83
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.8e-05 Score=82.39 Aligned_cols=256 Identities=16% Similarity=0.146 Sum_probs=167.0
Q ss_pred ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH
Q 009679 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 279 (529)
Q Consensus 200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 279 (529)
+++.+-.+. .+.+..++...+..+..+.--. +....+....|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus 399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~--~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 399 ILPEVQVLV-LDNALHVRSALASVITGLSPIL--PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhHHHHHHH-hcccchHHHHHhccccccCccC--CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 334443333 4555555555554444433222 2233446778888889999999999999988876654333222234
Q ss_pred HHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CC
Q 009679 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GN 357 (529)
Q Consensus 280 ~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~ 357 (529)
.....++.+..+-....+.++...++.+..++.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |.
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc
Confidence 445677888888877788899999999888876433 2344444556666666665 67899999988888876 31
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009679 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 437 (529)
Q Consensus 358 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~ 437 (529)
.-.+ ...++.++.....++...|...+.++.-++...+.+. ....+++.+.++..++.+.|+..++..|..
T Consensus 552 ~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 552 EWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred chhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 1111 2267777777777778899998888888776544333 334578899999999999999999999998
Q ss_pred HHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 009679 438 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486 (529)
Q Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~ 486 (529)
+...-.... .+.-..+.++.|..+++.+++-+|.
T Consensus 623 i~~~L~~~~---------------~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 623 ILKLLDESV---------------RDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred HHhhcchHH---------------HHHHHHHHHHHhccCcccchhHHHH
Confidence 876543211 1222344555555566666655543
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.54 E-value=2.8e-05 Score=76.28 Aligned_cols=241 Identities=17% Similarity=0.050 Sum_probs=165.6
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.++.++..|. .+++.+...++..+.. .+ .+ ..+..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 4556666655554432 11 11 13778888888887 7899999888876554
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
....+.|+.+|.+.++.++..++.+++..-. ...+.+...| ++.++.++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2346778888888888898888877776321 1345677777 688889999999999887653
Q ss_pred CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
..++.|...+.+.++.|+..+++++..+.. . ..+..+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 456667788888899999999999877643 1 2234444444444444444444444443
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 390 (529)
+.+ ..++.|..+++++ .++..++++++.+... . .++.|+..+.+. .++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p--~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV--E---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc--c---------hHHHHHHHhcCc--HHHHHHHH
Confidence 222 4678888888776 3899999999977543 2 678888888643 49999999
Q ss_pred HHHHHhc
Q 009679 391 AISNATS 397 (529)
Q Consensus 391 aL~nl~~ 397 (529)
++..++-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999975
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.5e-05 Score=76.71 Aligned_cols=317 Identities=15% Similarity=0.097 Sum_probs=162.8
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q 009679 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201 (529)
Q Consensus 122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i 201 (529)
=|++++ +-+|-..++.|+.+-. ++... ..+|.+...|.+.+.-||.+|+.++..|..... ..+ .++-
T Consensus 107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap 173 (948)
T KOG1058|consen 107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP 173 (948)
T ss_pred hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence 355666 6677777777766654 33332 456888889999999999999999998864421 111 1233
Q ss_pred HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHHhccCCchhHHH
Q 009679 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA 278 (529)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~~~~~~~~ 278 (529)
+.+-..|....|+..+++|+..|...-.. .++..|...+. +-++..+......|...+...+...
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-- 241 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-- 241 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh--
Confidence 34445555666788888877666543221 11222222111 1233344444444444443222211
Q ss_pred HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH---------------------------------HHHHhcC
Q 009679 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT---------------------------------QCIINHQ 325 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~---------------------------------~~~~~~~ 325 (529)
...+..+..+|.+.++.++..|..+|-+++....... ..+++ |
T Consensus 242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~ 317 (948)
T KOG1058|consen 242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-G 317 (948)
T ss_pred ---hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-H
Confidence 1234444555544444444444444433332111000 00111 2
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHhcC------ChhHHHHHHHHHHHHhcC
Q 009679 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLNA------EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-~l~~~------~~~v~~~a~~aL~nl~~~ 398 (529)
.+--++.+|.++ +-++|+.+......++.. .++..+++ .|-. +.+.. ....|.....++..++..
T Consensus 318 l~mDvLrvLss~-dldvr~Ktldi~ldLvss--rNvediv~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 318 LIMDVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVEDIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHHHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 233344445555 556666655555555432 11111111 1111 11111 223456666666666554
Q ss_pred CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCC
Q 009679 399 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 478 (529)
Q Consensus 399 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~ 478 (529)
- ++.. ..+++.|++.+.+.++..-..++..+...++..++.. ...++.. ++.+-.-.+
T Consensus 390 F-p~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-----------~~ii~~l-----~~~~~~irS 447 (948)
T KOG1058|consen 390 F-PEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-----------ASIIEKL-----LETFPQIRS 447 (948)
T ss_pred C-hHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-----------HHHHHHH-----HHhhhhhcc
Confidence 2 2332 2367888888888888777777777776665544321 2222221 333334456
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 009679 479 TEIYEKAVKILETYWVEED 497 (529)
Q Consensus 479 ~~v~~~a~~il~~~~~~~~ 497 (529)
.+++.-|.||+..|..++.
T Consensus 448 ~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 448 SKICRGALWILGEYCEGLS 466 (948)
T ss_pred cccchhHHHHHHHHHhhhH
Confidence 7889999999999998876
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.51 E-value=3.6e-05 Score=75.55 Aligned_cols=244 Identities=18% Similarity=0.064 Sum_probs=170.1
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
..++.++..|.....+.+...+++++..... +. ++..|+..|.+.++.++..++.+|+.+-..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------ 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGGR------ 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCch------
Confidence 3678888888543337777766655532221 11 378899999999999999999999876321
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
.....|+.++ .+.++.++..++.++...- ....+.+..+|.+.++.|+..++.+|+.+...
T Consensus 117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 2456788888 7778888888887766521 22456788889999999999999999998643
Q ss_pred hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009679 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 274 ~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
..++.|...+.+.++.|+..|+..++.+.. + ..++.+..+.... .......+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 345667778999999999999999987743 3 1234455544443 333443333344333
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009679 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433 (529)
Q Consensus 354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~ 433 (529)
+.+ ..++.|..++.++. ++..++++++.+-.. ..++.|+..+.+. .+...+.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHH
Confidence 323 26778888887644 999999999987542 3577788877644 38899999
Q ss_pred HHHHHHHh
Q 009679 434 GLENILKA 441 (529)
Q Consensus 434 aL~~l~~~ 441 (529)
++..|.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99988754
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00077 Score=67.69 Aligned_cols=327 Identities=17% Similarity=0.140 Sum_probs=196.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
.-+-++.|+++--....-+-..+.-++... .+..+. ++..+.+=|.+.+ +....-|+.|++|+.+ -+.+..
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea 146 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA 146 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence 344556666554444444444554444322 222222 3345555566666 7889999999999986 444444
Q ss_pred HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 153 VIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
+. +-+-++|.++ ..-++..++.+|..+...+|+ .+-..+....++.+| .+.+..+...+...+..|+..
T Consensus 147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence 43 2233666553 366888888888888877654 333335678889998 666677777777777777776
Q ss_pred CCCCchhhhhchHHHHHHhhc-------------cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--
Q 009679 231 KPQPLFEQTRPALPALERLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-- 295 (529)
Q Consensus 231 ~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-- 295 (529)
.|..........+..|..+.. -+.|.++..+++.|.++-.-.+.... ..-..+++.++...+.+
T Consensus 218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPK 296 (938)
T ss_pred CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCcc
Confidence 644433333344444443332 13577888888888887432221111 11113444444444421
Q ss_pred Ccc-----hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009679 296 SPS-----VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370 (529)
Q Consensus 296 ~~~-----v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 370 (529)
... .....+.-.-+++.+-+..-..+. ..+..|-++|.+. ...+|.-|...++.++.. ...+..+-.+ .
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~ 370 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--Q 370 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--H
Confidence 111 222233333444443333322222 4677888999888 888999999999998885 2223333333 6
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHH
Q 009679 371 GPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 432 (529)
Q Consensus 371 ~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l 432 (529)
..++..|+ ..|..+|+.|+..|..++... ..+. ++.-|+++|.+.|+.+++-..
T Consensus 371 d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 371 DTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHHH
Confidence 67888888 569999999999999998754 4343 455677788888887776543
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=98.49 E-value=0.00039 Score=71.23 Aligned_cols=380 Identities=15% Similarity=0.117 Sum_probs=229.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh--hhHHhhcCChHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA 143 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~~i~~g~i~~Li~lL~~~~------~~~v~~~a~~~L~~l~ 143 (529)
.+.+.+..|++.+-+.++.++..+.+++...+... .+.+.+.=+.+.|-++|.++. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57888999999888888999999999987643212 234666666778888887732 1456788888999998
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009679 144 SGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (529)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 222 (529)
. +++....---.+-||.|+..+.+.+. .+...|+.+|..++.. +..+..+.+.|.++.|...+.+ .+.....++.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 8 55543221122579999999988666 9999999999999944 5568899999999999999844 4455677777
Q ss_pred HHhhhhcCCCC----CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchh-HH----HHHHhCcHHHHHHhcC
Q 009679 223 TLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQ----AVIEAGVCPRLVELLR 293 (529)
Q Consensus 223 ~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~-~~----~~~~~~~~~~L~~lL~ 293 (529)
++.+++..... ........+++.+...+.......+..+|..|..+-...+.. .. .-.-..+...+..+|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 77777665421 122333466677777777777777888899998887655211 11 1111234445555665
Q ss_pred C-CCcchHHHHHHHHHHhhcCChhhHHHHH-hc-----CChHHHHHH---------------hccCCchhH--HHHHHH-
Q 009679 294 H-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDL---------------LTQNYKKSI--KKEACW- 348 (529)
Q Consensus 294 ~-~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~-----~~l~~L~~l---------------L~~~~~~~v--~~~a~~- 348 (529)
+ ..+.-|.+++...+.+..... .+.++ +. .++-.++++ .+.+..... +-.+|+
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ 319 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS 319 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence 5 345667777777777764311 11111 11 111111111 111100111 111222
Q ss_pred ----HHHHHhc--------CCHHHHHHHHH--cCCHHHHHHHHhcC------ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009679 349 ----TISNITA--------GNVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFLV 408 (529)
Q Consensus 349 ----~L~nl~~--------~~~~~~~~l~~--~~~l~~L~~~l~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 408 (529)
.+..++. -.++....+.. .+.+..++++|.+- ++.....++.+|+......+....+.+
T Consensus 320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v- 398 (543)
T PF05536_consen 320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV- 398 (543)
T ss_pred HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence 1122222 13444444443 34566666666642 333666788899888876554444443
Q ss_pred HcCChHHHHhccCCCCH----------HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHH
Q 009679 409 SQGCIKPLCDLLNCPDP----------RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 472 (529)
Q Consensus 409 ~~~~l~~L~~lL~~~~~----------~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~ 472 (529)
.+.++.|+++...... +.+...+=+|..+..-. ..+..+...||.+.+.+
T Consensus 399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~-------------~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE-------------EGRKILLSNGGWKLLCD 458 (543)
T ss_pred -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH-------------HHHHHHHhCCcHHHHHH
Confidence 3688899988864322 34555555666554322 23666666777666554
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00015 Score=65.70 Aligned_cols=275 Identities=14% Similarity=0.136 Sum_probs=176.7
Q ss_pred HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH
Q 009679 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (529)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 281 (529)
..++.++ .+.++.++..|..-+..++......-.......++.+.+++...++ ...+..++.|++....-+ ..+++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-KKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-HHHHH
Confidence 3567777 7788999999998888887762111122234567778888887766 778899999999875433 44555
Q ss_pred hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH------hcCChHHHHHHhccCCchhH-HHHHHHHHHHHh
Q 009679 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT 354 (529)
Q Consensus 282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~ 354 (529)
. ++..++..+.++........+..+.|++...+....... +.+.+.....+..++.+... -...+.+++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 888888999998888999999999999986554433322 24555555666655533211 245567778887
Q ss_pred cCCHHHHHHHHHcCCHH-HHHHHHhcCChhHHHH-HHHHHHHHhcCCC---------HHHHHHHHH-------------c
Q 009679 355 AGNVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKE-AAWAISNATSGGS---------NEQIKFLVS-------------Q 410 (529)
Q Consensus 355 ~~~~~~~~~l~~~~~l~-~L~~~l~~~~~~v~~~-a~~aL~nl~~~~~---------~~~~~~l~~-------------~ 410 (529)
.. +..+..+.....++ ..+.-+.+.+..+|+. .+..|.|++.... .....++.- .
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 75 44455555433222 1122233345556544 6677788775431 111111110 1
Q ss_pred CChHHHHhccC-----CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-hcCCCHHHHHH
Q 009679 411 GCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEK 484 (529)
Q Consensus 411 ~~l~~L~~lL~-----~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-~~~~~~~v~~~ 484 (529)
+...-| ++|. .+|+.++...+++|..|+.-.. .++.+.+.|+...+..| ...+++++...
T Consensus 240 ~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~~~a 305 (353)
T KOG2973|consen 240 KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDIREA 305 (353)
T ss_pred cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence 112222 4443 4678999999999987764332 48889999999999998 45688999998
Q ss_pred HHHHHHhhCCCC
Q 009679 485 AVKILETYWVEE 496 (529)
Q Consensus 485 a~~il~~~~~~~ 496 (529)
+.++.+-....+
T Consensus 306 ce~vvq~Lv~~e 317 (353)
T KOG2973|consen 306 CEQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHHhcc
Confidence 888887777643
No 90
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00012 Score=76.22 Aligned_cols=304 Identities=12% Similarity=0.179 Sum_probs=198.1
Q ss_pred hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009679 69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (529)
Q Consensus 69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~ 147 (529)
-++.++-++..|. ..++.++..|+..+..+.+. .+....+...|.+..|+.+|.+. |..|..++.+|+.+++ ++
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence 4566777777777 57788999999999887654 46788889999999999999775 6899999999999999 77
Q ss_pred hhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---chhHHHHHh----------cCChHHHHHHhccc-h
Q 009679 148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPLLAQFNEH-A 212 (529)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~~~i~~l~~~l~~~-~ 212 (529)
+......+.|++..+..++.. .+...|.+++..++.+..+. |..+-.++. .+.-+..+..+... .
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 777778888888887776644 67899999999999997543 222111111 01123334444211 1
Q ss_pred hH------HHHHHHHHHHhhhhc----CC---C--------------------------------------CCchhhhhc
Q 009679 213 KL------SMLRNATWTLSNFCR----GK---P--------------------------------------QPLFEQTRP 241 (529)
Q Consensus 213 ~~------~~~~~a~~~L~~l~~----~~---~--------------------------------------~~~~~~~~~ 241 (529)
++ ..+......+..+.. .. | ........+
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 11 112222222222211 00 0 001122244
Q ss_pred hHHHHHHhhccCCh--HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009679 242 ALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (529)
Q Consensus 242 ~l~~L~~ll~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 319 (529)
++..+..++..+++ ....-.-.++..|....+...+.+-..|.+|.++..+.+.+..+-..|++.|..++. +..+..
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHH
Confidence 55555666654432 222223333444444444445555556999999999988888888999999999987 445566
Q ss_pred HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009679 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~ 380 (529)
.......+..++..+... +...--|+.+|..+.. ...+.....++.|++|.|+.+|+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 666667777788888654 2334477788877765 4456666777899999999999764
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00079 Score=67.61 Aligned_cols=301 Identities=14% Similarity=0.139 Sum_probs=176.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009679 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (529)
Q Consensus 119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (529)
-+++|+++..++ +.-.--.+.-+...+.+..+.+ +..+..=|.+.++.....|+.+++|+-+. +.++.+.
T Consensus 79 aV~LLss~kysE-KqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-- 148 (938)
T KOG1077|consen 79 AVNLLSSNKYSE-KQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-- 148 (938)
T ss_pred HHHHhhcCCccH-HHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--
Confidence 457777665222 2222222223333333333332 34555566677888889999999998532 2333322
Q ss_pred CChHHHHHHhcc-chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHH
Q 009679 199 GALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (529)
Q Consensus 199 ~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~ 277 (529)
..+-++|.. +...-++..++.+|..|.+..| +.....+-...++.+|.+.+-.|...+...+..|+...++...
T Consensus 149 ---~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp--Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 149 ---DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP--DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred ---hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc--cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 223355533 3355677888888888887743 3333345667889999988888888888888888866554433
Q ss_pred HHHHhCcHHHHHHhcC-------------CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhH-
Q 009679 278 AVIEAGVCPRLVELLR-------------HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSI- 342 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL~-------------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v- 342 (529)
..+. -.+..|..+.. -+.|-+....++.|.++-...+.....-+ ..+++.++...+.+. ...+
T Consensus 224 ~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 224 TCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred hhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccchH
Confidence 1111 12222222221 14566788888888888554443332211 134444544444221 1222
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 343 ----KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 343 ----~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
+....+-.-+++.+-+..-..+.. .+..|.+++.+.++.+|--|...++.++.... ....+. . -.+.++.
T Consensus 302 ~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK-~-h~d~Ii~ 375 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVK-K-HQDTIIN 375 (938)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHH-H-HHHHHHH
Confidence 222333333444421111112222 67789999999999999999999999998632 222222 2 2677888
Q ss_pred ccC-CCCHHHHHHHHHHHHHHHHhh
Q 009679 419 LLN-CPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 419 lL~-~~~~~v~~~~l~aL~~l~~~~ 442 (529)
.|+ ..|..++..+++.|+.++..+
T Consensus 376 sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 376 SLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HhccccchHHHHHHHHHHHHHhchh
Confidence 888 789999999999999998765
No 92
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.4e-05 Score=69.02 Aligned_cols=270 Identities=15% Similarity=0.125 Sum_probs=166.4
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
...++.++.+.+ |.++..|+..+..++.. .-+.+. +...++.+.+++....+ .+.|+.++.|++.+. ..++
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence 346789999999 99999999999999884 111222 23467888888887555 788999999999765 4677
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh--h-----hchHHHHHHhhccCC--hHHHHHHHHH
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--T-----RPALPALERLIHSND--DEVLTDACWA 264 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~-----~~~l~~L~~ll~~~d--~~v~~~a~~~ 264 (529)
.++.. .+..++..+ .+........+|.+|+|+++......... . .+.+.....+....- ..-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77665 566666666 55556678889999999998762221111 1 223333333333221 2335566777
Q ss_pred HHHhccCCchhHHHHHHhCc--HHHHHHhcCCCCcchH-HHHHHHHHHhhcCChhhHHHHHh--cCChHHHH--------
Q 009679 265 LSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPSPSVL-IPALRTVGNIVTGDDMQTQCIIN--HQALPCLL-------- 331 (529)
Q Consensus 265 L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~v~-~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~-------- 331 (529)
+++++.....+ ..+.+... ...+..+-. .+..+| ...+.+|-|+|.....+- .+++ .+++|.|+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence 78888765544 22333322 222333333 344444 447788888876544332 2332 12233222
Q ss_pred -------------HHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHH
Q 009679 332 -------------DLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS 393 (529)
Q Consensus 332 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~ 393 (529)
+.|.. ..++.+|+...-+|.-+|+. ...++.+...|+.|.+-.+-+.. +++++ .+|.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 33321 12678999999999999886 56677788888888777766655 55554 4666666
Q ss_pred HHhcCC
Q 009679 394 NATSGG 399 (529)
Q Consensus 394 nl~~~~ 399 (529)
++....
T Consensus 311 q~Lv~~ 316 (353)
T KOG2973|consen 311 QMLVRL 316 (353)
T ss_pred HHHHhc
Confidence 665543
No 93
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.4e-05 Score=68.05 Aligned_cols=302 Identities=14% Similarity=0.123 Sum_probs=197.1
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHH--HHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009679 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~L--i~lL~~~~~~~v~~~a~~~L~~l~~~~ 146 (529)
+-+.++.++.++..+|.++-..|...+..+... ......+.++.....+ .++-...+ .-.|......+..+.+-+
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSIS 202 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcC
Confidence 346688999999999999999999999887643 2344555555555433 22323333 567888889999999989
Q ss_pred hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHH
Q 009679 147 SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTL 224 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L 224 (529)
++....+-.+|.+..|..-+.. .+.-++..|+.....++...- .++.+.+.|.+..+...+... ++|--.-.++...
T Consensus 203 pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgf 281 (524)
T KOG4413|consen 203 PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGF 281 (524)
T ss_pred HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 9999999999999999988887 778889999999999985432 477888889888888888422 2332222233333
Q ss_pred hhhhc----CCCCC--chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCc--HHHHHHhcCC-C
Q 009679 225 SNFCR----GKPQP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRH-P 295 (529)
Q Consensus 225 ~~l~~----~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~-~ 295 (529)
..+.. .+-.+ .-....-.+.....++..+|++.+..++.+++.+..+... .+.+.+.|- ...++.-..+ +
T Consensus 282 gkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 282 GKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccc
Confidence 32222 22011 1111123344556777789999999999999999876543 355555442 3334333333 3
Q ss_pred CcchHHHHHHHHHHhhcCCh-----------h--hHHHHH-------hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 296 SPSVLIPALRTVGNIVTGDD-----------M--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 296 ~~~v~~~al~~L~~l~~~~~-----------~--~~~~~~-------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
...-+..++++|.+++.... . .+..++ +..-+..+..+++.+ .++++..+..++..++.
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHc
Confidence 33456778889988875311 0 111111 113355677788888 89999999999999998
Q ss_pred CCHHHHHHHHHcCCHHHHHHH
Q 009679 356 GNVNQIQAIIEAGIIGPLVNL 376 (529)
Q Consensus 356 ~~~~~~~~l~~~~~l~~L~~~ 376 (529)
..-.....+-..+++..+.+.
T Consensus 440 qPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 440 QPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred CcHHHHHHhcCccceeeeccc
Confidence 744444334456666665543
No 94
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=2.7e-05 Score=75.80 Aligned_cols=317 Identities=11% Similarity=0.080 Sum_probs=197.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+++++.++...|..++..|+..+.+++...+... ...-..+...+.++..+.+ ..++ .++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd-~~V~-~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSD-QNVR-GGAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCc-cccc-cHHHHHHHHHHHhccccc
Confidence 47888999999999999999988888765432111 1122335566777766665 4444 344444444431111111
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 152 -~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
.+-=.+.+|.|-.-+...++..|...+.-|..+-... . .+.+- -..+++.|+.+| .+.+.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 1111244555555555567778777776666654332 2 23321 223567778888 67777887777777776655
Q ss_pred CC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc-hHHHHHHH-
Q 009679 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRT- 306 (529)
Q Consensus 230 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-v~~~al~~- 306 (529)
.- ..+........++.++..+.++++.++..|+.-|..+..-.... -...-+|++..+++++.+..+. +...+..+
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 43 33333355678899999999999999988877777776554432 2234458888888888876653 44433322
Q ss_pred --HHHhhcCChhhHHHHHhc-CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 307 --VGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 307 --L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
+..++.... ..+. ++. .+++.+.+.+.+. ..+.|.++..-+..+-...|.+. ......+++.|+.-|++.+.+
T Consensus 317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence 222222111 1111 222 3567788888887 78888888765555555434433 223456899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 009679 384 IKKEAAWAISNATSGGS 400 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~ 400 (529)
|...++..+.+++....
T Consensus 393 vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999999998643
No 95
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=9e-05 Score=77.35 Aligned_cols=387 Identities=12% Similarity=0.097 Sum_probs=254.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
+..-+..+..++.++..++..+..+++.. .......++++.+.++..+.. ..+++.|...+.++...-.... -
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d 312 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--D 312 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--h
Confidence 33333445677888888888888876543 225567789999999999888 7899999998888876221111 1
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-
Q 009679 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP- 232 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 232 (529)
...-+.+.+++...+++..++.........++..-. ........+++...++ .....+....++.-...++....
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCc
Confidence 223456888888888888888777766666542211 1111222356666666 44445555555544444544432
Q ss_pred -CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 233 -QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 233 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
.........++|.+..+..+.+..++...+..+..+..-.+. ...+ ....+.+...+.+..+.++....+.+..+-
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 122223355678888888888999988888777776533220 1011 145677777888888899988888777766
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009679 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a 391 (529)
..++...........++.+..+-... .++++.+..+.+-.++.... ..+.+...-+.+...+.+....+++.|+..
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 55554444445557788888888777 88999999998888876311 233343355566666777778999999999
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHH
Q 009679 392 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 471 (529)
Q Consensus 392 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~ 471 (529)
+..++..-+.+.. ....++.++.....++...+..++.++..+.....+. +.....++.+.
T Consensus 542 l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------------i~~~~Llp~~~ 602 (759)
T KOG0211|consen 542 LPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------------ITCEDLLPVFL 602 (759)
T ss_pred hHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------------HHHHHHhHHHH
Confidence 9988864332221 1224566666666667788888888888776654321 22344578889
Q ss_pred HHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009679 472 NLQSHDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 472 ~L~~~~~~~v~~~a~~il~~~~~~~~ 497 (529)
++..++.++|+-.+.+.+.++...-.
T Consensus 603 ~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 603 DLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HhccCCchhhhhhHHHHHHHHHhhcc
Confidence 99999999999999888888776543
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.38 E-value=0.00014 Score=70.50 Aligned_cols=313 Identities=16% Similarity=0.088 Sum_probs=193.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-hHHHHHHHHHHHhhhhcCCCCCchhh
Q 009679 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
+.+..++-+++.+++..+.+++..+..+... -..+.+.+.-.-++.-|..+. ...-+.+|+..+..+...... ....
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEI 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccC
Confidence 3344344445599999999999998877654 455566665555555564433 344477888888877766321 1223
Q ss_pred hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH
Q 009679 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318 (529)
Q Consensus 239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 318 (529)
-.+++..++.+..+.++..+..|+.+|+.++-.++ +.++..|++..|+..+.++...+....+.++-.+.. .+..+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccchh
Confidence 46788899999999999999999999999997765 557888999999999987665677778888888876 34444
Q ss_pred HHHHhcCChHHHHHHhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCChhHHHHHH
Q 009679 319 QCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAA 389 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~~l~~~~~~v~~~a~ 389 (529)
+.+...--++.++.-+.+. .+. +.-..+..++..+.+.=+.......+. ..+..|++.|..+.+++|+...
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 4444333455555544332 022 233455566666665322211111121 4688899999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH------HcCChHHHHhcc---CCCC---HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchH
Q 009679 390 WAISNATSGGSNEQIKFLV------SQGCIKPLCDLL---NCPD---PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLF 457 (529)
Q Consensus 390 ~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~lL---~~~~---~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~ 457 (529)
..+..+..-..+.....+. ..+-...-.++. .... +.....-...+.+... -.
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a---------------Ll 326 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA---------------LL 326 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------HH
Confidence 9999998755433222111 111110000000 0000 0000000011111110 12
Q ss_pred HHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhC
Q 009679 458 AQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW 493 (529)
Q Consensus 458 ~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~ 493 (529)
...|-++|.++.|..+..+. ++.+..+|.-+|..++
T Consensus 327 l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 327 LAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 44566799999999997666 8899999999988775
No 97
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=2.7e-05 Score=84.11 Aligned_cols=340 Identities=14% Similarity=0.142 Sum_probs=203.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSI-ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENT 150 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~-~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~ 150 (529)
...+...+.+.++..|..++.-|..+... .+.+++.. .-..+...+..+|.+.+ +-.|..|.+-|+-+=. ++...+
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhH
Confidence 34555566789999988776555544432 22232222 22335578889998887 6777777765554332 123333
Q ss_pred HHHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009679 151 RVVIDHGAVPIFVRLLSS---------PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l 208 (529)
+.+ +..|+.-|.. ++.++.+ ..-.=|+|+|.+-. +-+.+-.++++.
T Consensus 898 ~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LA 965 (1702)
T KOG0915|consen 898 KSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLA 965 (1702)
T ss_pred HHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHh
Confidence 333 3444443321 1111111 11223445543321 111244566666
Q ss_pred ccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH
Q 009679 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (529)
Q Consensus 209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 288 (529)
+.+.....+.-|+..+..++...-.........++|.|.+.=.+++..|+.........|...+...++.... .++.-|
T Consensus 966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eL 1044 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDEL 1044 (1702)
T ss_pred hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHH
Confidence 4444556666677777777766544445566778888888877889999888777777777765555554444 788888
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHH---HHHHHHHhc--C---CHHH
Q 009679 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA---CWTISNITA--G---NVNQ 360 (529)
Q Consensus 289 ~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~---~~~~ 360 (529)
+.-|.+..+.+|+.+|.+|..+..+.+.....-.-..++..+...+.+- ...+|+.| +.+|+-++. + ++..
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 8889999999999999999999998653221100113455556666665 56677654 556666554 1 1122
Q ss_pred HHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009679 361 IQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431 (529)
Q Consensus 361 ~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~ 431 (529)
-+..++ .++|.|++- +.+.-.++|+.++..+..++...+.....++. ..++.|++.+..-++.|..+.
T Consensus 1124 ~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1124 GKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred HHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHH
Confidence 223333 266666652 11456789999999999999876654444432 468888888887777665543
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.38 E-value=0.00032 Score=68.28 Aligned_cols=250 Identities=27% Similarity=0.324 Sum_probs=172.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.++.+++.+.+.+..++..++..+..+-.. -.++.+..++.+.+ +.+|..|+.+|+.+-. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence 678889999999999999999997665432 37889999999999 9999999998887765 2
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchh-----------HHHHHH
Q 009679 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN 219 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----------~~~~~~ 219 (529)
..++.|+.++. +++..+|..+.++|+.+-... .+.+++..+..... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 34788889888 589999999999999984321 36677777733221 123444
Q ss_pred HHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch
Q 009679 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (529)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v 299 (529)
+...+..+-. ...++.+..++.+.+..++..+..+|+.+.... ..+.+.+...+.+++..+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 4444443322 345667778888888888888888888877654 244567777888888888
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009679 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
+..++..++.+-.. ...+.+...+... +..++..+...+..+ ... .....+...+.+
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence 88888888877542 2345566677666 555555554444411 101 123445555666
Q ss_pred CChhHHHHHHHHHHHHhcC
Q 009679 380 AEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~ 398 (529)
....++..+..++..+...
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 6677777777777776654
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=2.1e-05 Score=77.86 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=148.8
Q ss_pred HHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC---c--hhHHH
Q 009679 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---N--DKIQA 278 (529)
Q Consensus 204 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~---~--~~~~~ 278 (529)
+..+. .+.|..++..|+.+|..|..+. ..-..+....++++.+.+..|+..|+..+.-..... . +..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 6778888888888888877743 122345567788899999999998866555444221 1 11111
Q ss_pred HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH--hc-
Q 009679 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA- 355 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~- 355 (529)
-....++..++..+.+.+..|+..|...||-+-.-+++.....++..++..+-..= .-.+......++- ++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr------~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR------TAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh------hcccchHHHHhcCCcccC
Confidence 12226788899999999999999999999999877776666555544333221111 0111111222222 11
Q ss_pred ----------CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH
Q 009679 356 ----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425 (529)
Q Consensus 356 ----------~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 425 (529)
...+.-..++.+|..-.++.-+++.-.+||+.|...++.++... |.+... .+..|++++.++..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence 11223345778888899999998888899999999999999853 344333 57889999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009679 426 RIVTVCLEGLENILKAG 442 (529)
Q Consensus 426 ~v~~~~l~aL~~l~~~~ 442 (529)
.|+..++.+|..|....
T Consensus 425 ~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887653
No 100
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.34 E-value=1.3e-05 Score=63.00 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=122.3
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHH
Q 009679 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 405 (529)
.+..|+.-.+...+.+.++....-|+|++.. |.+...+.+.+++..+++.+...+..++..++.+|||++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 3455555555555788888888889999886 7778889999999999999999999999999999999998 668889
Q ss_pred HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009679 406 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485 (529)
Q Consensus 406 ~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a 485 (529)
.+.+.+.++.++..+.++...++..++.++..+...+.. ....+-.--.++.+++...+.+.+.+..|
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998888888888777765433322 24445555667778887777777778888
Q ss_pred HHHHHhhCC
Q 009679 486 VKILETYWV 494 (529)
Q Consensus 486 ~~il~~~~~ 494 (529)
...++++..
T Consensus 162 ~~fl~~~~~ 170 (173)
T KOG4646|consen 162 SAFLDKHVH 170 (173)
T ss_pred HHHHHhhcc
Confidence 888877654
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.32 E-value=3.8e-05 Score=81.15 Aligned_cols=295 Identities=16% Similarity=0.122 Sum_probs=191.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC----C
Q 009679 158 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P 232 (529)
Q Consensus 158 ~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~ 232 (529)
+++.+...+++ ...+.+..|+..|..++..... ...-..++|.++.++ .+....++..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 35666666666 5677888899999888854321 111224788899998 7788899999998888765543 3
Q ss_pred CCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 233 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
........-++|.|..++.+ ....++..-+.+|..|+.... .+.+.+.-.....++..++.+ ....
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~-- 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPE-- 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------cccc--
Confidence 33344557788999888887 456678888888888875422 122222222222234444433 1111
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009679 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 389 (529)
...+...+.+.+ .+-..+..+|.++ ++-||...+..|+-||. | .+. -+.=+++.|+..|++.|+.+|..-.
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-k~k----sND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-KEK----SNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHhcCccHHHHHHHH
Confidence 111223333332 4556677888887 78888888888887775 2 110 1122689999999999999998777
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009679 390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 469 (529)
Q Consensus 390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 469 (529)
..|.-++..-.... ++..+++.|.+-|.+.++-|+..++++|..|++.+--.+ ..-...++.
T Consensus 639 dsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K--------------~~v~~i~~~ 700 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK--------------PAVKDILQD 700 (1431)
T ss_pred hhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch--------------HHHHHHHHh
Confidence 76665554322221 234578899999999999999999999999998764322 111223455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 470 IENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 470 l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
+.-|..|+|.=|+..+..+|.....
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHh
Confidence 6677899999999888877765543
No 102
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.27 E-value=1.9e-06 Score=54.52 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009679 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (529)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (529)
+++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 103
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.25 E-value=0.00014 Score=70.66 Aligned_cols=319 Identities=15% Similarity=0.109 Sum_probs=198.2
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchh
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKC 191 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~ 191 (529)
...+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|.. .+..=|++|+..+..+.......
T Consensus 25 ~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 25 FFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 34555655566666 8999999999999888 67777788887766666666655 34556889999998887542211
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009679 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
. .+..+++..++.+. .+.+...+..+..+|..++-.+ +......+++..|.+.+.++..++...++.++.++.+.
T Consensus 103 ~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 103 K--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred c--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 1 13556788888888 6677789999999999998874 55566688999999888876666888999999999988
Q ss_pred CchhHHHHHHhCcHHHHHHhcCCC-------Cc--chHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchh
Q 009679 272 TNDKIQAVIEAGVCPRLVELLRHP-------SP--SVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKS 341 (529)
Q Consensus 272 ~~~~~~~~~~~~~~~~L~~lL~~~-------~~--~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~ 341 (529)
+..+ +.+...--++.++.-..+. +. .....+..++..+...-+.......+ ..++..|+..|..+ .++
T Consensus 178 p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ 255 (371)
T PF14664_consen 178 PRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPE 255 (371)
T ss_pred cchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHH
Confidence 7543 2222212233343333222 12 23445556666665544433222222 25788899999998 888
Q ss_pred HHHHHHHHHHHHhcC-CHHHH------HHHHHcCCHHHHHHHH---hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 009679 342 IKKEACWTISNITAG-NVNQI------QAIIEAGIIGPLVNLL---LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 411 (529)
Q Consensus 342 v~~~a~~~L~nl~~~-~~~~~------~~l~~~~~l~~L~~~l---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 411 (529)
+|+.....+..+..- .+.-. ..+...+.+..-.++- ........... .-=.++..+--.-....|++.|
T Consensus 256 ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~g 334 (371)
T PF14664_consen 256 IRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAG 334 (371)
T ss_pred HHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcC
Confidence 999999999888872 12111 1111111110000100 00000000000 0001111110112344567899
Q ss_pred ChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009679 412 CIKPLCDLLNCP-DPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 412 ~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~ 442 (529)
+++.|+++.... ++.+...+.-.|..++...
T Consensus 335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 335 LLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999876 7788888888888887654
No 104
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.23 E-value=0.0014 Score=65.66 Aligned_cols=346 Identities=15% Similarity=0.126 Sum_probs=197.7
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 74 PAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 74 ~~l~~~L~s~~~---~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
|.++..|.+.+. ......+.+|..+.... +-.+.++ ..++..+-..++.+.+.+....++.+|..+.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSP--QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 566667765544 45566777777765321 2222222 24555555555443346677778888888766332222
Q ss_pred -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---------
Q 009679 151 -----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--------- 209 (529)
Q Consensus 151 -----~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~--------- 209 (529)
....+..+++.+...... . +..+.+.+...+..+...-+.-+..- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 223344477888776633 1 24566666666666664433222221 1233333331
Q ss_pred --cc----hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccC--CchhHHHHH
Q 009679 210 --EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI 280 (529)
Q Consensus 210 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~ 280 (529)
.. .......-...+++.+-. ..........+..++.+.. ..++..+..++.+++-++.. .++...
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 00 111122222233333322 2222233456777777655 44688899999999988865 222222
Q ss_pred HhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhc----CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 281 EAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 281 ~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
.++..+..-. .......+..++.++..++. ....... ..+..++.+|.+ +++...++.++.-+..
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 2333333333 33344445555555544432 2222221 345667888866 4678888888888877
Q ss_pred CCHH--------HHHHHHHc----CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009679 356 GNVN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 423 (529)
Q Consensus 356 ~~~~--------~~~~l~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 423 (529)
..++ .++.+.+. .++|.|++.....+...|.....||+++..+........ --..+++.|++.|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence 5332 23333332 267888888887777799999999999999765443222 1235799999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 009679 424 DPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 424 ~~~v~~~~l~aL~~l~~~~~ 443 (529)
|++++..++.+|..++...+
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAP 397 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCH
Confidence 99999999999999987653
No 105
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.21 E-value=3.1e-06 Score=53.53 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.2
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 357 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
++++++.+++.|++|.|+.+|.+++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47888999999999999999999999999999999999973
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.20 E-value=6.9e-05 Score=79.26 Aligned_cols=270 Identities=14% Similarity=0.138 Sum_probs=175.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---hh
Q 009679 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SE 148 (529)
Q Consensus 73 l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~---~~ 148 (529)
++.+..++++ ...+.+..|+..|..+..... .+..-..++|.++.++.++. .++|..|+..|+.+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4455555553 345677888888887764432 22222358999999999998 999999999998877522 22
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH---HHhc------------------------CC
Q 009679 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL---VLSN------------------------GA 200 (529)
Q Consensus 149 ~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~---~~~~------------------------~~ 200 (529)
.-..+...-++|.|-.++.+ ....+|..-+..|+.+|...-.+... +... ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22233344567888888877 44555655556666555211000000 0000 01
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009679 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 280 (529)
+...+.-|..+.++-+++..+..|.-||... .......-+++.|+.+|++.|..++..-...|..++-.-..+ -+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~ 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence 2222222224555677777777777777542 111122457789999999999999998888888776432211 23
Q ss_pred HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
+..++|.|.+-|.++.+.|...|++++.-++...--....+. .+++.+..+|.++ +.-+|..++..|..++.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 447889999999999999999999999999875433333333 4677788889999 88899999999988776
No 107
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=5.5e-05 Score=75.10 Aligned_cols=253 Identities=15% Similarity=0.141 Sum_probs=163.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHH---hhhhcCC---CCC
Q 009679 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL---SNFCRGK---PQP 234 (529)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L---~~l~~~~---~~~ 234 (529)
-|..+..+.+..++.+|+.+|..+... ...... .....+.++ .+.+..++..|..++ +|.+-.. ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 366677777778888888877777652 222122 234456666 667778888775544 4554221 122
Q ss_pred chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-
Q 009679 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG- 313 (529)
Q Consensus 235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~- 313 (529)
.......++..+...+.+-.-.|+..+..+|+.+...+.+.+...++..++..+-.--. ..-+-..+..=|-.+.|
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~---ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT---AHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh---cccchHHHHhcCCcccCc
Confidence 23344667778888888888899999999999988777766666666544442211110 00011111111211111
Q ss_pred ----------ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 314 ----------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 314 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
.++....++.+|....++.-|.++ -.+||++|+..++.++..+|.... ..+..|++++.+....
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 234455678889999999999988 889999999999999997666432 2567899999998889
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 436 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~ 436 (529)
||..|+.+|..++.+.. ++...++.++..|.+..++++......|.
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999987532 12234556666666666666655444433
No 108
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.19 E-value=0.00011 Score=66.72 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=155.1
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh-
Q 009679 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS- 197 (529)
Q Consensus 122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~- 197 (529)
+++.-+ +-.+.-|+.|+.++.. .++.|...... ..-..++..++. ...+++-+.+.+++-+.... .+.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 333334 5678899999999998 67887776543 344567777766 56789999999998887543 34433222
Q ss_pred cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCc--hhhhhc-hHHHHHHhhc---cCChHHHHHHHHHHHHhccC
Q 009679 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRP-ALPALERLIH---SNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 198 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~-~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~ 271 (529)
-..+..++.+........+.+-++..+.|++...|... .....+ +.+. ++.|. -.|++++.+.-..=+.+...
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~-vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC-VQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH-HHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 12456677777666788899999999999998543222 122233 4443 44443 23666654443332222211
Q ss_pred Cc------------------------------hhHHHHHHh--CcHHHHHHhcCCCCcc-hHHHHHHHHHHhhcCChhhH
Q 009679 272 TN------------------------------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQT 318 (529)
Q Consensus 272 ~~------------------------------~~~~~~~~~--~~~~~L~~lL~~~~~~-v~~~al~~L~~l~~~~~~~~ 318 (529)
.. .+...+.+. .++..|.++++..++. ...-||.-++.++...++..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 00 112223322 5788899999887776 56678999999999999999
Q ss_pred HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
..+.+.|+=..++.++.|+ +++|+-+|..++..+..
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 9899999999999999999 99999999998876653
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.19 E-value=0.00032 Score=68.31 Aligned_cols=249 Identities=24% Similarity=0.289 Sum_probs=170.9
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
..++.+++++.+.+ +.++..+++.++.+.. .-.++.+..++.+.+..+|..++.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence 36788999999987 8999999999776664 1357999999999999999999999988732 2
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCCh------------HHHHHH
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 261 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a 261 (529)
..++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 15788999995578899999999999987554 235566666665542 244444
Q ss_pred HHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009679 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (529)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 341 (529)
...++.+... ..++.+...+.+....++..|...|+.+.... ..+.+.+...+.++ +..
T Consensus 170 ~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 4444443221 34567777788877788888888888887754 23456677778777 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009679 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 421 (529)
+|..++.+++.+-.. . .++.++..+...+..++..+..++...- . ......+...+.
T Consensus 229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~---------~~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALGALD---L---------AEAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhcccC---c---------hhhHHHHHHHhh
Confidence 888888888877543 1 4456677777777777666665555110 0 012334444555
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 009679 422 CPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 422 ~~~~~v~~~~l~aL~~l~ 439 (529)
+.+..++.....++..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 556666655555555443
No 110
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.09 E-value=4.5e-05 Score=60.13 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=97.9
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
+.+..|+.-.+...+.+.+++...-|.|++- +|.+-..+.+..++..++..|..++..+.+.++..|+|+|.+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 3455566656555558889999999999998 78888899999999999999999999999999999999998865 578
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.+.+.+.++.++..+ .++...+..+++.++..|+.+.
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999998 7777778888889999998775
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.08 E-value=0.00042 Score=63.06 Aligned_cols=237 Identities=17% Similarity=0.159 Sum_probs=148.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009679 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
.|-++++.-++-.+.-|..++.++......+.....+...-.++++++++ +...++...+.+++.++.. +...+ .+
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aq-di 230 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQ-DI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHH-HH
Confidence 33445555566677788888888887665554444555566778888866 4567888899999888763 33332 22
Q ss_pred h--cCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHh
Q 009679 323 N--HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT 396 (529)
Q Consensus 323 ~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~ 396 (529)
+ ...+.-++.+.+.....+|-+-+|.++.|++.. ....+..+. ..++.+.+..++..+ |.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 134555666666554667888899999999983 234444444 344555544444443 5555433222222111
Q ss_pred cCC-----------------------------CHHHHHHHHHc--CChHHHHhccCCCCHH-HHHHHHHHHHHHHHhhhh
Q 009679 397 SGG-----------------------------SNEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEA 444 (529)
Q Consensus 397 ~~~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~~~~-v~~~~l~aL~~l~~~~~~ 444 (529)
... -...+..+... .++..|..+++..++. ....|+.-|..++...+.
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 100 01233344433 3467788888876665 445566667777666543
Q ss_pred hhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 445 ~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
....+...|+-+.|-+|.+|++++|+-.|...+..+.+.
T Consensus 391 ------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 ------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred ------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 367788899999999999999999999999888877653
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00014 Score=71.19 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=168.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
|.|-..|++....+++++++.+..+.... .....++ ..+..|-.+|+++. ...|+.|+++|..++...|+...
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-- 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-- 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee--
Confidence 44445566667888888888888865432 1112222 25667778888887 78899999999999985554321
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009679 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (529)
-++ +-+-.++.+.+..+...|+.+|..- ...+.-+.+ +..+..++ .+.+...+..+..++..||...|.
T Consensus 340 -vcN--~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 340 -VCN--KEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred -ecC--hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcH
Confidence 111 3445566666666665555555442 222222222 22222333 333445555666677777766555
Q ss_pred CchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009679 234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
..... +..|...|. ...-+....+..+|+.+....++..+ .++..|+.++.+.. ...-++++|+-+..
T Consensus 409 k~~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~ 477 (898)
T COG5240 409 KKLSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGR 477 (898)
T ss_pred HHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcc
Confidence 44433 334443333 45667788888888888877655444 34566777765532 23344555555544
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 009679 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (529)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL 392 (529)
..+.... -...+..+..-+--+ +.-+|..|+.+|+-++..-.+. .....+...|-+++.+.|.++|..|..+|
T Consensus 478 EgP~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 478 EGPRAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred cCCCCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3332111 012234444444444 6789999999998887642211 11222455677889999999999999999
Q ss_pred HHHhc
Q 009679 393 SNATS 397 (529)
Q Consensus 393 ~nl~~ 397 (529)
.++-.
T Consensus 551 ~~~~~ 555 (898)
T COG5240 551 RNMRL 555 (898)
T ss_pred Hhhhh
Confidence 99853
No 113
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.07 E-value=8.5e-06 Score=55.52 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009679 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
+.+|..|+|+|++++...++....... .+++.|+.+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999887887776554 4999999999999999999999999875
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.06 E-value=0.0012 Score=66.34 Aligned_cols=253 Identities=16% Similarity=0.129 Sum_probs=163.4
Q ss_pred hhhHHhhcCChHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-----CH
Q 009679 106 PINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----TD 171 (529)
Q Consensus 106 ~~~~~i~~g~i~~Li~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~ 171 (529)
....+.....+..|.++- ....++.+..+|++||+|+...++..+..+++.|..+.++..|+.. +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 344455555556665554 2222389999999999999999999999999999999999999875 68
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcc----------------chhHHHHHHHHHHHhhhhcCCCCC
Q 009679 172 DVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE----------------HAKLSMLRNATWTLSNFCRGKPQP 234 (529)
Q Consensus 172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~-~~i~~l~~~l~~----------------~~~~~~~~~a~~~L~~l~~~~~~~ 234 (529)
++.-...+.|.-++...+..+..+.+. +++..++..|.. ..+......++.++.|+....+..
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 888888888888887666677665554 566666665531 024556777888888888776433
Q ss_pred chhhh----hchHHHHHHhh---c--cCChHHHHHHHHHHHHhccCCchh-----------HHHHHHhCcHHHHHHhcCC
Q 009679 235 LFEQT----RPALPALERLI---H--SNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 235 ~~~~~----~~~l~~L~~ll---~--~~d~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~~~~L~~lL~~ 294 (529)
..... ..++..+..++ . .+.......++.+|.++--..... .........+..|+.+|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 32222 33444444442 1 123456777778887773111000 0001122456666666632
Q ss_pred -----C---CcchHHHHHHHHHHhhcCChhhHHHHH----------------hcCChHHHHHHhccCCchhHHHHHHHHH
Q 009679 295 -----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 295 -----~---~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
. -.....+.+.+|.+++......++.+- ...+-..|+.++.++ .+.+|..+...+
T Consensus 254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell 332 (446)
T PF10165_consen 254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL 332 (446)
T ss_pred HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence 1 135778889999999987655444332 124556788888887 588888888887
Q ss_pred HHHhcCCHH
Q 009679 351 SNITAGNVN 359 (529)
Q Consensus 351 ~nl~~~~~~ 359 (529)
-.+|..+..
T Consensus 333 f~Lc~~d~~ 341 (446)
T PF10165_consen 333 FVLCKEDAS 341 (446)
T ss_pred HHHHhhhHH
Confidence 777765433
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.011 Score=61.77 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=109.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
-++.+++.+.+.|.+++...-..+....... |...+. .++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 4677888888888888888777777776543 333332 5778888899998 9999999999987765 33322
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 230 (529)
.+++.+.+++.++++.||..|+.++.++..-++ +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 356899999999999999999999999986543 4566667777666666 888999999999999988665
No 116
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0028 Score=69.23 Aligned_cols=316 Identities=17% Similarity=0.167 Sum_probs=178.6
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--C 191 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~ 191 (529)
.+||.|.++=-+++ +.+|.....+...+..++....+... ..++.-|+.-+.+....+|+.++.+|..|....+. .
T Consensus 998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 47888888877887 88888877777777775444444443 35667777778888899999999999999976553 2
Q ss_pred HHHHHhcCChHHHHHHhccchhHHHHHH---HHHHHhhhhcCC-----CCCchhhhhchHHHHHH-hhccCChHHHHHHH
Q 009679 192 RDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQPLFEQTRPALPALER-LIHSNDDEVLTDAC 262 (529)
Q Consensus 192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~ 262 (529)
.+.+.+ ....+++.+ ++-...++.. ++.+++.+|-.. +.........++|.|+. .+-+.-++++..++
T Consensus 1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 222221 333344444 4444555554 445555555432 22233444566666652 22266789999999
Q ss_pred HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHH-HHHH----------HH-HhhcCChh--hHHHH-------
Q 009679 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-ALRT----------VG-NIVTGDDM--QTQCI------- 321 (529)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~-al~~----------L~-~l~~~~~~--~~~~~------- 321 (529)
.++..|+......+....- .+++.|+...+.-++.+... +++. +. +.+.+++- ....+
T Consensus 1153 ~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 9999999877654332222 56666666666554444322 2332 11 11111110 00000
Q ss_pred HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009679 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (529)
+=...+|.+.++++.+-.-..|..++..++-++.. ..+.. ... -.++..++..+.+.+..+++.-+.|.+.++....
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 01134555556555442333444555555544431 01100 000 1145556666677788999999999999999888
Q ss_pred HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 401 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 401 ~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+++.+.+++. .+..++...++. ...++..+.+|....
T Consensus 1310 ~dq~qKLie~----~l~~~l~k~es~-~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1310 PDQMQKLIET----LLADLLGKDESL-KSISCATISNIANYS 1346 (1702)
T ss_pred hHHHHHHHHH----HHHHHhccCCCc-cchhHHHHHHHHHhh
Confidence 8887776542 334444433321 144444555554443
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.01 E-value=4.4e-05 Score=69.82 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=117.5
Q ss_pred CCCCcchHHHHHHHHHHhhcCC--hhhHHHHHh--cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009679 293 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 368 (529)
.+.++..+..++..|..++.++ ......++. ..++..+...+.+. ...+.+.||.++..++..........++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~- 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI- 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH-
Confidence 5678899999999999998876 222222221 15667777788777 78899999999999997433334444443
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 447 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~ 447 (529)
++|.|+..+.++..-++..|..+|..++...+ ... + .+..+...+.+.++.++..++..+..++........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~---~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK---I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H---H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH---H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 78999999999888999999999999998764 111 1 155677788899999999999999999876541110
Q ss_pred cCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 448 MGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 448 ~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
. .. ....+ ....+.+..+..+.+++|++.|..++..|+..
T Consensus 168 ~-----l~-~~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 V-----LQ-KSAFL--KQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G-----G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred h-----hc-ccchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 00 01111 22356788889999999999998888877654
No 118
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00023 Score=71.65 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=107.1
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHH--hccCCchhHHHHHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhh
Q 009679 241 PALPALERLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
++=+.+-+++.+.|+-+|...+.++.- ...+. .+++..|+.. .++.+.+|++.|.-+||-++..++++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 344566677888888888877766542 22222 2567777777 57789999999999999999877643
Q ss_pred HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
++..+.+|..++++.||..++.+|+-.|+|+-... .+..|-.+..+...-||+.|+.+++-+..
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 46778888777799999999999999998633211 23333334455566799999999988876
Q ss_pred CCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009679 398 GGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 398 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
..++..+... .++.+.+.+.+.+.+.+
T Consensus 654 Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 654 QQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred hcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 5443332221 23445555555554443
No 119
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.00 E-value=4.7e-05 Score=58.18 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009679 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~ 421 (529)
.|+.+.++|+.++.+-+..+...++. +++.++..+.+++++||..||.+|.|++.....+...++. .++..|..++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 36788899998887655555555554 8999999999999999999999999999876656666554 48899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 009679 422 CPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 422 ~~~~~v~~~~l~aL~~l~~ 440 (529)
++|+.|+..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987665 66766654
No 120
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.0011 Score=67.97 Aligned_cols=236 Identities=18% Similarity=0.160 Sum_probs=161.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhccc------hhHHHHHHHHHHHhhhhc
Q 009679 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~~ 229 (529)
+...+.+|++.+.+-+-.++..+.+++...+.. +..+.+.=+..-+-++|... +....+.-++..|+.+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 556677888877777788888888888655432 23455555555556666421 345567778888888998
Q ss_pred CCCCCchhhhhchHHHHHHhhccCCh-HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009679 230 GKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~ 308 (529)
...........+-+|.++..+.+.+. ++...++.+|..++..+. ..+.+++.|.++.|++.+.+ .+.....|+.++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 65444455667899999999987776 999999999999996554 55779999999999999987 5567888999999
Q ss_pred HhhcCChhhHHH---HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHcCCHHHHHHHHhcC
Q 009679 309 NIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQA----IIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 309 ~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~----l~~~~~l~~L~~~l~~~ 380 (529)
+++......... -.-..+++.+...+... ....+-+++..|+.+....+.. ... -.-..+...+..++.+.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 988754421100 00113455566666655 5667888999999988754211 111 11223566677777776
Q ss_pred -ChhHHHHHHHHHHHHhc
Q 009679 381 -EFEIKKEAAWAISNATS 397 (529)
Q Consensus 381 -~~~v~~~a~~aL~nl~~ 397 (529)
.+.-|..++.....+..
T Consensus 244 ~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 56667777766666654
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.98 E-value=0.00012 Score=67.05 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=120.3
Q ss_pred ccCChHHHHHHHHHHHHhccCC--chhHHHHHHh--CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 009679 251 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (529)
Q Consensus 251 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 326 (529)
.+.+.+.+..++..|..++.+. ......+... .++..+...+.+....+...|+.++..++..........++ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4567888999999998887654 2222222221 56677778888888889999999999999865555554443 67
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC--HHHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQI 404 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~--~~~~ 404 (529)
+|.|+..+.++ ...++..|..+|..++...+... .+ .++.+...+.+.++.+|..++..+..++.... ....
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 88999999888 88899999999999998644111 11 25666777888899999999999999987644 1111
Q ss_pred H-HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009679 405 K-FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 405 ~-~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
. ...-..+++.+..++.+++++|+..+-.++..+....+
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 1 10113467889999999999999999999998876544
No 122
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0045 Score=65.50 Aligned_cols=260 Identities=14% Similarity=0.122 Sum_probs=161.3
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
+++..|+..+++.+ ..++-.|+..++.++...|.. ++ ..++...+.++.. ++...-..++.+|+.++..+--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 57778888888888 799999999999999866622 11 1334555565544 345666689999999986543222
Q ss_pred HHHHhcCChHHHHHHhcc-------chhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHH-HhhccCChHHHHHHHH
Q 009679 193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW 263 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~-~ll~~~d~~v~~~a~~ 263 (529)
..+. .+++.++.-|.. .....++..||.+++.+++.. +.........+.+.|+ ..+-+.+-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2222 245556655531 234578899999999998876 3222233344444333 3444666777888888
Q ss_pred HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH-hccCCchhH
Q 009679 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI 342 (529)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v 342 (529)
++-...-...+. . .+++ |+...+.-....+..+...+..-....+..+..+++ .++.. +.|= +..+
T Consensus 494 AlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 877554221110 0 1111 112222223344556666666666666666655543 22222 5555 8899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
|..++|+|.+++...|+. .....+|.+++.....+...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999999999987765553 344678889988888888888776666666654
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0039 Score=59.47 Aligned_cols=225 Identities=12% Similarity=0.158 Sum_probs=158.9
Q ss_pred hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---------hhhHHHHHhCCChHHHHHhhCCCCH------
Q 009679 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---------SENTRVVIDHGAVPIFVRLLSSPTD------ 171 (529)
Q Consensus 107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~g~i~~L~~lL~~~~~------ 171 (529)
...+++.++++.|+.+|.+.+ .++....+..|..++..+ ....+.+++.++++.|++.+..-++
T Consensus 118 Yp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea 196 (536)
T KOG2734|consen 118 YPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA 196 (536)
T ss_pred HHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence 446788999999999999998 899999999999998633 1345567788999999998876333
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHh
Q 009679 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL 249 (529)
Q Consensus 172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~l 249 (529)
.-...++..+-|+....+.+...+.+.|.+..|+..+... .-.....++...++-+..+.. ......--.++..+++-
T Consensus 197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence 3345667788888888888888888999999988866433 334456677788887777653 22222223455555554
Q ss_pred hc----c----C-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--hhH
Q 009679 250 IH----S----N-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQT 318 (529)
Q Consensus 250 l~----~----~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~ 318 (529)
+. + . ..+...+...+||.+......+ ..++...++....-+++. ....+..++++|-.+..+.+ ..+
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 43 1 1 3567888888888887776544 556666666666555655 44567789999999988776 556
Q ss_pred HHHHhcCChHHHHHHh
Q 009679 319 QCIINHQALPCLLDLL 334 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL 334 (529)
..+++..++..++.+.
T Consensus 355 ~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 6667777777666654
No 124
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0079 Score=63.20 Aligned_cols=321 Identities=14% Similarity=0.139 Sum_probs=189.0
Q ss_pred CChHHHHHhhc------CC-CChHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009679 114 GVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (529)
Q Consensus 114 g~i~~Li~lL~------~~-~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 184 (529)
|+++.+++.|. .+ +++.-+.-|++.++++++-- +..-...++.=+++.+...++++..-+|..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 56667777776 22 23667888889998888510 11111222333467777788899999999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC---chhhhhchHHHHHHhhccCChHHHHHH
Q 009679 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA 261 (529)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~d~~v~~~a 261 (529)
+... +.+...-..++....+.|..+.+..++..|+.+|..+..+.+.. ....+.+++..|+++.+.-+.+....+
T Consensus 490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 8433 22232333467777788856778899999999999998886332 233455666667777776665555555
Q ss_pred HHHH-HHhccCCchhHHHHHHhCcHHHHHHhcCC---CCc---chHHHHHHHHHHhh---cCChhhH--HHHHhcCChHH
Q 009679 262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PSP---SVLIPALRTVGNIV---TGDDMQT--QCIINHQALPC 329 (529)
Q Consensus 262 ~~~L-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~---~v~~~al~~L~~l~---~~~~~~~--~~~~~~~~l~~ 329 (529)
+..+ +..+..-......+.. .+.....+++.. .++ .-...|.++|..+. ..-+... -.-++..+++.
T Consensus 568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5544 3333322222222222 445556666653 122 22333444444333 2211111 11234466777
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH-
Q 009679 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV- 408 (529)
Q Consensus 330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~- 408 (529)
+-.+|++. -.++-.+++..+.+++...++.--.+. ++++.+.+.+.....+.-....-+|.|+...+.+.....-.
T Consensus 647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y 723 (1010)
T KOG1991|consen 647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDY 723 (1010)
T ss_pred HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchH
Confidence 77788777 778888888888888775333222222 26788888888887888889999999999887654322110
Q ss_pred HcCChHHHHhccCC---CCHHHHHHHHHHHHHHHHh
Q 009679 409 SQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 409 ~~~~l~~L~~lL~~---~~~~v~~~~l~aL~~l~~~ 441 (529)
..-+...+..++.+ .|.+. ..++..+.-++..
T Consensus 724 ~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~ 758 (1010)
T KOG1991|consen 724 LQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILN 758 (1010)
T ss_pred HHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHH
Confidence 01122233334443 23333 4456666666543
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=3.9e-05 Score=58.27 Aligned_cols=87 Identities=32% Similarity=0.518 Sum_probs=70.7
Q ss_pred HHHHHHhh-ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009679 243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (529)
Q Consensus 243 l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 321 (529)
+|.|++.+ .++++.++..++++|+.+.. . .+++.|+.++.++++.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---P--------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---H--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---H--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57888888 78899999999999995421 1 457899999999999999999999998842
Q ss_pred HhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 322 INHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
...++.|..++.++.+..+|..|+++|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2478889999988746677999998885
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.85 E-value=4.5e-05 Score=57.88 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.4
Q ss_pred hHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 116 i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
||.|++.| ++++ +.+|..++++|+.+.. + .+++.|+.++.++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6666 9999999999995532 2 34799999999999999999999999983
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 225 (529)
....++.|..++.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378889999966667777888888774
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0079 Score=59.36 Aligned_cols=308 Identities=14% Similarity=0.146 Sum_probs=177.1
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhH
Q 009679 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214 (529)
Q Consensus 135 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 214 (529)
..++...+...+++....+ .|.|-..+++.-+-+.-.++++++.++..+-. ..+.. ..+..|-.+| .....
T Consensus 247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv 317 (898)
T COG5240 247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRV 317 (898)
T ss_pred hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchH
Confidence 3344445555455554444 36677777776677888888888888754411 11111 1344455555 66777
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009679 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 294 (529)
..+-.|..+|..|+...|..... +-+-+-.++.+.+..+...|+.+|..- +.++.+..++. .++.++.-+++
T Consensus 318 ~~rFsA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD 389 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSD 389 (898)
T ss_pred HHHHHHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhcc
Confidence 88889999999998876544332 234455666677777777777776543 33344443432 34445555555
Q ss_pred CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 009679 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (529)
Q Consensus 295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 374 (529)
+-..+...|++.|+...- .... ..+..|...|.....-+.++.++.+|+.+....|+.... .+..|+
T Consensus 390 ~FKiI~ida~rsLsl~Fp---~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC 456 (898)
T COG5240 390 GFKIIAIDALRSLSLLFP---SKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLC 456 (898)
T ss_pred CceEEeHHHHHHHHhhCc---HHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHH
Confidence 555566666666666543 2211 245666666655436778888888888888766665443 345677
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCcc
Q 009679 375 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 454 (529)
Q Consensus 375 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~ 454 (529)
..+.+-+ .-+-+...|+-+-..+....-+ ...+.++..-+--++.-++..++.||..+.-.....
T Consensus 457 ~fIEDce--y~~I~vrIL~iLG~EgP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--------- 521 (898)
T COG5240 457 TFIEDCE--YHQITVRILGILGREGPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--------- 521 (898)
T ss_pred HHHhhcc--hhHHHHHHHHHhcccCCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------
Confidence 7776532 2234445555444332100000 011223333333456678888888887663221110
Q ss_pred chHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009679 455 NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 455 ~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
+........+.+..++.+.+|+++|.-.++.+-
T Consensus 522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 111223445778888999999999988887664
No 128
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.027 Score=59.41 Aligned_cols=358 Identities=14% Similarity=0.127 Sum_probs=197.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc-CCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
+.++-.++|+---+|..|++.+..+.+.+-..+ ..-..++....+.|. +.+ -.++.+|+-+|..+.+..+.....
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhhh
Confidence 333444567777889999999999875431111 111234455566666 444 789999999999998855544333
Q ss_pred HHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----c-hhHHHHHHHHHHH
Q 009679 153 VID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----H-AKLSMLRNATWTL 224 (529)
Q Consensus 153 ~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~----~-~~~~~~~~a~~~L 224 (529)
+.. .+++..|+.+.+. +++.+...-=..++..+..-..+...+. .+....+.+++.. + .+.+-...|.++|
T Consensus 541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 332 2455566666665 3333333333344444433222222222 2345566666642 1 1222233344444
Q ss_pred hhhhc---C--C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009679 225 SNFCR---G--K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298 (529)
Q Consensus 225 ~~l~~---~--~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 298 (529)
..+.. . . |.........++|.+-.+|.+.-.++-..++..+.+++....+....+. |+++.+.+.+....-.
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHH
Confidence 43322 1 1 2222223355667777777777788888888888887755433322232 6788888888887777
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhc-----CChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINH-----QALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 372 (529)
......-+|.|+++.... .+.+. -++..+..+|.+.. ...-...||..+.-+.-......+..+.. ++..
T Consensus 698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~ 773 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLEL 773 (1010)
T ss_pred HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHH
Confidence 778888888888763321 12221 23445556665531 22234456666665554212222222211 2222
Q ss_pred HHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-----CCHHHHHHHHHHHHHHHHhh
Q 009679 373 LVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 373 L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-----~~~~v~~~~l~aL~~l~~~~ 442 (529)
.+.-+.. .+...+..++.++.|............|-+.|....+..+.-. ....=++.|+-+|..++..+
T Consensus 774 a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~ 850 (1010)
T KOG1991|consen 774 ALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLG 850 (1010)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 3333333 3567888899999888888777788888877775554333211 11112344555666676665
No 129
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.75 E-value=0.011 Score=59.22 Aligned_cols=297 Identities=15% Similarity=0.104 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCh----hhHHhhcCChHHHHHhhcCCC------ChHHHHHHHHHHHHHhcCCh-hhHHH
Q 009679 84 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIASGTS-ENTRV 152 (529)
Q Consensus 84 ~~~~~~~a~~~l~~lls~~~~~~----~~~~i~~g~i~~Li~lL~~~~------~~~v~~~a~~~L~~l~~~~~-~~~~~ 152 (529)
+...-...+..+..++....... .....+..++|.+.++..... ++.+...+..++..+...-+ +..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777777766532222 233345568888888764321 14555666666666665333 33333
Q ss_pred HHhCCChHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHH
Q 009679 153 VIDHGAVPIFVRLLS----------S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 216 (529)
++ ..+..++. . ...........+++.+-.+..- .. ....+..++.+.....++..
T Consensus 136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~--~~~ll~~l~~~~~~~~~~~~ 206 (415)
T PF12460_consen 136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL--PD--LEELLQSLLNLALSSEDEFS 206 (415)
T ss_pred HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc--cC--HHHHHHHHHHHHHcCCChHH
Confidence 32 22333222 0 1111222222333333222110 01 11256667777655666777
Q ss_pred HHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHH----HHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh
Q 009679 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVL----TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (529)
Q Consensus 217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~----~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 291 (529)
+..++.+++.+....+... ....++..+...+ ...++..+ ....|...-+.-....... .++..|+.+
T Consensus 207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l 279 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL 279 (415)
T ss_pred HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence 8888888887776532222 3345555555444 23333333 4444444444422222222 456778888
Q ss_pred cCCCCcchHHHHHHHHHHhhcCChhh--------HHHHHhc----CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009679 292 LRHPSPSVLIPALRTVGNIVTGDDMQ--------TQCIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (529)
Q Consensus 292 L~~~~~~v~~~al~~L~~l~~~~~~~--------~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (529)
+.+ +.+...+.+.++-+....+.. .+.+... .++|.++...+.. +...|..-..+|+++..+-|.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence 887 567888888888888763321 2222222 3466666666666 556888888999999997665
Q ss_pred HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 360 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 4422212348999999999999999999999999999865
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.013 Score=56.03 Aligned_cols=223 Identities=16% Similarity=0.087 Sum_probs=157.6
Q ss_pred hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC---------chhHHHHHHhCcHHHHHHhcCCCCcc------hHHH
Q 009679 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVCPRLVELLRHPSPS------VLIP 302 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~~~~~~L~~lL~~~~~~------v~~~ 302 (529)
....+++.++.+|.+++.+|....+..+..+++.+ ...+..+++.++++.|++.+..-+.. -...
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 34678999999999999999999999999998632 13456778889999999887543332 3556
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--
Q 009679 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-- 379 (529)
Q Consensus 303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-- 379 (529)
++..+-|++.-.+..+..+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-+-+++..+++-+.-
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 78889999998888888888889999988865432 134567788888888887766666666677788888776542
Q ss_pred -CC------hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009679 380 -AE------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 452 (529)
Q Consensus 380 -~~------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~ 452 (529)
.+ .+.-.+...+||.+.. .+.....++...++....-+++. ....+..++.+|..++.-.+
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~--------- 349 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE--------- 349 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC---------
Confidence 22 3456777888888877 44666777766666555544443 44455667777776654332
Q ss_pred ccchHHHHHHhhchHHHHHHH
Q 009679 453 GVNLFAQAIDDAEGLEKIENL 473 (529)
Q Consensus 453 ~~~~~~~~i~~~g~~~~l~~L 473 (529)
.-+++..|.+.+|+..+-.+
T Consensus 350 -gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 350 -GTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -chHHHHHHHHHHhHHHHHHH
Confidence 12357777777777777655
No 131
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0025 Score=64.70 Aligned_cols=325 Identities=13% Similarity=0.108 Sum_probs=166.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009679 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (529)
Q Consensus 76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 155 (529)
+-+.|+.+|+-+|-..++.|+++= . .+++ ..++|.+...|.+.+ +-+|..|..++..|-.... .++.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLk----E---~ELl-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L~p 170 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLK----E---PELL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HLIP 170 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcC----c---HHHh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hhcC
Confidence 334567778888888888887752 1 1222 358899999999988 8999999999988876311 1111
Q ss_pred CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCC----------------CchhHHHH-------------HhcCChHHHH
Q 009679 156 HGAVPIFVRLLS-SPTDDVREQAVWALGNVAGD----------------SPKCRDLV-------------LSNGALMPLL 205 (529)
Q Consensus 156 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~----------------~~~~~~~~-------------~~~~~i~~l~ 205 (529)
.+-..+-.+|. ..++..+.+|...|...-.+ ++..+-.+ .+...+..+.
T Consensus 171 -DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~ 249 (948)
T KOG1058|consen 171 -DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIY 249 (948)
T ss_pred -ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHH
Confidence 11122222222 24455555554433332110 00000000 0001222333
Q ss_pred HHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009679 206 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (529)
Q Consensus 206 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 284 (529)
.+| .++++.+...++.+|..++... ..+......++.++. ..|..+..-.+.-|..+..... .+.+ |.
T Consensus 250 ~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il~-~l 318 (948)
T KOG1058|consen 250 NLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KILQ-GL 318 (948)
T ss_pred HHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHHH-HH
Confidence 333 2223333333333333333221 111122222222222 1122222222222222221111 1111 55
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh-c-----cCCchhHHHHHHHHHHHHhcCCH
Q 009679 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-T-----QNYKKSIKKEACWTISNITAGNV 358 (529)
Q Consensus 285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~-----~~~~~~v~~~a~~~L~nl~~~~~ 358 (529)
+--++..|++++-+++..++.+.-.+++.... . .++..|.+-+ + +....+.|..-..++..++...|
T Consensus 319 ~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--e-----div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 319 IMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--E-----DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHHHHcCcccccHHHHHHHHHHhhhhhccH--H-----HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 66677788899999999999888777764331 1 1122222222 1 12245678888899998888767
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHH
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN 437 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~ 437 (529)
+.. +.+++.|++.+.+.++..-...+..+......- |.. +..++..|++-+. -...++...++|+++.
T Consensus 392 ~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 392 EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhHHHHHHH
Confidence 743 447889999998887665555555555444422 111 2234555555443 3566788889999997
Q ss_pred HHHhhh
Q 009679 438 ILKAGE 443 (529)
Q Consensus 438 l~~~~~ 443 (529)
.+....
T Consensus 461 Yce~~~ 466 (948)
T KOG1058|consen 461 YCEGLS 466 (948)
T ss_pred HHhhhH
Confidence 776544
No 132
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.062 Score=56.33 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=125.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009679 80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (529)
Q Consensus 80 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (529)
+.+++...+..|++.+......+.+ . ..+.|-+++...+.+ .+++.-.-.-|..++...|+..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 6677777788887665544443312 1 125677788888666 899999888899999877744332 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh
Q 009679 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (529)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (529)
+.+.+=+.++++.+|..|+++++.+= .++. -..+++++.+++ .+.++.+++.|+.++..+-+-+ +.....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 78888899999999999999999872 1222 123577888888 8889999999999999998654 222333
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009679 240 RPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
.|.+..+..++.+.||.|..+|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 45777788888899999999999999988654
No 133
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.68 E-value=0.038 Score=57.74 Aligned_cols=248 Identities=15% Similarity=0.169 Sum_probs=160.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHH
Q 009679 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (529)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L 246 (529)
.+..+.+.-.+.|+++..+.........+. .++...+..+..+..+.++..++.+++..|. +.........++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 345677666899999977654322222211 2445556666566667778888888887773 334444556778888
Q ss_pred HHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc--CCCCcchHHHHHHHHHHhhcCChhhHHHHHhc
Q 009679 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (529)
Q Consensus 247 ~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 324 (529)
.++......++......+|+..+..+++. ..-.++.+.|.++.+. .+++|.+...+-.++-.++.... . .--+..
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~-~g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-N-YGPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-h-hcchHH
Confidence 88888888999999999999999887755 3455667778777765 33566666666666665554111 1 111233
Q ss_pred CChHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHHHHHhcCC
Q 009679 325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 325 ~~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
..+|.+++.|..+ . ......++-.|..+.++.+.-....+-.-++|.+.++. .++|..+-..+..||..+....
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 6789999999876 4 55666777788878875443333333344788888875 4458889999999999998875
Q ss_pred CHHHHHHHHHcC-----ChHHHHhccCC
Q 009679 400 SNEQIKFLVSQG-----CIKPLCDLLNC 422 (529)
Q Consensus 400 ~~~~~~~l~~~~-----~l~~L~~lL~~ 422 (529)
.++...+=.+.| ++..+.+||+-
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 433333322222 24555566653
No 134
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.66 E-value=0.011 Score=56.36 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=147.8
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh-----HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
+.+...+++..|+..|..-+-+.+..+..+.+++....... ...+.. ..-+.+..++....++++-..+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 44666799999999999988889999999999998764322 223332 223334444433335567677777777
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHhccCCCCHHHHH
Q 009679 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVT 429 (529)
Q Consensus 352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~v~~ 429 (529)
.++.. +.....++....+..+.+.+..++.++...|...+..+......-...+|..+ .+...+..+|.+++.-++.
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 77776 66677888888999999999999999999999999998876443334444332 3467888899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 430 ~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
.++..|+.++...... +.+...+.+..-+..+-.|..+++..|+-.|.++..-|..
T Consensus 228 qslkLL~ellldr~n~---------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNF---------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHSGGGH---------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHchhHH---------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 9999999999765433 2345666666778888888999999999999888875543
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0024 Score=61.51 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=88.7
Q ss_pred CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc----C--CHH-HHHHHHH
Q 009679 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA----G--NVN-QIQAIIE 366 (529)
Q Consensus 294 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~--~~~-~~~~l~~ 366 (529)
+++.-++..|++.++.++-+.........-......+...|.+. .-..|..++|+++||+. + +++ ....+..
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 34445777888998888876554444444456677777777776 67789999999999986 2 222 2222222
Q ss_pred cCCHHHHHHHHh---cCChhHHHHHHHHHHHHhcCCCHH--HHHHHHHcCChHHHHhcc-CCCCHHHHHHHHHHHHHHHH
Q 009679 367 AGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGGSNE--QIKFLVSQGCIKPLCDLL-NCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 367 ~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~~--~~~~l~~~~~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~ 440 (529)
. .+..++.... ....+|+..|..+|+|+...-.+- ........+.+..+.... -...-+|+=+++.+++|+++
T Consensus 481 ~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 481 L-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred H-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 1 3444444322 236789999999999997532110 001111222232332222 23445788889999999987
Q ss_pred hh
Q 009679 441 AG 442 (529)
Q Consensus 441 ~~ 442 (529)
..
T Consensus 560 n~ 561 (728)
T KOG4535|consen 560 NP 561 (728)
T ss_pred Cc
Confidence 54
No 136
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0072 Score=53.95 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=154.6
Q ss_pred HHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009679 117 PRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (529)
Q Consensus 117 ~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (529)
..+.+.|...+. ..-++.|+..|.++.. +. .+..+.+...+++..++...+.+|+.....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------- 66 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLG--PA---------AIKAITKAFIDDSALLKHELAYVLGQMQDE-------- 66 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCC--hH---------HHHHHHHhcccchhhhccchhhhhhhhccc--------
Confidence 344455544321 2345666666666665 21 145555555555556666677777766432
Q ss_pred HhcCChHHHHHHhcc-chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009679 196 LSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 196 ~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
..++.++..+.. +..+-++..+..+|..+.. ...++.+-+..+++-..|+..+..++..+-.....
T Consensus 67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ---hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 256777777743 3356667778888887652 24566666776666677777777777666432110
Q ss_pred hH----HHH--H------HhCcHHHHHHhcCC-CCcc-hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch
Q 009679 275 KI----QAV--I------EAGVCPRLVELLRH-PSPS-VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 340 (529)
Q Consensus 275 ~~----~~~--~------~~~~~~~L~~lL~~-~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 340 (529)
.. ... + ..+-+..+-..|.+ ..+. -+..|.+.|.|+.. ++ .+..|..-+..+ +.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~-Sa 201 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADD-SA 201 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccc-hH
Confidence 00 000 0 00112223222222 2222 23456666666533 32 244566667777 88
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
-.|.+++++++.+-+. . .+|.|...|.+. ++-||.+|+.||+.++.. + +++.|..
T Consensus 202 lfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e 258 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKE 258 (289)
T ss_pred HHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHH
Confidence 8999999999988653 2 567777777664 788999999999999752 2 5677888
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 009679 419 LLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 419 lL~~~~~~v~~~~l~aL~~l 438 (529)
+++++++-|+..|.-+|..+
T Consensus 259 ~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDML 278 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 88888888888888777754
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0041 Score=63.55 Aligned_cols=284 Identities=13% Similarity=0.131 Sum_probs=152.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
++.+=.++.+....+..+|++++..+-... ...+.. .+..|--+++++. +.+|+.|.++|..++...|.....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~----~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTN----SRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccC----Hhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence 444455666677777777777776653221 222221 4555666666666 677777777777777644432211
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
++ .-|-.++.+.+..+...|+.+|..--.+ ...+.+. ..+.... .+-+.+.+..+..++..||...|
T Consensus 320 ---cN--~elE~lItd~NrsIat~AITtLLKTG~e--~sv~rLm-----~qI~~fv-~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 320 ---CN--LDLESLITDSNRSIATLAITTLLKTGTE--SSVDRLM-----KQISSFV-SDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ---cc--hhHHhhhcccccchhHHHHHHHHHhcch--hHHHHHH-----HHHHHHH-HhccccceEEeHHHHHHHHhhcc
Confidence 11 2333444444444444444444332111 1112211 1111111 22233334444444445554433
Q ss_pred CCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 233 QPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
... ...++.|..+|..+ .-+-..+...++..+....++... .++..|+.++.+.. ...-+.++|+-+.
T Consensus 387 ~k~----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG 455 (865)
T KOG1078|consen 387 RKH----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLG 455 (865)
T ss_pred HHH----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHh
Confidence 222 34556666666643 455666677777766654333322 34455666654432 3445555665555
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009679 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a 391 (529)
...+.. ......+..+...+.-. +..+|.+|..++.++..+++.. ...+...|.+++.+.|.++|..|..+
T Consensus 456 ~EgP~a---~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 456 KEGPKA---PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred ccCCCC---CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 433211 11224455555555555 7789999999999998654332 22355667788888899999999999
Q ss_pred HHHHh
Q 009679 392 ISNAT 396 (529)
Q Consensus 392 L~nl~ 396 (529)
|.++.
T Consensus 527 l~~l~ 531 (865)
T KOG1078|consen 527 LKNLE 531 (865)
T ss_pred HHHhh
Confidence 98887
No 138
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.035 Score=59.77 Aligned_cols=235 Identities=13% Similarity=0.064 Sum_probs=143.6
Q ss_pred HHHHHhccchhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009679 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (529)
Q Consensus 203 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 280 (529)
.+.....++.+..++..+...|..++...+ ......+..+...|..-+++.+...+...+.+|..|.+..+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444455678899999999999998832 222334456666777777788888999999999988866552223333
Q ss_pred HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc-------CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009679 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
..-+.+.++. +.+.+...+..|..+|-.++. +++. ....++ ..++.|...+-.. ...+......++..+
T Consensus 737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 3333344444 477777778777777777662 1111 011111 2344444443333 222222223444444
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009679 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433 (529)
Q Consensus 354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~ 433 (529)
..........-.-.+++..+.-+|.+..+++++.|+..+.-++..-+........ ..+++.+..++++....++..+-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4321111111111235566677788889999999999999999876544444332 236888888888888888888888
Q ss_pred HHHHHHHhh
Q 009679 434 GLENILKAG 442 (529)
Q Consensus 434 aL~~l~~~~ 442 (529)
.|..++...
T Consensus 892 LlekLirkf 900 (1176)
T KOG1248|consen 892 LLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHh
Confidence 888887654
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.60 E-value=9.5e-05 Score=50.27 Aligned_cols=55 Identities=36% Similarity=0.579 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009679 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l 268 (529)
+.++..++|+|.+++...+.........++|.|..+|.++++.|+..++|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999888765556667789999999999999999999999999875
No 140
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.14 Score=54.87 Aligned_cols=340 Identities=15% Similarity=0.153 Sum_probs=182.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..++..+++.|..++-.|++.+.++.+.....-++. ++...++++...+.+..=..|+-+|+.++...--...
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 46777888889999999999999999987542111222 4455566555444244556788888888873311111
Q ss_pred HHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009679 152 VVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 221 (529)
.+. .++|.++..|.- ....||+.|+.+++.++...... .. +. ......|+.....+.+..+++.|.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHHH
Confidence 111 245666665532 34679999999999988543321 11 11 111222222222566788899999
Q ss_pred HHHhhhhcCCCCCchhhhhchHHHHHHhhccCC---hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh-cCCCCc
Q 009679 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSP 297 (529)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~ 297 (529)
.++-......+... .++ .++.+.| -..+.++...++.-....+.....+++ .++.- +.|=++
T Consensus 493 AAlqE~VGR~~n~p-----~Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 493 AALQENVGRQGNFP-----HGI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHhccCCCCC-----Cch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccH
Confidence 88887665431111 111 1122222 122333333333222222222222222 22222 444567
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH---HHHHHH---cC---
Q 009679 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ---IQAIIE---AG--- 368 (529)
Q Consensus 298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~---~~--- 368 (529)
.++..+.++|.+++...++ ......++.++....+. +...|..+..+.+.++.+.... ...+.+ ++
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence 8899999999998775543 33456778888877777 7778877777766666531110 111111 11
Q ss_pred CHHHHHHH-HhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 369 IIGPLVNL-LLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 369 ~l~~L~~~-l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
+++.++.. +..+ ..-++...+..+-.+..... .....++-.+.-..+.+.+...+ .++..+.+++..++..
T Consensus 634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hccHHHHHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 23333332 2222 23455566666666665433 22223333334445555553344 6777777777777543
No 141
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.00044 Score=66.34 Aligned_cols=300 Identities=15% Similarity=0.133 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CCchhHHHHHhcCChH--
Q 009679 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-----DSPKCRDLVLSNGALM-- 202 (529)
Q Consensus 130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~~~~~~~i~-- 202 (529)
.++.++..+|..++..-.-.+..+++ +...+...+....+.++..+..++..+-. +.|+-.+.-...+.+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 46778888888777633222222222 22344445556788899988888877642 2222111111111111
Q ss_pred ----HHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHH
Q 009679 203 ----PLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (529)
Q Consensus 203 ----~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~ 277 (529)
+.-....++..+..+...|.+++++.... ...........+-.+...-.+.+.-++..+++++.-+.-++.-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11122223345567778888888876543 1111100011111222222234455788888888877766655545
Q ss_pred HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC----Ch---hhHHHHHhcCChHHHHHHh--ccCCchhHHHHHHH
Q 009679 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD---MQTQCIINHQALPCLLDLL--TQNYKKSIKKEACW 348 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~---~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~ 348 (529)
...-......+...+.+..-..+..+.+++|||+.. .+ .....+.. -.+..++..- .+..+.+|+..+..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 444446667777777777778899999999999752 11 12222221 1122222221 12225679999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 349 TISNITAGNVNQIQAIIEA-------GIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 349 ~L~nl~~~~~~~~~~l~~~-------~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
+|+|+..- .+.+.+. +-+..++.. .-.+..+||=+||++++|+..+..-.....=....+.+.|+.++
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 99998642 2222221 112222222 22246789999999999999864211100001122456666666
Q ss_pred C-CCCHHHHHHHHHHHH
Q 009679 421 N-CPDPRIVTVCLEGLE 436 (529)
Q Consensus 421 ~-~~~~~v~~~~l~aL~ 436 (529)
. ..+-+|+..+..+|.
T Consensus 583 ~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHhccceEeehhhhhhc
Confidence 4 355566666655554
No 142
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.0003 Score=44.33 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.7
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (529)
++.+..+++.|+++.|+.++.+++.+++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.49 E-value=0.019 Score=59.90 Aligned_cols=237 Identities=16% Similarity=0.107 Sum_probs=154.3
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009679 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (529)
Q Consensus 122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 200 (529)
.+.....|.+-..+.|.+...+.........+- -.+...+..+. +..+-++..|+.+++..++... +.. ...++
T Consensus 457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~i 531 (1005)
T KOG2274|consen 457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMI 531 (1005)
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHH
Confidence 333333477777888888877763222211110 11233333333 3456677778888887773321 111 12235
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHH
Q 009679 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQA 278 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~ 278 (529)
+..|+++. ...+.++......+|+..|..+|.........+.|.+..++. ++||.|...+-.++-.+++... +...
T Consensus 532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~ 609 (1005)
T KOG2274|consen 532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGP 609 (1005)
T ss_pred HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcc
Confidence 56666666 556778888999999999998877777777788887776654 6688887777777777765322 2222
Q ss_pred HHHhCcHHHHHHhcCCCC----cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009679 279 VIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 354 (529)
+.+ ..+|.++..|..+. ......++.+|..+..+.+.-....+-..++|.+.++.-|..+...-..+..+|..+.
T Consensus 610 m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 610 MQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred hHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 222 67899999998765 5566778888888887766444444445678888887766658888889999999888
Q ss_pred cCCHHHHHHHHH
Q 009679 355 AGNVNQIQAIIE 366 (529)
Q Consensus 355 ~~~~~~~~~l~~ 366 (529)
..+.++...--.
T Consensus 689 s~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 689 SVTLEQLLTWHD 700 (1005)
T ss_pred hcCHHHHHhhcc
Confidence 876776554443
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.018 Score=51.45 Aligned_cols=243 Identities=18% Similarity=0.227 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009679 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (529)
Q Consensus 84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (529)
...-++.|+..|+.+.... .+..+.+...+++ ..++.+.+++|+.... ...++.|+
T Consensus 18 ~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~ 73 (289)
T KOG0567|consen 18 PLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLV 73 (289)
T ss_pred HHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHH
Confidence 3455667777777765322 1444445544444 4555666666666654 23466666
Q ss_pred HhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC-----------
Q 009679 164 RLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG----------- 230 (529)
Q Consensus 164 ~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~----------- 230 (529)
..+.. ..+-+|..|..+|+++. +. . .++.+-+.. +++-..+...+..++..+-..
T Consensus 74 ~vl~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p 141 (289)
T KOG0567|consen 74 EVLLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSP 141 (289)
T ss_pred HHhcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCc
Confidence 66654 44666777777777765 21 1 122222332 333333444333333332211
Q ss_pred ----CCCCchhhhhchHHHHHHhh-ccCChHH-HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHH
Q 009679 231 ----KPQPLFEQTRPALPALERLI-HSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304 (529)
Q Consensus 231 ----~~~~~~~~~~~~l~~L~~ll-~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al 304 (529)
+|.+. ....-+..+-..| ..+.+.. +..++..|.|+.. + ..+..+..-+..++.-++..+.
T Consensus 142 ~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~SalfrhEvA 208 (289)
T KOG0567|consen 142 YISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADDSALFRHEVA 208 (289)
T ss_pred cccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccchHHHHHHHH
Confidence 11111 1122233333333 3233332 4445555555422 1 2244555666777788899999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
.++|.+-+. -.++.|.+.|.. .+.+.+|.+|+.+|+.++.. + .++.|...+.+.++-
T Consensus 209 fVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~v 266 (289)
T KOG0567|consen 209 FVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEERV 266 (289)
T ss_pred HHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHHH
Confidence 999998652 245666666633 33789999999999999753 3 466777778877777
Q ss_pred HHHHHHHHHHHHhc
Q 009679 384 IKKEAAWAISNATS 397 (529)
Q Consensus 384 v~~~a~~aL~nl~~ 397 (529)
|++.+..+|.-+-.
T Consensus 267 v~esc~valdm~ey 280 (289)
T KOG0567|consen 267 VRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777765543
No 145
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.45 E-value=0.0029 Score=48.35 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 463 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 463 (529)
.|+.++.+|..++.........++ ..++++++..+.++|+.|+-.++++|.++.+..... +...|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~~ 68 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFNE 68 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 366778888888766554544443 348999999999999999999999999999876432 2334433
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009679 464 AEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 464 ~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
.++.|-.+..++++.|+..| .+|++.
T Consensus 69 --IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 69 --IFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred --HHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 47888999999999999877 455544
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.011 Score=60.71 Aligned_cols=286 Identities=17% Similarity=0.159 Sum_probs=164.3
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
..+.+-.++.+.. ..+..+|++++.++...++.... ..+..|-.+++++...+|-.|+++|..+|.-.|..
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~--- 316 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA--- 316 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence 3445555566666 78889999998888874433222 26778888888888999999999999998655531
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
+.. +-..|-.++ .+.+..+ +..++..|...........+..-++..+.=+.++..-+..+++.+|+.....
T Consensus 317 v~~--cN~elE~lI-td~NrsI---at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~--- 387 (865)
T KOG1078|consen 317 VTV--CNLDLESLI-TDSNRSI---ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR--- 387 (865)
T ss_pred ccc--cchhHHhhh-cccccch---hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH---
Confidence 111 111122222 2222222 2233333333221111111112222222222333334455555555544321
Q ss_pred hHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009679 275 KIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (529)
Q Consensus 275 ~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 353 (529)
. ..+.+..|..+|.. +..+.......++..++..++.... .++..|...+.+. +...-+...|.-+
T Consensus 388 k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlL 454 (865)
T KOG1078|consen 388 K-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLL 454 (865)
T ss_pred H-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHH
Confidence 1 12445566666654 4556788888888888886665543 4566677777655 4555666666666
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009679 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433 (529)
Q Consensus 354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~ 433 (529)
....|... .....+..+.+...=.+..+|..|..+|.++..... . ....+.-.|.+++.+.|.+++..+.-
T Consensus 455 G~EgP~a~---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 455 GKEGPKAP---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred hccCCCCC---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCchHHHHHHHHH
Confidence 65212110 011233334443334567899999999999984421 1 12345667888999999999999999
Q ss_pred HHHHHHH
Q 009679 434 GLENILK 440 (529)
Q Consensus 434 aL~~l~~ 440 (529)
+|..+..
T Consensus 526 ~l~~l~~ 532 (865)
T KOG1078|consen 526 YLKNLEE 532 (865)
T ss_pred HHHHhhh
Confidence 9988873
No 147
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.39 E-value=0.0011 Score=50.59 Aligned_cols=67 Identities=16% Similarity=0.356 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009679 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (529)
Q Consensus 131 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (529)
++...+++|+|++..++...+.+.+.|++|.++.... ..++-+++.|++++.|++..+++.++.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667889999999999999999999999999999764 478999999999999999999988777655
No 148
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00054 Score=43.14 Aligned_cols=40 Identities=48% Similarity=0.642 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 358 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
++....+++.|+++.|+.++.++++++++.|+|+|.|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467778899999999999998899999999999999863
No 149
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.025 Score=60.79 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=152.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 009679 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV 195 (529)
Q Consensus 119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 195 (529)
+.....+.++..+|..+.++|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443389999999999999985 222221111 1233455555566667778888888888875444 222222
Q ss_pred HhcCChHHHHHHhccchhHHHHHHHHHHHhhhh--cCC----CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009679 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 196 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
.. .++.++-.+ +..+...++++..+|..++ ... ..+....+...++.+...+-.+...+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 6678888999999998888 221 22234455666666666554443333333355555555
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009679 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 349 (529)
.........-.-.+++..+..+|.+.+..++..|+..+..++...+...-.-....+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222236778888889999999999999999999988775544333445788888888777 88899888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 009679 350 ISNITA-GNVNQIQAIIE 366 (529)
Q Consensus 350 L~nl~~-~~~~~~~~l~~ 366 (529)
|-.+++ ...+.++.++.
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888877 23555555554
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.34 E-value=0.073 Score=54.01 Aligned_cols=295 Identities=12% Similarity=0.117 Sum_probs=151.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009679 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
..++...+ ++ +..+.-|+..|......-|+..... +..++.+..+++..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 34555555 35 7889999999999998778876654 588899999999999999999999999987765444
Q ss_pred hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHH-hccCC
Q 009679 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT 272 (529)
Q Consensus 197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~-l~~~~ 272 (529)
+...|+++| ...++.-...+-++|..|...++ .+.+..+...+. +.|+.+++.++..|.. +-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 456788888 55566666666677766665432 334444444443 5688899999888753 22221
Q ss_pred chhHH--HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc----CChhhHHHHHhcCChHHHHHHh------ccCCch
Q 009679 273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKK 340 (529)
Q Consensus 273 ~~~~~--~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL------~~~~~~ 340 (529)
.+... .=.+.-++..+...|.+-...-......+|..+-. .+....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 11222344555666655333333334455555543 122233322 33333222 112 33
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH
Q 009679 341 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 414 (529)
Q Consensus 341 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 414 (529)
+.-.....++.. +.. .+.....++.+. ++|.+-++ ..+.+...+.++..++.++.......++. -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 333222222221 222 234445555543 77766555 44677888999999988765433333321 1334
Q ss_pred HHHhccCC--CCH----HHHHHHHHHHHHHHHhhh
Q 009679 415 PLCDLLNC--PDP----RIVTVCLEGLENILKAGE 443 (529)
Q Consensus 415 ~L~~lL~~--~~~----~v~~~~l~aL~~l~~~~~ 443 (529)
.|..++-. ..+ ..++..+.++..|....+
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 44444322 223 345667777777765544
No 151
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.03 Score=57.16 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=106.2
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009679 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (529)
Q Consensus 286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (529)
+.+-+++.+.++-+|.....+++.--.++. ..+++..|+.. .++. +.+||+.|+.+|+-++..+|++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~---- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ---- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh----
Confidence 444556667777777776665544333222 12445556555 3455 8899999999999999987884
Q ss_pred HHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009679 365 IEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 365 ~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
+|..+.+|... ++.||--|+.+|+-.+.+..... ++..|-.+..++..-|+..++-++..|+.-..
T Consensus 590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 46667777765 99999999999999888643222 34455555566667788999988888764322
Q ss_pred hhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009679 444 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 490 (529)
Q Consensus 444 ~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 490 (529)
.. .++-...| .+.+..+..+.+++.-.+--.||.
T Consensus 657 ~~--------~~pkv~~f-----rk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 657 EQ--------LCPKVNGF-----RKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred cc--------cCchHHHH-----HHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11 12223222 344666666666665444444443
No 152
>PRK14707 hypothetical protein; Provisional
Probab=97.29 E-value=0.42 Score=55.02 Aligned_cols=356 Identities=18% Similarity=0.173 Sum_probs=200.3
Q ss_pred hHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 009679 116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P-TDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 116 i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
+..|++.+ +.+++.+.+..+......++. ++..+..+ +...|..++..++. + ++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 33444444 344447788877777777777 33444443 44456667777766 4 455554444444445544 4444
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHH-hc
Q 009679 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSY-LS 269 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~-l~ 269 (529)
..+-.. .+-..++.|.+-.+......++.++. .+..+. ....... ..+-..|-.+-+-+|..+...+...|.. |.
T Consensus 242 ~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 444333 35556666656666655555554444 444332 2222222 2222333333345676776665555543 44
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh-ccCCchhHHHHHHH
Q 009679 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACW 348 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~ 348 (529)
+ +.+..+.+--.++-..|-.+-+-++..+...|...|.--....+...+.+ +...+..++.-| +-+ +..+...|+.
T Consensus 320 ~-d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp-~~~~c~~aa~ 396 (2710)
T PRK14707 320 D-DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWP-DTPVCAAAAS 396 (2710)
T ss_pred c-cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCC-CchHHHHHHH
Confidence 4 33333333222444444444455776677776666665555555555433 334444455544 445 5556666666
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009679 349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 428 (529)
Q Consensus 349 ~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~ 428 (529)
.|..=..+.++..+.+-..|+-..|-.+-+-++..+...++.+|.--..+ +.+-++.|--.++...|-.+-+.+|..+.
T Consensus 397 ~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 397 ALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPIC 475 (2710)
T ss_pred HHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence 66655555577665555554444444444557888999998888777665 55666666555666667777788998877
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009679 429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
..+.+.|..-+..... .++.|.-.+....|..|...++...+..|..-|..-
T Consensus 476 ~~aa~~La~~l~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 476 GQTASALAARLAHERR------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HHHHHHHHHHhcccHH------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 7666666544433322 355565666777888888888877776664444433
No 153
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.26 E-value=0.0023 Score=66.42 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=128.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH--------HHHh----cCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--------LVLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~~~~----~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
...|+.+|+. +++-..+..++.-+..|++.++. .+.+ ..++|.++..+ ...+...+.....+|++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 3456666654 34445566666666665543321 1222 24677777777 35556667778888888
Q ss_pred hhcCCCCCc-hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC---cchHHH
Q 009679 227 FCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP 302 (529)
Q Consensus 227 l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~ 302 (529)
...+-|... ......++|.|++.|.-+|..++..++.++.-+..........-++ -++|.++.+-.+.+ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 887654432 2244678889999999999999999999999887655433332222 56777777766554 568999
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
|+.+|+.+.+..+...-......++..|.+.|.++ ..-||++|..+=.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 99999999986554444444567888999999998 8899999986643
No 154
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.25 E-value=0.009 Score=57.07 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=138.7
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
.+...+.+..|+..|..-+-+.+..+..+++++....... .+.+.. ..-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 5566788999999999888999999999999998654332 233333 2123333334333466666666666666
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhcCCCCcchHHHH
Q 009679 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA 303 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a 303 (529)
.++...-.......+.+..+...+..++=+|..+|..++..+-.........++.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 66654323333345666677788888899999999999998765555454545544 467778889999999999999
Q ss_pred HHHHHHhhcCChhh---HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 304 l~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
+..||.+....... ...+-+..-+..++.+|++. +..++-+|..++--+.+.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhC
Confidence 99999998743322 22333556788999999998 999999999999888873
No 155
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.24 E-value=0.057 Score=51.39 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=126.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC--ChhhHH
Q 009679 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQTQ 319 (529)
Q Consensus 244 ~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~--~~~~~~ 319 (529)
...+..+.......|..++..+..+..... ..+.+.+ .-++..+...++.+...-+..|+++++-++-. ......
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334445555668899999999988774432 1122221 24677778888777766677788888877654 223344
Q ss_pred HHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHH--HHhc----------CChh
Q 009679 320 CIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEFE 383 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--~l~~----------~~~~ 383 (529)
.+++ .+.|.|...+.+.. ...+|..++.+|+-++. ..++.....++ .+..+.. +.+. +++.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence 4554 57788888887662 34566666666665543 34444443333 2331211 1221 1356
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~ 444 (529)
+...|+.+.+-++...+...+....+ ..++.|..+|++.+.+|+..+-++|.-|++....
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 88899988888887766544444333 4689999999999999999999999999877653
No 156
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.22 E-value=0.018 Score=50.07 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc
Q 009679 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (529)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 292 (529)
++.++.+++-+++-|+...| ....+.+|.+...|.++++.|+..++.+|.+|...+.-... ..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788889999998887653 34467789999999999999999999999999866432222 23347788888
Q ss_pred CCCCcchHHHHHHHHHHhhcC
Q 009679 293 RHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~ 313 (529)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 157
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.13 Score=52.91 Aligned_cols=281 Identities=16% Similarity=0.127 Sum_probs=161.7
Q ss_pred cCChHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009679 113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183 (529)
Q Consensus 113 ~g~i~~Li~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 183 (529)
.|+++.+...|... +++.-.+.|++.+.++.. .-+.....+.+.-+++.++..++++..-++..|+..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 47888888888321 224456677777777765 223333344555567888888899999999999999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHH
Q 009679 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDA 261 (529)
Q Consensus 184 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 261 (529)
+..+ +++..+-..+.+...+++ .+.+..+...|+.++..+..+.. ..-...+.+.+..|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9543 334444444667777777 55778888889999988887751 11112223344444444444456666665
Q ss_pred HHHHH-HhccCCchhHHHHHHh---CcHHHHHHhcCCCC------cchHHHHHHHHHHhhc---CCh--hhHHHHHhcCC
Q 009679 262 CWALS-YLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIVT---GDD--MQTQCIINHQA 326 (529)
Q Consensus 262 ~~~L~-~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~------~~v~~~al~~L~~l~~---~~~--~~~~~~~~~~~ 326 (529)
+..+. +.+..-......+... ..+.....++..++ ++-...|.++|..+.+ .-+ ...-.-+....
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 55443 3332211111212211 22233333443321 1223445555444432 111 11111224466
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh-hHHHHHHHHHHHHhcCCC
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGS 400 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~ 400 (529)
.|.+--+|++. ..+.-.+|+..+-+.+-.+.+ +. -+--|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus 643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 77777778777 777888999888877654222 11 1122455666666666543 667889999999988774
No 158
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.021 Score=58.86 Aligned_cols=238 Identities=15% Similarity=0.083 Sum_probs=153.8
Q ss_pred hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHh
Q 009679 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYL 268 (529)
Q Consensus 191 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l 268 (529)
-+...+..|+...|+.+. ....+........+|. .+... ......+++.+.+.++.. ...-...++.++.||
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 345566778888888887 4444455555666665 11111 111123444444444432 122355678888899
Q ss_pred ccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchhHHHHHH
Q 009679 269 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEAC 347 (529)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~ 347 (529)
+..+....+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.....+... ......+++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 8776655566888777787888888899999999999999999987766666666 34455555566555 777777888
Q ss_pred HHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009679 348 WTISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 348 ~~L~nl~~~~~~~~~~-l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
.++..|+.....++.. .--......+..++.+.++.++...+..+.|+ ..+..+....+.....+..+..+-.-.-..
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 7777777654444442 22244778888899999999999999999994 444556666666666665555544333333
Q ss_pred HHHHHHHHHH
Q 009679 427 IVTVCLEGLE 436 (529)
Q Consensus 427 v~~~~l~aL~ 436 (529)
.+..+..+|.
T Consensus 728 ~~~~~~~~l~ 737 (748)
T KOG4151|consen 728 KREDAAPCLS 737 (748)
T ss_pred hhhhhhhHHH
Confidence 3333333333
No 159
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.15 E-value=0.093 Score=52.84 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=141.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-----CChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009679 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIASGTSENTRVVID 155 (529)
Q Consensus 81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 155 (529)
...++.+..+|+++|.+++-.. ....+.+++.|..+.+++.|+.. + .++.+-..++|.-++...++.+..+++
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 4567899999999999998754 44566777999999999999876 4 789999999999999888888877776
Q ss_pred C-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------
Q 009679 156 H-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE------- 210 (529)
Q Consensus 156 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~------- 210 (529)
. +++..+...|.. .+......++.++.|+..+.+.... -.....++.++.++..
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence 4 677777765531 1345567788899999765543222 0122344444444321
Q ss_pred -chhHHHHHHHHHHHhhhhcCCCC------------CchhhhhchHHHHHHhhc----cC----ChHHHHHHHHHHHHhc
Q 009679 211 -HAKLSMLRNATWTLSNFCRGKPQ------------PLFEQTRPALPALERLIH----SN----DDEVLTDACWALSYLS 269 (529)
Q Consensus 211 -~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~L~~l~ 269 (529)
.........+..+|.|+-..... .........+..|+.+|. .. -.+.....+.+|..++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 12345566777777776221100 000111233444444443 21 2357778888888888
Q ss_pred cCCchhHHHHHHh-----------------CcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009679 270 DGTNDKIQAVIEA-----------------GVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 270 ~~~~~~~~~~~~~-----------------~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
...... +..+.. .+-.+|+.++.+..+.++..+...+..+|.
T Consensus 279 ~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 765433 333333 344556666666555566666666655554
No 160
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.13 E-value=0.0036 Score=47.89 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
++...+++|+|++..+......+.+.++++.++..-. ++.+|-+|+.|.|++.|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667899999999999999999999999999988763 2338999999999999999998887665544
No 161
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.12 E-value=0.018 Score=50.10 Aligned_cols=111 Identities=25% Similarity=0.263 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009679 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (529)
Q Consensus 254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 333 (529)
++.++.+++.+++.|+...+...+ ..++.+...|.++++.+|..|+.+|..+...+--. ++..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 578999999999999976654444 56789999999999999999999999998753311 122344778888
Q ss_pred hccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhc
Q 009679 334 LTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 334 L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
+.++ +++|+..|..++..+... .+..+ . ..++.++..+..
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~~i----~-~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKKRNPNII----Y-NNFPELISSLNN 112 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHhccchHH----H-HHHHHHHHHHhC
Confidence 8888 999999999999999875 34432 1 244445554544
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.07 E-value=0.039 Score=52.52 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHh---hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC--C
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T 146 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i---~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~--~ 146 (529)
.+...+..+.......|..++..+.+++... . ...++ ...++..+.+.++.+. .+-+..|+.++.-++-. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~--~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR-Y--LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c--cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence 3677888888778999999999999998653 2 22222 2346778888888887 56666777766666542 2
Q ss_pred hhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhHHHHHhcCChHHHHH--Hhcc---------
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLLA--QFNE--------- 210 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~i~~l~~--~l~~--------- 210 (529)
......+++ .+.|.|.+.+... ...+|..|+.+|+-++. ..+......++ .+..+.. ....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 233344443 4578888888763 45677777777777652 22221111111 2222211 1111
Q ss_pred chhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009679 211 HAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (529)
Q Consensus 211 ~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~ 270 (529)
..++.+...|+.+.+-|...-+.. ........+|.|..+|.++|.+|+..|..+|.-|..
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 113457777776666665544332 223457789999999999999999999999987753
No 163
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.068 Score=57.63 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=116.1
Q ss_pred hhhhchHHHHHHhhc----cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhh
Q 009679 237 EQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~ 311 (529)
..+..+.|.++...+ ..+|+++..|.-+|+.+..-+.. +.+ .-++.|+..+. ++++.+|..+.-.+|-++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchh
Confidence 344677888888885 45899999999999998866543 333 45688899986 789999999999999998
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009679 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a 391 (529)
-..+.... ..-+.|...|.++ ++.+|+.|..+|+++...+- +--.|.++.+..++.+++..++.-|-..
T Consensus 990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 76664332 4567788899998 99999999999999987521 2236889999999999999999988877
Q ss_pred HHHHhcCC
Q 009679 392 ISNATSGG 399 (529)
Q Consensus 392 L~nl~~~~ 399 (529)
...++..+
T Consensus 1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred HHHhhhcc
Confidence 77776655
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.04 E-value=0.029 Score=46.69 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=100.4
Q ss_pred HHHHHhCcHHHHHHhcCCCC------cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHH
Q 009679 277 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT 349 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~ 349 (529)
..++..+++..|+.++.++. ..+...++.++..+..+.- .....++..++..+...+.... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45777899999999997765 3567778888888877532 2334555667788888886653 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009679 350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 406 (529)
Q Consensus 350 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (529)
|-++...++.....+-+.=-++.|+..|...+++++..|...+-.+...+++...+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~ 140 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE 140 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 999999877766666665569999999999999999999999999988877665554
No 165
>PRK14707 hypothetical protein; Provisional
Probab=97.03 E-value=0.86 Score=52.69 Aligned_cols=399 Identities=17% Similarity=0.144 Sum_probs=212.8
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 73 LPAMVAGVW--SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 73 l~~l~~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
+.-+++..+ .++..-+ .++..|...+..+ ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..+
T Consensus 165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence 334444443 2333333 3444555545443 23344444445555555555667767776666555555555 44444
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009679 151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 228 (529)
..+ +...+...+..|+. ++...-.+++.++ ..++ +.+..+..+-.. .+...++-|.+-.+..+...+...|..=.
T Consensus 242 ~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 242 NEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 443 33345555666655 5554544555444 4444 444455544332 24445555656677777776666655433
Q ss_pred cCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHHH-HhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009679 229 RGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (529)
Q Consensus 229 ~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~ 306 (529)
.+++..........+..++..| +-+|..+...+..+|. .+++.. +..+.+--.|+-..|-.+-+-++..+...|...
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 3332222222222222233333 3355555555555554 455443 333333333554444455556777777777777
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 385 (529)
|+.-..++.+....+ +...+..++.-| +-+ +..+...++..|..-...+.+.++.+-..++...|-.+-+-+|..+.
T Consensus 398 LA~~l~~d~~l~~~~-~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 398 LAEHVVDDLELRKGL-DPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC 475 (2710)
T ss_pred HHHHhccChhhhhhc-chhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence 766666666555544 444444444444 556 66666777777766666656666555444444444344445677888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH-HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh
Q 009679 386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~-~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 464 (529)
..|+.+|..-... +++..+.|--.++...|-.+-+.++...... +.+.-..+..-. .....|...
T Consensus 476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-------------~l~~~~~~~ 541 (2710)
T PRK14707 476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-------------QLRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-------------hhhhhhhhH
Confidence 7777777665554 4455565555566667777777777553333 333333333111 124444445
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 465 EGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 465 g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
+....+..|..+++.+....|..-|...+.
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 556667777888888877777666666554
No 166
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.026 Score=55.86 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=106.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009679 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 323 (529)
.+-+++.+.|+-.+.....++.---.+.. ..|++..++.. .++.+..|+..|+-+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 45567777777777776665542211111 12677888888 677889999999999999987543
Q ss_pred cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009679 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 403 (529)
..++..+++|..++++.||...+.+|+-.|+++-.+. .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4566778888777799999999999999888754432 34455555667777899999999998887665443
Q ss_pred HHHHHHcCChHHHHhccCCCC
Q 009679 404 IKFLVSQGCIKPLCDLLNCPD 424 (529)
Q Consensus 404 ~~~l~~~~~l~~L~~lL~~~~ 424 (529)
-... .++.+.+.+++...+
T Consensus 657 np~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH--HHHHHHHHHHHhhhh
Confidence 2221 234555555554433
No 167
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.02 E-value=0.013 Score=52.83 Aligned_cols=187 Identities=16% Similarity=0.152 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCChhh--HHhhcCChHHHHHh-------hcCCC-C---hHHHHHHHHHHHHHhcCChhhH
Q 009679 84 DRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEF-------LSRDD-F---PQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 84 ~~~~~~~a~~~l~~lls~~~~~~~~--~~i~~g~i~~Li~l-------L~~~~-~---~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
+++.+..|+..|.+-... .+... ..-.-|.+..|++= ++.+. + ..-...|+..|..+|+ +|+.+
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 577899999999886543 23232 22355666666542 23221 1 1334566667777887 89999
Q ss_pred HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHH
Q 009679 151 RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 224 (529)
..++++.+.-.|..+|.. +.+.+|-.++..+|.+.. ++++.-..+...++++..++.+ ..++.-.+..|...+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 999999987777777754 347789999999999984 5566778888999999999999 555555666677776
Q ss_pred hhhhcCC--------CCCchhhhhchHHHHHH-hhccCChHHHHHHHHHHHHhccCCch
Q 009679 225 SNFCRGK--------PQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 225 ~~l~~~~--------~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
..+..++ ....+..+..++..++. +...+++.+...+++|...|++++..
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 6665543 11223334455554443 34467889999999999999988753
No 168
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.015 Score=59.97 Aligned_cols=244 Identities=14% Similarity=0.066 Sum_probs=157.9
Q ss_pred cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009679 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (529)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 222 (529)
......+...+..|+...|+++.....+..+-....+|. .+...+.. ....++++...+.......-....+.
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 334555666778899999999988777777777777776 33322211 12355666666633333333445777
Q ss_pred HHhhhhcCCCCCc-hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCCCCcchH
Q 009679 223 TLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVL 300 (529)
Q Consensus 223 ~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~ 300 (529)
++.||+....... ...-...++.+-.++..+++..+..++..+.||.-++.-....+.+ ...++....++........
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 8888887763322 2333445555666777888999999999999999877655555555 2445566666666666667
Q ss_pred HHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009679 301 IPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (529)
Q Consensus 301 ~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 379 (529)
..++.++..|+......+. ..-.......+..++.++ +.+++......+.|+.....+....++....++.+..+-.-
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL 723 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 7777777766665554444 233446778889999998 99999999999999776656666666666666666655444
Q ss_pred CChhHHHHHHHHHHH
Q 009679 380 AEFEIKKEAAWAISN 394 (529)
Q Consensus 380 ~~~~v~~~a~~aL~n 394 (529)
.....++.+..+|..
T Consensus 724 ~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 724 NRAPKREDAAPCLSA 738 (748)
T ss_pred hhhhhhhhhhhHHHH
Confidence 333444444444443
No 169
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.88 E-value=0.065 Score=54.71 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=140.7
Q ss_pred hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009679 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
+...++|.|++++...|..+|...+.-+-.....-. ..+++..+++.+...+.+.++.++..++.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~- 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK- 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence 456799999999999999999988877776665543 4467778999999999999999999999999988863222
Q ss_pred HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
..+....+..+..+-.+. ...+|-....+++-++....... .+.-....+.+.+.++-..-|..+.+++.....
T Consensus 403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 133434455555554444 77888888888888876522221 222234455556777777888899988887765
Q ss_pred CCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009679 398 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 445 (529)
Q Consensus 398 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~ 445 (529)
.-+... +...+++.++-+.-+++..++..+..++...+...++.
T Consensus 477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 433222 34568888999999999999999999888887666543
No 170
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.072 Score=55.47 Aligned_cols=218 Identities=10% Similarity=0.097 Sum_probs=134.9
Q ss_pred cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHH
Q 009679 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (529)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 289 (529)
.++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44556788899999999998765555566678999999999999999998999988888765432 5667777
Q ss_pred Hh-cCCC---CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009679 290 EL-LRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (529)
Q Consensus 290 ~l-L~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (529)
+. .+.. .++.+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|.-........+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 74 3222 1233444445666665433322222222 4566677777877 888899999999999873222222211
Q ss_pred HcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHH--HHcCChHHHHhccCC-CCHHHHHHHHHHHHHH
Q 009679 366 EAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNC-PDPRIVTVCLEGLENI 438 (529)
Q Consensus 366 ~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l 438 (529)
..++..++.+... +.+-+|+.|+..+..+..+-+.+....+ .-.+....+..+... ++..++..+..++..+
T Consensus 887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 1144555555554 4788999999999999887554443322 111233333444333 2333444444444444
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.75 E-value=0.047 Score=55.35 Aligned_cols=248 Identities=13% Similarity=0.118 Sum_probs=130.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhc
Q 009679 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP 241 (529)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 241 (529)
++.... .+...+..|...|.....+-|...+. ++..++.++ .+.+..++..|...|..+|.+.+ ..+..
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~k 96 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSK 96 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhH
Confidence 334444 57889999999999999888877655 578899999 78899999999999999999752 34567
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC---CCCcchHHHHHHHHHHhhc-CChhh
Q 009679 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVT-GDDMQ 317 (529)
Q Consensus 242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~al~~L~~l~~-~~~~~ 317 (529)
+...|+++|.++++.....+=++|..+...++. +.+..++..+. .+++.+|..++..|..-.. -....
T Consensus 97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 888999999999988777777777777654432 22333333332 4567788888877743332 11111
Q ss_pred HH--HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH------hcCChhHH
Q 009679 318 TQ--CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLL------LNAEFEIK 385 (529)
Q Consensus 318 ~~--~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~l~~L~~~l------~~~~~~v~ 385 (529)
.. .=.+.-++..+.++|.+- ..+--...+.+|..+-. .+....+.+++ .+.+.. ...|++..
T Consensus 169 ~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~I 242 (556)
T PF05918_consen 169 LTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESI 242 (556)
T ss_dssp S---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHH
Confidence 11 112223445566666553 32222333444444443 23444444443 222222 22244444
Q ss_pred HHHHHHHHH----HhcC-CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 386 KEAAWAISN----ATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 386 ~~a~~aL~n----l~~~-~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
...+.++.. +..+ .+.....++++. +++.+..+ +.+.+...|.++..+.
T Consensus 243 drli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s 296 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELS 296 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHc
Confidence 434443333 2222 234566666553 55555554 2233334444444443
No 172
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.75 E-value=0.46 Score=46.61 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-Hhh--CC-CchhHHHHHhcCChHHHHHHhc
Q 009679 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVA--GD-SPKCRDLVLSNGALMPLLAQFN 209 (529)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~--~~-~~~~~~~~~~~~~i~~l~~~l~ 209 (529)
.|+.+|-.+....+.....+.+.+++..++..+..+-....+. . +.. .. .++.+..... ...+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~i- 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIPPEYKESSVD-------GYSI- 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCCCCccccccc-------cccc-
Confidence 4677777788777777888899999999999885432221111 0 110 00 0010000000 0001
Q ss_pred cchhHHHHHHHHHHHhhhhc-CC--CCCch-hhh-hchHHHHHHhhccC---ChHHHHHHHHHHHHhccCCchhHHHHHH
Q 009679 210 EHAKLSMLRNATWTLSNFCR-GK--PQPLF-EQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIE 281 (529)
Q Consensus 210 ~~~~~~~~~~a~~~L~~l~~-~~--~~~~~-~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~ 281 (529)
........+..+.++..+.. .. ..... ... ..++..|..++.+. .+.+...++..+..+..+.+.....+.+
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 11223445555555665555 22 11111 122 34555666677655 5789999999999999998888889999
Q ss_pred hCcHHHHHHhcC-C---CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 009679 282 AGVCPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (529)
Q Consensus 282 ~~~~~~L~~lL~-~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 337 (529)
.|+++.++..+. . ++.++....-.+++.+|- +....+.+.+.+.++.++.++.++
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999987 4 345566666677888887 455667788889999999999775
No 173
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.75 E-value=0.028 Score=58.80 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=114.9
Q ss_pred hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009679 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 315 (529)
....++|.+++.+.+.+..++..-+.+|+++..+-+. +.+.. ..++|.|++.|+-++..++..++.++..+.....
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 3478899999999988888899999999998876553 32322 2678899999999999999999999998887665
Q ss_pred hhHHHHHhcCChHHHHHHhccCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009679 316 MQTQCIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~ 393 (529)
.....-++ -++|.++.+=.+..+ ..+|..|..++..+++--|...-......++..|+..|+++..-||++|..+=.
T Consensus 942 tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 44433333 466777776666521 578999999999999833333323333447888888898888889999987755
Q ss_pred HHh
Q 009679 394 NAT 396 (529)
Q Consensus 394 nl~ 396 (529)
+..
T Consensus 1021 ~W~ 1023 (1030)
T KOG1967|consen 1021 NWY 1023 (1030)
T ss_pred hhh
Confidence 543
No 174
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.73 E-value=1.4 Score=49.32 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=99.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.+..++..|..+...+|-.|+++|..+...+..--....+..|+... +.+.. ..||.+|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 36677777888889999999999999987642222233333333333 34445 78999999999987776666554
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--cchhHHHHHHHHHHHhhhhc
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~ 229 (529)
... ..+..-+.++...||..++.++..+|...|.+-.. +..+.++|. .+....++.-++.++.++..
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 443 33444455678899999999999999887764322 334444443 33344588999999999988
Q ss_pred CC
Q 009679 230 GK 231 (529)
Q Consensus 230 ~~ 231 (529)
.+
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 76
No 175
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.73 E-value=0.054 Score=45.10 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=98.0
Q ss_pred hHHHHHhcCChHHHHHHhccchh-----HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHHHHHHH
Q 009679 191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW 263 (529)
Q Consensus 191 ~~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~ 263 (529)
+...++..+++..|+.++..+.. .++...++.++..|..+.--........++..++..+... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788999999999965542 4777888888888888753233334456667777777643 7889999999
Q ss_pred HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009679 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
.|-+++.+++.....+.+.=-++.|+..|...++.++..|+..+..+....+..
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988877777777677999999999999999999999888887665543
No 176
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.71 E-value=0.083 Score=51.29 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=103.0
Q ss_pred ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHH-HHHhccCCchhHHH
Q 009679 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA 278 (529)
Q Consensus 200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-L~~l~~~~~~~~~~ 278 (529)
++..++..|.++.+...+..|+..|..+|...+..-+....-++..+++.-.+.++++...|... +.-++.+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 45667788866688899999999999999998766666666677777777666666665555544 33444444422
Q ss_pred HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
.+..+..++...+......++.++..++..-....-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 223344455456777777888888888875443222223347889999999998 89999999999987764
No 177
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.70 E-value=0.18 Score=47.95 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=108.6
Q ss_pred CChHHHH-HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchh
Q 009679 114 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKC 191 (529)
Q Consensus 114 g~i~~Li-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~ 191 (529)
+++..|+ ..+.+++ +.+|..|+.||+-.+--+.+.... .++.+...+...+..++..|+.++..+.. ++...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 6778888 899999999999999866544333 35778888877899999999999998873 22211
Q ss_pred HHHHH-------hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----cCChHHHHH
Q 009679 192 RDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTD 260 (529)
Q Consensus 192 ~~~~~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~ 260 (529)
-+... ....+..+...+ .+.+++++..++..++.|........ ...++..|+-+-- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 123455566666 55588899999999999877652222 1233333332222 224556666
Q ss_pred HHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC
Q 009679 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (529)
Q Consensus 261 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 295 (529)
....+-..+...... +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666666666665544 4455557777777766543
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.24 Score=48.60 Aligned_cols=258 Identities=15% Similarity=0.135 Sum_probs=142.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHH
Q 009679 167 SSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALP 244 (529)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~ 244 (529)
.+++..++..|+.+|+|.+...| +++.. ..-.+..++.-|.++.+.++.-.+..+|..+...... ......-++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 34788999999999999998744 33322 2235666777775666788888888888777665422 22223344555
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-HHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009679 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-VIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 321 (529)
.+..+..+.+++.+..+...++.|+......-+. +.+ .+....++-.+.++++.+ ..||+..-..+.-+- ..+.+
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l-~rke~ 423 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL-VRKEL 423 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh-HHHHH
Confidence 6777888999999999999988887543222222 221 122233444455666543 456666655554222 11111
Q ss_pred HhcCChHHHHHHhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009679 322 INHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (529)
. +.++. .+ ...-...+. ..-|++ .+....++....+... ...++++.-+.++..|..--.+...+..
T Consensus 424 ~--~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 Y--HLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred H--HHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHHHHHHHHHHHHHHHhH
Confidence 0 11111 11 110111111 111211 1222223333322221 2223333333555555555555555545
Q ss_pred HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009679 401 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 401 ~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
+..+.+.-...+...|..+...+-+++...+..|+..+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555554444456778888888899999999999987754
No 179
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.67 E-value=0.083 Score=47.74 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=116.1
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHh-------cCCCC--c---chHHHHHHHHHHhhcCChhhHHH
Q 009679 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~l-------L~~~~--~---~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
+++.++.|+.-|+.--+..++..-.+..+ |.+..|++= +..+. . .-...|+..+..++. .++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 56778888777776655544544444443 655555432 23222 1 223456666666676 5566777
Q ss_pred HHhcCChHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009679 321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (529)
Q Consensus 321 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl 395 (529)
++++++.-.|..+|+... -..+|-.+..+++.+.. ++++.+..+++.+++|..+..|+.++.-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999888888886541 25688899999999998 5678888899999999999999999988999999999999
Q ss_pred hcCCCHHHHHHHHHc--------CChHHHH-hccCCCCHHHHHHHHHHHHHHHH
Q 009679 396 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 396 ~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~~l~aL~~l~~ 440 (529)
... .....|+++. .++..++ .+.+.+++.+.+.+.++...+..
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 873 3444443321 1222222 22345566666666666655543
No 180
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.25 Score=50.55 Aligned_cols=109 Identities=21% Similarity=0.225 Sum_probs=82.7
Q ss_pred hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-Ch
Q 009679 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DD 315 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~ 315 (529)
..+.+.+..+++...+++..|+..+|..|..+++.....-+.+. .++...+..-+.+..+.||..|+.+|+.+-.. .+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 36678888888888899999999999999999875443323333 37778888888889999999999999998632 22
Q ss_pred hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009679 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 352 (529)
+ +..+...+..+++..++++||+.|...|.+
T Consensus 160 e------e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E------ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C------cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 2 124566788888776699999988765553
No 181
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.65 E-value=0.0065 Score=47.78 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=58.0
Q ss_pred ChHHHHhcc-CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009679 412 CIKPLCDLL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 490 (529)
Q Consensus 412 ~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~ 490 (529)
++..|+.+| .+.|+.+...++.=|+.++...+.. ...+++.|+-+.+-.|+.|+|++|+..|...++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 478888988 4567888888999999999887543 677899999999999999999999999999988
Q ss_pred hhC
Q 009679 491 TYW 493 (529)
Q Consensus 491 ~~~ 493 (529)
++.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 182
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.021 Score=61.37 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=122.5
Q ss_pred CChHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009679 114 GVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (529)
Q Consensus 114 g~i~~Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 189 (529)
.+.|.+++.+..+ ++|++|.+|.-+|+.+..-+.+.... .+|.|+..+. ++++.+|.+++-++|-++..-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4678888887432 23999999999999998866555443 3699999998 6999999999999999986655
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009679 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
..-+. .-+.|...| .+.++.++++|..+|++|...+ +..+.|.++.+..++.++++.|..-|=.....|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 43222 345666777 7889999999999999998764 5667899999999999999999888887888787
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCCC
Q 009679 270 DGTNDKIQAVIEAGVCPRLVELLRHP 295 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~~ 295 (529)
...+.. - +++|-++.-|+++
T Consensus 1064 ~k~n~i-y-----nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI-Y-----NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccch-h-----hhchHHHHhhccC
Confidence 654321 1 4556666666554
No 183
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.28 Score=48.08 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=108.7
Q ss_pred cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 009679 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (529)
Q Consensus 297 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 372 (529)
+.-+..-...++.+.....-. +.|.+.-++..+ .++ +..+|..|+..|+|.+.+.|+.+...... .+..
T Consensus 231 ~~~ritd~Af~ael~~~~~l~-----~~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~lda 303 (533)
T KOG2032|consen 231 ENGRITDIAFFAELKRPKELD-----KTGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDA 303 (533)
T ss_pred ccchHHHHHHHHHHhCccccc-----ccccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHH
Confidence 344444444555554432211 334444444433 455 77899999999999999866655544433 4555
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHHhcCCCHHH-HHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009679 373 LVNLLLN-AEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 450 (529)
Q Consensus 373 L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~ 450 (529)
++.-|-+ .+.+|..++..+|..+........ -.+++ .+--.+..+.++.+++++..+...++.+........+
T Consensus 304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e--- 378 (533)
T KOG2032|consen 304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE--- 378 (533)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch---
Confidence 5555444 478899999999988876443222 22332 2455677788999999999999999988877643321
Q ss_pred CCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009679 451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
..|.+.+. +....+.--..++++.+...+...+..+++.
T Consensus 379 ----~~Fte~v~--k~~~~lllhl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 379 ----EFFTEQVK--KRLAPLLLHLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred ----hhhHHHHH--hccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence 11232221 1222222224667887777776666655443
No 184
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.56 E-value=0.16 Score=49.38 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=109.8
Q ss_pred HHHHHHHH-HHhhhhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc
Q 009679 215 SMLRNATW-TLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (529)
Q Consensus 215 ~~~~~a~~-~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 292 (529)
+-+..|.. ...-+|.+.-.........++-.+++.|.+ .++.++..|++.|..++.+.+.+...-.+ -.+..+++.-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa 380 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA 380 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence 33444444 444455554444445556777788888887 68889999999999999876544221111 3445555555
Q ss_pred CCCCcchHHHHHHHHH-HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCH
Q 009679 293 RHPSPSVLIPALRTVG-NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGII 370 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l 370 (529)
.+..+.+...|..... -++...+.. .+..+..++... +...-..+...+..++.. +.+....++. ++.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-dia 450 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DIA 450 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hhh
Confidence 6666666666555433 344433322 233445555455 555556666677777763 3444444443 499
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009679 371 GPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
|.+++...+.+..||+.|++||..+...
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 9999999999999999999999988653
No 185
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.07 Score=55.57 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=141.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009679 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (529)
Q Consensus 119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (529)
.+..+.++. +.++-.++.-|..+...- +....+...+++...+..|.+.+.-+--.|+..+..+|.--+ .
T Consensus 732 ai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e 801 (982)
T KOG4653|consen 732 AISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E 801 (982)
T ss_pred HHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence 344455555 678999999999999833 455556677899999999999999999999998888875432 2
Q ss_pred CChHHHHHHhccc---hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchh
Q 009679 199 GALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (529)
Q Consensus 199 ~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~ 275 (529)
.+++.+...-... ..++.+-.+-.++.++..........+...++...+..++++|...+..++..++.+|......
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 3556665532111 1123333344666666655433444455677778888888888888999999999998653322
Q ss_pred HHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhc---CChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 276 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 276 ~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
....+. .++..++.+.. +++..+|+.|+..+..+..+.....-.+... .....+........+..++..|+.++-
T Consensus 882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 222211 34445555543 4677899999999999988766443333321 222333333333325566666666654
Q ss_pred HH
Q 009679 352 NI 353 (529)
Q Consensus 352 nl 353 (529)
.+
T Consensus 961 ei 962 (982)
T KOG4653|consen 961 EI 962 (982)
T ss_pred HH
Confidence 33
No 186
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.38 E-value=0.031 Score=47.38 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=101.4
Q ss_pred HHHHHhcC--CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009679 286 PRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (529)
Q Consensus 286 ~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (529)
..++..|. ...+.++..++-++..+. +.... -....+-+.+...+... +.+-...++.+++.+.-+.++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444 356788999999998885 22222 22334445666666666 6667888999999999988998888
Q ss_pred HH-HcCCHHHHHHHHh--cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHH-HHHHHHHHHHH
Q 009679 364 II-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN 437 (529)
Q Consensus 364 l~-~~~~l~~L~~~l~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~-v~~~~l~aL~~ 437 (529)
++ ..|+++.+..++. .++..++..++.+|..-+. +...+.+ +...+++.|..+++. ++.. ++..++-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77 6788999999999 6788999999999988876 3344444 455689999999964 4444 66666655543
No 187
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.34 E-value=0.035 Score=39.61 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 009679 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG 411 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 411 (529)
.+.|.|+++++++. +.....+.+.++++.++++.... ...+|-.|.++|+-++. +.+-.+.|.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999886 66677777789999999998864 67899999999999987 556666665554
No 188
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.28 E-value=0.0087 Score=47.07 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=60.8
Q ss_pred hchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009679 240 RPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 240 ~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
..++..|+.+|. +.|+.+..-||.=|+.++...+.....+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467788899994 5588889999999999998877776767777999999999999999999999999988765
No 189
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.27 E-value=1.6 Score=44.48 Aligned_cols=287 Identities=13% Similarity=0.098 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009679 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (529)
Q Consensus 85 ~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (529)
-..|..|+..++..+..-.-.++.. ++..--.++..+..++.|..+...|..++.+......... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 3466778888887775542222222 4445556776665478899999999998885543111111 12223
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--------------------------hHHHH
Q 009679 165 LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSML 217 (529)
Q Consensus 165 lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~ 217 (529)
.+.. ..++--..-+.+|..|+.++.+. ...+.++.+.+...+.... +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 3333 33444445566777777666554 2245666666666662111 22333
Q ss_pred HHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhc
Q 009679 218 RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL 292 (529)
Q Consensus 218 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL 292 (529)
...+..+.++.... .......+.+++..++.+.. +..+.....++..+-.+..+ +.+... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 44445555555544 33333444555555555533 23344444555444444332 111111 2334444442
Q ss_pred CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009679 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE- 366 (529)
Q Consensus 293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~- 366 (529)
. .......+-.++.|++...-.+ ..+..|..+|..+ .+..+.+.|+..+..+..+..+....-+.
T Consensus 227 ~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 N--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred c--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 2 2367778888999998643322 2355677777322 14556678888898888764222211121
Q ss_pred c--CCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 367 A--GIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 367 ~--~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
. -+++.+...++.+++.+-.+++..+.++..
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 278889999998887787788888888873
No 190
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.26 E-value=0.033 Score=49.02 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=79.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC--------CCChHHHHHHHHHHHHHh
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNIA 143 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~--------~~~~~v~~~a~~~L~~l~ 143 (529)
....+++.+.+..... ..+..|+..+.......++.+++.|++..|+++|.. ....+....++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4456777787655433 555666666654433457888899999999998752 122578999999999999
Q ss_pred cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009679 144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (529)
Q Consensus 144 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 185 (529)
. +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 4555666665 689999999999999999999999999886
No 191
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.25 E-value=1.3 Score=47.50 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=125.5
Q ss_pred HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchh----HHHHHHHH
Q 009679 154 IDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNAT 221 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~ 221 (529)
.+.|++..++.++.+ ....+....+..|...+.- +.+|..+++.++++.|+..+. .... ..+....+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 356889999888866 2345666666666665544 568999999999999999885 2222 45555555
Q ss_pred HHHhhhhcCCCCCch-------------hhhhchHHHHHHhhcc----CChHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009679 222 WTLSNFCRGKPQPLF-------------EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (529)
Q Consensus 222 ~~L~~l~~~~~~~~~-------------~~~~~~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 284 (529)
.++-.+......... .....-+..+++.+.+ .++.+....++.|.+|+.+..+..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 555444332211000 0122335566666654 368899999999999999988888877653
Q ss_pred HHHHHHhc--CCCCcchHHHHHHHHHHhhcCC------hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 285 CPRLVELL--RHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 285 ~~~L~~lL--~~~~~~v~~~al~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
+...+.+= +.....--...+.+++.++.+- ....+.+++.|++...+..|... -+.. .+ .
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~---~ 338 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KN---T 338 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------cc---C
Confidence 22222321 1111111123466666666543 35567778888888888877654 3333 11 1
Q ss_pred CHHHHHHHHHcCCHHHHHHHHh
Q 009679 357 NVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 357 ~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
++......+....+|.++.+|.
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHH
Confidence 2333455555666777776665
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.24 E-value=0.56 Score=49.96 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=119.3
Q ss_pred HHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHH--HHHHhhccCCh-H
Q 009679 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 256 (529)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~ 256 (529)
+++++....+.....+++.+++..+...+......++...+...+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45566777777778888999999999999766778889999999999988753333322222222 33334444444 7
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHH-HHHHh
Q 009679 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPC-LLDLL 334 (529)
Q Consensus 257 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~-L~~lL 334 (529)
....++..|+.+....++... ...+..+...+......-. ........ ..+.. +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHh
Confidence 777777777777655432111 1112222222222221111 11111222 23333 66666
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009679 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISN 394 (529)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~n 394 (529)
..+..+.....|.|++.+++...++....+.+.++++.+.+.-... ..+++.++...+.+
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 6655778899999999999998888888888888988887764433 44555555554443
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.20 E-value=0.019 Score=54.69 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=82.4
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH-
Q 009679 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV- 408 (529)
Q Consensus 330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~- 408 (529)
+...+++. ++.+|..|..++|-++--+.+... ..++.+...+..++..++..|+.++..+....+........
T Consensus 32 I~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 32 ILPAVQSS-DPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 44677888 889999999999998875454322 24667888887789999999999999998643333333222
Q ss_pred ------HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009679 409 ------SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 409 ------~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
...+++.+...+.+.+++++..+.+++.+|+-.+.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 23567888899999999999999999999987654
No 194
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.04 E-value=1 Score=40.18 Aligned_cols=199 Identities=15% Similarity=0.092 Sum_probs=125.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHh-------hcCC----CChHHHHHHHHHH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRD----DFPQLQFEAAWAL 139 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~l-------L~~~----~~~~v~~~a~~~L 139 (529)
+.+++++-.+.+ +..+..|+..+.+......+-..-.+-.-|....|++= |..+ ..+.-...|+..|
T Consensus 26 dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll 103 (293)
T KOG3036|consen 26 DKAYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL 103 (293)
T ss_pred cchhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence 346666655554 44566777777765432211111122233444444331 1111 1123456666667
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhccchh
Q 009679 140 TNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAK 213 (529)
Q Consensus 140 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~ 213 (529)
-.+++ .|+.+..++++.+--.|-.+|.. +.+-+|-.++..|+.+.. ++.++-..+...++++.+++.+ ..++
T Consensus 104 QcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GS 181 (293)
T KOG3036|consen 104 QCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGS 181 (293)
T ss_pred HHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hccc
Confidence 77776 78999999988765555566643 568899999999999984 4455667788899999999999 6666
Q ss_pred HHHHHHHHHHHhhhhcCCCC--------CchhhhhchHHHHH-HhhccCChHHHHHHHHHHHHhccCCc
Q 009679 214 LSMLRNATWTLSNFCRGKPQ--------PLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~l~~L~-~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
...+..|..++..+..++.. ..+..+..++..++ ++.+.+++.+...++++..+|++++.
T Consensus 182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 66677777777766655422 12222233444333 44456788999999999999998763
No 195
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.03 E-value=0.3 Score=47.86 Aligned_cols=156 Identities=12% Similarity=0.162 Sum_probs=108.5
Q ss_pred HHHHHHHHhc--CCCCChhhHHhh-cCChHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009679 91 ATTQFRKLLS--IERSPPINEVIQ-SGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (529)
Q Consensus 91 a~~~l~~lls--~~~~~~~~~~i~-~g~i~~Li~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (529)
-++.+..+.. .......+.+++ ..+...|...+++.. -+.+-..|+.++..+....|..-..+.+.|+++.++..
T Consensus 80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~ 159 (379)
T PF06025_consen 80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA 159 (379)
T ss_pred HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence 3444444444 222334555667 566677777777654 26788999999999999899999999999999999998
Q ss_pred hC-C---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhH------HHHHHHHHHHhhhhcCCCCCc
Q 009679 166 LS-S---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPL 235 (529)
Q Consensus 166 L~-~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~ 235 (529)
+. . ++.++....-.+|+.||-.... .+.+.+.+.++.+++.+...... +.....-..+-.|.++.|...
T Consensus 160 i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk 238 (379)
T PF06025_consen 160 ITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK 238 (379)
T ss_pred HhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence 88 4 6788888888999999977664 57778889999999988432211 334444555667777765555
Q ss_pred hhhhhchHHHHH
Q 009679 236 FEQTRPALPALE 247 (529)
Q Consensus 236 ~~~~~~~l~~L~ 247 (529)
......++..+-
T Consensus 239 ~~i~~~ii~~l~ 250 (379)
T PF06025_consen 239 PDIIDAIIKILD 250 (379)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 196
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.99 E-value=0.29 Score=49.93 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=119.9
Q ss_pred hcCCCHHHHHHHHHHHH--HHhcCCCCChhhHHhhcCChHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009679 80 VWSDDRNIQLDATTQFR--KLLSIERSPPINEVIQSGVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVI 154 (529)
Q Consensus 80 L~s~~~~~~~~a~~~l~--~lls~~~~~~~~~~i~~g~i~~Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 154 (529)
+...+++.-..|...++ .++-+++ -+-+.+-|...+...+. +++.++..|.-+|..+.+-+.+...
T Consensus 862 IggtsEddf~da~~fikE~ElLyGek------svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~--- 932 (1128)
T COG5098 862 IGGTSEDDFVDAFFFIKEKELLYGEK------SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS--- 932 (1128)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhchh------HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH---
Confidence 34444445555555554 3343321 12234556666666551 2489999999999998875554433
Q ss_pred hCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009679 155 DHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (529)
Q Consensus 155 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (529)
..+|.|+..+. +++|.+|.+|+-.++.++..-....+ ..-..|.+.| .+.+..+++.++.++.+|....
T Consensus 933 --ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLyrrL-~De~~~V~rtclmti~fLilag-- 1002 (1128)
T COG5098 933 --EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLYRRL-GDEDADVRRTCLMTIHFLILAG-- 1002 (1128)
T ss_pred --HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc--
Confidence 34699999998 69999999999999988743221111 1345677777 7788999999999999887653
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009679 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
...+.|-++.+..+|.++|..+...|-..+..++..+.
T Consensus 1003 --q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 1003 --QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred --ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 23457888999999999999998888888888886554
No 197
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.94 E-value=2.1 Score=46.00 Aligned_cols=240 Identities=16% Similarity=0.178 Sum_probs=142.7
Q ss_pred hchHHHHHHhhcc-----CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC----CCC----cchHHHHHHH
Q 009679 240 RPALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRT 306 (529)
Q Consensus 240 ~~~l~~L~~ll~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~~~----~~v~~~al~~ 306 (529)
.+++..++.++.+ .+.+....++..|.+.+.-. .+.+.+++.++++.|+..+. .+. ..+....+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3556666666653 23456666777777777664 44577888999999888873 333 5677777777
Q ss_pred HHHhhcCChhhHHHH----H--------hcCChHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009679 307 VGNIVTGDDMQTQCI----I--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371 (529)
Q Consensus 307 L~~l~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 371 (529)
+..+........... . +..-+..++..+.++. ++.+....+.+|.+++.++++..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 777765322111000 0 1122566666665542 57888999999999999999988888873 33
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------HH--------HH
Q 009679 372 PLVNLLLNA--EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCPD--------PR--------IV 428 (529)
Q Consensus 372 ~L~~~l~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~--------~~--------v~ 428 (529)
..+++=.-+ ...--...+.+++.++.+. .......+++.|++...+++|...- ++ -.
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322111 1010123355566665432 2355677888999988888774321 22 23
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHHhhCCC
Q 009679 429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~ 495 (529)
..+|..|.-+...... .+.+...+++..+..|- -++...|-..|.++|+.+-+.
T Consensus 353 p~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred HHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 3455555555543321 22233456777777774 344667888888888877653
No 198
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.92 E-value=0.5 Score=47.39 Aligned_cols=110 Identities=21% Similarity=0.199 Sum_probs=82.2
Q ss_pred hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009679 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 315 (529)
...+.+.+..++..+.++|..|+..+|..|..+++.-.+ +...+-.+++..|.+-+-+..+.|+..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456678888899999999999999999999999876543 3445555888888888888899999999999998864332
Q ss_pred hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
... ..+...+..+++..++.+||..|..-+.
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 211 1233456777766558889988765443
No 199
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.92 E-value=1.2 Score=39.83 Aligned_cols=141 Identities=10% Similarity=0.148 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHH
Q 009679 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGP 372 (529)
Q Consensus 298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~ 372 (529)
.-...|+..+..++++ ++.+..++++.+--.+..+|... ....+|..+..+|+.+.. ++.+.+..++..+++|.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3445566666666664 55566677777766777777433 256789999999999998 56777788889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--------CCh-HHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 373 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--------GCI-KPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 373 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l-~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
++..++.++...|.-|...+..+.... ....|+++. -++ +....+.+.+++.+...++.+..++...
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988643 333333221 112 2344455677888888888777766543
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.86 E-value=0.013 Score=34.14 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.1
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
++|.+++++.+++++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999753
No 201
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.77 E-value=0.21 Score=53.40 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=130.9
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHH
Q 009679 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (529)
Q Consensus 241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~ 319 (529)
.+-+.+..-+.+.+..-+..++..+............ -...+.+-.++.+. .+.+..+...++.+|.-++........
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 3344455555577777888888888877655431111 11124444444443 456778888999999999987654433
Q ss_pred HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.. ..++++.++.-+... ...++..+..++-.++..++- ..+.+.+...+.++++.++.++...+.......
T Consensus 332 ~~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 KY-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred HH-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 33 337888899999887 777887777666666553222 126788889999999999999888888877654
Q ss_pred CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++.....-.-.++++.++....+.+.+|+.+++.++..+++.-
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 4222222122457888899889999999999999999887653
No 202
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.76 E-value=0.013 Score=34.07 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.7
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4789999999999 9999999999999985
No 203
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.71 E-value=2.8 Score=42.68 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009679 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (529)
Q Consensus 83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (529)
...+.|..++..+..++..... .. .... ..+...+..+..++--..-+.+|..++.+..+. ...+.++.+.|
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~-~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L 112 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDS-SS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL 112 (464)
T ss_pred CCHHHHHHHHHHHHHHHHcccc-cc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence 3467888888888888765422 01 1111 122333333322322223334444555533333 22566777877
Q ss_pred HHhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHH
Q 009679 163 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (529)
Q Consensus 163 ~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 215 (529)
...+..- +.......+..+.|+...+...-+.-.-.+.+..++.+.....+..
T Consensus 113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~ 192 (464)
T PF11864_consen 113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence 7766321 1222333444445554433221111111223444444443344444
Q ss_pred HHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-
Q 009679 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH- 294 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~- 294 (529)
....++..+-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|+.+|.+
T Consensus 193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence 4455555555444433 111222334444444443222 55556666777777543321 346777888832
Q ss_pred -----CCcchHHHHHHHHHHhhcCChhhHHHHHhc---CChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 295 -----PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 295 -----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
.+..+...|+..++.+..+.......-+.. -+++.+...++.. +..+-.+....+.++..
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 234567789999999988763322222221 2678888888877 77777777777777763
No 204
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=3.4 Score=43.01 Aligned_cols=299 Identities=15% Similarity=0.077 Sum_probs=166.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHH
Q 009679 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMP 203 (529)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~i~~ 203 (529)
+|+.++..+....++.+ -.|+++.+...|.. .+..-.+.|++.++++.. ..+.....+++.-+++.
T Consensus 389 aal~fl~~~~sKrke~T----fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRKEET----FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccchhh----hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 45555555554322221 24888999988832 245567788888888764 22222233344444555
Q ss_pred HHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhC
Q 009679 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (529)
Q Consensus 204 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 283 (529)
++..+ ++...-++..+|..++.+..+- +.......+......++.+++-.|+..|.-++..+..+. .....+...
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence 55555 5555667888999999885442 333344566677778888888899999999998887654 233334433
Q ss_pred c---HHHHHHhcCCCCcchHHHHHHH-HHHhhcCChhhHHHHHh---cCChHHHHHHhccCC-----chhHHHHHHHHHH
Q 009679 284 V---CPRLVELLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNY-----KKSIKKEACWTIS 351 (529)
Q Consensus 284 ~---~~~L~~lL~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~ 351 (529)
+ ++.|+.+-..-+-++...+... ++..+..-......+.. ...+.....++..+. ..+-+..|...|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 3 3334444333233333333222 22222211111111111 122223333332220 1122344555555
Q ss_pred HHhc------CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH
Q 009679 352 NITA------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425 (529)
Q Consensus 352 nl~~------~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 425 (529)
.+.. ..+...+.+.. ...|.+-=++.+.-.++-.+|+..+-+++... .+... +.-|+.+.+.+++.+..+
T Consensus 620 T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~p--imwgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEP--IMWGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhh--hhhHHHHHHHhcccccch
Confidence 4443 34444444433 36666666677777788889999888876532 12222 223678888888888775
Q ss_pred -HHHHHHHHHHHHHHHhhhhh
Q 009679 426 -RIVTVCLEGLENILKAGEAE 445 (529)
Q Consensus 426 -~v~~~~l~aL~~l~~~~~~~ 445 (529)
.-...+..+|.|++.+|.+.
T Consensus 696 ~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhHHHHHHHHHHHHHhCccc
Confidence 66677888999999998543
No 205
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.62 E-value=0.3 Score=44.49 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009679 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 463 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 463 (529)
...|+.+|--++-- .+.....+.+...+..|+++|. ...+.+...++.+|..++-.... ....|++
T Consensus 108 i~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~------------N~r~FE~ 174 (257)
T PF08045_consen 108 IALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE------------NQRDFEE 174 (257)
T ss_pred HHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH------------HHHHHHH
Confidence 34455666555544 4566677788899999999995 46688999999999998877653 3678999
Q ss_pred hchHHHHHHHhcC--CCHHHHHHHHHHHHhhCCCCCC
Q 009679 464 AEGLEKIENLQSH--DNTEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 464 ~g~~~~l~~L~~~--~~~~v~~~a~~il~~~~~~~~~ 498 (529)
.+|+..+-.+..+ -+.+++-+....|--|...|.+
T Consensus 175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 175 LNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred hCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCC
Confidence 9999999999654 5678999999999888886654
No 206
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.59 E-value=0.092 Score=44.50 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=96.0
Q ss_pred CChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009679 325 QALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403 (529)
Q Consensus 325 ~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 403 (529)
..++.++..|.. +..+++|..+.-+++.+.....+. ...-+-+.+-..+..++.+-...+..++..+.-. .++.
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv 77 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREE----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDV 77 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHH
Confidence 345566666654 337789999999998885221121 1221333444445555566777889999988776 4555
Q ss_pred HHHH-HHcCChHHHHhccC--CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCH
Q 009679 404 IKFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNT 479 (529)
Q Consensus 404 ~~~l-~~~~~l~~L~~lL~--~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~ 479 (529)
...+ ...|+++.+..+.. ..+..+...++++|..-+.... -+..+. ..+++.|+.+. .++++
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-------------~r~~I~-~~~~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-------------CRTFIS-KNYVSWLKELYKNSKDD 143 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-------------HHHCCH-HHCHHHHHHHTTTCC-H
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-------------HHHHHH-HHHHHHHHHHHccccch
Confidence 5554 46788999999998 7888888888888875543332 133343 55688899887 56666
Q ss_pred H-HHHHHHHHHHh
Q 009679 480 E-IYEKAVKILET 491 (529)
Q Consensus 480 ~-v~~~a~~il~~ 491 (529)
. ++.+|.-.|-+
T Consensus 144 ~~ir~~A~v~L~K 156 (157)
T PF11701_consen 144 SEIRVLAAVGLCK 156 (157)
T ss_dssp H-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6 78888776654
No 207
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.56 E-value=0.13 Score=43.76 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=88.7
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (529)
.+++.|+.+|+.+.++.+|.+++++|+.|..-+|...+.+.... +.-. -...+......... ..++.... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~-~~~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLP-MMGISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHh-hccCCCch----H
Confidence 36778888998876699999999999999997776555332211 1000 01111112221111 11111112 2
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
...-..++..|+..|++..-..-...++.++.++...-..........++|.++..+++.++..++..++-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346788888885444344444566666666644434446778899999999999777788888877777664
No 208
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.12 Score=51.42 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=100.7
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 009679 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (529)
Q Consensus 121 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 199 (529)
+++.+.+ +-+|+..+..+..--.++. +.|++..|+.. .+..+.++|..|+.+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 5666665555443322221 24667777776 6668899999999999999976653
Q ss_pred ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH
Q 009679 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 279 (529)
Q Consensus 200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~ 279 (529)
.+...+.+|..+.+..++...+.+|.-.|.+... ..++..|-.++.+...-|+..|+-+++-+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4667788887788999999999999988887521 2355666777778888899999999988764333222211
Q ss_pred HHhCcHHHHHHhcCCC
Q 009679 280 IEAGVCPRLVELLRHP 295 (529)
Q Consensus 280 ~~~~~~~~L~~lL~~~ 295 (529)
+. ++...+.+.+.+.
T Consensus 660 v~-~I~k~f~~vI~~K 674 (926)
T COG5116 660 VK-RIIKKFNRVIVDK 674 (926)
T ss_pred HH-HHHHHHHHHHhhh
Confidence 11 4555566665443
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.49 E-value=0.34 Score=51.83 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=132.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009679 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
.+.+..-+.++++.-|..++..+.-+..... ........+.+-.++.....+.+..+...++.+|..++..-......+
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3445555666778888888888888775543 111112223455556666577788888899999998888764455556
Q ss_pred hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh-h
Q 009679 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-Q 317 (529)
Q Consensus 239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~-~ 317 (529)
...++|.++.-+......++..+..++-.++.... -..+.+.+...+.+.++.++..+...+.......+. .
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 67888999999988888887777777666554221 114567888999999999999988888888765541 1
Q ss_pred HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
...---.++++.++....+. +..||..|..+++.+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 11111236788888888888 89999999999988776
No 210
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.49 E-value=0.47 Score=48.73 Aligned_cols=257 Identities=13% Similarity=0.159 Sum_probs=164.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
-.++..+.-.+.+.+..-...|.+.+.. .-+.++...++|.|+..+..++. .++. ..+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e---- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE---- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc----
Confidence 3445555556666665555555554422 23455666678888877766541 2222 222222222221 22
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
+..+++|.|++++..++..+|-.-+.-+-..... ..+..++..+++.+..-+ .++++.++...+.++..|+..-.
T Consensus 327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhc
Confidence 5667899999999999999998777666665543 344566667788888888 78889999998888887775421
Q ss_pred CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCc-HHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
.. ......+..+..+-.+++..++.+..-|++.++.+.... ...++ ...+..-+.++-..-|..++..+....
T Consensus 402 ~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 KR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 11 233456666666666677889999888888888664322 12233 333444566776777887777776655
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
...+. .-+...++|.+..+..++ +..+|..|..++...-.
T Consensus 476 ~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 43332 234457889999888888 88888888877765544
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.41 E-value=1.7 Score=40.37 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=143.5
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh----hHHHHH-hcCChHHHHHHhccCCc-hhHHHHHHHHH
Q 009679 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCII-NHQALPCLLDLLTQNYK-KSIKKEACWTI 350 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~-~~~~l~~L~~lL~~~~~-~~v~~~a~~~L 350 (529)
+.+.++|++..++..+...+.+.+..++.+..++-...-. ....+. +..++..++.. ..+ +++-..+...+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 4577789999999999998888888999998888653221 112221 22333333333 212 44444444445
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC----hHHHHhccCCCCHH
Q 009679 351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPR 426 (529)
Q Consensus 351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~----l~~L~~lL~~~~~~ 426 (529)
..+.+. +.....+..+.-+.....++..+..++...|......+.........++|.. +. .+....++.+++.-
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhccccee
Confidence 555444 5555666778889999999999999999999999999887654444444443 23 44467788899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009679 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 497 (529)
++..++.+++.++....... .....+.+-.-+..+-.|+.+++..++-.|.++...+.-...
T Consensus 228 tkrqs~kllg~llldr~N~~---------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSA---------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHH---------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999999987655433 246666656667788888888888999888888876665443
No 212
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.32 E-value=0.25 Score=54.85 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=107.7
Q ss_pred HHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc
Q 009679 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297 (529)
Q Consensus 218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 297 (529)
..+.|+...++...+ -.....+.+..++..+..+...+|..|+.||+.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 344555555544421 11223567778888888888999999999999999876532 2333444445555667788
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009679 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (529)
Q Consensus 298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 377 (529)
.||..|+..+|..+...++.... ....+..-+.++ ...||+.+...+..+|...|+.-. +.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence 89999999999998877655443 455677777777 788999999999999986554221 111 122222222
Q ss_pred hcCChhHHHHHHHHHHHHhc
Q 009679 378 LNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~ 397 (529)
.+.+..+++-++.++.++-.
T Consensus 941 ~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhc
Confidence 33333466667666666643
No 213
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.28 E-value=2.6 Score=40.80 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=109.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhc-CChhhHHHHHhc-C-ChHHHHHHhccCC----c--------hhHHHHHHHH
Q 009679 285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT 349 (529)
Q Consensus 285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~v~~~a~~~ 349 (529)
++.+...|......+..++++.|..++. ........++.. + -.+.+..++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888988888889999999999999 554555555532 1 1334555553221 1 2788877765
Q ss_pred HHHHh-cCCHHHHHHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC---HHHHHHHHHcCChHHHHhccCCCC
Q 009679 350 ISNIT-AGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NEQIKFLVSQGCIKPLCDLLNCPD 424 (529)
Q Consensus 350 L~nl~-~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~l~~L~~lL~~~~ 424 (529)
+..+. .+++.....++ +.+.+..+..-|..+++++....+.+|..-..... ....-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55544 46777777777 46678889999988888999999999986443221 233334455567888999888777
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 009679 425 P----RIVTVCLEGLENILKA 441 (529)
Q Consensus 425 ~----~v~~~~l~aL~~l~~~ 441 (529)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7888888888887743
No 214
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.25 E-value=1.3 Score=41.08 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=126.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009679 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
|=..|.+++ +.+|..|+.+|..+...-+... ....-+..|+.++.+ .+......++.++..+.....-....
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence 446677887 8999999999999887444221 222335666665544 45555666677777776433211111
Q ss_pred hcCChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCch
Q 009679 197 SNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 197 ~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
...++..+.+... +......+..+...+..+...............+..+++.+.. .||.-...+...+..+...-+-
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 1112233333221 1223455667777777776654222222335666777777764 4888888888777777644331
Q ss_pred hHHHHHHhCcHHHHHHhcC--------C-C-Cc--chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009679 275 KIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (529)
Q Consensus 275 ~~~~~~~~~~~~~L~~lL~--------~-~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 342 (529)
. ...+-+.+.+. . + ++ -.+..--..|.+....++... .-.+|.|+.-|.++ .+.+
T Consensus 158 --~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 --S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred --c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 1 22333333332 1 1 11 233334445555555455333 35789999999998 8889
Q ss_pred HHHHHHHHHHHhc
Q 009679 343 KKEACWTISNITA 355 (529)
Q Consensus 343 ~~~a~~~L~nl~~ 355 (529)
|..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
No 215
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.18 E-value=1.1 Score=43.76 Aligned_cols=275 Identities=19% Similarity=0.173 Sum_probs=137.0
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHH
Q 009679 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRD 193 (529)
Q Consensus 116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~ 193 (529)
+..+++-+.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...+..++ .-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 44556666644446788888888888887 89999999999999999999955 4442444444444 44444443 334
Q ss_pred HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---------cCChHHHHHHHHH
Q 009679 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA 264 (529)
Q Consensus 194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~ 264 (529)
.+........++.++.-........... .... .............+...+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 4444455555566663000000000000 0000 0000000111111111110 0111122333333
Q ss_pred HHHhc--------------cCCchhHHHHHHhCcHHHHHHhcC----CC-------Cc-----chHHHHHHHHHHhhcCC
Q 009679 265 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------SP-----SVLIPALRTVGNIVTGD 314 (529)
Q Consensus 265 L~~l~--------------~~~~~~~~~~~~~~~~~~L~~lL~----~~-------~~-----~v~~~al~~L~~l~~~~ 314 (529)
+-.++ ...+...+.+...|++..++.++. .. .+ .....++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 33331 111122334555678888888874 11 11 13456888888888776
Q ss_pred hhhHHHHHhc--CChHHHHHHh-ccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-------h----
Q 009679 315 DMQTQCIINH--QALPCLLDLL-TQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-------L---- 378 (529)
Q Consensus 315 ~~~~~~~~~~--~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-------~---- 378 (529)
......++.. +.++.+...+ ... ....+...++.++.|++-.+|+.+..+...++...+..+. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6555555532 3333333322 222 0344456788899999988877766655443322211111 1
Q ss_pred ---cCChhHHHHHHHHHHHHhcCC
Q 009679 379 ---NAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 379 ---~~~~~v~~~a~~aL~nl~~~~ 399 (529)
....+...-++.++.|++.+.
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 112345566677777776653
No 216
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.17 E-value=0.39 Score=43.80 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
....|++.|.-++--.+..+..+-....+..++.+|.....+.++..+..+|..+...++.+...+-..+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45667888888887777777777788999999999965447889999999999999988999998889999999999999
Q ss_pred cC--ChhHHHHHHHHHHHHhcC
Q 009679 379 NA--EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 379 ~~--~~~v~~~a~~aL~nl~~~ 398 (529)
+. +.++|-.++..|.-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 86 667887777777766653
No 217
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.17 E-value=2.6 Score=39.22 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=140.0
Q ss_pred HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC---CCchhhh---hchHHHHHHhhccCChHHHHHHHHHHH
Q 009679 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQT---RPALPALERLIHSNDDEVLTDACWALS 266 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~~L~ 266 (529)
..+...|.+..++..+ ...+-+.+..+..+..++.+..- .+...+. ..++..|+..-.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3456778888899888 77778888888888888877652 1222222 2344444444111 3556555555555
Q ss_pred HhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC----hHHHHHHhccCCchhH
Q 009679 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI 342 (529)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v 342 (529)
....+. .....+..+.-+.....++..++-++...|..+...+.+........++..+. .+..-.++.++ +.-.
T Consensus 151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 544443 34456777777888888888888889999999999888876665555554333 34466677777 8889
Q ss_pred HHHHHHHHHHHhcC--CHH-HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 343 KKEACWTISNITAG--NVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 343 ~~~a~~~L~nl~~~--~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
+..+..+++.+..+ +.. ..+++-...-+..++.+|.++...+|-+|-....-+..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999998874 222 2333434456889999999999999999999888887654
No 218
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=2.9 Score=43.22 Aligned_cols=103 Identities=20% Similarity=0.146 Sum_probs=73.9
Q ss_pred hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009679 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (529)
Q Consensus 201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~ 280 (529)
+..+++-. .+.+..++..++..|..+.......+.....++...+..-+.+..+.|+..|+.+|+++-..+.+-
T Consensus 87 f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----- 160 (892)
T KOG2025|consen 87 FYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----- 160 (892)
T ss_pred HHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-----
Confidence 33333333 556788999999999988886555555566777778888888889999999999999997433221
Q ss_pred HhCcHHHHHHhcC-CCCcchHHHHHHHHHH
Q 009679 281 EAGVCPRLVELLR-HPSPSVLIPALRTVGN 309 (529)
Q Consensus 281 ~~~~~~~L~~lL~-~~~~~v~~~al~~L~~ 309 (529)
+..+...+..++. +++++||..|+.+|.+
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1145566777775 4788999998776644
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.05 E-value=0.19 Score=35.96 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009679 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367 (529)
Q Consensus 300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 367 (529)
.+.|++++|++++ ++.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+-+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 5689999999988 4555555667899999999998765788999999999999876 5555444443
No 220
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.76 Score=47.19 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=119.5
Q ss_pred hHHHHHHhhccCChHHHHHHHHHHHHhcc--CCc---hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009679 242 ALPALERLIHSNDDEVLTDACWALSYLSD--GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~--~~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
.=|.|...|+..+..|+.+|+..+.++-- .++ +..+.+++ .-...+..+|.++-+.+|..|..-+..+.+..-.
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999988752 222 22333444 4467789999999999999998877777653222
Q ss_pred hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009679 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
....-+-..++..+..-+......+||......|..++.. |. ...+++. ++|.|-..|.+....||.++...|..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~-sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL-SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc-chhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1111111123333444343333668888888888888875 22 2233333 5677777788888899999888888774
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 397 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
... ...+..---++.++.-|..++..+....+..|.+.+
T Consensus 331 ~vr----a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 331 AVR----AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhh----hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 321 111122122556666677777777666666665554
No 221
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=4.1 Score=42.15 Aligned_cols=236 Identities=13% Similarity=0.095 Sum_probs=137.2
Q ss_pred hchHHHHH-HhhccCChHHHHHHHHHHHHhccCCc--hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-
Q 009679 240 RPALPALE-RLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD- 315 (529)
Q Consensus 240 ~~~l~~L~-~ll~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~- 315 (529)
.++++.+. ..+.-+...+....-..|+++..... ...+.++-.=.=+.|..-|+-.+..|+..|+..+-++---.+
T Consensus 128 ~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp 207 (1005)
T KOG1949|consen 128 NDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDP 207 (1005)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCC
Confidence 45555433 33333334455555555666553321 111111111122445556777899999999999888753222
Q ss_pred ----hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC----CHHHHHHHHhcC-ChhHHH
Q 009679 316 ----MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG----IIGPLVNLLLNA-EFEIKK 386 (529)
Q Consensus 316 ----~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~l~~L~~~l~~~-~~~v~~ 386 (529)
+....+++ +-...+..+|.++ -+.||..|..-++.+... ...++... ++..+++-+..+ ..+||.
T Consensus 208 d~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 208 DLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred CccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence 33444554 3467799999999 899999999888877652 22233222 333444444333 558888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhch
Q 009679 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 466 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 466 (529)
.....|.-++.+. ..-..| + .+++.|-..|.+....|+.+..+.|..|=..- +.+...-.-.
T Consensus 282 svf~gl~~~l~np--~sh~~l-e-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr--------------a~~f~~I~~~ 343 (1005)
T KOG1949|consen 282 SVFKGLPMILDNP--LSHPLL-E-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR--------------AAKFWKICPM 343 (1005)
T ss_pred hHhcCcHHHHcCc--cchhHH-H-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh--------------hhhhhccccH
Confidence 8888888887742 222222 1 24667777778888899988888777653221 1222222222
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009679 467 LEKIENLQSHDNTEIYEKAVKILETYWVEEDED 499 (529)
Q Consensus 467 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 499 (529)
-..|..|..++-+--+..+.-|+.-||+...++
T Consensus 344 d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e 376 (1005)
T KOG1949|consen 344 DHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE 376 (1005)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence 344555555555555677788888898876643
No 222
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.11 Score=47.88 Aligned_cols=142 Identities=12% Similarity=0.202 Sum_probs=98.3
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009679 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 363 (529)
.+...+..|.+.++.....++..|..++....+.....++ .++-.+++-+++. ...|-+.||.+++.+...-...+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788889999999999999998876654444443 4566677777777 7889999999999998753444433
Q ss_pred HHHcCCHHHHHHHHhc---CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 364 IIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 364 l~~~~~l~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
..+ ..+..++.. ++.-|+..|-.+|..+..+..+.- ++..|+..+...++.++..+.-++.+..
T Consensus 167 ~ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ELD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 222 122233332 245689999999999998766543 4667777788888888777666555544
No 223
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.84 E-value=4.1 Score=39.41 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=117.5
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-HHHHHHHHhcC-----C--------hhHHHHHHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW 390 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~~l~~~-----~--------~~v~~~a~~ 390 (529)
+..+...|... ...+...+...|..++. .+......+... ++ .+.+-.++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 78888999888 77888899999999998 666666666642 22 44555555321 1 289999999
Q ss_pred HHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009679 391 AISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 469 (529)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 469 (529)
.+..+...+++.....++.. +.+..+..-+..++++++..++.+|..-+-.+...... .-...|. ...+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn-~~~L~~ 208 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFN-EWTLSQ 208 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcC-HHHHHH
Confidence 99999988888777776654 66888888888888899999999999655444332211 1144444 446888
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHhhCCC
Q 009679 470 IENLQSHDNT----EIYEKAVKILETYWVE 495 (529)
Q Consensus 470 l~~L~~~~~~----~v~~~a~~il~~~~~~ 495 (529)
|..|-...++ .+.+.+...+..++..
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 8888887777 8999999999998863
No 224
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.84 E-value=0.16 Score=51.74 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=101.1
Q ss_pred cHHHHHHhcCC----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCH
Q 009679 284 VCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNV 358 (529)
Q Consensus 284 ~~~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~ 358 (529)
+-|.+.+...+ .++.++..|.-+|..+..-+...+. .-+|.++..+. ++ +|.+|..|+..++.++....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p-~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHP-IPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCC-Ccceeccceeeccccceehh
Confidence 33444444433 5778888888888887664444332 45788999887 56 99999999999998876422
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l 438 (529)
..+.. .-..|.+-|.+.+..||+.+..++.++...+- +.-.|-+..+..+|.++|..+...|--.+..+
T Consensus 967 ~~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 22211 34567777888899999999999999987642 12357788888999999988887776666665
Q ss_pred HHhh
Q 009679 439 LKAG 442 (529)
Q Consensus 439 ~~~~ 442 (529)
...+
T Consensus 1036 a~Kd 1039 (1128)
T COG5098 1036 AKKD 1039 (1128)
T ss_pred Hhcc
Confidence 5443
No 225
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=6.9 Score=41.22 Aligned_cols=312 Identities=11% Similarity=0.092 Sum_probs=157.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hH
Q 009679 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CR 192 (529)
Q Consensus 117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~ 192 (529)
..++++|++.++..++..+++.+.-+..+-.-..+.+.. ......+.+++.. ...+.+...+.+++.+.....+ .+
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 456677777754667888888887777632222222221 2344455555554 4556677777777777643221 11
Q ss_pred HHHHhcCChHHHHHHh----ccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC---hHHHHHHHHH
Q 009679 193 DLVLSNGALMPLLAQF----NEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDACWA 264 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l----~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~ 264 (529)
.. ...+++.+ ..+ ..+-++...+.+|.++...-.........-++|.+-....-+. .-..++++..
T Consensus 609 P~------~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 609 PY------ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred HH------HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence 11 12222222 122 3444566666788888765433333333333343333332222 2245555554
Q ss_pred HHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHHhccCCchhHH
Q 009679 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (529)
Q Consensus 265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 343 (529)
......+.......+. +++|.++.++....+. ...++.++....- .+.... .-...|+...+..++.+- ..+-.
T Consensus 683 W~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl 757 (978)
T KOG1993|consen 683 WLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGL 757 (978)
T ss_pred HHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHH
Confidence 4444444332222232 5667777776554332 2333444433222 122111 112336677777777654 44445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHH---
Q 009679 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLC--- 417 (529)
Q Consensus 344 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~--- 417 (529)
...+.++..+...++ ........++++.+..-+-. +.|.+-..-+.+++.++.. +++....+++. .-.+.++
T Consensus 758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHHHhhhhHHHHHHHH
Confidence 555666666666544 45555667788888776543 3667778888888888776 33443333322 2122222
Q ss_pred -----hccC-CCCHHHHHHHHHHHHHHHHh
Q 009679 418 -----DLLN-CPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 418 -----~lL~-~~~~~v~~~~l~aL~~l~~~ 441 (529)
.+.. -.+++-++.-+-|+..++..
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t 865 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRT 865 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence 1111 24556555555566666644
No 226
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.53 E-value=4.7 Score=47.53 Aligned_cols=265 Identities=9% Similarity=0.089 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHH
Q 009679 168 SPTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (529)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 244 (529)
+++..++..|+..|..++.. ..+....-....++.++..++....+.+++..++.++.++...... .+..+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 34567777777777777631 1111111223456788888887777889999999999988775421 2223444
Q ss_pred HHHHhh----ccCChHHHHHHHHHHHHhccCCchhHHHHHH--h----CcHHHHHHhcCCC-CcchHHHHHHHHHHhhcC
Q 009679 245 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIE--A----GVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 245 ~L~~ll----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~----~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~ 313 (529)
.+..++ ...++.+...+..++..+....- ..+.. . .++..+..+.... +..+-..|+..|.+++..
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 444444 35567788888888777664311 11110 1 3444455554433 355666677777655210
Q ss_pred C----h-----------------------hhH-----HHHHhcCChHHHHHH---hccCCchhHHHHHHHHHHHHhc--C
Q 009679 314 D----D-----------------------MQT-----QCIINHQALPCLLDL---LTQNYKKSIKKEACWTISNITA--G 356 (529)
Q Consensus 314 ~----~-----------------------~~~-----~~~~~~~~l~~L~~l---L~~~~~~~v~~~a~~~L~nl~~--~ 356 (529)
- - ... ........+|.|..+ ..++ +.+||..|+.+|-.+.. |
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence 0 0 000 000011234444433 4555 89999999999887775 1
Q ss_pred ---CHHHHHHHHHcCCHHHHHHHHhcC------------------C-h----hHHHHHHHHHHHHhcCCCHHHHHHH--H
Q 009679 357 ---NVNQIQAIIEAGIIGPLVNLLLNA------------------E-F----EIKKEAAWAISNATSGGSNEQIKFL--V 408 (529)
Q Consensus 357 ---~~~~~~~l~~~~~l~~L~~~l~~~------------------~-~----~v~~~a~~aL~nl~~~~~~~~~~~l--~ 408 (529)
+++....++. +++-.+++.+... + . .+...+..+|.+++.--. .+...| .
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~ 1457 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPL 1457 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445555555 3555555555321 0 0 122333333433332100 122221 1
Q ss_pred HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 409 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 409 ~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
-.+++..|..++..++..+......+|.+++..+
T Consensus 1458 L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1458 LKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 1345666777777788888888899999997654
No 227
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.38 E-value=1.8 Score=42.38 Aligned_cols=242 Identities=17% Similarity=0.165 Sum_probs=124.6
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCch
Q 009679 159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLF 236 (529)
Q Consensus 159 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~ 236 (529)
+..++.-+.+ .+..+|..++--|+.-+.+ +.++..+..+|....+++.+....+..+...++.++. -++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 5578898888888888875 4589999999999999999955544434444444444 44444333333
Q ss_pred hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC---------CCCcchHHHHHHH
Q 009679 237 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRT 306 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~---------~~~~~v~~~al~~ 306 (529)
......+..++.++... ..++..... . ..........+ ..+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455566666666611 000000000 0 00000011111 11222222221 1233456667777
Q ss_pred HHHhhcC--------------ChhhHHHHHhcCChHHHHHHhcc----CC------c-----hhHHHHHHHHHHHHhcCC
Q 009679 307 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY------K-----KSIKKEACWTISNITAGN 357 (529)
Q Consensus 307 L~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~ 357 (529)
+-.++.. .+.....+...|+++.++.++.. .. . ...-..+..+|=|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 7777411 11223334456778888888752 10 1 112234566676777655
Q ss_pred HHHHHHHHH--cCCHHHHHHH----HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009679 358 VNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410 (529)
Q Consensus 358 ~~~~~~l~~--~~~l~~L~~~----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (529)
.++..+++. .+.++.+... .......+...++..+.|++.+. +..+..+...
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~ 311 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASP 311 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhh
Confidence 555555543 2333333332 22223445677888999998763 3444444433
No 228
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.37 E-value=4 Score=37.25 Aligned_cols=204 Identities=18% Similarity=0.105 Sum_probs=114.5
Q ss_pred HHHHH-hhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009679 244 PALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 244 ~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
|.++. +-+..++......+.+|..++.+...... -++..+..+...+.......+.+.+..+-..++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 44443 44567899999999999999977621212 334556666666666666677778877777655332
Q ss_pred hcCChHHHHHH-----h----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHH
Q 009679 323 NHQALPCLLDL-----L----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI 392 (529)
Q Consensus 323 ~~~~l~~L~~l-----L----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL 392 (529)
+.+..++.. . ......+.....+..+..+|...|+.. ..+++.+..++ ...++.++..++.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 122222222 1 111134455555677888888766622 23677788888 677888899999999
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHH
Q 009679 393 SNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 471 (529)
Q Consensus 393 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~ 471 (529)
..++...-.+... ....+..-+.. ..|.+... +--+..++..+.... +.|.... ...+..+.
T Consensus 147 ~~Lc~~~vvd~~s------~w~vl~~~l~~~~rp~v~~~-l~~l~~l~~~~~~~~--------e~~~~~~--~~~l~~lW 209 (234)
T PF12530_consen 147 APLCEAEVVDFYS------AWKVLQKKLSLDYRPLVLKS-LCSLFALVPQGAVDS--------EEYEELK--RQILQLLW 209 (234)
T ss_pred HHHHHHhhccHHH------HHHHHHHhcCCccchHHHHH-HHHHHHHhccccCCh--------hhhhHHH--HHHHHHHH
Confidence 9998532222222 23334443433 33444443 333333443333222 1233322 34577777
Q ss_pred HHhcCCCHH
Q 009679 472 NLQSHDNTE 480 (529)
Q Consensus 472 ~L~~~~~~~ 480 (529)
++..+.+.+
T Consensus 210 ~~~~~~~~~ 218 (234)
T PF12530_consen 210 EYTSSSDVN 218 (234)
T ss_pred hhccccccc
Confidence 776666643
No 229
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.36 E-value=10 Score=43.16 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=56.3
Q ss_pred cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009679 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
.+++|.|..-|.+. +..+|..|...++.+......+.. =-........+.-+.+.+++||.+++....++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 37899999999888 899999999999999886333322 00123566666677778999999999999998876
No 230
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.27 E-value=5 Score=39.60 Aligned_cols=189 Identities=12% Similarity=0.085 Sum_probs=112.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh--hhHHhhcCChHHHHHhhcCCC----ChH--HHHHHHHHHHHHhcC
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FPQ--LQFEAAWALTNIASG 145 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~~i~~g~i~~Li~lL~~~~----~~~--v~~~a~~~L~~l~~~ 145 (529)
.++...+...+.+.|+.|+....++..+.+... .+.+.+.-+.+.+-++|.+.+ .|+ .+.-++.+|..++.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 345556667777889999999999887654322 344667777888888886543 233 35556667777776
Q ss_pred ChhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-cc--hh
Q 009679 146 TSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH--AK 213 (529)
Q Consensus 146 ~~~~~--~~~~~~g~i~~L~~lL~~-~~~------~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-~~--~~ 213 (529)
.|+.. ..++ +.||.|..+++. .++ .+.+.+-.+|..+++..+. ...++..|.++.+.++-. .+ .+
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence 44432 2233 468999999876 233 3788899999999988664 566778899998886642 11 12
Q ss_pred HHHHHHHHHHHhhhhcC-C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009679 214 LSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~ 269 (529)
..+. +..+.-+... . -.........++..+..-+...+.......|..|..+.
T Consensus 170 ~ala---l~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 170 MALA---LKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHH---HHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2221 1111111111 1 01111111223444444444556777788888887443
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.20 E-value=4.3 Score=37.01 Aligned_cols=202 Identities=19% Similarity=0.174 Sum_probs=116.9
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009679 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (529)
Q Consensus 116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (529)
+|.|+.-+....++..+...+..|..++........ -++..|..+...+..+.+..+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555444444489999999999999984422222 234666667777777776777788887775554321
Q ss_pred HhcCChHHHHHHh---------ccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHH
Q 009679 196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (529)
Q Consensus 196 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L 265 (529)
+.+..++..+ ..+...+.......++..+|...|. ....+++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444431 1222445555666788888888765 4467788888888 788888999999999
Q ss_pred HHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHhccC
Q 009679 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQN 337 (529)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~ 337 (529)
..++...--... .....+..-++.+ .+.+....+..++.+..+.- ..........++..+..+..+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999944211111 2223333444333 33344333333333332211 1111123445666666666655
No 232
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.16 E-value=4.5 Score=45.77 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=93.4
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009679 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (529)
+++|.|-.-|.+++..+|..|...+|.+......+.. --....+...+.-+.+. +..||.+++....++...+++...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889898889999999999999999999885543322 00123445555556666 889999999999988887666443
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 363 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 363 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
... ....+.... .|++++.....++..+.. ......+... ++..+.+-+.+..+.|+..|...|..+.+.
T Consensus 337 ~~~---~~~~l~~~~--~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRERD--LDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHhhc--CChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222 222222222 344444333222222211 0121222223 566667777788999999999999988874
No 233
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.05 E-value=0.48 Score=40.24 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009679 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (529)
Q Consensus 325 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (529)
.+++.|+.+|+.+.++.+|.++..++|.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 46778888898877899999999999999986555443
No 234
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=0.57 Score=43.28 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=102.5
Q ss_pred chHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHH
Q 009679 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC 320 (529)
Q Consensus 241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~ 320 (529)
..+...+..|.+.|.+...+.+..|..|+....+.....+. .++..++.-+.+....|...|+.+++.+.+.-......
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788889999999999999998776554444443 56667777788888889999999999998865544433
Q ss_pred HHhcCChHHHHH-HhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 321 IINHQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 321 ~~~~~~l~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
-++.++. ++... .+.-|+..|-.+|..+..+-..+ .+++.|+..+.+..+.++..++.+..++..
T Consensus 167 -----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 -----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred -----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 2333333 33221 14557888888988887742222 267788888888889999998888877765
Q ss_pred C
Q 009679 398 G 398 (529)
Q Consensus 398 ~ 398 (529)
.
T Consensus 235 r 235 (334)
T KOG2933|consen 235 R 235 (334)
T ss_pred e
Confidence 4
No 235
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.98 E-value=0.74 Score=45.92 Aligned_cols=260 Identities=13% Similarity=0.140 Sum_probs=143.5
Q ss_pred HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009679 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P 169 (529)
Q Consensus 91 a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~ 169 (529)
.-..|..++......+.+..++..++..|+.++.+++ +.-|.....+|.++-......+..+. ..+...|.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcc
Confidence 3444555554332222555677788999999999999 99999999999998875566665554 3445667777764 4
Q ss_pred CHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHH
Q 009679 170 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248 (529)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 248 (529)
...-...++.+++.+..+-. ..++.-.. -....++.+.....-.........++..++..+|.. ...++..+++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence 44555667888888875421 12221100 011223333322222333445555666555543221 1233334444
Q ss_pred hhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh---c
Q 009679 249 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---H 324 (529)
Q Consensus 249 ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~ 324 (529)
.=-..+..-....+.-+..+...-+ .... -+...++..+..++.+++..|...|+..+.| +.... ++. .
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChH
Confidence 3334455544555555555554332 2222 2223567788888899998898888876643 22222 222 1
Q ss_pred CChHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009679 325 QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAI 364 (529)
Q Consensus 325 ~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (529)
.++|.+...|... =+..++..|..++.-+..-++.....+
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3566666666431 156799999999999988777755443
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.80 E-value=1.5 Score=45.35 Aligned_cols=208 Identities=15% Similarity=0.141 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009679 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (529)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 294 (529)
.-+..-...|..+.-.- +.......++|.|+..+.+ ....-..+-.+..++...+ +......+++.|..+++.
T Consensus 288 ~qKs~Flk~Ls~~ip~f--p~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~ 360 (700)
T KOG2137|consen 288 SQKSSFLKGLSKLIPTF--PARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSA 360 (700)
T ss_pred HHHHHHHHHHHHhhccC--CHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhcc
Confidence 33444444555555442 3334456788888877732 3333333444444544433 223344677888888774
Q ss_pred C-CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 009679 295 P-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 373 (529)
Q Consensus 295 ~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 373 (529)
. ...+....+.-+.-|....+ ..-+...++|.|...+++. +..++..++..+..++..-+ -..+..-++|.+
T Consensus 361 ~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l 433 (700)
T KOG2137|consen 361 SDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRL 433 (700)
T ss_pred CCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHh
Confidence 2 22222222222222222211 1223447889999999988 99999999999998876422 123455578888
Q ss_pred HHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009679 374 VNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 374 ~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~ 441 (529)
..+.. ..+..++..++.|+..++...+ .... -..+..+....+..|+.++..++.+..++.-.
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRLD--KAAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHHH--HHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 87733 3478899999999999984321 1111 12355666677788999988888887777543
No 237
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.73 E-value=1.2 Score=47.41 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred hHHHHHHhhcc----CChHHHHHHHHHHHHhccCCchh---------HHHHHHhCcHHHHHHhcC----CCCcchHHHHH
Q 009679 242 ALPALERLIHS----NDDEVLTDACWALSYLSDGTNDK---------IQAVIEAGVCPRLVELLR----HPSPSVLIPAL 304 (529)
Q Consensus 242 ~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~~~~L~~lL~----~~~~~v~~~al 304 (529)
.+..+..++.. .++.+...++-+++.+....-.. ....+...+++.+...+. ..+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34444445542 45667777777777665321000 011112245555655554 45567788899
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--
Q 009679 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-- 380 (529)
Q Consensus 305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-- 380 (529)
++|||+.. + ..++.+...+... .+..+|..|+|++..++...++. +.+.++.++.+.
T Consensus 512 kaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 512 KALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS
T ss_pred HHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCC
Confidence 99999964 2 2455566655443 26789999999999998776654 345666776664
Q ss_pred ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHH
Q 009679 381 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGL 435 (529)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL 435 (529)
++++|..|..+|...- .+.. .+..+...+. .++.+|...+...|
T Consensus 573 ~~EvRiaA~~~lm~~~--P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 573 DPEVRIAAYLILMRCN--PSPS---------VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -HHHHHHHHHHHHHT-----HH---------HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhcC--CCHH---------HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7789999988877741 1222 2444555554 45566666555443
No 238
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.54 E-value=1.8 Score=37.39 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhhcCChhh-----HHHHH-h-----cCChH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009679 299 VLIPALRTVGNIVTGDDMQ-----TQCII-N-----HQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~-----~~~~~-~-----~~~l~-~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 366 (529)
+|..|+.+|..++...+.. -..++ + .+.-+ .+--++.++ ++++|..|+.+++.+..++.......-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 6778888888888762211 01111 1 12333 344455666 9999999999999999875544332221
Q ss_pred cC-------------------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009679 367 AG-------------------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 367 ~~-------------------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
.+ +-..|+..|..+ +..+....+.++..+......+..+.=.-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 233455566654 6678888999999998765433322111112355566667789999
Q ss_pred HHHHHHHHHHHHHHhh
Q 009679 427 IVTVCLEGLENILKAG 442 (529)
Q Consensus 427 v~~~~l~aL~~l~~~~ 442 (529)
++..++.+++.++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887654
No 239
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.48 E-value=5.9 Score=38.82 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc----c-CCchhHHHHHHHHHHH
Q 009679 279 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN 352 (529)
Q Consensus 279 ~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~~v~~~a~~~L~n 352 (529)
+.+..-.+.+-.-+.. +...-+..|+..+..++.........++. ..+-.++. + ..++.-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 4444545555555543 33566788899999998754444333322 23333443 1 2267778889999999
Q ss_pred HhcCCHH------------HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 353 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 353 l~~~~~~------------~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
++..... .+..+....++|.|. --.+..+-++..|++.+..+-..-+++.... +++.++.+|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9873211 244555666778776 2223467799999999999988766554433 688999999
Q ss_pred CCCCHHHHHHHHHHH
Q 009679 421 NCPDPRIVTVCLEGL 435 (529)
Q Consensus 421 ~~~~~~v~~~~l~aL 435 (529)
.+++.-|...+..++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999988887776654
No 240
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.47 E-value=4.1 Score=40.65 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=129.7
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
.++...+..|+.++.++++.=|+....+|.++.+.-...|..+.. .+...+.+.+...........++..++.+..+..
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 344556788999999999999999999999987655545555433 3445566666445555666777888888887753
Q ss_pred CCc-hhhhhchHHHHHHhhccCC-hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009679 233 QPL-FEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (529)
Q Consensus 233 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l 310 (529)
.+. .....-....++.+...+. .........++..+...++.....++ ..++..=-..+..-...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence 232 2333334455566665553 22344555555555554444333222 2223322223333344455666666
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHhc----C-Ch
Q 009679 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLN----A-EF 382 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~----~-~~ 382 (529)
....+...-.-+...++..+...+.++ ...|.+.|+..+.| +....++.. .++|.+...+.. . +.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 664332221222335677888888888 88888888765432 111222221 156666666543 2 66
Q ss_pred hHHHHHHHHHHHHhcC
Q 009679 383 EIKKEAAWAISNATSG 398 (529)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (529)
.|+..|..++.-+...
T Consensus 356 ~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 356 TVRNLAQNVLKILMEM 371 (409)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888888888777664
No 241
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.45 E-value=8.6 Score=37.90 Aligned_cols=266 Identities=11% Similarity=0.051 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHH
Q 009679 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNG---ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245 (529)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 245 (529)
+.++..+|+.+++.+..+.. ....+-... ++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67899999999999875543 222211111 2344444442 334566777777877742222111111122223333
Q ss_pred HHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc--CCh-hhH---
Q 009679 246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT--GDD-MQT--- 318 (529)
Q Consensus 246 L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~--~~~-~~~--- 318 (529)
+..+-. -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+.. +.. ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333322 346678888999999988765533221111 367788887777777777776555544432 111 111
Q ss_pred HHHHhcC---------ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009679 319 QCIINHQ---------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (529)
Q Consensus 319 ~~~~~~~---------~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 388 (529)
...++.. +.+.+..++.+. +...-.--+|...-+.-+++. .....++ ..+...-.++.++++.+|.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHHH
Confidence 1112222 233366666663 223333334544433333221 1111222 245555567778899999999
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCC-CH----HHHHHHHHHHHHHHH
Q 009679 389 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCP-DP----RIVTVCLEGLENILK 440 (529)
Q Consensus 389 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-~~----~v~~~~l~aL~~l~~ 440 (529)
..+-..++... +.........- +..++...++.. .. .+...++..+.+++-
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 98888776522 11111111111 233444444432 22 567777777777763
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.34 E-value=3 Score=43.33 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=107.7
Q ss_pred hhhchHHHHHHhhccCC-hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009679 238 QTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
+...++|.|...++..+ .++..-.+.-+.-|...-+ ..-+...+++.|...+.+.+..++..++..+..++..-+.
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~ 422 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV 422 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence 34566777777776432 2222222222222221111 1123347888888889999999999999999999875552
Q ss_pred hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009679 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (529)
Q Consensus 317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (529)
..+..-++|.|..+.....+..++..++-+++-++.. -+ ...+++ .+..+.......++.+......+..++.
T Consensus 423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD-~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LD-KAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HH-HHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3456678898888765554788899999999888721 11 111222 4555666666778888888777777776
Q ss_pred cCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009679 397 SGGSNEQIKFLVSQGCIKPLCDLLNCPD 424 (529)
Q Consensus 397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 424 (529)
..... . ..++...+++.++-+...+.
T Consensus 496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYS-G-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence 54221 1 23344567777777665443
No 243
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.33 E-value=0.99 Score=45.39 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=78.9
Q ss_pred HHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHH
Q 009679 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (529)
Q Consensus 265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 344 (529)
+.+....+++... +++ |++..++..+.+++..|+..++.+|+.++..-.+ ....+-.+++..|..-+-+. .+.||.
T Consensus 75 ~~Y~~~~dpeg~~-~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~ 150 (885)
T COG5218 75 FEYDMPDDPEGEE-LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRR 150 (885)
T ss_pred HHhcCCCChhhhH-HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 3334444443322 443 7888888889999999999999999998864333 23344447777777777777 788999
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHH
Q 009679 345 EACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAW 390 (529)
Q Consensus 345 ~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~ 390 (529)
+|+.+|+.+-. ++++.. +...|..+++.+ +.+||..|..
T Consensus 151 eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 151 EAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 99999998875 344432 344566666654 6688887654
No 244
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.30 E-value=3.7 Score=43.30 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=94.9
Q ss_pred chHHHHHHhhccC----ChHHHHHHHHHHHHhcc----CCchhHHHHHHhCcHHHHHHhcC----CCCcchHHHHHHHHH
Q 009679 241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIPALRTVG 308 (529)
Q Consensus 241 ~~l~~L~~ll~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~lL~----~~~~~v~~~al~~L~ 308 (529)
..+..+..++.++ .+.+...++-+++.+.. ..+..-..++ ..+++.+...|. ..+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455666666543 45677777777776653 2211101111 245555555543 345556778999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhH
Q 009679 309 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI 384 (529)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v 384 (529)
|+.... .++.+...+. ...+..+|..|+|+|..++...+.. +-+.++.++.+. ++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 987622 2344444443 1225689999999999998654553 345566666653 7899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHH
Q 009679 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG 434 (529)
Q Consensus 385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~a 434 (529)
|..|+.+|...- .+... +..+...+. .++.+|...+...
T Consensus 533 RiaA~~~lm~t~--P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 533 RMAAVLVLMETK--PSVAL---------LQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHHHHHhcC--CCHHH---------HHHHHHHHhhcCcHHHHHHhHHh
Confidence 999998887752 12222 334444444 4556666555443
No 245
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.27 E-value=3.6 Score=36.00 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=93.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
-++.+++...+++..++..|+..+..++..+=-.|. ..+|.|+.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 367888888899999999999999998876522333 36899999999988 99999999999999886555444
Q ss_pred HHHhCCChHHHHHhh---CCCCH-HH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-------hHHHH
Q 009679 152 VVIDHGAVPIFVRLL---SSPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML 217 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL---~~~~~-~v---~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~ 217 (529)
.-...| +..-..+- ..... .. ....+..+..+...+...|..+ +..+++.+.... ...-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 333333 22222221 11111 11 4455666677776665555554 556666663221 33445
Q ss_pred HHHHHHHhhhhcCC
Q 009679 218 RNATWTLSNFCRGK 231 (529)
Q Consensus 218 ~~a~~~L~~l~~~~ 231 (529)
....++..||+.-+
T Consensus 156 ~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 156 DFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHhcCC
Confidence 55566666666553
No 246
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.21 E-value=7.1 Score=36.23 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=126.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC--CCChHHHHHHHHHHHHHhcCC---hhhH
Q 009679 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGT---SENT 150 (529)
Q Consensus 76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~--~~~~~v~~~a~~~L~~l~~~~---~~~~ 150 (529)
+=..|.++|+..|..|+..|..++..-.... ....-+..|++++.+ .+ ......++..+..+.... ++..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3346789999999999999999987542111 112223444444322 22 334444466666666421 1111
Q ss_pred HHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 151 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
. .++..+.+-.. +-....|..+...+..+.... +..+. ..+++..++..+....||...-.++..+..
T Consensus 79 ~-----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 79 V-----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKV 150 (262)
T ss_pred H-----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 1 12233333222 234667888888888887543 22222 234677888888777799988888888888
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhc-----c-CCh-H-HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009679 227 FCRGKPQPLFEQTRPALPALERLIH-----S-NDD-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~-----~-~d~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 298 (529)
+....+. ......+...+....- . +|+ . .+.+.-.+|.......+. ...-.+|.|++-|.++.+.
T Consensus 151 i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 151 ILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPS 223 (262)
T ss_pred HHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcH
Confidence 7776542 2222333333332221 1 122 1 233444444443333222 2236789999999999999
Q ss_pred hHHHHHHHHHHhhcCCh
Q 009679 299 VLIPALRTVGNIVTGDD 315 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~ 315 (529)
++..++.+|..++...+
T Consensus 224 ~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999988876443
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.19 E-value=0.46 Score=35.89 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009679 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (529)
Q Consensus 285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 364 (529)
+...+..+.++.+.+|..++..|..+....+ ....-..+++..+...|+++ ++-|--.|..+++.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence 4566777889999999999999999998766 11122346788888999998 9999999999999999865552
Q ss_pred HHcCCHHHHHHHHhc
Q 009679 365 IEAGIIGPLVNLLLN 379 (529)
Q Consensus 365 ~~~~~l~~L~~~l~~ 379 (529)
+++.|++...+
T Consensus 78 ----vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 ----VLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHhC
Confidence 45666665544
No 248
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.04 E-value=9.4 Score=38.36 Aligned_cols=265 Identities=10% Similarity=0.083 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC----CchhhhhchHH
Q 009679 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQTRPALP 244 (529)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~l~ 244 (529)
+++-+....++++..+-..-......++.. .+..+.....+..++..-.....+++.+.+.... ........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 566666666676666554433333333321 2222222222344777777777777777665322 22245677889
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009679 245 ALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (529)
Q Consensus 245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 323 (529)
.+..+|+.+=.+..-++...++.+.+... ....... ..+++.|+.-.-.....-.-...+.|..+....+... ..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~ 196 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA 196 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence 99999988878888888888888875443 1111000 0233333322111111222344556666655433322 22
Q ss_pred cC----ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhc
Q 009679 324 HQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS 397 (529)
Q Consensus 324 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~ 397 (529)
.+ ++..+-+++.+. . --..+...|..+...-+ +.....+.. ++..++.-|++. .++..+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp -S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 23 334444556554 2 22456777777766423 333333332 555555556543 66666666666666655
Q ss_pred CCCHHHHHHHHH---cCChHHHHhcc------CCCCHHHHHHHHHHHHHHHHhh
Q 009679 398 GGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 398 ~~~~~~~~~l~~---~~~l~~L~~lL------~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
..+++.....++ .|+...+..-+ +-..+.=++.+.-++.+++..+
T Consensus 273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 444454444443 24333333311 1123333555666667766443
No 249
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.98 E-value=1.6 Score=38.23 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=73.0
Q ss_pred cCCCCcchHHHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHHhccC-----CchhHHHHHHHHH
Q 009679 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQN-----YKKSIKKEACWTI 350 (529)
Q Consensus 292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~-----~~~~v~~~a~~~L 350 (529)
+.+++......++..|+|++.... ....+++ ...+..|+..+..+ ....--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344556677788889999987443 3333331 23466677766551 1234456788899
Q ss_pred HHHhcCCHHHHHHHHHc--CC--HHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009679 351 SNITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 351 ~nl~~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
+|++.. ++.++.+++. +. +..|+..+++.+..-|.-++.+|.|++..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 999987 7888888753 34 77888888888777778899999999985
No 250
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=7.5 Score=41.12 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=81.6
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh-CcH-------HHHHHhcCCCCcchHHHHHH
Q 009679 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVC-------PRLVELLRHPSPSVLIPALR 305 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~-------~~L~~lL~~~~~~v~~~al~ 305 (529)
......-.++|.++.+|..+..-|-.+|+.++-.+-...+..-..+... .+. ..|+..++.+...--....+
T Consensus 491 l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK 570 (960)
T KOG1992|consen 491 LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK 570 (960)
T ss_pred CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence 3344556789999999999999999999988887653322211112221 122 22223333332222222333
Q ss_pred HHHHhhcCChhhHHHHHh---cCChHHHHHHhccCCchhHHHHHHHHHH---H-HhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009679 306 TVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWTIS---N-ITAGNVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 306 ~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~~v~~~a~~~L~---n-l~~~~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
++..+..-.+........ .++.+.+...-+.+.++..-......++ + .+..++..+..+. ..++|.+..++.
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILS 649 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHH
Confidence 333333322222211111 1222333334455545544443333333 3 3334455444443 448888888888
Q ss_pred cCChhHHHHHHHHHHHHhcC
Q 009679 379 NAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~ 398 (529)
.+-.+.--.+...++-+...
T Consensus 650 eDI~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEH 669 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 76556666666666666543
No 251
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.86 E-value=1.3 Score=38.80 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHHhccCCchhHHHHHH----------------hCcHHHHHHhcCC------CCcchHHHHHHHHHHh
Q 009679 253 NDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGNI 310 (529)
Q Consensus 253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~~L~~lL~~------~~~~v~~~al~~L~~l 310 (529)
++......++..|+|++..+.... .+++ ...+..|+.++.. ....-......++.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456667778888877654332 1221 2356666666644 2344566788899999
Q ss_pred hcCChhhHHHHHhc--CC--hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHhc
Q 009679 311 VTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN 379 (529)
Q Consensus 311 ~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~~l~~ 379 (529)
+. .+..++.+++. +. +..|+.++.+. +..-|..++.+|.|+|-....+ ..++. .+++|.|+--|..
T Consensus 86 S~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 86 SQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred cC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 87 45566667643 33 67788888887 7777788899999999874444 33432 3566666655553
No 252
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.81 E-value=2.4 Score=45.30 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=119.5
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChH--HHHHHhccchhH
Q 009679 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL 214 (529)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~--~l~~~l~~~~~~ 214 (529)
+|.++...+++....+++.|++..+..++.. ...+++..++..++|++...+. ++.......+. .+-.++.+..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778888889999999999999999999987 6788999999999999865431 22221111121 333344344455
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-
Q 009679 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR- 293 (529)
Q Consensus 215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~- 293 (529)
+....++..|+.+....+.... .+. -+.+......++...... ........-+.+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~---~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTE---CVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcc---ccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence 7778888888887776432100 000 111222222222222211 1121222122221444443
Q ss_pred CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009679 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (529)
Q Consensus 294 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 350 (529)
+..+..+..|++++.+++..++.....+.+.++++.+...-.......++.++...+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 345678889999999999998888888888899888877765543444455544443
No 253
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.62 E-value=5.7 Score=42.36 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=109.3
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPK 190 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~ 190 (529)
.+..+.+++.... ---..|++.|..+.......... .+..+..++.+ .+..++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4556667776654 11233555555555422122222 34556666665 4677889999888888631110
Q ss_pred ---------hHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC---Ch
Q 009679 191 ---------CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 255 (529)
Q Consensus 191 ---------~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~ 255 (529)
..........++.+...+. ...+..-+..++.+|.|+-. ...++.+...+... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 0111222345666777764 22345677788899998853 35778888887765 67
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009679 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (529)
Q Consensus 256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 333 (529)
.++..|++++..++...++.+ .+.++.++.+ .+.++|..|+.+|-.. ++.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 899999999998877655433 3566777655 3566888887666442 2211 235567777
Q ss_pred hccCCchhHHHHH
Q 009679 334 LTQNYKKSIKKEA 346 (529)
Q Consensus 334 L~~~~~~~v~~~a 346 (529)
+..+.+.+|....
T Consensus 601 l~~E~~~QV~sfv 613 (618)
T PF01347_consen 601 LWNEPSNQVASFV 613 (618)
T ss_dssp HTT-S-HHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 7665456555443
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.47 E-value=4 Score=35.32 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcC-Chh----hHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009679 131 LQFEAAWALTNIASG-TSE----NTRVVID------HGAV-PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (529)
Q Consensus 131 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i-~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (529)
+|..|+.+|..++.. ++. ....++- .+.- +.+.-++.++++.+|..|+.++..+......+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577788888887774 211 1111221 1123 344445677899999999999999976543221111111
Q ss_pred C-------------------ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch--hhhhchHHHHHHhhccCChHH
Q 009679 199 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV 257 (529)
Q Consensus 199 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~ll~~~d~~v 257 (529)
. .-..|+..|....+..+...++.++..|....|.... .....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1223444554556778888999999999988755443 345666677777888999999
Q ss_pred HHHHHHHHHHhccCC
Q 009679 258 LTDACWALSYLSDGT 272 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~ 272 (529)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887543
No 255
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.43 E-value=19 Score=39.11 Aligned_cols=127 Identities=15% Similarity=0.229 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
++..+.-+|+++|-..+.... ..+|.+++-|.......+|...+.+++.+|..... +++ ..+|.+-..|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MTD-RYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HHH-HhhHHHHHHhc
Confidence 344455556666554443322 34566666665543555666666666666543111 222 36788888888
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC--hHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 379 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC--IKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++++-||+.+...|.++...+ ..+. .|. +..+..++ +.+++++.-+--.+..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~---~vKw---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG---IVKW---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh---hhhc---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 888899999999999998753 2221 122 33333333 467778877777777777654
No 256
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.19 E-value=18 Score=42.93 Aligned_cols=263 Identities=14% Similarity=0.096 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009679 82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~--~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (529)
+.+..+...|+..|+++...- ..+....-.+..++..|..++....+.+++...+.|+.+|..... .-+..| -
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 446778888888888865421 011011112335677777777665558999999999999986322 223344 4
Q ss_pred HHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCC----hHHHHHHhccchhHHHHHHHHHHHhhh--
Q 009679 160 PIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGA----LMPLLAQFNEHAKLSMLRNATWTLSNF-- 227 (529)
Q Consensus 160 ~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~----i~~l~~~l~~~~~~~~~~~a~~~L~~l-- 227 (529)
+.++.++. ..++.+...|..++..|+.+.- ..+.. .+. +..+..+.....+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 44555544 4678888999998888764421 11110 122 333333332222333333333333322
Q ss_pred --hcCC----------C-------------C------Cch---hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009679 228 --CRGK----------P-------------Q------PLF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 228 --~~~~----------~-------------~------~~~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~ 273 (529)
+.+. . . ... ...-.++..|..+..+.+++||..|+.+|..+.....
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 0 000 1112233344455567789999999999988764322
Q ss_pred -----hhHHHHHHhCcHHHHHHhcCCC-------------------C-------cchHHHHHHHHHHhhcCChhhHHHHH
Q 009679 274 -----DKIQAVIEAGVCPRLVELLRHP-------------------S-------PSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 274 -----~~~~~~~~~~~~~~L~~lL~~~-------------------~-------~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
+.-..++. +++-+++..+++. + ......|++.+..+....-.....++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333 4555555444310 0 01222344444444432222222222
Q ss_pred hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 323 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
+ +++..|..++..+ +..+-+.++.+|.++..
T Consensus 1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 2 5566666666777 77888888888888776
No 257
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.14 E-value=0.51 Score=39.15 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=59.9
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009679 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 490 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~ 490 (529)
++..|..-|.+.++.++..++..|..+++.+.. .|...+...+.++.|..+... .+++|+.+...+|.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-----------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-----------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-----------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 455666667789999999999999999877643 367777778889999988766 88999999999999
Q ss_pred hhCCCCC
Q 009679 491 TYWVEED 497 (529)
Q Consensus 491 ~~~~~~~ 497 (529)
.+-....
T Consensus 107 ~W~~~f~ 113 (144)
T cd03568 107 QWADEFK 113 (144)
T ss_pred HHHHHhC
Confidence 8854433
No 258
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.11 E-value=14 Score=36.76 Aligned_cols=233 Identities=16% Similarity=0.184 Sum_probs=134.2
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhcc------chhHHHHHHHHHHHhhhhcCC
Q 009679 161 IFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNE------HAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~ 231 (529)
.+..++...+.+-+-.++.....++...+ ..+..+++.-+.+-+-+++.. ..+.-.+..+...|..+|+..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35566666777777778888888874432 234556666566656666632 223344556667788888887
Q ss_pred CCCchhhhhchHHHHHHhhccC-ChH------HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch-HHHH
Q 009679 232 PQPLFEQTRPALPALERLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-LIPA 303 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v-~~~a 303 (529)
.-.....+-.-+|.|...+... |++ +..++..+|..++..... ...++..|.++.+.+.-.-++... ...+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 5555555667889998888733 333 788899999988887554 466888899999998754443322 3334
Q ss_pred HHHHHHhhcCChhh---HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH--HHHHH----HcCCHHHHH
Q 009679 304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAII----EAGIIGPLV 374 (529)
Q Consensus 304 l~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~----~~~~l~~L~ 374 (529)
+.++--.+.+.+.. ...+.. ++..+..=+... +...+-+.|..|+.+....+.. ...+- ...+...+.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~ 250 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVV 250 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHH
Confidence 44443333322211 111111 123333333333 5567889999999766532211 11111 111334455
Q ss_pred HHHhcC-ChhHHHHHHHHHHHHhc
Q 009679 375 NLLLNA-EFEIKKEAAWAISNATS 397 (529)
Q Consensus 375 ~~l~~~-~~~v~~~a~~aL~nl~~ 397 (529)
++|.+. .+.-|.-|+....|+..
T Consensus 251 ~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 251 AILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHhcccCchhcChHHHHHHHHHH
Confidence 666665 44555556666666553
No 259
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.04 E-value=1.1 Score=38.23 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=78.7
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc---CC
Q 009679 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GN 357 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~ 357 (529)
..+.++..+|.++++.-+..++..+...+..++.. .+. -...+..++.+|+.+..+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56677889999999999999999999988865321 222 224677888888887677889999999998875 45
Q ss_pred HHHHHHHHHc---CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009679 358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 358 ~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (529)
++..+.+... ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5555554432 245555555554 46677788888877764
No 260
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=6.7 Score=43.97 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=89.9
Q ss_pred CcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHH----hcCChHHHHHHhccCCchhHHHHHHHHHH--HHhc
Q 009679 283 GVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITA 355 (529)
Q Consensus 283 ~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~----~~~~l~~L~~lL~~~~~~~v~~~a~~~L~--nl~~ 355 (529)
++++.+..+... .+..+-..|+..++++...-..-....- ....++.+.. ..+ ...+-.++.|.+. +++.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~ 1004 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLAD 1004 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHH
Confidence 455555555533 4556666676666666542111011111 1233333333 222 4456677777642 3332
Q ss_pred CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH----HHhccCCCCHHHHHHH
Q 009679 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP----LCDLLNCPDPRIVTVC 431 (529)
Q Consensus 356 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~----L~~lL~~~~~~v~~~~ 431 (529)
...+. ..-+.+|.+..+.+++.+....+.. ++|+.+-.- .+..|.+..-++. =-+.++...++....+
T Consensus 1005 ~~~ds-r~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1005 LCEDS-RAEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred Hhccc-hHHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 11111 1223455666666666655433333 222222110 0011111000000 0001123344566677
Q ss_pred HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009679 432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493 (529)
Q Consensus 432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~ 493 (529)
+.+|..++...-+.-. ..|.+....++. ++.+..+..+.++++...|...+++..
T Consensus 1077 isgIaklf~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 7788877754322211 133445545443 667777888899999988888877654
No 261
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.85 E-value=2.6 Score=42.27 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=110.2
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh----hHHHHHHHHHHHHhcCCCHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF----EIKKEAAWAISNATSGGSNE 402 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~----~v~~~a~~aL~nl~~~~~~~ 402 (529)
...++.++.++ +..-+.+|...+..+... +.....++....+..|..++.+++. ++....+.+++.+..++...
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 35577788888 777888888889888876 7888899999999999999998743 56667777777776655200
Q ss_pred HHHHHHHcCChHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHH
Q 009679 403 QIKFLVSQGCIKPLCDLL--NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 480 (529)
Q Consensus 403 ~~~~l~~~~~l~~L~~lL--~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~ 480 (529)
. ..+...++.....+. +..+..+...++..|..+...+.. ....+.+.--++.|.......|..
T Consensus 163 W--~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~------------~~~~v~eev~i~~li~hlq~~n~~ 228 (713)
T KOG2999|consen 163 W--ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT------------LRQLVAEEVPIETLIRHLQVSNQR 228 (713)
T ss_pred e--eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH------------HHHHHHhcCcHHHHHHHHHhcchH
Confidence 0 001122333333333 345566778888888888765542 255565666677777777778899
Q ss_pred HHHHHHHHHHhhCCCCCCC
Q 009679 481 IYEKAVKILETYWVEEDED 499 (529)
Q Consensus 481 v~~~a~~il~~~~~~~~~~ 499 (529)
++..|..+++.+|-.-.++
T Consensus 229 i~~~aial~nal~~~a~~~ 247 (713)
T KOG2999|consen 229 IQTCAIALLNALFRKAPDD 247 (713)
T ss_pred HHHHHHHHHHHHHhhCChH
Confidence 9999999999999865543
No 262
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.71 E-value=0.72 Score=34.86 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=58.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 148 (529)
.+...+..|.++.+.+|-.++..|++++.... ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 46778888999999999999999999997652 111123467788889999998 89999999999999985544
No 263
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.36 E-value=9.2 Score=38.55 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=107.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhcCChhhH
Q 009679 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQT 318 (529)
Q Consensus 243 l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~~~~~~~ 318 (529)
...+...+.+++...+..++..+..++... .....++....+..|..++.++.. .+...+++++..+....- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 345667777777777777888888877654 456678888888999999877653 455556666655544321 11
Q ss_pred HHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 319 QCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 319 ~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
...+...++..+..+..- ..+..+-..|...|-++..+++...+.+.+.--+..|+..+...+..++..|...+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111111222222232211 1145677788888888888877777777777789999999999999999998888888887
Q ss_pred CCCHHHHHHHH
Q 009679 398 GGSNEQIKFLV 408 (529)
Q Consensus 398 ~~~~~~~~~l~ 408 (529)
.+.++....+.
T Consensus 243 ~a~~~~R~~~~ 253 (713)
T KOG2999|consen 243 KAPDDKRFEMA 253 (713)
T ss_pred hCChHHHHHHH
Confidence 77655544443
No 264
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.34 E-value=15 Score=39.77 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh
Q 009679 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 250 (529)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll 250 (529)
+.++.+++-+|+++|--.....+ ..+|.+++-|..+....++.+..-+++.+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 46889999999999955443322 358899999988888888888888888887653 234467889999999
Q ss_pred ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009679 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 251 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~ 312 (529)
.++++-|+..++-.|.+|....--. .+..++-+++.-|-+.++.++..|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643111 111233334444455666777777777776653
No 265
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=23 Score=37.78 Aligned_cols=399 Identities=12% Similarity=0.133 Sum_probs=197.7
Q ss_pred HHHHhhcC--CCHHHHHHHHHHHHHHhcCC---CCChhhHHhh--cCChH-HHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009679 75 AMVAGVWS--DDRNIQLDATTQFRKLLSIE---RSPPINEVIQ--SGVVP-RFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (529)
Q Consensus 75 ~l~~~L~s--~~~~~~~~a~~~l~~lls~~---~~~~~~~~i~--~g~i~-~Li~lL~~~~~~~v~~~a~~~L~~l~~~~ 146 (529)
.++..+.+ .|+.++..|+..+.+.+..+ ..+....+.+ ...+. .++.++-+.. ..+|..-..+|+-++..+
T Consensus 41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence 44455543 36889999999999888732 0111112221 11222 3445555554 688998889999998754
Q ss_pred -hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHH--HHh----c-CChHHHHHHhcc-------
Q 009679 147 -SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDL--VLS----N-GALMPLLAQFNE------- 210 (529)
Q Consensus 147 -~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~--~~~----~-~~i~~l~~~l~~------- 210 (529)
|+.... .+|-|+.-+++.+-.+-...+.+-..+.. ..+.+|.. ..+ . ..-.++..++..
T Consensus 120 FP~kWpt-----Ll~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 120 FPDKWPT-----LLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred cchhhHH-----HHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 443333 35777777777666555555544444431 11111111 111 0 112244444421
Q ss_pred -chhHH-------HHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC---------C----hHHHHHHHHHHHHh
Q 009679 211 -HAKLS-------MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN---------D----DEVLTDACWALSYL 268 (529)
Q Consensus 211 -~~~~~-------~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~---------d----~~v~~~a~~~L~~l 268 (529)
..+.. +..-.+.....|+..+ |.--.......++...+++..+ + .+++...|..+.-.
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY 274 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY 274 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 11222 2222333444444443 3222233455566666666522 1 23566677777666
Q ss_pred ccCCchhHHHHHHhCcHHHHHHhcCCCC-----cchHHHHHHHHHHhhcCCh--------h------------------h
Q 009679 269 SDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------M------------------Q 317 (529)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~-----~~v~~~al~~L~~l~~~~~--------~------------------~ 317 (529)
+...++..+.++. .++...-.+|.+.. +.....|+..|.+++.... . .
T Consensus 275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e 353 (960)
T KOG1992|consen 275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE 353 (960)
T ss_pred HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence 6555554443333 34444445554422 2345567777777765311 1 1
Q ss_pred HHHHHhcCChHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-c--CChhHHHHHHHHHH
Q 009679 318 TQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-N--AEFEIKKEAAWAIS 393 (529)
Q Consensus 318 ~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~--~~~~v~~~a~~aL~ 393 (529)
-..+.+.+-++.+-.-|... |.+. |+.||..+..++......+-.++.. .+..+++-.. + .++.-+..|.+.+.
T Consensus 354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence 11223445566666666655 4444 5677788888887654444444432 2333433322 2 36666777888888
Q ss_pred HHhcCCCHHHH-----------HHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHH
Q 009679 394 NATSGGSNEQI-----------KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 462 (529)
Q Consensus 394 nl~~~~~~~~~-----------~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~ 462 (529)
.++..+..... .-+....+++.|.+-=-...|-++.. +|..++..-... -...+.
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~---aIKy~~~FR~ql-----------~~~~lm 497 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKAD---AIKYIYTFRNQL-----------GKEHLM 497 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhc---ccceeeeecccC-----------ChHHHH
Confidence 88765421110 01111112222211000122222222 222222221110 122222
Q ss_pred hhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009679 463 DAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 463 ~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 498 (529)
. .+..+.+....+..-|+..|...+++.+...++
T Consensus 498 ~--~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 498 A--LLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred H--HHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 2 366777777888889999999999999987655
No 266
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.32 E-value=12 Score=34.64 Aligned_cols=215 Identities=19% Similarity=0.161 Sum_probs=121.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCC--CCh-hhHH-----------hhcCChHHHHHhhcCCCChHHHHHHHHHHHHH
Q 009679 77 VAGVWSDDRNIQLDATTQFRKLLSIER--SPP-INEV-----------IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142 (529)
Q Consensus 77 ~~~L~s~~~~~~~~a~~~l~~lls~~~--~~~-~~~~-----------i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l 142 (529)
+.+|.+..+..=..|+..+.++++.-+ ++. .+.+ .-.|+.+.+++-+.++. ....++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 456667777666777777777765421 111 1111 11234444444455444 344555666666
Q ss_pred hcC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc
Q 009679 143 ASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH 211 (529)
Q Consensus 143 ~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~ 211 (529)
+.. +++.+-.+.-.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 542 1222322222356788888787765 2344556677888873321 12344444444322
Q ss_pred ---hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH
Q 009679 212 ---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (529)
Q Consensus 212 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 288 (529)
...+....++..|..-.. |. ....++..|..+|.+.-+.++..++..|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 234444555544443221 11 2245667788999888899999999999998866443322 455788889
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcC
Q 009679 289 VELLRHPSPSVLIPALRTVGNIVTG 313 (529)
Q Consensus 289 ~~lL~~~~~~v~~~al~~L~~l~~~ 313 (529)
.+++..+. -..|+.+|-.+...
T Consensus 234 lrlL~t~~---~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 234 LRLLQTDL---WMEALEVLDEIVTR 255 (262)
T ss_pred HHHhCCcc---HHHHHHHHHHHHhh
Confidence 99987654 55677777666543
No 267
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.26 E-value=2 Score=37.52 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=61.1
Q ss_pred cCCchhHHHHHHhCcHHHHHHhcCC---------CCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhccCCc
Q 009679 270 DGTNDKIQAVIEAGVCPRLVELLRH---------PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYK 339 (529)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~lL~~---------~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~ 339 (529)
..+...++.+++.|++..|+.+|.. .+......+++|+-.+..... ....++ ..+++..|...|.++ +
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~ 171 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-N 171 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-S
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-C
Confidence 3445677888888999999988743 233567789999988887544 444455 578899999999988 8
Q ss_pred hhHHHHHHHHHHHHh
Q 009679 340 KSIKKEACWTISNIT 354 (529)
Q Consensus 340 ~~v~~~a~~~L~nl~ 354 (529)
..+|..++.+|+.+|
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998876
No 268
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.61 E-value=3.9 Score=36.02 Aligned_cols=108 Identities=12% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCHHHHHH-HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC---CC-ChHHHHHHHHHHHHHhcCC-hhhHHHHHhC
Q 009679 83 DDRNIQLD-ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR---DD-FPQLQFEAAWALTNIASGT-SENTRVVIDH 156 (529)
Q Consensus 83 ~~~~~~~~-a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~---~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~ 156 (529)
+...-+.. |+..|..++| . .+....+++..+--.+..+|.. .. .+-+|..++.+++.+...+ ++....+...
T Consensus 111 ~~~snRvcnaL~lLQclaS-h-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 111 ERESNRVCNALNLLQCLAS-H-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred chhhhHHHHHHHHHHHHhc-C-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 33444444 4444444443 2 3333444454433233344432 21 2568999999999998854 5556677788
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009679 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
.++|.+++.+...++--+..++.+++.+..++....
T Consensus 189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 999999999999888888999999999988776543
No 269
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=42 Score=39.48 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=139.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchh
Q 009679 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 237 (529)
Q Consensus 159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 237 (529)
+..++..+..+++..+-.+..+++.++..-+.- . .-......++..+....++-.+.....++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-P--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-c--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344445555577777777777777777433211 0 111234556666645555555555556666666554 334444
Q ss_pred hhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc----
Q 009679 238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT---- 312 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~---- 312 (529)
.....+..+..+..+. +|.|+..++.++..+.+.........+. -.+..+..+|.+..+ .......+.+....
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence 5556667777777655 5699999999999998765444333333 233344444433211 22222222222222
Q ss_pred -------------CChh-hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009679 313 -------------GDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 313 -------------~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
++.. .....+..-.+-...-++.++ ++-++.++..++-++-.-.+.+.. -.-+|+.++.++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 2211 011111112223333344555 788888898888877653333211 1125666777666
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHH---HHHH---------------HcCChHHHHhccC-CCCHHHHHHHHHHHHHHH
Q 009679 379 NAEFEIKKEAAWAISNATSGGSNEQI---KFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~~~~~~---~~l~---------------~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~ 439 (529)
+...-.|.....++..+......+.. ..+. +.|.=-.+..++. ..|......++..+.+++
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 65444555555555444432211111 1111 2333334444554 355667777777777754
Q ss_pred H
Q 009679 440 K 440 (529)
Q Consensus 440 ~ 440 (529)
.
T Consensus 1189 ~ 1189 (2067)
T KOG1822|consen 1189 N 1189 (2067)
T ss_pred H
Confidence 3
No 270
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.11 E-value=8.7 Score=41.03 Aligned_cols=316 Identities=16% Similarity=0.132 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH------hC
Q 009679 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI------DH 156 (529)
Q Consensus 83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~ 156 (529)
+|..+...++..+..++. +......+++.|+|..|+.. +.-...-.-...||+.|.. .......+. -+
T Consensus 365 ~d~~l~~~~~k~~~~l~~--h~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAA--HRKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHH--hhHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 445566677777777664 34667778888887766654 2212333444457777765 222222221 12
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc------------------chhHHHHH
Q 009679 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE------------------HAKLSMLR 218 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~------------------~~~~~~~~ 218 (529)
.++..-+.+|.-....-+.++...++..... ...-+.+-.+..+..|+.++.. ..+.....
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 3445555666544333333333332221111 1122333344566666666631 11223334
Q ss_pred HHHHHHhhhhcCC-----CC-CchhhhhchHHHHHHhhccC------ChHHHHHHHHHHHHhccCCc-------hhHHHH
Q 009679 219 NATWTLSNFCRGK-----PQ-PLFEQTRPALPALERLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV 279 (529)
Q Consensus 219 ~a~~~L~~l~~~~-----~~-~~~~~~~~~l~~L~~ll~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~ 279 (529)
..|.+|....+.. .. .......+..+..++-+... ..+..+.++|-+-.+..... ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 4455544322211 00 00000011112222212111 12233444554444332222 223456
Q ss_pred HHhCcHHHHHHhcCCC-C-------cchHHHHHHHHHHhhcCChhhHHHHH------h--cCChHHHHHHhccC---Cch
Q 009679 280 IEAGVCPRLVELLRHP-S-------PSVLIPALRTVGNIVTGDDMQTQCII------N--HQALPCLLDLLTQN---YKK 340 (529)
Q Consensus 280 ~~~~~~~~L~~lL~~~-~-------~~v~~~al~~L~~l~~~~~~~~~~~~------~--~~~l~~L~~lL~~~---~~~ 340 (529)
.+.+++..++++...+ + ......|+.+|.-+..-.+-+. .+. + ..++..|+..-... .++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~-~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQK-ALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHH-HHHHHHhhcccccCceEEEeecccccccccCH
Confidence 6778888888876432 2 2345566666665554333332 222 1 12344444433221 278
Q ss_pred hHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHHhcCC----
Q 009679 341 SIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE---- 381 (529)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~l~~L~~~l~~~~---- 381 (529)
++++.|+.+|-|+..+.|+.. ..+...++|..|+.+|+...
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 899999999998876532211 12234678999999998753
Q ss_pred -hhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009679 382 -FEIKKEAAWAISNATSGGSNEQIKFLV 408 (529)
Q Consensus 382 -~~v~~~a~~aL~nl~~~~~~~~~~~l~ 408 (529)
..+|..||.+|.-++... ...+.|.
T Consensus 757 aD~IRalAc~~L~GLaR~~--tVrQIlt 782 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDD--TVRQILT 782 (1516)
T ss_pred HHHHHHHHHHHHhccccCc--HHHHHHH
Confidence 258999999999999854 4444443
No 271
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.10 E-value=29 Score=36.93 Aligned_cols=318 Identities=16% Similarity=0.099 Sum_probs=163.6
Q ss_pred HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCC
Q 009679 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDS 188 (529)
Q Consensus 110 ~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~ 188 (529)
.....++|.+- ...++..-+|+..+|.++.-.+ .+...... .-+-..++.+++.. +.-++-.++.++.-...|-
T Consensus 484 Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvs--vq~~~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~ 558 (978)
T KOG1993|consen 484 WLQEALLPELA--NDHGNSRIIRRRVAWILGQWVS--VQQKLELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW 558 (978)
T ss_pred HHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhh--eechHhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhc
Confidence 33444555554 2233324679999999999876 12221111 11236778888885 6777888888888776443
Q ss_pred chhHHHHHh--cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh---hchHHHHHHhhccCChHHHHHHHH
Q 009679 189 PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT---RPALPALERLIHSNDDEVLTDACW 263 (529)
Q Consensus 189 ~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~ 263 (529)
.-..+.+.. .+....+..++..-+..+.+..++.+++.+...-........ ...+|.|-+-- .+.+-++...+.
T Consensus 559 nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~ 637 (978)
T KOG1993|consen 559 NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLA 637 (978)
T ss_pred cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHH
Confidence 211222211 223444555554445566677777777776654311111111 22222222211 345667788888
Q ss_pred HHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-Ccc---hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCc
Q 009679 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 339 (529)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~---v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 339 (529)
++.++...-......+ ..++-.++++-.++ +++ ..+-+....+............++ +++|.+...+... .
T Consensus 638 ~L~~lV~alg~qS~~~--~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-t 712 (978)
T KOG1993|consen 638 TLRNLVNALGAQSFEF--YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-T 712 (978)
T ss_pred HHHHHHHHhccCCccc--hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-h
Confidence 8888875422211111 12333444444332 222 233343333333333333333332 4678888888655 3
Q ss_pred hhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 340 KSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 340 ~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
. .-..+..++....- .++... .-...|++..+.+++.+-..+-....+..+..+... ......+...++++.+..
T Consensus 713 e-~L~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~lf~ 788 (978)
T KOG1993|consen 713 E-NLPTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRLFL 788 (978)
T ss_pred h-hHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHHHH
Confidence 3 33344444443332 333321 222346788888888765555556666666666653 234454555667766655
Q ss_pred cc--CCCCHHHHHHHHHHHHHHHHhh
Q 009679 419 LL--NCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 419 lL--~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
-+ +.+.|.+....+.++..+.-.+
T Consensus 789 ~I~~~~~yP~~~~~yl~vvaRi~l~n 814 (978)
T KOG1993|consen 789 SIAENDKYPYVMGEYLLVVARISLRN 814 (978)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHhcC
Confidence 43 3455666666666666665433
No 272
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.83 E-value=12 Score=39.45 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=92.2
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhcc---chhHHHHHHHHHHHhh
Q 009679 158 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN 226 (529)
Q Consensus 158 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~ 226 (529)
.+..+..++.+ ....++..|+.+++++.. +.+.+. .......++.+...|.. ..+..-+..++.+|.|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35666677765 456788888988888863 222111 11112345556655532 2244445566777777
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHH
Q 009679 227 FCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI 301 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~ 301 (529)
+-.. ..++.+...+. .....++..|+++|..++...+...+ +.++.+..+ .++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence 6543 34455555554 22567999999999998865544333 556666644 4567888
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009679 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (529)
Q Consensus 302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 345 (529)
.|+..|-.. ++.. ..+..+...+..+.+.+|+..
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence 777666442 1211 235556666666545555443
No 273
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.47 E-value=4.4 Score=33.37 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=60.0
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~ 440 (529)
.+..+..-+.++++.++..|+..|-.+..++...+...+...+++..|+.++.. .++.|+..++..+.....
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999999888888888888899899999853 567899998888876654
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.42 E-value=3.2 Score=34.46 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=60.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~ 439 (529)
.+..|..-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..|....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 455666777888999999999999999999998888888888999999999987 78889988888877654
No 275
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.40 E-value=8.6 Score=35.88 Aligned_cols=143 Identities=19% Similarity=0.169 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--Ch
Q 009679 130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL 201 (529)
Q Consensus 130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i 201 (529)
+-+.=++..++-++. ++.....+...+ +...+..++.. ..+..+-.++++++|+..... .+..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 446666666666665 444444443332 23444444322 568888999999999987655 455555432 23
Q ss_pred HHHHHHhccch---hHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCch
Q 009679 202 MPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 202 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
...+..+.... +..++..++.++.|++... ..........++..+.+.+. ..|+++...++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33333332332 6778888888888887543 11122223345666666433 25899999999999999966543
No 276
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=89.35 E-value=12 Score=36.43 Aligned_cols=103 Identities=14% Similarity=0.018 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchh----HHHHHHHHHHHhhhhcCC--CCCchhhhhch
Q 009679 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK----LSMLRNATWTLSNFCRGK--PQPLFEQTRPA 242 (529)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~ 242 (529)
++..+...++.+|+|+...++..++..++......+++.+....+ ..+...-+..|.-+..-. ..........+
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 346788889999999999999999999998888888887643221 111111122222222211 11222333456
Q ss_pred HHHHHHhhccC---------------ChHHHHHHHHHHHHhccC
Q 009679 243 LPALERLIHSN---------------DDEVLTDACWALSYLSDG 271 (529)
Q Consensus 243 l~~L~~ll~~~---------------d~~v~~~a~~~L~~l~~~ 271 (529)
++.+.+.+.+. +......++.++.|++..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 66676666521 123456677777777754
No 277
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=22 Score=36.86 Aligned_cols=287 Identities=14% Similarity=0.159 Sum_probs=146.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
++..+=+.+.++++.+..-|+-.+.-.-++..++ + ..++..|...+++++ ..++..|+.-|+-.-.++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 3455555566666555544444433222221110 0 123445667777777 677877777776655532 333
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009679 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 229 (529)
.+. ..|..++.+ ...++...|..+|+.+...+.. ..+ ...++..++..=.........+.....|..+-.
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 332 145555655 3456777788888887644321 111 111233333332111223334444444444433
Q ss_pred CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC---cchHHHHHHH
Q 009679 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT 306 (529)
Q Consensus 230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~al~~ 306 (529)
+.. ..+...+..+..-...++..+-..+...+-......-.+-+ ..+..+-.... ..-...|+--
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 321 12222222222222333333222222222111111010000 12222222211 1223356666
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 386 (529)
++-++.+.+-..+. .+..+-.+|..+ .+.+|+..-.+++-++..+|.. +++..|-....+.|.++.-
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 66777766644432 345677778888 8899999999999998887763 3677788888888999999
Q ss_pred HHHHHHHHHhcCCC
Q 009679 387 EAAWAISNATSGGS 400 (529)
Q Consensus 387 ~a~~aL~nl~~~~~ 400 (529)
.++.+++-+-.+.+
T Consensus 694 naIfamGLiGAGTn 707 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTN 707 (878)
T ss_pred HHHHHhccccCCcc
Confidence 99998887766543
No 278
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=88.74 E-value=7.5 Score=41.49 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=109.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 151 (529)
.|..++..|.|.+..+...+-..+...+..++.+ -++..|+++.-+..+ ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 5778999999999999988888888887654222 135566665443331 335556665433 3222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
..+..|-.++.. +.-|-.++..|+.+....+..-..+.+...+..|+++|..+.+..+...|+.+|..|.-..
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 123555556654 4677889999999998777777888899999999999988889999999998888887665
Q ss_pred CCCchhhhhchHHHHHHhh
Q 009679 232 PQPLFEQTRPALPALERLI 250 (529)
Q Consensus 232 ~~~~~~~~~~~l~~L~~ll 250 (529)
|......+..++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444555555555555
No 279
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.51 E-value=1.4 Score=36.58 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=60.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..+.+.|+++++.++..|+..|-.+..+-......++...+++..|+.++.....+.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988764344566777888999999999754448899999988888775
No 280
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.40 E-value=18 Score=36.40 Aligned_cols=262 Identities=10% Similarity=0.065 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hHH--HHHhcCChHHH
Q 009679 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRD--LVLSNGALMPL 204 (529)
Q Consensus 129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~~--~~~~~~~i~~l 204 (529)
+.+....++++..+-.+.......++. .++..+....++ .++..-.....+++.+...... ..+ .-++...++.+
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 556666666665555543333333332 123333334444 4566666666666666432111 111 12344567777
Q ss_pred HHHhccchhHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh-
Q 009679 205 LAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA- 282 (529)
Q Consensus 205 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~- 282 (529)
...| ...-.+..-++...++.|.+..+ .........++|.|+.-.--....-.-...+.|..+....... +...
T Consensus 123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i~~~~ 198 (435)
T PF03378_consen 123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---IVANN 198 (435)
T ss_dssp HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG-------S
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---hcchh
Confidence 7777 44445666777777777766554 2222233444444432211111111122223333322222111 1211
Q ss_pred ---CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CC
Q 009679 283 ---GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GN 357 (529)
Q Consensus 283 ---~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~ 357 (529)
+++...-+++.+... -..+...|..+...-+.. ....+. .++..++.-|++....+..+.-+..++.++. .+
T Consensus 199 ~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 199 QLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp -CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence 233333345555432 245777777777655432 111121 3555566666655466666666666665554 23
Q ss_pred HHHHHHHHH---cCCHHHHHHH--H---hc-CChhHHHHHHHHHHHHhcC
Q 009679 358 VNQIQAIIE---AGIIGPLVNL--L---LN-AEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 358 ~~~~~~l~~---~~~l~~L~~~--l---~~-~~~~v~~~a~~aL~nl~~~ 398 (529)
++..-..++ .|++..++.- + .. ..+.-|+-++-+++++...
T Consensus 276 ~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 276 PDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 444444443 3444333331 1 11 1233456666666666543
No 281
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.18 E-value=5.7 Score=32.49 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=60.1
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC---CCHHHHHHHHHHHHHHHHh
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKA 441 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~~~~v~~~~l~aL~~l~~~ 441 (529)
.+..|..-|.++++.++..|+..|-.++.+++..+...+.....+..|..++.. .++.|+..++..+......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999999887777777777788889998875 4778999988888877544
No 282
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.92 E-value=9.2 Score=30.59 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh-
Q 009679 386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA- 464 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~- 464 (529)
.....-|.+++.. ++..+.. +++.|..=|+..++.|+..+|.+|..++..+... |...+.+.
T Consensus 19 gy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~ 81 (122)
T cd03572 19 GYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNS 81 (122)
T ss_pred hHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhH
Confidence 3444455566554 3333333 5678888888888999999999999999877432 44444333
Q ss_pred chHHHHHHHhc--------CCCHHHHHHHHHHHHhhCCCC
Q 009679 465 EGLEKIENLQS--------HDNTEIYEKAVKILETYWVEE 496 (529)
Q Consensus 465 g~~~~l~~L~~--------~~~~~v~~~a~~il~~~~~~~ 496 (529)
..+..+.+... ..+..|+..|..++.-.|+++
T Consensus 82 ~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 82 AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 23333444433 244679999999999999864
No 283
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=38 Score=35.34 Aligned_cols=300 Identities=12% Similarity=0.093 Sum_probs=144.7
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009679 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (529)
Q Consensus 71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 149 (529)
..++.+.+.|. +.|+..+..|-.+|+.+.... ..+..-.-++..++.|--+.-|..+|..+..+....
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~sp-----------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l 73 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESP-----------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL 73 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC
Confidence 44566666665 789999999999999875321 123334445555555667778888888887744211
Q ss_pred HHHHHhCCChHHHHHhhCCCCH----HHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009679 150 TRVVIDHGAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (529)
Q Consensus 150 ~~~~~~~g~i~~L~~lL~~~~~----~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 223 (529)
.......+-..++..+....+ -+....+..++.+..-.- ..++...-.+.+..+.+.+ +..+.+-...+...
T Consensus 74 -pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 74 -PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred -cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 000111223556666655332 333344444555542211 1122222334667777777 44444444445556
Q ss_pred HhhhhcCC--CC--CchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCC-chhHHHHHHhCcHHHHHHh----cC
Q 009679 224 LSNFCRGK--PQ--PLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVEL----LR 293 (529)
Q Consensus 224 L~~l~~~~--~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~l----L~ 293 (529)
|..|...- +. .....- ..+..-++++ --+|..-+|..|.....-. .+..+ .|.+..++++ +.
T Consensus 152 LsqLvqemN~~~~~~p~tkH----Rkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l~Cl~ 223 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKH----RKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNLNCLN 223 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHH----HHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHhhhcc
Confidence 66555432 11 110000 0111111111 1234555555555554211 11111 1332222222 21
Q ss_pred CCC-cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc------CCHHHHHHHHH
Q 009679 294 HPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA------GNVNQIQAIIE 366 (529)
Q Consensus 294 ~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~ 366 (529)
-+- .........-+++. .-...++..+.+...+..+..+..+- .+...+.|..+|..+++ ++++...++..
T Consensus 224 FDfiGss~DEssed~ctV-QIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~ 301 (1082)
T KOG1410|consen 224 FDFIGSSTDESSEDLCTV-QIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAERAKYLQH 301 (1082)
T ss_pred ccccccccccccccccce-ecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 000 00000000000000 01123455566778888889999887 78888999999998886 23333332222
Q ss_pred cCCHHHHHHHHhcC----ChhHHHHHHHHHHHH
Q 009679 367 AGIIGPLVNLLLNA----EFEIKKEAAWAISNA 395 (529)
Q Consensus 367 ~~~l~~L~~~l~~~----~~~v~~~a~~aL~nl 395 (529)
++....+++.++ |+.--.+-|..|+.+
T Consensus 302 --Lv~Gvk~il~np~~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 302 --LVEGVKRILENPQGLSDPANYHEFCRLLARL 332 (1082)
T ss_pred --HHHHHHHHHhCCcCCCCcchHHHHHHHHHHH
Confidence 555666666654 444444455555544
No 284
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=87.65 E-value=6 Score=47.73 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=142.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCC-----ChhhHHhhcCChHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 80 VWSDDRNIQLDATTQFRKLLSIERS-----PPINEVIQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 80 L~s~~~~~~~~a~~~l~~lls~~~~-----~~~~~~i~~g~i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
+...+.+.+..+...+..++..... +..-..+ ...+..+..+- ..++ +.++......+. ...-...
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-KEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH-HHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence 3466778888887777766644211 0000001 11222222221 2333 555555444433 1222233
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009679 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (529)
Q Consensus 154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 233 (529)
...+.+..+...+..+.-.+++.+...+++++..++...-..+....+..+-.+- .+.-..+......-+..+....+.
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHH
Confidence 4445566677777778889999999999999987764322211111111111111 111111111111111111111122
Q ss_pred CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhc
Q 009679 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~ 312 (529)
.........+..++..+...+..+...+..+++.||..........++ ..++.+.+.+.. .+..-+..++++++++..
T Consensus 641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 222334556667777777888888899999999998765544444444 455555555543 455667889999999987
Q ss_pred CChhhHHHHH-hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 313 GDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 313 ~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
.......... ...++..+...+.......+|.++...++++...
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 5443222211 1234555666666665677888888888877664
No 285
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.23 E-value=2.3 Score=38.10 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCC
Q 009679 130 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGA 200 (529)
Q Consensus 130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~ 200 (529)
.-|..|+.+|+.++- ...+.+.++..+- +..|.+++.. ++...|+.|+-.|.+++..+ ..+|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 358899999999997 4555555555543 3455556655 78899999999999999655 445566777889
Q ss_pred hHHHHHHhcc
Q 009679 201 LMPLLAQFNE 210 (529)
Q Consensus 201 i~~l~~~l~~ 210 (529)
+..|+.++..
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999943
No 286
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.15 E-value=6.1 Score=30.18 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=56.7
Q ss_pred cCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 009679 410 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489 (529)
Q Consensus 410 ~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il 489 (529)
...+..|++.+..+++.....++..|..+++... ....+...|+.+.+.++..+.+++.+.....++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567788888888888888899999998876643 267788899999999999999999998888888
Q ss_pred Hh
Q 009679 490 ET 491 (529)
Q Consensus 490 ~~ 491 (529)
+.
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 65
No 287
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.02 E-value=20 Score=31.33 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=55.7
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 190 (529)
.++.++++..+++ ..++..|+.++..+....--+.. -.+|.|+.+..++++.++..|...+..+....+.
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 5677788888888 89999999999888874322222 2579999999999999999999999999865443
No 288
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.44 E-value=35 Score=33.54 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-----CcchHHHHHHHHHHhhcCCh--------hhHHHHH
Q 009679 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVTGDD--------MQTQCII 322 (529)
Q Consensus 256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-----~~~v~~~al~~L~~l~~~~~--------~~~~~~~ 322 (529)
.++..+|..+...+...++....++. .++..+..+|..- ...+...|+..|+.++.... ...+.++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 45566666666555443333333333 3445555555331 23455567777777665321 1112222
Q ss_pred hc------------------CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh---cCC
Q 009679 323 NH------------------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAE 381 (529)
Q Consensus 323 ~~------------------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~ 381 (529)
+. .-.+.+..-+.......-|.+|+..+..++.........++.. .+..++.-.. ..+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCccc
Confidence 21 1122222222222134557788888988887534433333321 2333322211 236
Q ss_pred hhHHHHHHHHHHHHhcCCCH------H-----HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009679 382 FEIKKEAAWAISNATSGGSN------E-----QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 450 (529)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~~------~-----~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~ 450 (529)
+.-+..|+..++.++..+.. . ....+....+++-|. --....|-++..+++.+...-..-.
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~------- 340 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP------- 340 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-------
Confidence 78888999999999986621 0 234455556666666 1123445566666666654432221
Q ss_pred CCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 009679 451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489 (529)
Q Consensus 451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il 489 (529)
.+.+ .+.++.+.....+++.-|+..|...|
T Consensus 341 -------~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 -------KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -------HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -------HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 23577788888899888988887653
No 289
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=86.42 E-value=26 Score=32.07 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHH
Q 009679 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQ 360 (529)
Q Consensus 282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~ 360 (529)
...++.++++++.++.. .-..+|-.....-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus 72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36778889998765542 122223322211111111223356677778886653 4568889999999999866766
Q ss_pred HHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH
Q 009679 361 IQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 415 (529)
Q Consensus 361 ~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~ 415 (529)
+..+++ .+..++.. +...+..+...-+..++.+-...-...++.+.+.|+++.
T Consensus 148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 666666 45555554 443333333333333333322212233445556666655
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.21 E-value=8.9 Score=30.67 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=51.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCC--------HHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD--------PRIVTVCLEGLENIL 439 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~--------~~v~~~~l~aL~~l~ 439 (529)
++..|..-|++.++.|+..++.+|..++..+++.+...+... ..|..+...-...| ..|+..+-+++..|+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 455778888888999999999999999999988887776554 34555555443233 247777777777665
Q ss_pred H
Q 009679 440 K 440 (529)
Q Consensus 440 ~ 440 (529)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 291
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.04 E-value=2.3 Score=34.82 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=58.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChH-HHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~-v~~~a~~~L~~l~~ 144 (529)
+.+..+.+.|+++++.++..|+..|-.++.+-..+...++....++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999887654445566778889999999988765333 88888888877665
No 292
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.87 E-value=16 Score=31.26 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GDS 188 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~ 188 (529)
.+..+..+|.+.+ +.-+..++..+..++..++ .+.+.+. ..+..++..|+. +...+.+.++.++..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5567888898888 8888888888877776432 2334333 356788888887 45778888888888886 333
Q ss_pred chhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCC
Q 009679 189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~ 232 (529)
++....+.. ..++.++..+-.- .+......++.+|..+....|
T Consensus 103 p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 443333222 2233333332111 114556666677776666543
No 293
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=85.81 E-value=24 Score=33.69 Aligned_cols=173 Identities=11% Similarity=0.075 Sum_probs=97.2
Q ss_pred CcchHHHHHHHHHHhhcCChhhHHHHHhc-----------CChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHH
Q 009679 296 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVN 359 (529)
Q Consensus 296 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~ 359 (529)
.-.+|..|+.|+.....++++....+++. .....|...|-+. .++.--.-|+.++..+..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 34688999999999999888777666621 1122355544411 0343445788889999998888
Q ss_pred HHHHHHHc--C----------CHHHHHHHHhc-----CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccC
Q 009679 360 QIQAIIEA--G----------IIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLN 421 (529)
Q Consensus 360 ~~~~l~~~--~----------~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~ 421 (529)
.+..+..- | .++.+..+|.. .++.++..-+..|+-.... ++.-+..+... ..++.|++...
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHhh
Confidence 76665431 1 35556665544 2667777777778877776 45666666655 46888888643
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHH-HhhchHHHHHHH
Q 009679 422 ---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI-DDAEGLEKIENL 473 (529)
Q Consensus 422 ---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~l~~L 473 (529)
..++-|+..+.-.|+-...++.+... ..-..+..++ .+.|--..+.++
T Consensus 210 ~~~~~~~~VqGL~A~LLGicyef~~~~s~----~~R~~l~~ll~~riG~d~y~~kl 261 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICYEFSTKDSP----IPRATLHPLLTKRIGRDNYFSKL 261 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHHHT-S-SCC----C-HHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhcCCCCC----cCHHHHHHHHHHhcCHHHHHHHH
Confidence 23444555555566666665533221 1123455555 345543334444
No 294
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.68 E-value=8 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=60.4
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~ 440 (529)
.+..|..-|.++++.++..|+..|-.++.+++......+...+++..|..++. ..++.|+..++..+.....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999999988777788888899999999887 5677899998888886654
No 295
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.55 E-value=7.3 Score=36.70 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=50.2
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWAL 181 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 181 (529)
++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 7899999999988 9999999999999998544333 23566776655444 333 24456677777777
Q ss_pred HHhh
Q 009679 182 GNVA 185 (529)
Q Consensus 182 ~nl~ 185 (529)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 296
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.34 E-value=3.4 Score=36.37 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc---C--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN---A--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~---~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
|...|..++++ |+....++++.+--.+...|.. . ...+|..++.+++.+..++++.....+....+++.+++++
T Consensus 120 aL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 120 ALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 34444445544 7777777776553333333332 2 3458889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q 009679 421 NCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 421 ~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
+.+..--+..+..++..++..+.
T Consensus 199 e~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccch
Confidence 98877666777777777765543
No 297
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=85.26 E-value=8.8 Score=29.32 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhHHh-hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009679 86 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (529)
Q Consensus 86 ~~~~~a~~~l~~lls~~~~~~~~~~i-~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (529)
++|..|+..+..-+... --....+. ...++..|++.+..+. +..+..++..|..++. ++.....+.+-|++..|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45555665554333221 11122233 4567788888888888 6688999999999988 6777788888999888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009679 165 LLSSPTDDVREQAVWAL 181 (529)
Q Consensus 165 lL~~~~~~v~~~a~~~L 181 (529)
+=...++..+..+-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66555666655544443
No 298
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.18 E-value=4 Score=33.42 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=58.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~--~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..|.+.|+++++.++..|+..|-.+..+-..+....+....++..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988765344455555667888899999763 337899999998888776
No 299
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=84.69 E-value=32 Score=31.52 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=58.0
Q ss_pred hCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHh
Q 009679 155 DHGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLS 225 (529)
Q Consensus 155 ~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~ 225 (529)
+..+++.++++++.++.. +.+....++..++ .|-+..+..++.+. .+.-++..++.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 345789999999775532 2222222333332 34566777777433 36677888999999
Q ss_pred hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009679 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (529)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l 268 (529)
.+....+......+.-+...+-..+..++..+....+..++.|
T Consensus 139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 139 FLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 9999876655555444444444445444444334333333333
No 300
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.36 E-value=2.8 Score=37.55 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHhc-------CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 009679 298 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGI 369 (529)
Q Consensus 298 ~v~~~al~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 369 (529)
.-+..|+.+|+.++-.. .....++.. .++..|..++...++...|+-|+-.|++++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 34788999999998632 233333322 35566777777766888999999999999998776665544 6788
Q ss_pred HHHHHHHHhcCCh
Q 009679 370 IGPLVNLLLNAEF 382 (529)
Q Consensus 370 l~~L~~~l~~~~~ 382 (529)
+..|+..+++.+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 301
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.22 E-value=3.4 Score=34.03 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=59.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~-----~~~~~v~~~a~~~L~~l~~ 144 (529)
+.+..+.+.|++.++.++..|+..|-.+..+-......++...+++..|++++.. ..++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999988876544556677788899999999963 1237899988888877765
No 302
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.01 E-value=12 Score=35.25 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=73.5
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH-HHHHhcCChHHHHHHhcc-----------CCchhHHHHHHHHH
Q 009679 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQ-----------NYKKSIKKEACWTI 350 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~-----------~~~~~v~~~a~~~L 350 (529)
-++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+...+.. .++..+-..|.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999998554332 224456665555444421 11344556666666
Q ss_pred HHHhcC--------CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009679 351 SNITAG--------NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 422 (529)
Q Consensus 351 ~nl~~~--------~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~ 422 (529)
..++.. .......++..+++..+...-....+.++...+..+..+...-+....+++-+ +++.|.+.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n 276 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN 276 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence 666331 11122223333333333222222235555555555555554333333333322 34444444443
No 303
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=83.80 E-value=68 Score=39.46 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=134.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH---HHH--hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch
Q 009679 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRD---LVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (529)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 236 (529)
+...+...+.+++..+..++..+......+.+ ... ....+..+..+-..++++.++......+. . .....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~--~~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E--RFDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c--chhhh
Confidence 44456667888988887766666533222110 001 11223333333323444443333322222 1 01111
Q ss_pred hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009679 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
..-...+..+...+....-.++..+...+++++..++...-..+....+..+-++-.+....+...+..-+..+..+...
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 11223344455555556666778888888888876653322222222222222222222222223333333333333333
Q ss_pred hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 009679 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 395 (529)
Q Consensus 317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl 395 (529)
.....++ ..+..+...+..+ ++.+-+.+..+++.+|..+-+.....++ ..++.+.+.+.+. ...-+..+.+++.++
T Consensus 641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 3333333 4557777777887 7788889999999999843333333344 4666666666653 556778899999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhccCCCC-HHHHHHHHHHHHHH
Q 009679 396 TSGGSNEQIKFLVSQGCIKPLCDLLNCPD-PRIVTVCLEGLENI 438 (529)
Q Consensus 396 ~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~v~~~~l~aL~~l 438 (529)
.....-....+....-++..|...+.... ..++..++..+.++
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 87543222222222233445555544433 33444555555533
No 304
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.51 E-value=73 Score=34.75 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=69.0
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 448 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~ 448 (529)
+...+...+..+++..-+..+.++.++..-......+ ...-++.-..-....-..+...+..+|.++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~----- 513 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP----- 513 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence 4555666666677777777887877776532100000 00001111110001111233444455555544432
Q ss_pred CCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009679 449 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 497 (529)
Q Consensus 449 ~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 497 (529)
.....++.+.+....+..+.-|++.++|+.|..+|...|+.+.
T Consensus 514 ------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 514 ------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred ------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 3468888888999999999999999999999999999997543
No 305
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.12 E-value=64 Score=33.79 Aligned_cols=309 Identities=13% Similarity=0.071 Sum_probs=154.1
Q ss_pred HHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009679 160 PIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (529)
Q Consensus 160 ~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 238 (529)
+.+++-| .+.++.-|..|-.+|..++.. |++ +....-++..+..+-..--|..+|..+.....+.....
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~s-pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSES-PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccC-HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 4455544 446778888888888887643 333 33333344344444455556677777776664333344
Q ss_pred hhchHHHHHHhhccCCh----HHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009679 239 TRPALPALERLIHSNDD----EVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (529)
Q Consensus 239 ~~~~l~~L~~ll~~~d~----~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~ 311 (529)
.-++-..++..+.+..| -+....+..++.++.. +....+.... +.+.-+.+.+..++.+....++.+|..++
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FR-d~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFR-DPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhh-hhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 44566677777776443 3455555556666532 1222222333 56777888888877777777777777776
Q ss_pred cCChhhHHHHHhcCCh-----HHHHHHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCC-hh
Q 009679 312 TGDDMQTQCIINHQAL-----PCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAE-FE 383 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~l-----~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~-~~ 383 (529)
..-. + ..+.. ..+..-+.+..-.++-.-|+..|.....- +.+....+.. .++..-.+++.-+- -.
T Consensus 157 qemN-~-----~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~-~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 157 QEMN-Q-----ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLM-QVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHhh-C-----CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHH-HHHHHHhhhcccccccc
Confidence 4210 0 00110 01111111110122333334333333210 1111111110 01222222222110 00
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 463 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 463 (529)
.-.+...-+|+.- .....+..+.+...+..+.++.++-.+..-..++.+|..+...-...- |...-..|...+.
T Consensus 230 s~DEssed~ctVQ--IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLF---N~aeRa~yl~~Lv- 303 (1082)
T KOG1410|consen 230 STDESSEDLCTVQ--IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLF---NGAERAKYLQHLV- 303 (1082)
T ss_pred cccccccccccee--cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHH-
Confidence 0001111122211 123445556667778889999998888888888888888865543321 1111123444443
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009679 464 AEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 464 ~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
.|....|++=+.-+++.-|+.-..+|.++
T Consensus 304 ~Gvk~il~np~~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 304 EGVKRILENPQGLSDPANYHEFCRLLARL 332 (1082)
T ss_pred HHHHHHHhCCcCCCCcchHHHHHHHHHHH
Confidence 46666666666667777776666666655
No 306
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.81 E-value=62 Score=33.42 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=93.0
Q ss_pred ChHHHHHHhccC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCCHHHHHH----HHhcCChhHHHHHHHHHH
Q 009679 326 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQI---QAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS 393 (529)
Q Consensus 326 ~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~l~~L~~----~l~~~~~~v~~~a~~aL~ 393 (529)
++..+...+.+. .+.++|..+...+ ...... .+... ...+..++.|.+-. --...+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344444444333 1356666666666 554442 23333 33344556665510 011236789999999999
Q ss_pred HHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH-HHHH
Q 009679 394 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE-KIEN 472 (529)
Q Consensus 394 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~l~~ 472 (529)
.++.....-.. -+-+++..|.+-|+.++++++..+-+||..++..-..... + ........+. .+..
T Consensus 400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~-------~---~~~~~~~~~~~l~~~ 466 (501)
T PF13001_consen 400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD-------D---EDEQKRLLLELLLLS 466 (501)
T ss_pred HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc-------c---hhHHHHHHHHHHHHh
Confidence 99987532211 1235677888888889999999999999999865433210 0 0000000011 1222
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009679 473 LQSHDNTEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 473 L~~~~~~~v~~~a~~il~~~~~~~~~ 498 (529)
...+....++..|.+-.+.+|+.++-
T Consensus 467 ~~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 467 YIQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred hccchhHHHHHHHHHHHHHhCCccch
Confidence 23455567889999999999987653
No 307
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.53 E-value=9.4 Score=32.94 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009679 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK 446 (529)
Q Consensus 368 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~ 446 (529)
-.+|.+++=|...+...+--|...+..+... +.......+ ..++.+|-..|.+.|+++...++.+|..|+..++...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3688888888888778888888888888877 433333333 3478889999999999999999999999976665543
No 308
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.44 E-value=4.6 Score=37.76 Aligned_cols=188 Identities=14% Similarity=0.091 Sum_probs=100.6
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcC--ChHHHHHHhccC---CchhHHHHHHHHHHHHhcCCHHH
Q 009679 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ--ALPCLLDLLTQN---YKKSIKKEACWTISNITAGNVNQ 360 (529)
Q Consensus 286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~ 360 (529)
..+...+..=....+-+++..+.-++.. +.....+-..+ +...+..++... ..+..+--++++++|+..+. ..
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~ 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PG 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CC
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-cc
Confidence 3444444443445678888888666653 33333332221 244455544332 25677888999999999852 22
Q ss_pred HHHHHH-cC-CHHHHHHHHhcC----ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh-ccCC-CCHHHHHHHH
Q 009679 361 IQAIIE-AG-IIGPLVNLLLNA----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD-LLNC-PDPRIVTVCL 432 (529)
Q Consensus 361 ~~~l~~-~~-~l~~L~~~l~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~~-~~~~v~~~~l 432 (529)
...+.. .+ .+...+..+... +..++..++..+.|++..........=....++..+.. +... .|+++.-.++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 333432 11 222233222232 57789999999999975211000000000113455555 3333 7899999999
Q ss_pred HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHH
Q 009679 433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVK 487 (529)
Q Consensus 433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~ 487 (529)
-||++++..+... .......|....+.... ....+.+++-+..
T Consensus 224 vAlGtL~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 224 VALGTLLSSSDSA------------KQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHHHHCCSHHH------------HHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHhccChhH------------HHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 9999999544332 33333345555555543 4556666665554
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.23 E-value=32 Score=29.73 Aligned_cols=75 Identities=9% Similarity=0.064 Sum_probs=55.7
Q ss_pred CcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009679 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (529)
Q Consensus 283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 359 (529)
..++.+++-|...+...+..|...+..+... .....-.++. .++..|...|.+. ++++...++.+|..++..++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence 5677788888887778888888887777765 3333333333 6778888888888 999999999999999664333
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.25 E-value=46 Score=30.87 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=98.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhHHHHHhcCChHHHHHHhccch---hHHHHHHHHHHHhh
Q 009679 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSN 226 (529)
Q Consensus 157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~ 226 (529)
|+-+.+.+-+.++ ...+.++..|..++... .+.|-.+.-...+|.++..+.... .......++..|+.
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4444455555543 34455667777766322 112323333334566666663222 12455667788888
Q ss_pred hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009679 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (529)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~ 306 (529)
+|....... ...++....+--..+..+....++..|+.-.- ++. +..++..++.+|.++-+.++..++.+
T Consensus 142 ~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 886532221 11122211111112234445555555543211 111 22566778999998888999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
|..+....+-... ...+++..+.++++++ .-.+|..+|-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999876554332 4556888899999776 34556666655543
No 311
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.05 E-value=61 Score=36.96 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cc---hhHHHHHHHHHHHhhhhcCC-CCCchhhh
Q 009679 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EH---AKLSMLRNATWTLSNFCRGK-PQPLFEQT 239 (529)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 239 (529)
.++..+++...+.++.++.....+ .++. + .+.+.+++. .. ....+.+.+..+|.-++.+. +..+....
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 446778888888888888754322 2222 2 455555553 11 24567778888888888877 66677777
Q ss_pred hchHHHHHHhhcc-CChHHHHHHHHHHHHhcc
Q 009679 240 RPALPALERLIHS-NDDEVLTDACWALSYLSD 270 (529)
Q Consensus 240 ~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~ 270 (529)
.+++..+...-+. .|-.+--.|+..++.+++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 8888888877653 466665556555555544
No 312
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=79.48 E-value=18 Score=35.17 Aligned_cols=216 Identities=18% Similarity=0.122 Sum_probs=106.3
Q ss_pred cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009679 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (529)
Q Consensus 113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (529)
..++..|..++..+.++......+.++..-...- ..-+...++..+.+-+.+....+|..-+..++.+........
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3456667777776554666666666665544311 001122345667777777666699888888888775111000
Q ss_pred HHHHhcCChHHHHHHhccc---hhHHHH---HHHHHHHhhhhcCC-CCCch-hhhhc-h----HHH-H--HHhhcc-CCh
Q 009679 193 DLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-PQPLF-EQTRP-A----LPA-L--ERLIHS-NDD 255 (529)
Q Consensus 193 ~~~~~~~~i~~l~~~l~~~---~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~~~~-~----l~~-L--~~ll~~-~d~ 255 (529)
..-.-..+++.|+..+... +.+... ..++.++..+.... +.... ..... . =|. + -++... .++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 1111223567777776321 111100 01111111111111 00000 00000 0 000 0 022222 345
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009679 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (529)
Q Consensus 256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 333 (529)
+-....+.++..+..........-.....-..++.++.+. .+.+|..|+.++..+...++.. +...++..+...
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~ 252 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKW 252 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHH
Confidence 5556666666666544332211111224556778888777 7899999999999998877753 223345555555
Q ss_pred hcc
Q 009679 334 LTQ 336 (529)
Q Consensus 334 L~~ 336 (529)
+..
T Consensus 253 l~~ 255 (339)
T PF12074_consen 253 LSS 255 (339)
T ss_pred HHh
Confidence 543
No 313
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=79.34 E-value=15 Score=40.97 Aligned_cols=237 Identities=20% Similarity=0.242 Sum_probs=131.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChH--------HHHHhhcCCCChHHHHHHHHHHHHH
Q 009679 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP--------RFIEFLSRDDFPQLQFEAAWALTNI 142 (529)
Q Consensus 71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~--------~Li~lL~~~~~~~v~~~a~~~L~~l 142 (529)
.-+..|++.+-++..++|+-++.+++.++...........++.-++. .+=++..+.-...++..++|+|..+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 34778888888999999999999999988754222222222221111 1111222111246899999999998
Q ss_pred hcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHHHhccchhHHHHHHH
Q 009679 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNA 220 (529)
Q Consensus 143 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a 220 (529)
...-.+... ...+..+.+++..+..+++...+..+..... ..++.+.. ..+++.++.-| .+.+..++..+
T Consensus 157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 874322211 1346778888888777777666655544321 11222221 11334444445 56677788888
Q ss_pred HHHHhhhhcCCCCCchhhhhchHHHHHHhhccCCh--HHHHHHHHHHHHhccCCc--h-hHHHHHHhCcHHHHHHhcCCC
Q 009679 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTN--D-KIQAVIEAGVCPRLVELLRHP 295 (529)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~--~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~~~~~L~~lL~~~ 295 (529)
+..+.-.....+......+..++..+...+..-|. .-.......+..++.... + ..+.-...|+++.+..++.+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 77777665554333333334444444444432221 001111112222332221 0 001112248899999999988
Q ss_pred CcchHHHHHHHHHHhhcCCh
Q 009679 296 SPSVLIPALRTVGNIVTGDD 315 (529)
Q Consensus 296 ~~~v~~~al~~L~~l~~~~~ 315 (529)
=..++..++..+..+.+..+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 77888889999888877543
No 314
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.55 E-value=56 Score=35.62 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=89.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009679 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 154 (529)
.+...+.++++..-...+.++..+...+.-++.. ...-++.-..-....- ..+......+|..++..+++....+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4455556777777777777777766554322222 1111111122222222 45677788899999998888877777
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009679 155 D-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (529)
Q Consensus 155 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 231 (529)
. .+....++.++-+++.++.+.|...|..+..... | .+.+-.++ +..-........+.+..+....
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 5 6888999999999999999999999999885322 2 22333334 2223345666777777776654
No 315
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.22 E-value=1.5e+02 Score=35.30 Aligned_cols=214 Identities=16% Similarity=0.090 Sum_probs=108.7
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH
Q 009679 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL 194 (529)
Q Consensus 116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (529)
+..++..|..++ |..+..+..++..++...++. .++ ++....++.-+.+ .++-.|..-..+++.+-.+....-..
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 334455555666 778888888888777622211 111 1233444554544 55555555555666654322111111
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC---hHHHHHHHHHHH-----
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDACWALS----- 266 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~L~----- 266 (529)
-.....+..++.+..++.++.++..++.++..+.....+.........+..+..++.+.. .++....-+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 111223556666665666779999999998888776533334455666666666665331 222221111111
Q ss_pred -Hhc-------cCCc--hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc
Q 009679 267 -YLS-------DGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (529)
Q Consensus 267 -~l~-------~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 336 (529)
.+. ..+. +... ......+-...-++.++++-++..+..++-++-...+..... .-+++.+..+|.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 111 1111 0111 222223333444456778888999999998887665532211 1234445555544
Q ss_pred C
Q 009679 337 N 337 (529)
Q Consensus 337 ~ 337 (529)
+
T Consensus 1110 ~ 1110 (2067)
T KOG1822|consen 1110 S 1110 (2067)
T ss_pred h
Confidence 4
No 316
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=77.71 E-value=49 Score=32.37 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----------cCChHHHHHHHHHHHHhccCC
Q 009679 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT 272 (529)
Q Consensus 203 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~L~~l~~~~ 272 (529)
.++..|.+......+..++.++.-|+++............+..|+.+.. ..|..|...++.||+|+.-++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3455553333344455566666667666533333333444444444432 235688999999999999888
Q ss_pred chhHHHHHHhCcHHHHHHhcCCC----C-cchHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHHhccCC--------
Q 009679 273 NDKIQAVIEAGVCPRLVELLRHP----S-PSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNY-------- 338 (529)
Q Consensus 273 ~~~~~~~~~~~~~~~L~~lL~~~----~-~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~-------- 338 (529)
........+......+++.+... - ..+...-++.|--+..- .+...+.+.+.++++.+-.++.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 77666677776666666665321 1 12222233333333222 2344445557788888888885421
Q ss_pred ------chhHHHHHHHHHHHHhc
Q 009679 339 ------KKSIKKEACWTISNITA 355 (529)
Q Consensus 339 ------~~~v~~~a~~~L~nl~~ 355 (529)
.-...-++..++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 11233466667777776
No 317
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.64 E-value=20 Score=35.90 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009679 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (529)
Q Consensus 307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 383 (529)
++.++...+.+.. .+...|..+|.... ++.+|...+.+|.-|---+ .+....++..++.++..++..
T Consensus 3 ~aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~ 72 (616)
T KOG2229|consen 3 VAQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKN 72 (616)
T ss_pred hhhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchh
Confidence 3444444444432 34455777775442 6788888888776654321 111223677788888888888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009679 384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 463 (529)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 463 (529)
.|+-+..-|...+.+.+.....-=....+-..+..+|+.+++.--..++..+..|.+.+-.. +
T Consensus 73 lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~-----------------d 135 (616)
T KOG2229|consen 73 LRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN-----------------D 135 (616)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc-----------------c
Confidence 87766655544443221111110011122345677888888764444455555444433222 2
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHH
Q 009679 464 AEGLEKIENLQSHDNTEIYEKAVKI 488 (529)
Q Consensus 464 ~g~~~~l~~L~~~~~~~v~~~a~~i 488 (529)
...+..+..-.-|.++.|.-.+...
T Consensus 136 ~~tV~i~~~acf~~~~ki~vs~l~F 160 (616)
T KOG2229|consen 136 SKTVNIITTACFSKVPKILVSGLRF 160 (616)
T ss_pred chhHHHHHHHHhccCcHHHHhhhHH
Confidence 2223333333567778877666553
No 318
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.61 E-value=20 Score=29.35 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=58.1
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~~l~~ 440 (529)
++..|..-|.++++.++..|+..|-.+..+++..+...+...+++..|..++.... +.|+..++..+.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999999988888888888889999999888644 3378887777776644
No 319
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=76.52 E-value=2 Score=26.41 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=23.5
Q ss_pred HHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhh
Q 009679 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKR 49 (529)
Q Consensus 11 ~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r 49 (529)
+|...||+..+..+..+ |.+...+..|.+|-+.+..-|
T Consensus 2 PR~sqYK~~~~~~~Q~e-RR~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEE-RRREFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHH-HHHHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHH-HHHHHHHHHHHHhHHHHHhcc
Confidence 57788998645444443 445566777777777766554
No 320
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.67 E-value=1.3e+02 Score=38.26 Aligned_cols=298 Identities=11% Similarity=0.050 Sum_probs=140.3
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC------hhh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SEN-TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~------~~~-~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 186 (529)
-.++.|+..+...+ +.+...+..++..+.... ++. ...-+-.++++.++++...+...-+...+..|..+..
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 46778888888777 777777777776665411 110 0000112344455555555545555555555555554
Q ss_pred CCchhHHHHHhcCChHHHHHHhccch------hHHHHHHH-HHHHhhhhcCC--CCCchhhhhchHHHHHHhhccCChHH
Q 009679 187 DSPKCRDLVLSNGALMPLLAQFNEHA------KLSMLRNA-TWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEV 257 (529)
Q Consensus 187 ~~~~~~~~~~~~~~i~~l~~~l~~~~------~~~~~~~a-~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v 257 (529)
+.+..--.-...+++.+++..+.... ........ ...+....... +.........++..++.-+.++++.|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 44311111112234555555553211 11111111 12222222211 22233344677778888888889999
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc---------CCCCcchHHHHHHHHHHhhcCCh-------hhHHHH
Q 009679 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRTVGNIVTGDD-------MQTQCI 321 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL---------~~~~~~v~~~al~~L~~l~~~~~-------~~~~~~ 321 (529)
+..+..+|.+++......+..+ +.++.+++ ....-.++...+.++..++.-.+ ......
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L-----~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~ 1217 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKL-----LEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLK 1217 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHH
Confidence 9999999999986543222212 22222222 22222233333333333332211 111100
Q ss_pred ------H---hcCChHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHH--HHHcCCHHHHHHHHhcCChhHHHH
Q 009679 322 ------I---NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQA--IIEAGIIGPLVNLLLNAEFEIKKE 387 (529)
Q Consensus 322 ------~---~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~--l~~~~~l~~L~~~l~~~~~~v~~~ 387 (529)
. +..... +.+...... ....|..+..+++......+..... -...+++..+...+....+++...
T Consensus 1218 ~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~ 1296 (3550)
T KOG0889|consen 1218 RFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEV 1296 (3550)
T ss_pred HHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHH
Confidence 0 001111 222221110 1234666666666655532221111 122347778888888888999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 009679 388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419 (529)
Q Consensus 388 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 419 (529)
+..++...... ++..-..+.+.+.=+.|..+
T Consensus 1297 ~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1297 ALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHHhhhhc-cccccHHHHHhhHHHHHHhh
Confidence 99999888764 22333444444433444444
No 321
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.64 E-value=41 Score=36.03 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=56.3
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
++..|-.++. .+..|..++..|+.++...+.+.-.+.+..+++.|+++|....+..+...|+.+|..+.-.
T Consensus 71 ~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 71 LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 3344444444 3467899999999999998989988999999999999998776777777888888877654
No 322
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=75.54 E-value=87 Score=30.89 Aligned_cols=219 Identities=14% Similarity=0.133 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHhhhhcCC---CCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHH
Q 009679 213 KLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287 (529)
Q Consensus 213 ~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 287 (529)
+..+...|+.+++.+..+. ..........++...+..+.++ +..+....+|+|+.---... ++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence 6677888888888887664 1111222233555666666433 55678888888875332221 223344444
Q ss_pred HHHhcC-----CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CC-HH
Q 009679 288 LVELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GN-VN 359 (529)
Q Consensus 288 L~~lL~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~-~~ 359 (529)
++..+. -++..+....+.++.++....+.....-.+ ..++.++..+-+. ...+|..|..++..+.. +. ..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 444432 245678889999999999876654332222 3677777777776 66777765555444432 21 11
Q ss_pred HH---HHHHHcC---------CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccCCCCHH
Q 009679 360 QI---QAIIEAG---------IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR 426 (529)
Q Consensus 360 ~~---~~l~~~~---------~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~~~ 426 (529)
.. ....+.. +.+.|..++.+++....-.=+|...-+..+.. -+.-.++ +..+.....++.++|+.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence 11 1222222 23336666666333333334444444433322 1222222 23566666788899999
Q ss_pred HHHHHHHHHHHHHH
Q 009679 427 IVTVCLEGLENILK 440 (529)
Q Consensus 427 v~~~~l~aL~~l~~ 440 (529)
++..+..+=..++.
T Consensus 290 ~k~~A~~aW~~liy 303 (372)
T PF12231_consen 290 VKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887777765
No 323
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.36 E-value=45 Score=27.49 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=54.4
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHH---HHHHHHH
Q 009679 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE---IYEKAVK 487 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~---v~~~a~~ 487 (529)
++..|..-|.+.++.++..++..|..+++.+.. .|...+....+++.|..+. ...... |++++..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-----------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-----------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-----------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-----------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 456677777889999999999999999876532 3667777777888888864 344444 8999998
Q ss_pred HHHhhCC
Q 009679 488 ILETYWV 494 (529)
Q Consensus 488 il~~~~~ 494 (529)
+|..+-.
T Consensus 112 ll~~W~~ 118 (140)
T PF00790_consen 112 LLQEWAE 118 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 324
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.22 E-value=68 Score=33.51 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=79.3
Q ss_pred hccCChHHHHHHHHHHHHhccCCchhHHHHH---HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 009679 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVI---EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 326 (529)
Q Consensus 250 l~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 326 (529)
+..-..+.+..|+-+|..+..+.......+. ...++..++..+. .++.-...++++|.|+..+ +.....+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~-- 628 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR-- 628 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--
Confidence 3344566677777777777765443222111 1235555555555 5566788899999999886 4444333321
Q ss_pred hHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc---C--ChhHHHHHHHHHHHHhcC
Q 009679 327 LPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN---A--EFEIKKEAAWAISNATSG 398 (529)
Q Consensus 327 l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~---~--~~~v~~~a~~aL~nl~~~ 398 (529)
+..+...+ ++..+..++...+....|++.. .++.--+.+..+.|...+.. . +.+..-.++.||++++..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 22222222 1221345555444444444431 00101112344444444332 2 334445567788888775
Q ss_pred CCHHHHHHHHHcCChHHHHhcc
Q 009679 399 GSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 399 ~~~~~~~~l~~~~~l~~L~~lL 420 (529)
. .....+...--+..+..-+
T Consensus 706 ~--~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 706 D--ASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred c--HHHHHHHHhcCHHHHHHHH
Confidence 3 3444444433344444443
No 325
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.82 E-value=49 Score=34.17 Aligned_cols=174 Identities=14% Similarity=0.075 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc--C--------CCChHHHHHHHHHHHHHhcCChhhHHH
Q 009679 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS--R--------DDFPQLQFEAAWALTNIASGTSENTRV 152 (529)
Q Consensus 83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~ 152 (529)
.+.++...|-..|+++... +-+..++..|..+.. . +-++.+|...+..|+.-.. ...
T Consensus 249 ~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----Aa~- 315 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----AAT- 315 (501)
T ss_pred CcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----HHh-
Confidence 3445555555555554321 223445666766665 2 1126677766666555211 000
Q ss_pred HHhCCChHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCCchhHHHHHhcCChHHHHHHhc-------cchhHHHHHHH
Q 009679 153 VIDHGAVPIFVRLLSSP--TDDVREQAVWAL---GNVAGDSPKCRDLVLSNGALMPLLAQFN-------EHAKLSMLRNA 220 (529)
Q Consensus 153 ~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~nl~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~a 220 (529)
.....+......+.+. +..++..++..+ .....+.+...-..+...+...+...+. ...+...+..+
T Consensus 316 -~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 316 -SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred -CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 0112333344445554 667877777777 5555443321111111111222222221 23467788999
Q ss_pred HHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009679 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
..+|+.|+...|..- ......+..|..-|..++++++..+-.+|+.++..
T Consensus 395 Ye~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999999998864432 22356777777778888899999988888888743
No 326
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=73.97 E-value=32 Score=35.05 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCC------------CHHHHHHHHHcCChHHHHhccCC-CC
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG------------SNEQIKFLVSQGCIKPLCDLLNC-PD 424 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~l~~L~~lL~~-~~ 424 (529)
..++-+.+.++++.|++.|... +.+++..|+..|+.++..+ .......|.....+..|++.+=. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 3444455789999999999854 7789999999988886532 13455667777777777775432 23
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009679 425 PRIVTVCLEGLENILKAG 442 (529)
Q Consensus 425 ~~v~~~~l~aL~~l~~~~ 442 (529)
......++.++..++...
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 445556666666666544
No 327
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=73.46 E-value=21 Score=28.19 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-----h-cCCCHHHHHHH
Q 009679 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA 485 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-----~-~~~~~~v~~~a 485 (529)
++..|..-|.+.++.++..+|..|..+++.+.. +|...+.....+..+..+ . ...+..|++++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-----------~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~ 106 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-----------RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA 106 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-----------HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence 455666667788999999999999999987643 356666666555555332 1 24578899999
Q ss_pred HHHHHhhC
Q 009679 486 VKILETYW 493 (529)
Q Consensus 486 ~~il~~~~ 493 (529)
..+++.+.
T Consensus 107 ~~l~~~w~ 114 (115)
T cd00197 107 IELVQLWA 114 (115)
T ss_pred HHHHHHHh
Confidence 99998764
No 328
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=71.01 E-value=45 Score=32.27 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=60.5
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK 440 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~ 440 (529)
++..+..-|...++.|...|+..+..+..++.......+....+...|..++. ..++.|....-..+.....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999998888888888888888888888 6778887776666665554
No 329
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=69.47 E-value=98 Score=28.85 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=100.0
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009679 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (529)
Q Consensus 68 ~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~ 147 (529)
..++.+..|.+.|+.+|+..+ ...+++... .+++..++|.|+..=. + +.+...++..|.+++- |
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~--P 73 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW--P 73 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC--C
Confidence 456788999999998887665 444444432 2355667787766533 4 7899999999999986 2
Q ss_pred hhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----------cchhHH
Q 009679 148 ENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----------EHAKLS 215 (529)
Q Consensus 148 ~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~----------~~~~~~ 215 (529)
-.. - ... .+...+.........+. .++..+...+++..++..+. ...+..
T Consensus 74 ~~~-------------~-~~~~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ 135 (266)
T PF04821_consen 74 IEL-------------L-VESQPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNL 135 (266)
T ss_pred HHH-------------h-ccCCCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHH
Confidence 111 0 111 12222222222222222 23444555555555555442 123455
Q ss_pred HHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC
Q 009679 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 295 (529)
+...++..+.|+..-++.+......+ .+...+...+ ..+.+.|+...|+.+..+.
T Consensus 136 ii~lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~li--------------~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 136 IIELVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQLI--------------WALFESGVLDLLLTLASSP 190 (266)
T ss_pred HHHHHHHHHHHHhcCCCCcccccccc-----------hhHHHHHHHH--------------HHHHHcCHHHHHHHHHhCc
Confidence 66666677777666532221111000 1222223232 3344557888888887765
Q ss_pred -CcchHHHHHHHHHHhhcCC
Q 009679 296 -SPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 296 -~~~v~~~al~~L~~l~~~~ 314 (529)
........+.++..+..+.
T Consensus 191 ~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 191 QESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred cccchhhHHHHHHHHHHcCC
Confidence 3334446666666666544
No 330
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.09 E-value=1.5e+02 Score=32.12 Aligned_cols=251 Identities=13% Similarity=0.116 Sum_probs=144.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009679 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (529)
Q Consensus 74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 153 (529)
-.+=++|+++-...|-+++..+-.+.... +.+ .+++. .+-.|.+.+..++ -.+|...+++...- ......+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchhh
Confidence 34555778777777778888877776543 222 34433 3445777777887 68888877776632 2222233
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009679 154 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (529)
Q Consensus 154 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 232 (529)
.. ...+..+.....+.|+.-|..++.+++.++.--| +.+..+.++..-..+.+.--.+.++.+...++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 22 2333444445566889999999999999864443 334455555543244444445566666666655431
Q ss_pred CCchhhhhchHHHHHHhhccCC--hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHH
Q 009679 233 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN 309 (529)
Q Consensus 233 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~ 309 (529)
....++.-.+..++...+ +.....++.+++.+..... ....+....+.++.. +..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 111223333444444332 4456667777777764422 112344555666543 455555667777888
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
++...-..+ .+-...+.+.++.+...-++..+.|.+.+++.
T Consensus 241 Lasrs~~ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVAI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 776332211 24567788888755466677778888877764
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.99 E-value=59 Score=26.85 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-H
Q 009679 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-L 416 (529)
Q Consensus 339 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L 416 (529)
++..-.+.|-.+.. -...+.. .+..|..-|.. .++.++..|+..|-.++.+++......+...+++.. |
T Consensus 18 dw~~ileicD~In~-~~~~~k~--------a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L 88 (141)
T cd03565 18 DWGLNMEICDIINE-TEDGPKD--------AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVL 88 (141)
T ss_pred CHHHHHHHHHHHhC-CCCcHHH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHH
Confidence 55566666666543 2221221 34445555554 588899999999999999998888888888899987 8
Q ss_pred HhccCC---CCHHHHHHHHHHHHHHHH
Q 009679 417 CDLLNC---PDPRIVTVCLEGLENILK 440 (529)
Q Consensus 417 ~~lL~~---~~~~v~~~~l~aL~~l~~ 440 (529)
+.++.. .+..|+..++..+.....
T Consensus 89 ~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 89 VKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 998863 345788888888776653
No 332
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=68.90 E-value=28 Score=27.21 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=54.8
Q ss_pred CChHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCC
Q 009679 325 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 325 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~ 399 (529)
|++..+...+.+.. +..-|+.+..++..+.......+ ..+.|.++.+|.+. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45566666665542 33558888888888876322222 12567777777764 6789999999999998877
Q ss_pred CHHHHHHHHH
Q 009679 400 SNEQIKFLVS 409 (529)
Q Consensus 400 ~~~~~~~l~~ 409 (529)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7777666654
No 333
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=68.88 E-value=60 Score=33.08 Aligned_cols=124 Identities=12% Similarity=0.132 Sum_probs=77.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-------ChHHHHHHHHHHHHHhc
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTNIAS 144 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-------~~~v~~~a~~~L~~l~~ 144 (529)
.+.++.+.+.++++..+..|+..|.. +..++. ++|.|+.++..+- +-.+....++.+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 56788888888899999888887753 233433 5678888776432 24556667777777776
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009679 145 GTSENTRVVIDHGAVPIFVRLLSS----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (529)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l 208 (529)
++...-.-.=+-++|.++.++-+ ....+|.-|+..+..++.+-...... +...++..+.+.+
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKAL 348 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Confidence 55444333334567888887643 34678888888888887544332222 2333444455544
No 334
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.56 E-value=1.2e+02 Score=29.59 Aligned_cols=220 Identities=14% Similarity=0.123 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHh
Q 009679 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (529)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 249 (529)
...-+..|...+.+...+-|...+. ++..-+.+. .+.+..+++.|..-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 4445566777777777665554333 456666777 7778889999999888888873 122333444444
Q ss_pred hc------------cCChHHHHHHHHHHHH-hccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC--
Q 009679 250 IH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-- 314 (529)
Q Consensus 250 l~------------~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~-- 314 (529)
|. ..|+.++..++..|.. +..-..+....=++..++..+...|.+-..+-....+..|+++....
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k 184 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTK 184 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCC
Confidence 43 2366666666665543 22222222222233344444555555543334445556666665432
Q ss_pred --hhhHHHHHhcCChHHHHHH--hccCCchhHHHHHHHH----HHHHhcCCHHHH-HHHHHcCCHHHHHHHHhcCChhHH
Q 009679 315 --DMQTQCIINHQALPCLLDL--LTQNYKKSIKKEACWT----ISNITAGNVNQI-QAIIEAGIIGPLVNLLLNAEFEIK 385 (529)
Q Consensus 315 --~~~~~~~~~~~~l~~L~~l--L~~~~~~~v~~~a~~~----L~nl~~~~~~~~-~~l~~~~~l~~L~~~l~~~~~~v~ 385 (529)
....+.+.. ...-+..+ +.-. +++....-..| +=-++++-|... -..+...++|.- ..-...+.+
T Consensus 185 ~~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~---fdkl~e~rk 258 (460)
T KOG2213|consen 185 AGEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH---FDKLTEERK 258 (460)
T ss_pred CCHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccc---cccchHHHH
Confidence 112222211 01111111 2222 33333222222 223444422221 112233344431 111135678
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q 009679 386 KEAAWAISNATSGGSNEQIKFL 407 (529)
Q Consensus 386 ~~a~~aL~nl~~~~~~~~~~~l 407 (529)
-..+.+|..++...+.+....+
T Consensus 259 L~lLK~lAEMss~ttaq~a~q~ 280 (460)
T KOG2213|consen 259 LDLLKALAEMSSYTTAQAARQM 280 (460)
T ss_pred HHHHHHHHHhCccchHHHHHHH
Confidence 8899999999988655555543
No 335
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=68.39 E-value=1.4e+02 Score=30.31 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 339 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
..+++..+......=+.. ......++..=+.|.++.-+ +...++..+..+.-...+...++++.+++.-++..+..
T Consensus 209 GeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sL---s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~ 284 (589)
T PF11229_consen 209 GEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSL---SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKA 284 (589)
T ss_pred cHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhh---hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Confidence 456666665433222222 23334455555666766555 45677888888888888777788888777655555555
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh----cCCCHHHHHHHHHHHHhhCC
Q 009679 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ----SHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 419 lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~----~~~~~~v~~~a~~il~~~~~ 494 (529)
.-...++++...++..|..-++.....+. .-..+ +...++|-++. ....-++|....++|..+-+
T Consensus 285 ~~~~~~~~lC~saLqGLsqAMKlP~P~~h---------~Ws~L--c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 285 ASRPSNPELCQSALQGLSQAMKLPSPAQH---------CWSLL--CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred cCCCCChHHHHHHHHHHHHHhcCCChhhH---------HHHHH--HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 44456788888888888876655432111 12222 22355565554 33445567666777776655
Q ss_pred CC
Q 009679 495 EE 496 (529)
Q Consensus 495 ~~ 496 (529)
+|
T Consensus 354 ~e 355 (589)
T PF11229_consen 354 TE 355 (589)
T ss_pred HH
Confidence 43
No 336
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=68.39 E-value=24 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=30.1
Q ss_pred HHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009679 458 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 458 ~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
.+.+...+.-..+..|..|++++|...|..++..+
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 66677777778899999999999999999998865
No 337
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.33 E-value=49 Score=32.19 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=67.9
Q ss_pred hchHHHHHHhhccC-------ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC----------CCcchHHH
Q 009679 240 RPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------PSPSVLIP 302 (529)
Q Consensus 240 ~~~l~~L~~ll~~~-------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----------~~~~v~~~ 302 (529)
..++|.++.++... +-......+..+..|..++.-..+..+. .+++.++.++-. +.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45667777666522 5667778888888888776655554444 477888777622 34578999
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh-HHHHHHHHHHHH
Q 009679 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-IKKEACWTISNI 353 (529)
Q Consensus 303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl 353 (529)
|..+|+.++......... +...+...+.+.+.++..+- ....|...|+.+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998754322211 22344445555555442332 245555555554
No 338
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.71 E-value=2e+02 Score=31.68 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=91.5
Q ss_pred hchHHHHHHhhcc-CChHHHHHHHHHHHHhccC------CchhHHHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHh
Q 009679 240 RPALPALERLIHS-NDDEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNI 310 (529)
Q Consensus 240 ~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l 310 (529)
...++.++.++.. .+++++..+...|+.++.. ++.....+...+.+..|+..+-.+. .......+..+-.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 5788999998874 4688888888888888765 3334555666677777776654422 22222222222222
Q ss_pred hcCChhhHHHHHhcC-ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHHHHHhcCChhHHH
Q 009679 311 VTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKK 386 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~~l~~~~~~v~~ 386 (529)
... .+.. +... ....+.+-.... ++.+....+.++..-. .+..+.+.+.. .++.=...+..+=...|.
T Consensus 269 l~~---~r~~-~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 269 LNP---RRDT-VETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred cCc---cccc-ccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 211 1100 0000 001111111111 3344444444433221 11222222211 112112222222335677
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009679 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 424 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 424 (529)
..+..+..+....+......+...++++.+++++....
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~ 378 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYP 378 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcc
Confidence 88888888888877777777888888878887776543
No 339
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=67.60 E-value=1.8e+02 Score=31.21 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=68.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009679 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
..|..+-.++- +.++..++..+..+...-|++-..+ +..|+.-|..+...+...|...|.+|....|..+..+
T Consensus 307 evLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv- 379 (988)
T KOG2038|consen 307 EVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV- 379 (988)
T ss_pred HHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-
Confidence 33433434444 7899999999999988777775443 5677888888888999999999999988888765443
Q ss_pred hcCChHHHHHHhc-cchhHHHHHHHHHHHhhhhcC
Q 009679 197 SNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRG 230 (529)
Q Consensus 197 ~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~ 230 (529)
+..+.+++- .+.+.....+++-+|..+...
T Consensus 380 ----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 ----IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred ----HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 334444442 223444445555555554433
No 340
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.20 E-value=59 Score=36.74 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC
Q 009679 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (529)
Q Consensus 214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 293 (529)
..++..++|+|..+..+- ........+..+.+++..+..+++...+..+.+......+....+ -.-+++..+..|.
T Consensus 143 apVre~caq~L~~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~-~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQL-LNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhh
Confidence 367788888888877653 222335566777777777767776666666665443211111111 1145677778888
Q ss_pred CCCcchHHHHHHHHHHhhcCChhhH---HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH----HH
Q 009679 294 HPSPSVLIPALRTVGNIVTGDDMQT---QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI----IE 366 (529)
Q Consensus 294 ~~~~~v~~~al~~L~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l----~~ 366 (529)
+.+..++..|...+.-++....... -..+-+-+...+..+..-. .. .......+..++.. .+..... ..
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~-~s--~~si~~ll~~l~~~-~evl~l~~~~n~~ 294 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLS-SS--TASIMHLLDELCIE-NEVLDLFEQQNLE 294 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcc-hh--hHHHHHHHHHHhhh-HHHHHHHHHhhhh
Confidence 8888888888888776665331111 1111122233333333211 10 01111222233332 1111111 12
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 367 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
.|++|.+...+.+.=..++..++..+..+....
T Consensus 295 ~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 295 VGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888776678888888888887643
No 341
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=66.76 E-value=32 Score=26.83 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=55.1
Q ss_pred CChHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCC
Q 009679 325 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 325 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~ 399 (529)
|++..+-..+.+ ..+...|+.+...++.+..-....+. .+.|.++.+|... .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555555 33667788999999988873233332 2566777777764 5589999999999998877
Q ss_pred CHHHHHHHHH
Q 009679 400 SNEQIKFLVS 409 (529)
Q Consensus 400 ~~~~~~~l~~ 409 (529)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7777666554
No 342
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=66.09 E-value=1.3e+02 Score=28.96 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-Hhc---cCCchhHHH-HHHHHHHHHh----cCCHHHHHHHHHcCC
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLT---QNYKKSIKK-EACWTISNIT----AGNVNQIQAIIEAGI 369 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~---~~~~~~v~~-~a~~~L~nl~----~~~~~~~~~l~~~~~ 369 (529)
++...+..+.......+.... +....+|.++. +|. .. .+..|. ++..+++.++ ....+....+++. +
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 566777777777765543222 33456677666 332 12 233332 3333333333 3223334445543 6
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009679 370 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439 (529)
Q Consensus 370 l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~ 439 (529)
+...+.++..+ -|+.|..-...|.++...+ +++..+. ++..++-.+++.++++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 66777777664 4688877777777776543 2222222 3556677778999999999999999999
Q ss_pred HhhhhhhhcCCCCccchHHHHHHhhchHHHHHH----HhcCCCHHHHHHHHHHHHhhCCC
Q 009679 440 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN----LQSHDNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~----L~~~~~~~v~~~a~~il~~~~~~ 495 (529)
....+.. ..+...|-+.-.++.+.. +....+......-..+|..+|.-
T Consensus 194 ~~~~~~~--------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 194 NNVSKTN--------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHH-S--------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 8766511 113333433444444443 34555555556666788888853
No 343
>PLN03205 ATR interacting protein; Provisional
Probab=65.46 E-value=1.4e+02 Score=29.19 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=91.3
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcH---HHHHHh-cCCCCcchHHHHHHHHHHhhc
Q 009679 240 RPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVC---PRLVEL-LRHPSPSVLIPALRTVGNIVT 312 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~---~~L~~l-L~~~~~~v~~~al~~L~~l~~ 312 (529)
..++..|+.+..-++..+...+++.|..+..+ +..+.+.-.+.+.+ +.+.++ ..+....++..|+.++.-+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 34555666666666666666666665544321 12222323333332 222232 234567788999999888877
Q ss_pred CChhh--HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------H---
Q 009679 313 GDDMQ--TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---------------------E--- 366 (529)
Q Consensus 313 ~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~--- 366 (529)
.++.. +..+....+++.+.++|+.+.-..|+++|...|--+.-. |.....+. .
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHHHH
Confidence 66544 334445577888999997765677888887654432211 11100000 0
Q ss_pred cCCHHHHHHHHhcC-----ChhHHHHHHHHHHHHhcCCC
Q 009679 367 AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 367 ~~~l~~L~~~l~~~-----~~~v~~~a~~aL~nl~~~~~ 400 (529)
..++..|-+++... +.++++.++..|..++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11455566666543 56788999999998887663
No 344
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.25 E-value=77 Score=26.09 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=52.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHH---HHHHHHHHHhhhhcC
Q 009679 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRG 230 (529)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~---~~~~a~~~L~~l~~~ 230 (529)
++..|.+-|.++++.++..|+..|-.+...+ +.++..+....++..+..++....... ++..+...+......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3567778888899999999999998888654 566777777778888888875443332 777777666555443
No 345
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=64.62 E-value=1.3e+02 Score=28.68 Aligned_cols=145 Identities=9% Similarity=0.055 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHhccCCchhHHHHHHh-----------CcHHHHHHhcC------CCCcchHHHHHHHHHHhhcCChh
Q 009679 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVCPRLVELLR------HPSPSVLIPALRTVGNIVTGDDM 316 (529)
Q Consensus 254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~~ 316 (529)
.-++|..++.++.....++++....+++. .....|+..|- ..++--...|+.+|..+...++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45678888888887776655554445432 01112444443 22333455788899999988887
Q ss_pred hHHHHHhc------------CChHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC-CHHHHHHHHhc
Q 009679 317 QTQCIINH------------QALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAG-IIGPLVNLLLN 379 (529)
Q Consensus 317 ~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~-~l~~L~~~l~~ 379 (529)
....+..- ..++.+..+|.. ..+++++..-...|+-...+++..+..++..+ .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 76665421 235556665543 33667777777777777788899999998654 68889887543
Q ss_pred ---CChhHHHHHHHHHHHHhcC
Q 009679 380 ---AEFEIKKEAAWAISNATSG 398 (529)
Q Consensus 380 ---~~~~v~~~a~~aL~nl~~~ 398 (529)
.+.-|+.-++..|+-+...
T Consensus 211 ~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCcchHHHHHHHHHHHHHHh
Confidence 2566777777777766553
No 346
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.32 E-value=40 Score=27.67 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=42.7
Q ss_pred chHHHHHHhhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009679 241 PALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (529)
Q Consensus 241 ~~l~~L~~ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L 307 (529)
.++..+.+.+.... .++...++.++.......+ ...+...++++.++.+|.++ ..+..|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 34444444444322 7788889999988776543 45677778999999999544 4588888775
No 347
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=63.76 E-value=12 Score=21.08 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHh
Q 009679 341 SIKKEACWTISNIT 354 (529)
Q Consensus 341 ~v~~~a~~~L~nl~ 354 (529)
.+|.+|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999983
No 348
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=63.10 E-value=21 Score=23.59 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 009679 458 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETY 492 (529)
Q Consensus 458 ~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~ 492 (529)
.+.+.+.|.-..+..|..| ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6677888888899999888 9999999999999875
No 349
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=62.82 E-value=42 Score=26.44 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=52.0
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc-----c-CCCCHHHHHHHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL-----L-NCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-----L-~~~~~~v~~~~l~aL~~l 438 (529)
++..|..-|.+.++.++..|+..|-.++.++++.+...+....++..++.. . ...+..|+..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666667788999999999999999999998888888777666666542 1 124567888877766543
No 350
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=62.79 E-value=70 Score=27.27 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhcCCC-----CC---hhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hC
Q 009679 86 NIQLDATTQFRKLLSIER-----SP---PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-DH 156 (529)
Q Consensus 86 ~~~~~a~~~l~~lls~~~-----~~---~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~ 156 (529)
..+.-++..+..++...+ .+ ....++...+.+.|++.+.+++ +.+-..+++++..+... .+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444555666655554321 12 3455667778889999988877 88989999999998862 222222 11
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 009679 157 G-AVPIFVR-LLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (529)
Q Consensus 157 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 199 (529)
+ .++.++. ++.+++ ...|+.++.++..++.++.-..+.....+
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYD 159 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYD 159 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcC
Confidence 2 2344444 566533 56888899999999987765555554433
No 351
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.33 E-value=1.9e+02 Score=32.43 Aligned_cols=261 Identities=15% Similarity=0.107 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC---
Q 009679 92 TTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--- 168 (529)
Q Consensus 92 ~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--- 168 (529)
..+|..++.+. .++.+.+.+..++..++.++-+ .+-|...++++..+...++.+.. ..-+-.++..|++
T Consensus 663 wDcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcce
Confidence 34555555543 4556666777777777777733 34566666666666654444211 1112334444433
Q ss_pred -----C----CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh
Q 009679 169 -----P----TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (529)
Q Consensus 169 -----~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 239 (529)
. ...+....+.+++.+.+.+...+..+-+.++...|+..|..- .......+..+....
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtf-------------qgftelhdesDlcvy 801 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTF-------------QGFTELHDESDLCVY 801 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHh-------------ccchhcCCchhhhhH
Confidence 1 123445566777777766666677777888877777766210 000000011111111
Q ss_pred hchHHHHHHhhc---cC--------ChHHHHHHHHHHHH----hccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHH
Q 009679 240 RPALPALERLIH---SN--------DDEVLTDACWALSY----LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304 (529)
Q Consensus 240 ~~~l~~L~~ll~---~~--------d~~v~~~a~~~L~~----l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al 304 (529)
-..+..+.+++. .. ...+..+....|.. ++-+. + ..++. -+.+.-.+.+.++.-.--..||
T Consensus 802 iklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnl-e--r~viq-lllElalevlvppfLtSEsaAc 877 (2799)
T KOG1788|consen 802 IKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNL-E--RHVIQ-LLLELALEVLVPPFLTSESAAC 877 (2799)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecc-h--HHHHH-HHHHHHHHhhCCchhhhhHHHH
Confidence 112222222211 00 01111111111111 11111 1 00110 1112222333333322223344
Q ss_pred HHHHHhhc---------C-ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 009679 305 RTVGNIVT---------G-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (529)
Q Consensus 305 ~~L~~l~~---------~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 374 (529)
..+-.+-. + .....+.+..+|++..++..+-.. .++.+.+-...+..+++.++.....+-..|+++.|+
T Consensus 878 aeVfelednifavntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfnaelltS~gcvelll 956 (2799)
T KOG1788|consen 878 AEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLL 956 (2799)
T ss_pred HHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHH
Confidence 43332211 1 112345577889999999988777 788999999999999998788777676778888887
Q ss_pred HHHh
Q 009679 375 NLLL 378 (529)
Q Consensus 375 ~~l~ 378 (529)
+++.
T Consensus 957 eIiy 960 (2799)
T KOG1788|consen 957 EIIY 960 (2799)
T ss_pred HHhh
Confidence 7654
No 352
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=61.87 E-value=59 Score=27.02 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=50.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009679 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 243 l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
...|+.+|..+...-....+..|.+=..-..+. ...++.+++..++.-=.....--...|+..||.|..|..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 345556666544332333344444322211111 224444554444443222233346678888888876543
Q ss_pred hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009679 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (529)
Q Consensus 323 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 355 (529)
+..|+.+|.+. +..+...|+.+|++..-
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 56789999888 88999999999998665
No 353
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=60.85 E-value=1.4e+02 Score=27.74 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhcCC---------------CHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHh
Q 009679 382 FEIKKEAAWAISNATSGG---------------SNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKA 441 (529)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~---------------~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~ 441 (529)
..+.+.++..+.|+.... ....+..|..+|+...|+.+..+. ..+....+++++..+++.
T Consensus 134 ~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 345556666666666441 123445667789999999988875 334445778888877754
No 354
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.70 E-value=45 Score=24.75 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=45.8
Q ss_pred HcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHH---HHhcCCCHHHHHH
Q 009679 409 SQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE---NLQSHDNTEIYEK 484 (529)
Q Consensus 409 ~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~---~L~~~~~~~v~~~ 484 (529)
+..++.++..++. ..+.+++..++.++..++.... ..+ ..|+...+. .-..++++++...
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---------------~~i-~SGW~~if~il~~aa~~~~e~lv~~ 78 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---------------ENI-KSGWKVIFSILRAAAKDNDESLVRL 78 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---------------HHH-HhccHHHHHHHHHHHhCCCccHHHH
Confidence 4456778888754 5688999999999999987542 222 355444433 3356677888888
Q ss_pred HHHHHH
Q 009679 485 AVKILE 490 (529)
Q Consensus 485 a~~il~ 490 (529)
|..+++
T Consensus 79 af~~~~ 84 (86)
T PF09324_consen 79 AFQIVQ 84 (86)
T ss_pred HHHHHh
Confidence 888775
No 355
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.33 E-value=72 Score=34.84 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcC-----CCHHHHHHHHHcCChHHHHhc-cC
Q 009679 358 VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDL-LN 421 (529)
Q Consensus 358 ~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~l-L~ 421 (529)
...++.+-+..+++.+++++... +++++..|...|+.+++. +.....+.|.....+..|+.. |+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 45556666778999999999875 789999999999999988 666677888877778777664 44
No 356
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.29 E-value=2.4e+02 Score=31.73 Aligned_cols=135 Identities=7% Similarity=-0.014 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009679 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418 (529)
Q Consensus 339 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ 418 (529)
.+.+|..++..|+-.+..-|+ .+++...+..+-..|.+.+..||..++.+|-.+.........-.+.-...-..+++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 788999999888887776565 45666788888888999999999999999999987632111122222334556666
Q ss_pred cc-CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 419 LL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 419 lL-~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
+. .+.+..|+...+..+..... ..++. ..-+..+..|..+.++.++..|...+..-+.
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~-----------------~g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~ 435 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSS-----------------SGLLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKLF 435 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhc-----------------ccccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHhh
Confidence 66 34455555554433322211 11122 1225678888999999998888666655443
No 357
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=60.09 E-value=43 Score=24.15 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=30.2
Q ss_pred HHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009679 458 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492 (529)
Q Consensus 458 ~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~ 492 (529)
.+.+.+.+.-..+..|..|++++|+..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56777788778899999999999999999998865
No 358
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.98 E-value=1.9e+02 Score=29.65 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred CHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhc-CCCCccchHHHHHHhhchHHHHHHHhc
Q 009679 400 SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNM-GNTGGVNLFAQAIDDAEGLEKIENLQS 475 (529)
Q Consensus 400 ~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~g~~~~l~~L~~ 475 (529)
.......|.+.++++.|+++|+ ..++++...+...|..|+..+...... ....+.|+....+.....+++|....-
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 3466778888999999999997 456788899999999998776543221 122356889999998888888887643
No 359
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.56 E-value=16 Score=27.21 Aligned_cols=67 Identities=9% Similarity=0.154 Sum_probs=43.4
Q ss_pred HhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh----ccCChHHHHHHHHHHH
Q 009679 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALS 266 (529)
Q Consensus 196 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~d~~v~~~a~~~L~ 266 (529)
.+..++.|+..++....+.+++...+.++.++..... ..+..+-+.+...+ .++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3445678888887677788999999999999887642 22233344444443 3456666666665543
No 360
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.43 E-value=53 Score=35.54 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=93.3
Q ss_pred ChhhHHhhcCChHHHHHhhcCCCC-------hHHHHHHHHHHHHHhcCChhhHHHHHhC--------CChHHHHHhhCC-
Q 009679 105 PPINEVIQSGVVPRFIEFLSRDDF-------PQLQFEAAWALTNIASGTSENTRVVIDH--------GAVPIFVRLLSS- 168 (529)
Q Consensus 105 ~~~~~~i~~g~i~~Li~lL~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 168 (529)
++...+...+.+..++++...+-+ .++...|+.+|+-+.. -|+.+..++.. .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 345556666777777777654321 2556667777766666 56666555431 134444443322
Q ss_pred ---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchH
Q 009679 169 ---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (529)
Q Consensus 169 ---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 243 (529)
.+++++..|+.+|-|.....|.++...+..-.- ..=-..+...+......+.+.-+++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 479999999999999887776665443221000 00000111222233444555555555544 4678
Q ss_pred HHHHHhhccC-----ChHHHHHHHHHHHHhccCCc
Q 009679 244 PALERLIHSN-----DDEVLTDACWALSYLSDGTN 273 (529)
Q Consensus 244 ~~L~~ll~~~-----d~~v~~~a~~~L~~l~~~~~ 273 (529)
..|+++|+.. -..++.-||.+|.-|+..+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 8888888743 35688999999999988764
No 361
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=59.42 E-value=1.5e+02 Score=28.90 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=68.6
Q ss_pred ChHHHHHHhccc-----h-hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc----------CChHHHHHHHH
Q 009679 200 ALMPLLAQFNEH-----A-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------NDDEVLTDACW 263 (529)
Q Consensus 200 ~i~~l~~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~ 263 (529)
.+|.++.++... . +.......+.++..|..+..-....+...++|.++.++-. ++..+|..+..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666321 1 4666777778888888876555556677888888876631 23578999999
Q ss_pred HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc--chHHHHHHHHHHhh
Q 009679 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP--SVLIPALRTVGNIV 311 (529)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~v~~~al~~L~~l~ 311 (529)
.+..++........ -+...++..+.+.+.++.. .....|+..|+.+.
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 99999854332222 1233455566666655432 23555666666553
No 362
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.11 E-value=3.2e+02 Score=30.83 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=58.3
Q ss_pred HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC---CCCHHHHHHHHHHHHH
Q 009679 361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLEN 437 (529)
Q Consensus 361 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~~l~aL~~ 437 (529)
.+.+.++|.+..+++.+-...++++.+-+..+..+++. ++.....+-..|+++.|++++. ++.......++.++..
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45677899999999998888899999999999999876 4466666677799988888764 3444555555555554
Q ss_pred HH
Q 009679 438 IL 439 (529)
Q Consensus 438 l~ 439 (529)
+.
T Consensus 980 Lg 981 (2799)
T KOG1788|consen 980 LG 981 (2799)
T ss_pred Hh
Confidence 43
No 363
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.93 E-value=95 Score=30.40 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=78.4
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 406 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (529)
+.-|+..+++. +..+|+.|...|-.+....+.....-. ..+++.+..+..+.+..+|......+-.+.....++....
T Consensus 60 lkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 55677888888 999999999999887765455443222 2367788888888888999999999888776544444222
Q ss_pred HHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009679 407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 407 l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
++. =+++++...+..-.++++.-++..|..++...
T Consensus 138 ~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 211 12445555556677888888888888777655
No 364
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.58 E-value=41 Score=27.81 Aligned_cols=74 Identities=7% Similarity=0.017 Sum_probs=53.9
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHH-HHHhhcCCC--ChHHHHHHHHHHHHHhc
Q 009679 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRDD--FPQLQFEAAWALTNIAS 144 (529)
Q Consensus 71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~-Li~lL~~~~--~~~v~~~a~~~L~~l~~ 144 (529)
+.+..+.+.|+ +.++.++..|+..|-.+..+-......++....++.. |++++.... ...++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 35677777787 4688888889888888876654455566777788887 888886322 14788888888877765
No 365
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.38 E-value=61 Score=32.80 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=69.0
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH
Q 009679 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 414 (529)
Q Consensus 335 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 414 (529)
..+ ++.+-.+.|-.|..--.+.++ ++..|-.-+.+..+.++..|+..|--|+.+|+..+-..+.+.+++.
T Consensus 15 ~~p-DWa~NleIcD~IN~~~~~~~e---------AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 15 AEP-DWALNLEICDLINSTEGGPKE---------AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred cCc-cHHHHHHHHHHHhcCccCcHH---------HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344 666666666555443334333 4556666778888899999999999999988877777888899999
Q ss_pred HHHhccCCC--CHHHHHHHHHHHHHHH
Q 009679 415 PLCDLLNCP--DPRIVTVCLEGLENIL 439 (529)
Q Consensus 415 ~L~~lL~~~--~~~v~~~~l~aL~~l~ 439 (529)
-++.+.+.. +..|+..++..|...-
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHH
Confidence 999888754 6678888888777553
No 366
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.15 E-value=2.6e+02 Score=29.53 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q 009679 129 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (529)
Q Consensus 129 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~ 205 (529)
++.+.-|+.+|.-+..+.+..-..+- .+..+..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57788888888887774433322222 1234445555554 4567778899999999877 4456665543 33333
Q ss_pred HHhc---cchhHHHHHHHHHHHhhhhc--CCCCCchhhhhchHHHHHHhhc-----cCChHHHHHHHHHHHHhccCCchh
Q 009679 206 AQFN---EHAKLSMLRNATWTLSNFCR--GKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLSDGTNDK 275 (529)
Q Consensus 206 ~~l~---~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~L~~l~~~~~~~ 275 (529)
..+. ...+..++....-...|++- ...... .+..+.+...+. .+|-+....++.+|++|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 3221 11222333322222222221 111111 122233333222 124445667778888888766443
Q ss_pred HHHHHHhCcHHHHHHhcC
Q 009679 276 IQAVIEAGVCPRLVELLR 293 (529)
Q Consensus 276 ~~~~~~~~~~~~L~~lL~ 293 (529)
.+ +...--+..++.-++
T Consensus 710 ~~-~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 710 IQ-LAKNRSVDSIAKKLK 726 (745)
T ss_pred HH-HHHhcCHHHHHHHHH
Confidence 33 333333445554443
No 367
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=56.88 E-value=56 Score=27.17 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=80.0
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009679 146 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (529)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 222 (529)
+++.-+.+.+..++..+++.+.. ....++.+.+.+++-+.. .++..-..++..+.+..++..-.+-.+.++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 34556677788889999999887 677888888888777652 222233456677777777776545567778877777
Q ss_pred HHhhhhcCCCCCc--hhh-----hhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009679 223 TLSNFCRGKPQPL--FEQ-----TRPALPALERLIHSNDDEVLTDACWALSYL 268 (529)
Q Consensus 223 ~L~~l~~~~~~~~--~~~-----~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l 268 (529)
.|..++..-.... .-. .-++...-+++..++|.-++..+-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 7777765431111 111 123444455677788888888777666554
No 368
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=56.57 E-value=48 Score=31.36 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCH-HHHHHHHHcCChHHHHhccCCC---CHHHHHHHHHHHHHHHH
Q 009679 367 AGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILK 440 (529)
Q Consensus 367 ~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~---~~~v~~~~l~aL~~l~~ 440 (529)
.|++..+++.+... +...|-..+.|+-.+.++.++ ....++.+.|+++.|+..+-++ +..+.....+.|+.+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56778888877754 667889999999999999887 5667889999999999866543 34688889999999998
Q ss_pred hhhh
Q 009679 441 AGEA 444 (529)
Q Consensus 441 ~~~~ 444 (529)
....
T Consensus 174 ~n~~ 177 (303)
T PF12463_consen 174 FNRD 177 (303)
T ss_pred CCHH
Confidence 7654
No 369
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.51 E-value=1.3e+02 Score=26.54 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=78.9
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHH-HHHHHHhhcCChhhHHHH
Q 009679 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPA-LRTVGNIVTGDDMQTQCI 321 (529)
Q Consensus 244 ~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a-l~~L~~l~~~~~~~~~~~ 321 (529)
..+..+..++..+.+..++..+.......+. ..++.+-.++.. +++.+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 3444566666677777777666553322111 123445555544 344444443 44455554311
Q ss_pred HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCH
Q 009679 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (529)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (529)
....+.+...+.++ +.-+|+.++-++......... . .++..+...+.+++..|+..+.|+|..+.... +
T Consensus 119 --~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~~--~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~-~ 187 (213)
T PF08713_consen 119 --PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKEDF--D-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKD-P 187 (213)
T ss_dssp --GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCHH--H-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--H
T ss_pred --HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcCH--H-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC-H
Confidence 24567788888888 888888887666655544111 1 13344445567778899999999999998874 4
Q ss_pred HHHHHH
Q 009679 402 EQIKFL 407 (529)
Q Consensus 402 ~~~~~l 407 (529)
+....+
T Consensus 188 ~~v~~~ 193 (213)
T PF08713_consen 188 DEVLEF 193 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 370
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.42 E-value=13 Score=28.90 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHH
Q 009679 387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429 (529)
Q Consensus 387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~ 429 (529)
+.+..+..++. .|+....|++.|++..|+.||.+++.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45666777776 568899999999999999999999988754
No 371
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.06 E-value=13 Score=28.77 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 009679 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175 (529)
Q Consensus 133 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~ 175 (529)
...+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455667777777 788888899999999999999998877643
No 372
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.71 E-value=1.3e+02 Score=29.41 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=87.7
Q ss_pred cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHH
Q 009679 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQ 362 (529)
Q Consensus 284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 362 (529)
-+.-|+.-+.+.+..++..|+.-|-.+....+.....- -..+++.+..++.+. +..+|.....++-.+... .++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 35567777888999999999999988877644333221 235667777777777 888999988888876652 233322
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009679 363 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 420 (529)
Q Consensus 363 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL 420 (529)
.++. =+++.+...|.+-.+.++..+...+..++....+....+... +++-+.+++
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 2222 145666666667788999999999999988766555554433 344444433
No 373
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=52.98 E-value=1.6e+02 Score=25.97 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=84.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHHH
Q 009679 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDL 194 (529)
Q Consensus 117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~ 194 (529)
..+..+..++. .+.+..|+.++.......... .++.+-.++.. .+..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34556667777 788888888776644311111 34556666665 566666655 44455543211
Q ss_pred HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009679 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (529)
Q Consensus 195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~ 274 (529)
....+.+...+ .+.++=.++.++-++...... .....++..+...+.+++.-|+..+.|+|..++...++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11233444445 666777777776555544433 22345556666777788999999999999999988777
Q ss_pred hHHHHHHh
Q 009679 275 KIQAVIEA 282 (529)
Q Consensus 275 ~~~~~~~~ 282 (529)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 374
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=52.88 E-value=1.2e+02 Score=30.80 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009679 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (529)
Q Consensus 85 ~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (529)
...|..|+.+|..+++.-..+....+.+ +.|..+|++.. ..-|..|+-++...+...........-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4567889999999887643333333322 26889999887 677888888888888743322111001123466677
Q ss_pred hhCC
Q 009679 165 LLSS 168 (529)
Q Consensus 165 lL~~ 168 (529)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7763
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.88 E-value=47 Score=36.21 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=68.8
Q ss_pred hhchHHHHHHhhccCChHHHHHHHHHHHHhc----cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009679 239 TRPALPALERLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 314 (529)
+..++.....+|.+++-.++..++.++.... .+++.... .+. ..-+.++..+...++-+...|+.++.+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3556666778888899999999999887543 34333222 222 56688999999999999999999999999877
Q ss_pred hhhHHHHHhcCChHHHHHHhcc
Q 009679 315 DMQTQCIINHQALPCLLDLLTQ 336 (529)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~lL~~ 336 (529)
......=+-..++|.+-.++.+
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6555443434677777766644
No 376
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=50.35 E-value=9.8 Score=33.79 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=36.8
Q ss_pred HHHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcc
Q 009679 10 EVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL 53 (529)
Q Consensus 10 ~~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~ 53 (529)
..|...||+..+..|.|.||.+...++.|.+|-+...+-|+...
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 47889999965667888888777999999999999999887654
No 377
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.29 E-value=3.8e+02 Score=29.44 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 009679 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331 (529)
Q Consensus 257 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 331 (529)
..+.++..+-.++.+...... ..++++++...+ .++.....+...+|.++..-.+... .-.-.++.|+
T Consensus 483 ~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~--~ln~sl~~L~ 555 (982)
T KOG2022|consen 483 RTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM--YLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc--ccCchHHHHH
Confidence 344555555555544332222 346777776533 3677777888888877653222211 1124677888
Q ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 009679 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLV 408 (529)
Q Consensus 332 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~ 408 (529)
+-|..+ +.-..+...|..+|...++......+ +++..+-..+... .+..+..+..+++.+...-.+ +..+++.
T Consensus 556 ~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~ 631 (982)
T KOG2022|consen 556 QGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLM 631 (982)
T ss_pred HHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHH
Confidence 888544 44556666788888876665544443 3555555555544 445777888888888765443 3445544
No 378
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.20 E-value=3e+02 Score=28.35 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----c---hhHHHHHHHHHHHhhhhcCCCCC
Q 009679 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----H---AKLSMLRNATWTLSNFCRGKPQP 234 (529)
Q Consensus 162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~----~---~~~~~~~~a~~~L~~l~~~~~~~ 234 (529)
+.+.+.+.++..+..|+..|.. |. .... .++.++.++.. + .+.....++...++.|..+..-.
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3344444566666665555443 22 1211 35556666532 2 45677778888888888886555
Q ss_pred chhhhhchHHHHHHhhcc----------CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHH
Q 009679 235 LFEQTRPALPALERLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIP 302 (529)
Q Consensus 235 ~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~ 302 (529)
...++..++|.++.++-+ +...++.-+...+..++..-...... +...++..+.+.+.++ ......-
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 556677888887766542 23457888888999888765544443 4446677777777654 2344455
Q ss_pred HHHHHHHhh
Q 009679 303 ALRTVGNIV 311 (529)
Q Consensus 303 al~~L~~l~ 311 (529)
|+..|..+.
T Consensus 361 ai~gL~~lg 369 (576)
T KOG2549|consen 361 AIAGLSELG 369 (576)
T ss_pred HHHHHHHhh
Confidence 555555554
No 379
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=50.17 E-value=1.1e+02 Score=24.52 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=57.8
Q ss_pred cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc---CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccc
Q 009679 379 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVN 455 (529)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL---~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~ 455 (529)
+++...-.....-|+..+... ..+.. ++..|..-| +..++.++-.+|..|..|+..|...
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~---------- 76 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER---------- 76 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------
T ss_pred CCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------
Confidence 334455556667777777653 44443 345566665 5677888999999999999887543
Q ss_pred hHHHHHHhh-chHHHHHHHhc-C-----CCHHHHHHHHHHHHhhCCC
Q 009679 456 LFAQAIDDA-EGLEKIENLQS-H-----DNTEIYEKAVKILETYWVE 495 (529)
Q Consensus 456 ~~~~~i~~~-g~~~~l~~L~~-~-----~~~~v~~~a~~il~~~~~~ 495 (529)
+..-+.+. ..+..+..+.. + ....|+++|..+++-+.+.
T Consensus 77 -~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 -FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp -HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred -HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 34444222 23333333332 1 1135999999999877653
No 380
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.92 E-value=74 Score=32.24 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=54.7
Q ss_pred ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-hcC-CCHHHHHHHHHHH
Q 009679 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSH-DNTEIYEKAVKIL 489 (529)
Q Consensus 412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-~~~-~~~~v~~~a~~il 489 (529)
++..|..-+...++.++..+|..|..+++.+... |...+.+.++++....+ -++ .+..|++++..+|
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~-----------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS-----------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 4556666677778888888888888888766432 56677777777766655 455 6788999999999
Q ss_pred HhhCCCCC
Q 009679 490 ETYWVEED 497 (529)
Q Consensus 490 ~~~~~~~~ 497 (529)
+.+...-.
T Consensus 108 ~~W~~af~ 115 (470)
T KOG1087|consen 108 DTWQQAFC 115 (470)
T ss_pred HHHHHHcc
Confidence 98765443
No 381
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.45 E-value=3.4e+02 Score=28.02 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009679 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (529)
Q Consensus 299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 378 (529)
+...|+.-.+-++.+.+-..+. ++..+-.++... ++.+|+..-.+.+-+...+|.. +++..|-+...
T Consensus 620 ie~~a~Lg~AliamGedig~eM-----vlRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~sh 686 (881)
T COG5110 620 IESLALLGCALIAMGEDIGSEM-----VLRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSH 686 (881)
T ss_pred HHHHHHhhhHHhhhcchhhHHH-----HHHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhcc
Confidence 3334444455556665544433 234455666666 8889998888888887776653 26677777777
Q ss_pred cCChhHHHHHHHHHHHHhcCC
Q 009679 379 NAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~ 399 (529)
+++.++...++.+++-+-.+.
T Consensus 687 d~dl~v~~ntIfamGLiGAGT 707 (881)
T COG5110 687 DGDLNVIINTIFAMGLIGAGT 707 (881)
T ss_pred ccchhHHHHHHHHhhccccCc
Confidence 888889888888888776553
No 382
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=46.82 E-value=21 Score=29.64 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHH
Q 009679 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAW 390 (529)
Q Consensus 314 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~ 390 (529)
++..-+.+.+.+++..+.++++......++.....+++-+.. .++...-++...+.+..++..- .-.+.++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 345566677889999999999885477888888888876665 3445555666777777776653 3347788888888
Q ss_pred HHHHHhcCCCHHHHHHHHH--cCChHHHHh---ccCCCCHHHHHHHHHHHHHH
Q 009679 391 AISNATSGGSNEQIKFLVS--QGCIKPLCD---LLNCPDPRIVTVCLEGLENI 438 (529)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~--~~~l~~L~~---lL~~~~~~v~~~~l~aL~~l 438 (529)
.|..++..-+++....+.. .+-.|.+.. +..++|+-++.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888887665555555543 234555544 44567776766655544443
No 383
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.77 E-value=1.2e+02 Score=24.70 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHH
Q 009679 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 139 (529)
Q Consensus 85 ~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L 139 (529)
......++.++...++ -.+...+.+.++++.+.++|.++ .++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 7888899999999886 35567777888999999999554 5688888876
No 384
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=46.65 E-value=2.6e+02 Score=26.54 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred hchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCch-hH-HHHHHhCcHHHHHHhcCCCC---cchHHHHHHHHHHhhc
Q 009679 240 RPALPALERLIHSN--DDEVLTDACWALSYLSDGTND-KI-QAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVT 312 (529)
Q Consensus 240 ~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~~-~~-~~~~~~~~~~~L~~lL~~~~---~~v~~~al~~L~~l~~ 312 (529)
.+.+..+++.+... +...+.....|+-.+..+.+. .. ..+.+.|+++.++.-+-++. ..+...+...||-+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56777777666533 667788888888888877655 23 35777899999998876543 3578889999999999
Q ss_pred CChhhH
Q 009679 313 GDDMQT 318 (529)
Q Consensus 313 ~~~~~~ 318 (529)
++....
T Consensus 174 ~n~~~f 179 (303)
T PF12463_consen 174 FNRDAF 179 (303)
T ss_pred CCHHHH
Confidence 876443
No 385
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=46.60 E-value=3e+02 Score=27.09 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009679 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (529)
Q Consensus 297 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 356 (529)
..-...|...+.+...+.+.... ..+..-+.+..+. +..||..|..-|--+|.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 34566788888888877766554 3445566777777 888999999988888876
No 386
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=45.55 E-value=2.9e+02 Score=26.72 Aligned_cols=194 Identities=10% Similarity=0.059 Sum_probs=95.3
Q ss_pred CChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhHH
Q 009679 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 277 (529)
Q Consensus 199 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~~ 277 (529)
.++..+..++.+..++......+.++..=+..- ....-..++..+.+-+.+..+.+|..-+.+++.+... ......
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 356667777766677777666666655322221 1112256777888888888887888888777777641 111111
Q ss_pred HHHHhCcHHHHHHhcC----CCCcchH----HHHHHHHHHhhcCChhhHHH-------HH-hc--C--ChHHHHHHhccC
Q 009679 278 AVIEAGVCPRLVELLR----HPSPSVL----IPALRTVGNIVTGDDMQTQC-------II-NH--Q--ALPCLLDLLTQN 337 (529)
Q Consensus 278 ~~~~~~~~~~L~~lL~----~~~~~v~----~~al~~L~~l~~~~~~~~~~-------~~-~~--~--~l~~L~~lL~~~ 337 (529)
.++. .+++.|+..+. ++..... ..|.-.+. +.......... +. +. . .-+.+..-+ .
T Consensus 99 ~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 99 KFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 1222 46677777663 3322211 12222222 11111111000 00 00 0 001111111 1
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCC
Q 009679 338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS 400 (529)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~ 400 (529)
+.+-....+.++..+..+.++....-....+-..++.++-+. .+++|+.|..++..+.....
T Consensus 175 -~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 -SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred -CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 223333344444444433222111111122456677777777 88999999999999987643
No 387
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=44.90 E-value=3.2e+02 Score=27.03 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=54.0
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 226 (529)
+...+..++...+-.|+.+++++++.-|+..-.+|.++.+.-..+|..+. .+.-..+++.+.....-.-....+..|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 55566677888899999999999999999999999998764444444332 23333445555333222234445566666
Q ss_pred hhcCC
Q 009679 227 FCRGK 231 (529)
Q Consensus 227 l~~~~ 231 (529)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 66554
No 388
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.45 E-value=94 Score=30.03 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=41.6
Q ss_pred hhhHHhhcC--ChHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHH------HhCCChHHHHHh
Q 009679 106 PINEVIQSG--VVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVV------IDHGAVPIFVRL 165 (529)
Q Consensus 106 ~~~~~i~~g--~i~~Li~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~------~~~g~i~~L~~l 165 (529)
....+...+ ++..|++++..++ ...++..|+.+|..++.......+.+ +.+|+++.+++-
T Consensus 255 ~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR~ 324 (329)
T PF06012_consen 255 FSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLRK 324 (329)
T ss_pred HHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHHH
Confidence 344555555 9999999998754 35799999999999998555444433 235666666653
No 389
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.89 E-value=5.5e+02 Score=30.09 Aligned_cols=200 Identities=12% Similarity=0.177 Sum_probs=102.7
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh-cCChH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009679 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362 (529)
Q Consensus 285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~-~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 362 (529)
+..+++-|...++..+..|+..++.+....+... ... .+..+ .+.+++.+. +..||...-.++..+...-...+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~--~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEE--LKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchH--HhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666677788899999999999987544222 221 11122 334455666 899999999999998875333333
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc-------------------CCC
Q 009679 363 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------------------NCP 423 (529)
Q Consensus 363 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------------------~~~ 423 (529)
..++. ++|...-.-.+.+..|-..|-..+..........++-.+.+..+.....+.+ +..
T Consensus 120 p~LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k 198 (1312)
T KOG0803|consen 120 PFLKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK 198 (1312)
T ss_pred HHHHh-hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh
Confidence 33332 3333322222234455555555555554422112222222222222222221 111
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009679 424 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 494 (529)
Q Consensus 424 ~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 494 (529)
...+...++.++..++.......+. +.....+...-.-+.+..+..+..+.+......++-.+.+
T Consensus 199 ~~Rvi~ssLl~l~~l~~~~~~~~el------~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 199 YQRVISSSLLLLLKLFKITGDEEEL------HSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred hHHHHHHHHHHHHHHHHHhCchHhh------hhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 2346666666777666332211110 0001111111224677888888888887777666655543
No 390
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=43.07 E-value=96 Score=21.97 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=43.1
Q ss_pred HHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcH
Q 009679 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (529)
Q Consensus 220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 285 (529)
.+|+.+.|-.. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+...+
T Consensus 4 il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl 68 (71)
T PF06743_consen 4 ILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFL 68 (71)
T ss_pred HHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHH
Confidence 44555555432 333333445566666666666789999999999999988887777766654443
No 391
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.07 E-value=78 Score=30.78 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=58.7
Q ss_pred CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc-CCCHHHHHHHHHHH
Q 009679 411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKIL 489 (529)
Q Consensus 411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~-~~~~~v~~~a~~il 489 (529)
.+++.|..-|...|+.|+..++..+..+...+.+ .|+.-+....+...|..|.. +..+.|+++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~-----------~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGK-----------RFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch-----------HHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3577788888999999999999888888766543 25666777778888888877 78899999998888
Q ss_pred HhhCC
Q 009679 490 ETYWV 494 (529)
Q Consensus 490 ~~~~~ 494 (529)
.++-+
T Consensus 114 ~eWse 118 (462)
T KOG2199|consen 114 KEWSE 118 (462)
T ss_pred HHHHH
Confidence 88876
No 392
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.62 E-value=62 Score=26.86 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009679 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (529)
Q Consensus 343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (529)
+..|+..|+.+..|. -+..|+++|.+++..+...|+.+|.+....-
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 445666666555441 2788999999889999999999999887643
No 393
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.57 E-value=6.5e+02 Score=29.58 Aligned_cols=257 Identities=11% Similarity=0.093 Sum_probs=127.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHH-HHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009679 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (529)
Q Consensus 72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~L-i~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 150 (529)
.+..+++.|...|+..+..|+..+..+....+.+...-+ .+.++.+ .++..+++ .++|...-.++..+...-....
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~i--l~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGI--LPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhh--HHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999865422222111 1223333 34445666 8999999999998886322221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhc------------------c
Q 009679 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFN------------------E 210 (529)
Q Consensus 151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~l~~~l~------------------~ 210 (529)
....+ ..+|...-.-.+.+..+...|...+...... ...+......+ +...+.+.+. .
T Consensus 119 sp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E 196 (1312)
T KOG0803|consen 119 SPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELE 196 (1312)
T ss_pred hHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHH
Confidence 11111 2333333333334555555555555554331 12222222211 1111222210 0
Q ss_pred chhHHHHHHHHHHHhhhhcCC-CCCchh----hhhc--hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhC
Q 009679 211 HAKLSMLRNATWTLSNFCRGK-PQPLFE----QTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (529)
Q Consensus 211 ~~~~~~~~~a~~~L~~l~~~~-~~~~~~----~~~~--~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 283 (529)
.....+...++-++..+.... +..... .... .-..+.+++.+..+.+..+....+..+++.-... -.-.+..
T Consensus 197 ~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~-~~~~~~~ 275 (1312)
T KOG0803|consen 197 SKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR-VMESEKN 275 (1312)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh-cchhhhh
Confidence 011234444555554444221 111111 1111 1235667788888999999999999888764433 1111123
Q ss_pred cHHHHHH-hcCCCCcchHHHHHHHHHHhhc-CChhhHHH--HHhcCChHHHHHHhc
Q 009679 284 VCPRLVE-LLRHPSPSVLIPALRTVGNIVT-GDDMQTQC--IINHQALPCLLDLLT 335 (529)
Q Consensus 284 ~~~~L~~-lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~--~~~~~~l~~L~~lL~ 335 (529)
.+...+. ...+.+ .+.......+..... ..+..... ..+.++++.+..+++
T Consensus 276 ~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 276 YLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred HhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 3333333 333333 344344444442222 12222211 145578888888886
No 394
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.94 E-value=17 Score=20.05 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhc
Q 009679 342 IKKEACWTISNITA 355 (529)
Q Consensus 342 v~~~a~~~L~nl~~ 355 (529)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68889999998865
No 395
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.33 E-value=41 Score=32.18 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009679 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (529)
Q Consensus 135 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (529)
..+.+++++...++..+.+.+-|+++.++.-. ++.++-+++..+.++.++..++.+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56688999988899999999999998887743 4468999999999999999988877766544
No 396
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=40.31 E-value=1e+02 Score=27.31 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 009679 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419 (529)
Q Consensus 340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 419 (529)
.++-..++..|..++.+++++...+.+. ++.++..+.......-..+..++..+..+ +++.+..+.+. .+..++++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHH
Confidence 3566788899999999988887777663 44333433332211223566777777765 44555554443 48888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhh
Q 009679 420 LNCPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 420 L~~~~~~v~~~~l~aL~~l~~~~ 442 (529)
+.....+ ..-+..|..++..+
T Consensus 151 l~~~gr~--~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 151 LRKHGRQ--PRYLDFLSSLCVCN 171 (207)
T ss_dssp -----------------------
T ss_pred HHHcCCC--hHHHHHHhhhcccC
Confidence 8763322 23456666666544
No 397
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.66 E-value=1.5e+02 Score=32.67 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=69.4
Q ss_pred CChHHHHHHhccCCchhHHHHHHHHHHHH---hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCH
Q 009679 325 QALPCLLDLLTQNYKKSIKKEACWTISNI---TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (529)
Q Consensus 325 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl---~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (529)
.++.....+|.++ +..+|..|..+++.. .+..++..-.++. ...|.++..+..+++-+...|+.+|.++...++.
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4677777888888 889999999888743 3333444444443 4899999999999999999999999999988765
Q ss_pred HHHHHHHHcCChHHHHhccC
Q 009679 402 EQIKFLVSQGCIKPLCDLLN 421 (529)
Q Consensus 402 ~~~~~l~~~~~l~~L~~lL~ 421 (529)
-....+.+ .++|.+-.++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55555443 46666665543
No 398
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.16 E-value=1.4e+02 Score=28.91 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009679 130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLV 195 (529)
Q Consensus 130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (529)
.+|..|+.++..+.. .+.....++..+ ++..|+.+++. -...++..|+.+|..++.+...+.+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456666666666655 566666777666 88999999976 357899999999999998776554443
No 399
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.30 E-value=2.9e+02 Score=32.37 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=109.3
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchhHHHHHHHH--
Q 009679 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNAT-- 221 (529)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~-- 221 (529)
.+.+..+++.|.+..+...+++.++.++..+.|++.....+-....+...+.-.+..++.+.. .++++.+.....
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 444447788999999999999999999999988887765443321122222223334444432 222333322222
Q ss_pred HHH-hhhhcCCCCCchh-----------hhhchHHHHHHhhccCChH---HHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009679 222 WTL-SNFCRGKPQPLFE-----------QTRPALPALERLIHSNDDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (529)
Q Consensus 222 ~~L-~~l~~~~~~~~~~-----------~~~~~l~~L~~ll~~~d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 286 (529)
.+. +.++..+...... ..-..+|.+-.++.+...+ .+...+..+......+++ .+.....+.+.
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcce
Confidence 222 2233322111100 0123344455555544332 455555555555555443 35566667777
Q ss_pred HHHHhcCCC--CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC
Q 009679 287 RLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338 (529)
Q Consensus 287 ~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 338 (529)
.++....++ +...+.-.+.+|++-+.........+-..|++.++..++.++.
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 777777764 3344556788888877766666666668899999999998764
No 400
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=37.30 E-value=3.2e+02 Score=24.76 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 009679 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (529)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 337 (529)
...-...|+.++.... ..+.+-+.+++..+..+....+. ......++.++-.+.+...+ ..|.+.|..+
T Consensus 140 ~~~Yf~~IG~lS~~~~-Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~ 208 (226)
T PF14666_consen 140 SRGYFLFIGVLSSTPN-GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSG 208 (226)
T ss_pred HHHHHHHHHHHhCChh-HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcC
Confidence 3444556777776654 44667778999999999877532 22233356666444443333 2356677777
Q ss_pred CchhHHHHHHHHHHHHhc
Q 009679 338 YKKSIKKEACWTISNITA 355 (529)
Q Consensus 338 ~~~~v~~~a~~~L~nl~~ 355 (529)
+..+|..|...|..+..
T Consensus 209 -s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 209 -SESIRLYATKHLRVLLR 225 (226)
T ss_pred -CHHHHHHHHHHHHHHhc
Confidence 88999999988877653
No 401
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.45 E-value=1.4e+02 Score=25.56 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh
Q 009679 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (529)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 291 (529)
...+++..|..++..+........ ....++..+...|.+ +.+|+.-++..|..++...+.....-++ .+++.+-..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHH
Confidence 456899999999999877542221 245567788888877 8999999999999998776544332222 566666666
Q ss_pred cCCC------------CcchHHHHHHHHHHh
Q 009679 292 LRHP------------SPSVLIPALRTVGNI 310 (529)
Q Consensus 292 L~~~------------~~~v~~~al~~L~~l 310 (529)
|... ..+....+++++..+
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 6321 112455666666666
No 402
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.43 E-value=5.9e+02 Score=27.66 Aligned_cols=142 Identities=8% Similarity=0.097 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH-------HcCC
Q 009679 341 SIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-------SQGC 412 (529)
Q Consensus 341 ~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-------~~~~ 412 (529)
+...+++.||-.+.-.. -....++ ...-+-.+...++...+.+...++..++.++..+.......+. +..-
T Consensus 207 k~~~eiIrClka~mNn~-~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNK-FGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhccc-cceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 44566666666665431 1122222 2223555666676667788888888888887765433332222 1112
Q ss_pred ---hHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHH
Q 009679 413 ---IKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 488 (529)
Q Consensus 413 ---l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~i 488 (529)
...|++.|... +..+...|...|..+........ .--..+.-+.+.|.-+.|.+|....|.. ...+.++
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dld------fRlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlkv 358 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLD------FRLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLKV 358 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhh------HHHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHHH
Confidence 44566666655 44555555554444443332221 0111345566788888888887775443 3444444
Q ss_pred HH
Q 009679 489 LE 490 (529)
Q Consensus 489 l~ 490 (529)
++
T Consensus 359 fd 360 (1102)
T KOG1924|consen 359 FD 360 (1102)
T ss_pred Hh
Confidence 43
No 403
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=36.12 E-value=46 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=20.0
Q ss_pred hchHHHHHHHhcCCCHHHHHHHHHHH
Q 009679 464 AEGLEKIENLQSHDNTEIYEKAVKIL 489 (529)
Q Consensus 464 ~g~~~~l~~L~~~~~~~v~~~a~~il 489 (529)
....+.+..-..++++.|++.|..+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34566677778889999999998764
No 404
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=35.41 E-value=4.6e+02 Score=26.04 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=104.0
Q ss_pred chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC-hHHHHHHHHHHHH
Q 009679 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSY 267 (529)
Q Consensus 189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~L~~ 267 (529)
+...+..++..++-.|+.++ ++.|+.-+...-.+|.++.............++-..+...+.... -.-....+..|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLF-dSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLF-DSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 34455666777888888888 777777776666666555442211111111111122223333221 1224445555555
Q ss_pred hccCCchh--HHHHHHhCcHHHHHHhcCCCCc-chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh-ccCCchhHH
Q 009679 268 LSDGTNDK--IQAVIEAGVCPRLVELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIK 343 (529)
Q Consensus 268 l~~~~~~~--~~~~~~~~~~~~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~ 343 (529)
+..+-.-- .++.+ -.+..|+.+=..... -.......|+-+++..+...+..++. .+++.- ......+|
T Consensus 246 iIngfAlPlKEEhki--FL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIr-----glLK~WP~tnS~KEV- 317 (457)
T KOG2085|consen 246 IINGFALPLKEEHKL--FLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIR-----GLLKYWPKTNSSKEV- 317 (457)
T ss_pred hcCcccCcchhHHHH--HHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHH-----HHHHhcCCCCCccee-
Confidence 55432100 01000 112233333222111 11222334444555544443333221 111111 11101111
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC---Ch----HH
Q 009679 344 KEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG---CI----KP 415 (529)
Q Consensus 344 ~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~l----~~ 415 (529)
.-+.-|..+.. ..+...+.+.. .+...+-.++++++..|.+.|++...| +++.-|+..+ ++ +.
T Consensus 318 -mFL~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVAEraL~~wnN-------e~i~~Li~~n~~~ilPiiFpa 388 (457)
T KOG2085|consen 318 -MFLNELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVAERALYLWNN-------EYIRSLISQNAEVILPIVFPA 388 (457)
T ss_pred -eeHhhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHHHHHHHHHhh-------HHHHHHHHhccceeeehhhHH
Confidence 11112222222 13444444332 256666777788888888888876544 3444444332 23 33
Q ss_pred HHhccC-CCCHHHHHHHHHHHHHHHHhh
Q 009679 416 LCDLLN-CPDPRIVTVCLEGLENILKAG 442 (529)
Q Consensus 416 L~~lL~-~~~~~v~~~~l~aL~~l~~~~ 442 (529)
|.+.-+ +-+..+...++.++..++..+
T Consensus 389 Lyr~sk~hWN~~i~~l~~nvlk~f~emd 416 (457)
T KOG2085|consen 389 LYRNSKSHWNQAIHNLILNVLKTFMEMD 416 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333332 234456777778888777665
No 405
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.49 E-value=2.9e+02 Score=23.43 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-HhccCC-chhHHHHHHHHHHHHh
Q 009679 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNY-KKSIKKEACWTISNIT 354 (529)
Q Consensus 277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 354 (529)
..+++..+.+.+...+.++++.+...+++++..+..........-++ -.++.+.. ++.++. ...-|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 44666688888888888877889999999999998643322222222 23444444 565442 2356777889999998
Q ss_pred cC
Q 009679 355 AG 356 (529)
Q Consensus 355 ~~ 356 (529)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 76
No 406
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=6e+02 Score=27.11 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=49.3
Q ss_pred CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh-------HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009679 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN-------TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVA 185 (529)
Q Consensus 114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~ 185 (529)
+-+..+++-+++++ ++++..|+..+......+... -+.+. .-...|..+..+ .+.+.+..++.+|+-||
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr--phy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLR--PHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhc--cchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 45778899999999 999999999998887633221 11111 122334444444 56778889999999998
Q ss_pred CCCc
Q 009679 186 GDSP 189 (529)
Q Consensus 186 ~~~~ 189 (529)
-...
T Consensus 125 mt~s 128 (878)
T KOG2005|consen 125 MTMS 128 (878)
T ss_pred eeec
Confidence 5443
No 407
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=33.88 E-value=3.1e+02 Score=23.56 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh-cCCHHHHHH
Q 009679 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT-AGNVNQIQA 363 (529)
Q Consensus 285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~-~~~~~~~~~ 363 (529)
=|.|+.+|...+. .......|+.++..-.... ...+.+..+-|...+.+. ...--..|..+...+. ....+.+..
T Consensus 5 kplLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQET--KESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHH
Confidence 3667777766542 3445555665554222111 123556677777766553 3333467777877777 334555666
Q ss_pred HHHcCCHHHHHHHHhcC-ChhHHHH--HH-HHHH---HHhcCCC-HHHHHHHHHcCChHHHHhccCCCCH-HHHHHHHHH
Q 009679 364 IIEAGIIGPLVNLLLNA-EFEIKKE--AA-WAIS---NATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEG 434 (529)
Q Consensus 364 l~~~~~l~~L~~~l~~~-~~~v~~~--a~-~aL~---nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~~-~v~~~~l~a 434 (529)
+++. +++.+...|.++ +.++... |. .+++ .+..... .+..+.++.. .++.+-+++..+.. .....++.-
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHH
Confidence 6665 888888888776 2333211 11 1111 1111111 1222332222 44555555555444 555666666
Q ss_pred HHHHHHh
Q 009679 435 LENILKA 441 (529)
Q Consensus 435 L~~l~~~ 441 (529)
+..++..
T Consensus 159 ~e~~v~~ 165 (174)
T PF04510_consen 159 FESFVSR 165 (174)
T ss_pred HHHHHHH
Confidence 6655543
No 408
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=33.49 E-value=5.5e+02 Score=26.44 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHH
Q 009679 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 432 (529)
Q Consensus 369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l 432 (529)
++-.+..-....|......+..+|+++... ..+..++ +++.|.-||..+..+-+..+.
T Consensus 239 Lilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI 296 (739)
T KOG2140|consen 239 LILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAI 296 (739)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHH
Confidence 444455556666777777888888888753 3444433 466666677764433333333
No 409
>PRK09169 hypothetical protein; Validated
Probab=32.89 E-value=1.1e+03 Score=29.60 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHHHH
Q 009679 254 DDEVLTDACWALSY 267 (529)
Q Consensus 254 d~~v~~~a~~~L~~ 267 (529)
++.-..+++++|+.
T Consensus 329 ~aQ~vAN~LNALSK 342 (2316)
T PRK09169 329 NAQAVANALNALSK 342 (2316)
T ss_pred CHHHHHHHHHHHhc
Confidence 34444555555554
No 410
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.07 E-value=2.6e+02 Score=22.15 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=46.0
Q ss_pred hhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009679 239 TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (529)
Q Consensus 239 ~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 314 (529)
+..++|.+...+. +..++.+..+...++.|+...+=. ..+++ .++..++........ ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3567889999998 778999999999999998654311 21222 222333333322222 478888888888543
No 411
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=31.86 E-value=1.8e+02 Score=22.73 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=43.8
Q ss_pred CChHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009679 114 GVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG 186 (529)
Q Consensus 114 g~i~~Li~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 186 (529)
|++..+.+.+.+.+ ...-+..++.++..+..-.... + ..+.|.+..+|++ ..++++..|+.++..+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~---i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKH---I--SSALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55666666665443 2455888888888877622221 1 1345677777766 677899999988887763
No 412
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=31.76 E-value=2.3e+02 Score=24.32 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh
Q 009679 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (529)
Q Consensus 255 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 334 (529)
-++|..|..++..+.+....... +. .++..+..-|.+ +.+++..+..+|.+++...+.....-++ .+++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 57899999999888665443333 21 346777777877 8899999999999999887765544444 6777777777
Q ss_pred c
Q 009679 335 T 335 (529)
Q Consensus 335 ~ 335 (529)
.
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 413
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=31.38 E-value=3.4e+02 Score=23.30 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=84.8
Q ss_pred ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH--HHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009679 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI--IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403 (529)
Q Consensus 326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l--~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 403 (529)
+=|.|+.+|... .++......|+.+... ....+ .+.|..+.|.+++.+....-...|......+...-..+.
T Consensus 4 ikplLIsCL~~q---~~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 4 IKPLLISCLTMQ---ETKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEF 77 (174)
T ss_pred hHHHHHHHHHhh---cccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhH
Confidence 346677777654 2233334444444331 11122 256677778887766433333667887777773324466
Q ss_pred HHHHHHcCChHHHHhccCCCC-HHHHH--HH-HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCH
Q 009679 404 IKFLVSQGCIKPLCDLLNCPD-PRIVT--VC-LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479 (529)
Q Consensus 404 ~~~l~~~~~l~~L~~lL~~~~-~~v~~--~~-l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~ 479 (529)
+..+++. +++.+.+.|..+. .++.. .| ..++...+..-+... ....+..++.. .++.+.++.+...+
T Consensus 78 l~~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~------~~~~vk~L~~~--mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 78 LIPFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM------RVDLVKELLPK--MVKSVKELVERGME 148 (174)
T ss_pred HHHHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHH--HHHHHHHHHHcccH
Confidence 6665554 6666666665542 33332 22 234444443333221 01123333332 57888888888888
Q ss_pred -HHHHHHHHHHHhhCCC
Q 009679 480 -EIYEKAVKILETYWVE 495 (529)
Q Consensus 480 -~v~~~a~~il~~~~~~ 495 (529)
..-.+|..=+++++..
T Consensus 149 ~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 149 VGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7778888888877654
No 414
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.36 E-value=3e+02 Score=31.04 Aligned_cols=101 Identities=10% Similarity=0.108 Sum_probs=69.7
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCcc
Q 009679 375 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 454 (529)
Q Consensus 375 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~ 454 (529)
+-..+-++++|..++..|+-.+.. .-.++.+...++++-=.|++.+..|+..++.+|..|+...+...
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~----yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~-------- 361 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKS----YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKD-------- 361 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHh----ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccch--------
Confidence 334556889999999999998863 33556777788888888999999999999999999987743221
Q ss_pred chHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 009679 455 NLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 490 (529)
Q Consensus 455 ~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~ 490 (529)
..+.|. .-.-+++..+. .+.+..|+..+..++.
T Consensus 362 --~L~lFt-sRFK~RIVeMadrd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 362 --KLELFT-SRFKDRIVEMADRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred --HHHHHH-HHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 233332 22345666665 5555666655544443
No 415
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.24 E-value=7.2e+02 Score=27.05 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009679 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (529)
Q Consensus 82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (529)
..-+.++.+++..+..++... + -+ +..++..|+.-|.+++ ..+...|.+.|.+|....|..+..++ ..
T Consensus 315 D~L~~vk~raL~ti~~lL~~k-P--Eq---E~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vvi-----~E 382 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNK-P--EQ---ENNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVVI-----DE 382 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-c--HH---HHHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeehH-----HH
Confidence 444678899999999999753 2 21 2345677888898888 68888999999999987776654443 44
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHhh
Q 009679 162 FVRLLSSPT--DDVREQAVWALGNVA 185 (529)
Q Consensus 162 L~~lL~~~~--~~v~~~a~~~L~nl~ 185 (529)
+.+++-.++ ....-.|+.+|..+.
T Consensus 383 Ier~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 383 IERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHHcccCccccceeehhhhhhhhH
Confidence 555554433 444556666776665
No 416
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.36 E-value=65 Score=30.53 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC------C-------HHHHHHHHHcCChHHHHhccCC--------C--
Q 009679 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG------S-------NEQIKFLVSQGCIKPLCDLLNC--------P-- 423 (529)
Q Consensus 367 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~------~-------~~~~~~l~~~~~l~~L~~lL~~--------~-- 423 (529)
...+..+++-|...+...|..|+.+|..++.+. . ..+...|.+.|+++.|..+|.. .
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 346677888888888899999999999998765 1 2334566788999999998741 0
Q ss_pred ----------CHHHHHHHHHHHHHHHHhhhh
Q 009679 424 ----------DPRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 424 ----------~~~v~~~~l~aL~~l~~~~~~ 444 (529)
+..-...++.+++-++.....
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~ 169 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARR 169 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHh
Confidence 113445677777777765543
No 417
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=30.12 E-value=2e+02 Score=22.41 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=44.2
Q ss_pred CChHHHHHhhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009679 114 GVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG 186 (529)
Q Consensus 114 g~i~~Li~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~ 186 (529)
|++..+-..+.+ ......+..++..+..+..-...... .+.|.+..+|++ ..++++..|+.++..+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 455556666655 22256788888888888763333322 234667777765 556888888888887763
No 418
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.07 E-value=1.1e+02 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=31.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009679 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (529)
Q Consensus 158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (529)
+++.|+.-|.+++.+|...|+.+|...|.+. .+-+.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999776 3434443
No 419
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.28 E-value=3.8e+02 Score=23.22 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009679 371 GPLVNLLLNAEFEIKKEAAWAISNATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 443 (529)
Q Consensus 371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~ 443 (529)
+.+...+.+++.-+++.+..++...... ...+ .+++.+..++++++.-|+..+.++|..+.....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFD--------LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 6778888888999999998888877664 2211 135556666677888899999999998887643
No 420
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=28.99 E-value=6.5e+02 Score=25.88 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=116.5
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhC---CC-------chhHHHHHhcCChHHHHHHhccc----h---hHHHHH
Q 009679 157 GAVPIFVRLLSS-PTDDVREQAVWALGNVAG---DS-------PKCRDLVLSNGALMPLLAQFNEH----A---KLSMLR 218 (529)
Q Consensus 157 g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~---~~-------~~~~~~~~~~~~i~~l~~~l~~~----~---~~~~~~ 218 (529)
.+|..+.+.++. +...++.+++|.||.+-- ++ |.....+-+..++...+.++... + .+...+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 356677777765 667889999999998831 11 11123444555666777666321 1 244555
Q ss_pred HHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009679 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298 (529)
Q Consensus 219 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 298 (529)
.++..+.........+... -..++..|.++ +-.++++..|+..-..=+..+. ....++..=+.|.++.-|....
T Consensus 177 vvl~~ia~vgeS~qyPPVN-WaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~~t-- 250 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVN-WAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSVNT-- 250 (589)
T ss_pred HHHHHhhhcCCCCCCCCcc-HHHHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhHHH--
Confidence 5555554443333222211 12333444443 3367788777765554444332 3355666556666666665443
Q ss_pred hHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH-HHHHHHcCCHHHHHH
Q 009679 299 VLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQ-IQAIIEAGIIGPLVN 375 (529)
Q Consensus 299 v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~-~~~l~~~~~l~~L~~ 375 (529)
+..-+..+.-.... .++..+.+++.-++..+-.. ....++++...+..-|+.-.. .+|.+ .-.++ +.....+.+
T Consensus 251 -k~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~-~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~L-c~ttekIF~ 327 (589)
T PF11229_consen 251 -KKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAA-SRPSNPELCQSALQGLSQAMKLPSPAQHCWSLL-CETTEKIFD 327 (589)
T ss_pred -HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhc-CCCCChHHHHHHHHHHHHHhcCCChhhHHHHHH-HHHHHHHHH
Confidence 33333333333332 23444545442222222211 112256777777777776544 23332 22211 235566666
Q ss_pred HHhcC----ChhHHHHHHHHHHHHhc
Q 009679 376 LLLNA----EFEIKKEAAWAISNATS 397 (529)
Q Consensus 376 ~l~~~----~~~v~~~a~~aL~nl~~ 397 (529)
++-++ +.+.-...+.+|..+..
T Consensus 328 lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 328 LLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred hCcccccHHHHHHHHHHHHHHhhcCH
Confidence 66332 34444556666666654
No 421
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=27.89 E-value=5.5e+02 Score=24.66 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhhhcCCCCCchhhhhchHHHHHH-hhc--------cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009679 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIH--------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (529)
Q Consensus 216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~--------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 286 (529)
+++..+..+.......+... ......+|.|+. .|. ..+++|..-....+..+...-.+....+.+ .++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 34444455554444433222 234556665554 332 135777776666666666544455565665 5667
Q ss_pred HHHHhcCC---CCcchHHHHHHHHHHhhcCChhhHHHHH---hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc----C
Q 009679 287 RLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCII---NHQALPCLLDLLTQNYKKSIKKEACWTISNITA----G 356 (529)
Q Consensus 287 ~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~ 356 (529)
..+.++.. .-|+.+..-...|..+...+....-.+- -..++..+.-.++|+ ..++...++.++..+.. .
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHhc
Confidence 77777755 3467788777777777764322111100 013456677778888 89999999988887775 2
Q ss_pred CHHHHHHHHHcCC---HHHHHHHHhcC-ChhHHHHHHHHHHHHh
Q 009679 357 NVNQIQAIIEAGI---IGPLVNLLLNA-EFEIKKEAAWAISNAT 396 (529)
Q Consensus 357 ~~~~~~~l~~~~~---l~~L~~~l~~~-~~~v~~~a~~aL~nl~ 396 (529)
+++....+.+.-. +..++..+.+. +...-+.-+..|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 4555555555433 44444445444 2223333445555554
No 422
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=26.89 E-value=3.7e+02 Score=22.84 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=49.4
Q ss_pred cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009679 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (529)
Q Consensus 198 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~ 271 (529)
.+-+...+..+..-.|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 344455555554556777776666666644333 2344455678899999999999998888888888877654
No 423
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.64 E-value=2e+02 Score=25.08 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=52.2
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009679 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (529)
Q Consensus 286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 365 (529)
+.+.....+++.-++..++.++...... ..... ..++.+-.++.++ +..|++...|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677778888888888887777666553 11111 2345555666666 889999999999999998777665555
Q ss_pred H
Q 009679 366 E 366 (529)
Q Consensus 366 ~ 366 (529)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 424
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.56 E-value=3.2e+02 Score=21.55 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=42.6
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-CCCCHHH-HHHHHHHHHHhhCC
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDV-REQAVWALGNVAGD 187 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v-~~~a~~~L~nl~~~ 187 (529)
++|.+.+.|.....++.+..+.-+++.++...+=.. . ++..++..+ ......- ...++.++..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-E-----VLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-H-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 578888888844338999999999999998433222 2 233333322 2222222 47788889888843
No 425
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.33 E-value=1.3e+02 Score=23.75 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.3
Q ss_pred ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009679 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (529)
Q Consensus 115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 155 (529)
+++.|+.-|.+++ +++...|..+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5678899999988 899999999999999844 55555553
No 426
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=25.96 E-value=6.3e+02 Score=24.69 Aligned_cols=139 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH-hccCCchh----HHHHHHHH
Q 009679 276 IQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKS----IKKEACWT 349 (529)
Q Consensus 276 ~~~~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~----v~~~a~~~ 349 (529)
.+.+.+..++..|+.+ ..+..+.++..+++.+.++....... .+....+...+.++ +.....+. +.++-+..
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~l 79 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVEL 79 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHH
Q ss_pred HHHHhc---CCHHHHHHHHHcC--------------------------CHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-
Q 009679 350 ISNITA---GNVNQIQAIIEAG--------------------------IIGPLVNLLLNAEFEIKKEAAWAISNATSGG- 399 (529)
Q Consensus 350 L~nl~~---~~~~~~~~l~~~~--------------------------~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~- 399 (529)
+..+|. .+|.....+...+ ++..|+..+... -.+-..|..+|.-++.-.
T Consensus 80 L~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~ 158 (353)
T PF10257_consen 80 LNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLAS 158 (353)
T ss_pred HHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCC
Q ss_pred -CHHHHHHHHHcCChHHHH
Q 009679 400 -SNEQIKFLVSQGCIKPLC 417 (529)
Q Consensus 400 -~~~~~~~l~~~~~l~~L~ 417 (529)
++....++++..-+..++
T Consensus 159 ~~~~~~~~i~~~S~fc~~l 177 (353)
T PF10257_consen 159 EDPALAQYIVEHSDFCPVL 177 (353)
T ss_pred CCcHHHHHHHHcchhHHHH
No 427
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.64 E-value=3.2e+02 Score=21.24 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh
Q 009679 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (529)
Q Consensus 212 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 291 (529)
+.+.+.....|++.+.... ..++..+.+.+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4556666667777765222 4556666666666666666777777777776544443434443444555555
Q ss_pred cCCCCcchHHHHHHHH
Q 009679 292 LRHPSPSVLIPALRTV 307 (529)
Q Consensus 292 L~~~~~~v~~~al~~L 307 (529)
....++.++....+++
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5545555555444444
No 428
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.61 E-value=1.1e+02 Score=28.89 Aligned_cols=56 Identities=27% Similarity=0.402 Sum_probs=42.0
Q ss_pred hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--------------hhHHHHHhCCChHHHHHhhC
Q 009679 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--------------ENTRVVIDHGAVPIFVRLLS 167 (529)
Q Consensus 111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~L~~lL~ 167 (529)
.+...+..+++-|...+ ...+..|+.+|..++.|.- .+...+.+.|+++.|..+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567778899998887 8899999999999998652 12234456778888877774
No 429
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=25.32 E-value=6.3e+02 Score=24.50 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhC
Q 009679 137 WALTNIASGTSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAG 186 (529)
Q Consensus 137 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~ 186 (529)
..+.+++.-.+.....+++.|.+..++.++.- .+..++.+....+..+..
T Consensus 4 ~~ll~~a~LG~~E~a~lL~~gfL~k~L~II~aD~~~s~~l~~~y~~~~r~~~k 56 (337)
T PF12030_consen 4 GLLLSFAELGPHETAVLLEHGFLLKCLEIIWADTNDSKRLKRMYQNYIRLIEK 56 (337)
T ss_pred HHHHHHHHcCHHHHHHHhcCcHHHHHHHHHhcccccchhHHHHHHHHHHHHhc
Confidence 34566666566777788899988888887753 246677777766666654
No 430
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=25.30 E-value=98 Score=19.64 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=12.5
Q ss_pred CCCCchHHHh-hhHHHHHHHH
Q 009679 18 VAVDAEEGRR-RREDNMVEIR 37 (529)
Q Consensus 18 ~~~~~~e~r~-~r~~~~~~lR 37 (529)
...|++|+|+ .|++.-..+|
T Consensus 9 pk~DPeE~k~kmR~dvissvr 29 (51)
T PF15178_consen 9 PKMDPEEMKRKMREDVISSVR 29 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 4689999975 3444444444
No 431
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.75 E-value=1.3e+03 Score=27.80 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=60.4
Q ss_pred CcHHHHHHh----cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 009679 283 GVCPRLVEL----LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (529)
Q Consensus 283 ~~~~~L~~l----L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 358 (529)
..++.++.+ +.+.++.++..+......+....+... ...++..|+..+.++ ...-...|..+|..++..++
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC----QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccH
Confidence 445555544 567788888887777777766554322 224666777777666 44344688888888887555
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009679 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (529)
Q Consensus 359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (529)
+...... .++..+++.+..=+..-.+.....|+.++.
T Consensus 506 ~~l~~fa--~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 506 SELQPFA--TFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHHHTH--HHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 5443322 244455555554333333345666666654
No 432
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.30 E-value=2e+02 Score=25.49 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009679 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (529)
Q Consensus 298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 377 (529)
.+...+.+.|..++.++......+.+. ++.+...+... ....-..+..++..+..++++....+.+. .+..++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 456789999999999887776655542 33333333222 11222356777888888877777666554 377778777
Q ss_pred hc
Q 009679 378 LN 379 (529)
Q Consensus 378 ~~ 379 (529)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 66
No 433
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=22.44 E-value=6.9e+02 Score=23.89 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=58.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009679 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (529)
Q Consensus 243 l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 322 (529)
.+.|..++......|+...+..+-..--.-........ .|++..++.-|.+++.++...+...+-.+...-...
T Consensus 99 ~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l-~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~----- 172 (307)
T PF04118_consen 99 SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL-KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK----- 172 (307)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH-HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-----
Confidence 34555566666667777777666544322222223233 377777888888888888888888888887532211
Q ss_pred hcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009679 323 NHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (529)
Q Consensus 323 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 351 (529)
-+...+...+-. ++.+|..|...+.
T Consensus 173 --~F~~~lwl~ii~--sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 173 --YFWQCLWLCIIT--SPSRRLGALNYLL 197 (307)
T ss_pred --HHHHHHHHHHhc--CcchhHHHHHHHH
Confidence 233444444433 4567776664444
No 434
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.80 E-value=1e+03 Score=28.52 Aligned_cols=135 Identities=14% Similarity=0.111 Sum_probs=70.9
Q ss_pred HhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCCh
Q 009679 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (529)
Q Consensus 248 ~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 327 (529)
.++.+.++.++.-+......+-...+. ..+..++..|+..+.+++..-...|+.+|..++..+....... +..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 445677888888777777766655432 2334677888888866666667789999999997554433221 1122
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009679 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (529)
Q Consensus 328 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 390 (529)
..++..+..=....+| ....+++.++........ -+...+.-.+-..|.+.++..++..+-
T Consensus 516 ~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~~~~~K~~GII 576 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSSNPKYKRIGII 576 (1426)
T ss_dssp HGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCCcHHHHHHhHH
Confidence 2233333322123344 346666666642111111 122223344455677777777765433
No 435
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=21.73 E-value=2.7e+02 Score=18.93 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHHhhCCCCCC
Q 009679 457 FAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDE 498 (529)
Q Consensus 457 ~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~~~~ 498 (529)
..+.+.+.|+-..|..+. ...+++|.+.+.++++-+...|.+
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e 53 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPE 53 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 478888899999999884 456799999999999988776554
No 436
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.52 E-value=4e+02 Score=20.84 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=27.8
Q ss_pred CcchHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHHhc
Q 009679 296 SPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLT 335 (529)
Q Consensus 296 ~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~ 335 (529)
+..+...++.+|.-++.| +.+....+.+..+++.+..+|.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 344566677777777777 5666666777777777777764
No 437
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.35 E-value=3.6e+02 Score=24.19 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCC-hhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009679 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSP-PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (529)
Q Consensus 75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~-~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~ 144 (529)
.+.+.|.++++.+|..|+..++..++..... +-..+. .+...|.-.+=..+-|.+|.+.+.-|+.+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5778899999999999999999999865322 122222 2444444444333337788887777777665
No 438
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=1.5e+03 Score=27.20 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=105.9
Q ss_pred hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC----CCcchHHHHHHH---HHHhhc
Q 009679 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRT---VGNIVT 312 (529)
Q Consensus 240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~v~~~al~~---L~~l~~ 312 (529)
.+++-.+...+.+.|+.++..++|++...-++.....+.....-.+-.+..+.++ +++.+.....-. ..+++.
T Consensus 1438 ~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~ill 1517 (1758)
T KOG1791|consen 1438 RGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFSDILL 1517 (1758)
T ss_pred cccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHHc
Confidence 5666677777888999999999999887766544321222222223333344333 233332221111 223332
Q ss_pred CChhh----------HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcC
Q 009679 313 GDDMQ----------TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNA 380 (529)
Q Consensus 313 ~~~~~----------~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~ 380 (529)
...+. ....++...+|.+..++.+. .++-+.+--|.+.-+..+ ++...+.+...+.+..++..+.++
T Consensus 1518 ~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~ 1596 (1758)
T KOG1791|consen 1518 VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSP 1596 (1758)
T ss_pred CCccccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcch
Confidence 22111 11234667778888888665 444444555655544432 344466677788888888888775
Q ss_pred --ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009679 381 --EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 424 (529)
Q Consensus 381 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 424 (529)
+...+.-...+|++.+... ......+-..|+...+..++.+.-
T Consensus 1597 l~~~~S~~LIL~~L~~~Vk~p-~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1597 LASEESKRLILATLQKGVKFP-FYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred hHHHHHHHHHHHHHHhcCCCc-HHHHHHHhcccHHHHHHHhccccc
Confidence 5566667777777776642 233344555688899999998654
No 439
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.83 E-value=1e+03 Score=25.19 Aligned_cols=184 Identities=14% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCc--hh
Q 009679 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FE 237 (529)
Q Consensus 160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~ 237 (529)
..++.-..+-++.+|..|+..|+--+..-|. .+....++.+.-..| .+.+..++.....++..|+...|... ..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHH
Q ss_pred hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009679 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (529)
Q Consensus 238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 317 (529)
.....-..++.++..+..-|+..++..+.++.... +++...+..+..++-+..+.-+......+.++|....+.
T Consensus 354 f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aev 427 (740)
T COG5537 354 FVERFKDRILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEV 427 (740)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Q ss_pred HH-HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009679 318 TQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (529)
Q Consensus 318 ~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 354 (529)
.. .+-..+-...++..+..+ ...-....-...+.++
T Consensus 428 ikEKipl~~k~n~lL~a~~qg-se~~f~v~~~iFsr~~ 464 (740)
T COG5537 428 IKEKIPLATKTNRLLEAMKQG-SERYFVVCEEIFSRFV 464 (740)
T ss_pred HHhhcchhhhhhhHHHHHHhh-hhccchhHHHHHHHHH
No 440
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=20.25 E-value=36 Score=30.75 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhhHHHHHhhhh
Q 009679 28 RREDNMVEIRKNKREESLLKKRR 50 (529)
Q Consensus 28 ~r~~~~~~lRk~~r~~~l~~~r~ 50 (529)
-|+.++.++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 46678899999999999999997
No 441
>PF15573 Imm27: Immunity protein 27
Probab=20.19 E-value=5.1e+02 Score=23.22 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=55.4
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHH
Q 009679 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIK 405 (529)
Q Consensus 327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~ 405 (529)
=+.|++++.+..+..|..-+...++.+|.+ .+ +.+.+=+. .|.+. +..+-.-|..|+..++.
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~TH-dD----L~~~nNl~----FLs~asE~~v~TF~s~A~~tlSy-------- 110 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATH-DD----LRDSNNLR----FLSSASEFGVFTFASGAITTLSY-------- 110 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcch-Hh----hhccccee----hHhhhhHHHHHHHHHHhhccchh--------
Confidence 356888888876777777777888888876 22 22222222 22222 33344445555555443
Q ss_pred HHHHcCChHHHHhccCC-CC-HHHHHHHHHHHHHHHHhhhh
Q 009679 406 FLVSQGCIKPLCDLLNC-PD-PRIVTVCLEGLENILKAGEA 444 (529)
Q Consensus 406 ~l~~~~~l~~L~~lL~~-~~-~~v~~~~l~aL~~l~~~~~~ 444 (529)
.++|.|+.+++. ++ +++-..+-++|..++...+.
T Consensus 111 -----eVIPYLLaLleeWed~td~~~~Irdsld~fln~~~~ 146 (259)
T PF15573_consen 111 -----EVIPYLLALLEEWEDITDTEIAIRDSLDSFLNYRDI 146 (259)
T ss_pred -----hHHHHHHHHHHHHhccchHHHHHHHHHHHHhhHHHH
Confidence 367778888763 33 55555666677766655443
Done!