BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009680
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/456 (60%), Positives = 344/456 (75%), Gaps = 12/456 (2%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL ++DPE+ E++ +EK+RQ + LELIASENF SRA +EA+GSCL NKYSEG PGKRYYG
Sbjct: 34 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 93
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E +DE+E LCQ+RAL AF+LD +WGVNVQP SGSPAN VYTA+L+PHDRIMGLDLP
Sbjct: 94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLP 153
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG+M+ +R+S TSI+FESMPY+L+ TGL+DY+ L TA LFRP+LIIAG SA
Sbjct: 154 DGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA 213
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R DY RMR++ D V A L+ DMAHISGLVAA V+ PFK+ D+VTTTTHK+LRG R
Sbjct: 214 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS 273
Query: 322 GMIFFKK-----DPVLGVEL----ESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEF 372
G+IF++K DP G E+ E IN AVFP LQGGPHNH I +AV LK A +P F
Sbjct: 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF 333
Query: 373 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITL 432
+ Y +V+ N RA+A L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT
Sbjct: 334 REYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 393
Query: 433 NKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKL 492
NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F + DFI EGV I LE K + +KL
Sbjct: 394 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKL 451
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 528
QDF +F+ + +A+LR RVE FP+PG
Sbjct: 452 QDFKSFLLK-DSETSQRLANLRQRVEQFARAFPMPG 486
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/457 (61%), Positives = 343/457 (75%), Gaps = 12/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 16 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 75
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 76 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 135
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESMPY+++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 136 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 195
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ +Y R+R+IAD GA LM DMAHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 196 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 255
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 256 MIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 315
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
VYQ++VV+NCRAL+ L ELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 316 VYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 375
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQ-GSKL 492
KN+ PGD+SAL P G+R+G+PA+T+RG EK+F +A FIH G+E+TL+ + + L
Sbjct: 376 KNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATL 435
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + V LR VE+ + FP+PG+
Sbjct: 436 KEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 470
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/457 (61%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 72 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 311
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 371
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 492
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 372 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 431
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + V LR VE+ FP+PG+
Sbjct: 432 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 467
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 549 bits (1415), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/457 (61%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYSEG PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 492
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/457 (60%), Positives = 342/457 (74%), Gaps = 11/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS+G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 492
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/457 (60%), Positives = 341/457 (74%), Gaps = 11/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV +II KE RQ LELIASENF SRAV+EA+GSCL NKYS G PG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELETLCQKRAL A+ LD WGVNVQP SGSPANF VYTA+++PH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGFMT K+++S TSI+FESM Y+++ TG +DYD LE+ A LF PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA LM DMAHISGLV A VV PF++C VVTTTTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 323 MIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
MIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ SI N
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKL 492
KN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L
Sbjct: 385 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATL 444
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + V LR VE+ FP+PG+
Sbjct: 445 KEFKEKLAG-DEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/457 (58%), Positives = 333/457 (72%), Gaps = 11/457 (2%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L ++D EV II KE RQ LELIASENF SRAV+EA+GS L NKYSEG PG+RYYGG
Sbjct: 20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E+IDELE LCQKRAL A++LD WGVNVQP SGSPANF VYTA+++PH RI GLDLP
Sbjct: 80 TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HGF T K+++S TSI+FES PY++ TG ++YD LE+ A LF PKLIIAG S Y
Sbjct: 140 GGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCY 199
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
R+ DY R+R+IAD GA L D AHISGLVAA VV PF++C VVTTTTHK+LRG R G
Sbjct: 200 SRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 259
Query: 323 MIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
IF++K DP G ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK
Sbjct: 260 XIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFK 319
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
+YQ +V++NCRAL+ L ELGYK+V+GGSDNHL+L DLR G DG R EK+L+ SI N
Sbjct: 320 IYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACN 379
Query: 434 KNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKL 492
KN+ PGDKSAL P G+R+G+PA+T+RG E++F +A FIH G+E+TL+ + + L
Sbjct: 380 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHXATKATL 439
Query: 493 QDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 529
++F + + + VA LR VE + F +PG+
Sbjct: 440 KEFKEKLAGDE-KIQSAVATLREEVENFASNFSLPGL 475
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH++LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY++G PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A A+AY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNK++EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 259/392 (66%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPGVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTH +LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NK ++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+RY GG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 258/392 (65%), Gaps = 16/392 (4%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L + DP+V I +E++RQ +ELIASENF SRAVMEA GS LTNKY+EG PG+R YGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
EY+D +E L ++RA F + NVQP SG+ AN VY +L+ D ++G++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG +P V+ + + + + Y +D T ++DYD + + A L RPKLI+A ASAY
Sbjct: 120 GGHLTHG--SP---VNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ + R+IAD VGA LM+DMAHI+GLVAA + +P Y VTTTTHK+LRGPRGG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
MI ++ + I+ A+FPG+QGGP H I AV A +FK Y +VV N
Sbjct: 235 MILCQE------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN 288
Query: 383 CRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-K 441
+ LAS L G+ LVSGG+DNHL+LVDLRP + G EK+LD IT+NKN++P D +
Sbjct: 289 AKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348
Query: 442 SALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
S V GIRIG+ A+TTRGF +E IA I
Sbjct: 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/388 (50%), Positives = 256/388 (65%), Gaps = 15/388 (3%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
D + E+I E++RQ + LELIASENF S+ V EAVGS LTNKY+EG PG RYYGG E I
Sbjct: 8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D +E+L +RA A F W NVQP SGS AN VY A+++P D +MG+DL GGHL
Sbjct: 68 DRVESLAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
+HG RV+ + ++ + Y + T L+D + + + A+ RPK+I+AGASAYPR +
Sbjct: 124 THG-----SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFW 178
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
D+ R+IAD VGA L++DMAH +GLVAA + +P Y VVT+TTHK+LRGPRGG+I
Sbjct: 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI-L 237
Query: 327 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 386
DP LG I+ +FPG+QGGP H I G AV A PEFK Y VV N + L
Sbjct: 238 SNDPELG----KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRL 293
Query: 387 ASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD-KSALV 445
A L GY++V+GG+DNHL LVDLRP G+ G E+ LD IT+NKN++P D K V
Sbjct: 294 AEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRV 353
Query: 446 PGGIRIGSPAMTTRGFSEKEFVAIADFI 473
GIRIG+PA+TTRGF+ +E +A+ I
Sbjct: 354 TSGIRIGTPAITTRGFTPEEMPLVAELI 381
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 258/406 (63%), Gaps = 15/406 (3%)
Query: 74 DGSSFVDYSLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEG 133
+ + F SL E D V I KE ERQ +ELIASEN SRAV++A GS LTNKY+EG
Sbjct: 4 NANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEG 63
Query: 134 LPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHD 193
PGKRYYGG E+ DE+E L +R FN NVQP SG+ AN V A+ KP D
Sbjct: 64 YPGKRYYGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGD 119
Query: 194 RIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPK 253
++G+ L GGHL+HG K +SG +F ++ Y + T L+DYD +E A +P
Sbjct: 120 TVLGMSLDAGGHLTHG---AKPALSGK--WFNALQYGVSRDTMLIDYDQVEALAQQHKPS 174
Query: 254 LIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTH 313
LIIAG SAYPR D+ R R IAD+VGA LM+DMAHI+G++AA A+P ++ VVT+TTH
Sbjct: 175 LIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTH 234
Query: 314 KSLRGPRGGMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFK 373
K+LRGPRGG + + E+ IN+AVFPGLQGGP H I G AV A + +FK
Sbjct: 235 KTLRGPRGGFVLTNDE-----EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFK 289
Query: 374 VYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLN 433
Y ++V++N +AL L G LV+GG+DNHL+LVDLRP G+ GA+VE+ L+ A IT N
Sbjct: 290 TYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCN 349
Query: 434 KNSVPGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVE 478
KN +P D + + GIR+G+PA TTRGF EF + I E E
Sbjct: 350 KNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE 395
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/407 (46%), Positives = 261/407 (64%), Gaps = 17/407 (4%)
Query: 87 DPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYI 146
D + E I +E +RQ ++ELIASENF S AVMEA GS LTNKY+EG PG+RYYGG E++
Sbjct: 11 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 147 DELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPHGGHL 206
D E++ RA A F + VNVQP SG AN VY L+ D ++G++L HGGHL
Sbjct: 71 DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 207 SHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAYPRDF 266
+HG P V+ + ++ + Y +D+ T ++YD + K A+ +PKLI+AGASAY R
Sbjct: 127 THG--AP---VNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTI 181
Query: 267 DYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGGMIFF 326
D+ + ++IAD V A LM+DMAHI+GLVAA + +P +Y D VTTTTHK+LRGPRGGMI
Sbjct: 182 DFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILC 241
Query: 327 KKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRAL 386
K+ E + I+ +FPG+QGGP H I AV A FK YQ +VV N + L
Sbjct: 242 KE------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVL 295
Query: 387 ASRLVELGYKLVSGGSDNHLVLVDLR-PMGIDGARVEKILDMASITLNKNSVPGDKSA-L 444
A L+ G+++VSGG+DNHLV VD++ +G+ G E+ LD IT NKN++P D+
Sbjct: 296 AEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPF 355
Query: 445 VPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSK 491
V GIR+G+PA TTRGF EK F +A I ++ + + +KL Q +
Sbjct: 356 VTSGIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKE 402
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/397 (48%), Positives = 258/397 (64%), Gaps = 21/397 (5%)
Query: 83 LGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
L E DP++ E++ KE RQ +LE+IASENF RAV++A GS LTNKY+EGLPG+RYYGG
Sbjct: 26 LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 85
Query: 143 NEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLPH 202
E++D +E L + RA A F + NVQP SG+ AN V A++ P +R++GLDL +
Sbjct: 86 CEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLAN 141
Query: 203 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASAY 262
GGHL+HG R++ + +E+ Y +D +T L+D D + TA+ FRPK+IIAG SAY
Sbjct: 142 GGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196
Query: 263 PRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRGG 322
PR D+ R IAD VGA L++DMAH +GLVAA + P + DVV+TT H +L G R G
Sbjct: 197 PRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSG 256
Query: 323 MIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSN 382
+I K+ + AIN+AVFPG QGGP H I G AV LK A +PEF Q + +S
Sbjct: 257 LIVGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSG 310
Query: 383 CRALASRLV-----ELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSV 437
R +A RL+ + G +VSGG+D HLVLVDLR +DG E +L IT+N+N+V
Sbjct: 311 ARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAV 370
Query: 438 PGD-KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
P D + +V G+RIG+PA+ TRGF + EF +AD I
Sbjct: 371 PNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRYYG
Sbjct: 7 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L
Sbjct: 67 GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 381
G+I K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 382 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 440
N +A+ +E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 441 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
KS V GIR+G+PA+T RGF E E +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 351 bits (900), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 199/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNKY+EG PGKRY+G
Sbjct: 7 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L
Sbjct: 67 GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 381
G+I K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 382 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 440
N +A+ +E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 441 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
KS V GIR+G+PA+T RGF E E +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 351 bits (900), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 199/393 (50%), Positives = 261/393 (66%), Gaps = 14/393 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + + +EK RQ + +ELIASEN+TS VM+A GS LTNK++EG PGKRYYG
Sbjct: 7 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYG 66
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G++L
Sbjct: 67 GCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLA 122
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +P V+ + + +PY +D +TG +DY LEK A +PK+II G SA
Sbjct: 123 HGGHLTHG--SP---VNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSA 176
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ +MR+IAD++GA L +DMAH++GLVAA V +P + VVTTTTHK+L GPRG
Sbjct: 177 YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 236
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 381
G+I K EL +N+AVFPG QGGP H I G AV LK A PEFK YQ +V
Sbjct: 237 GLILAKGG---SEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK 293
Query: 382 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 440
N +A+ +E GYK+VSGG+DNHL LVDL + G + L A+IT+NKNSVP D
Sbjct: 294 NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDP 353
Query: 441 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
KS V GIR+G+PA+T RGF E E +A ++
Sbjct: 354 KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 342 bits (876), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/393 (47%), Positives = 248/393 (63%), Gaps = 16/393 (4%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
SL D E+ ++ KE ERQ + LE IASENFT V E GS LTNKY+EG PGKRYYG
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G E++DE+ETL +R FN K+ NVQP SGS AN VY A++ P D+I+G DL
Sbjct: 65 GCEFVDEIETLAIERCKKLFNC---KFA-NVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
HGGHL+HG +VS + +ES Y + E G +DY+ + + A +PKLI+ GASA
Sbjct: 121 HGGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASA 174
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y R D+ + R+IAD +GA L D+AHI+GLV A PF Y VV++TTHK+LRGPRG
Sbjct: 175 YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 381
G+I + EL IN+A+FPG+QGGP H I AV K S E+KVY +V +
Sbjct: 235 GIIXTNDE-----ELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRT 289
Query: 382 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 440
N + LA+ L + +KLVS G+DNHLVL G + L A IT NKN+VPG+
Sbjct: 290 NAQVLANVLXDRKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEI 349
Query: 441 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADFI 473
+S + G+R+G+PA+T RGF EKE ++++I
Sbjct: 350 RSPFITSGLRLGTPALTARGFKEKEXEIVSNYI 382
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 334 bits (856), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 194/392 (49%), Positives = 250/392 (63%), Gaps = 14/392 (3%)
Query: 82 SLGEADPEVCEIITKEKERQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYG 141
++ + D E+ + +EK RQ + +ELIASEN+TS V +A GS LTNKY+EG PGKRYYG
Sbjct: 10 NIADYDAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYG 69
Query: 142 GNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAILKPHDRIMGLDLP 201
G EY+D +E L RA F D NVQP SGS ANF VYTA+L+P D ++G +L
Sbjct: 70 GCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLA 125
Query: 202 HGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTAILFRPKLIIAGASA 261
GGHL+HG +P V+ + + +PY +DES G +DYD K A +PK II G SA
Sbjct: 126 QGGHLTHG--SP---VNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSA 179
Query: 262 YPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVADPFKYCDVVTTTTHKSLRGPRG 321
Y D+ + R+IAD++GA L +D AH++GL+AA V +P + VVTTTTHK+L GPRG
Sbjct: 180 YSGVVDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG 239
Query: 322 GMIFFKKDPVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVS 381
G+I K EL +N+AVFP QGGP H I G AV LK A PEFKVYQ +V
Sbjct: 240 GLILAKGGDE---ELYKKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAK 296
Query: 382 NCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGD- 440
N +A + GYK+VSGG++NHL L+DL + G + L A+IT+NKNSVP D
Sbjct: 297 NAKAXVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDP 356
Query: 441 KSALVPGGIRIGSPAMTTRGFSEKEFVAIADF 472
KS V GIRIGSPA+T RGF E E +A +
Sbjct: 357 KSPFVTSGIRIGSPAVTRRGFKEAEVKELAGW 388
>pdb|2V0Y|A Chain A, Crystal Structure Of Apo C298s Tryptophanase From E.Coli
Length = 467
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 296 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 349
+ + +KY D++ + K P GG++ K D V E + V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLSVVQEGFPTYGGLE 307
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 409
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 410 D 410
D
Sbjct: 359 D 359
>pdb|2V1P|A Chain A, Crystal Structure Of The Apo Form Of Y74f Mutant E. Coli
Tryptophanase
Length = 467
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 296 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 349
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLXVVQEGFPTYGGLE 307
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 409
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 410 D 410
D
Sbjct: 359 D 359
>pdb|2OQX|A Chain A, Crystal Structure Of The Apo Form Of E. Coli Tryptophanase
At 1.9 A Resolution
Length = 467
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 296 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 349
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 248 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLXVVQEGFPTYGGLE 307
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 409
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 308 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVXQQAGGHAAFV 358
Query: 410 D 410
D
Sbjct: 359 D 359
>pdb|2C44|A Chain A, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|B Chain B, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|C Chain C, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|D Chain D, Crystal Structure Of E. Coli Tryptophanase
Length = 471
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 296 SVVADPFKYCDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELESAINNAV---FP---GLQ 349
+ + +KY D++ + K P GG++ K D V E V FP GL+
Sbjct: 252 QITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLE 311
Query: 350 GGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLV 409
GG LAV L + ++ Y+ ++ + L L E+G +V + H V
Sbjct: 312 GGAMER----LAVGLYDGMNLDWLAYR---IAQVQYLVDGLEEIG--VVCQQAGGHAAFV 362
Query: 410 D 410
D
Sbjct: 363 D 363
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 305 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 337
D+V T+T K + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIE 231
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 180 ANFEVYTAILKPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 239
AN ++ +L D I+ L H + + +R + + + RL E+
Sbjct: 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDXQELEARLKEAREAGA 176
Query: 240 YDMLEKTAILFRPKLIIAGASAYPRDFDYPRMRQIADAVGALLMMDMAHISGLVAASVVA 299
+L T +F +IA + + +AD AL+ +D +H G V +
Sbjct: 177 RHVLIATDGVFSXDGVIA---------NLKGVCDLADKYDALVXVDDSHAVGFVGENGRG 227
Query: 300 DPFKYCDV------VTTTTHKSLRGPRGGMIFFKKDPV 331
+YCDV +T T K+L G GG +K+ V
Sbjct: 228 -SHEYCDVXGRVDIITGTLGKALGGASGGYTAARKEVV 264
>pdb|3N72|A Chain A, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
pdb|3N72|B Chain B, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
Length = 164
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 130 YSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANFEVYTAIL 189
YS+ GK Y+GG+ I + T F+L+EN + +N++ S +Y +IL
Sbjct: 80 YSKKKEGKDYFGGSVEIPDFST---------FSLEENDYAINIERTDESENLRFIYDSIL 130
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like Domain
Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 123 GSCLTNKYSEGLPGKRYYGGNEYIDELETLCQKRALAAFNLDENKWGVNVQPLSGSPANF 182
G+ L + +GL G + + +L+TL Q + + N+ L+ SP++F
Sbjct: 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLL-LAKSPSDF 65
Query: 183 EVYTAILKPHDRIMGLDLPHG 203
+T + P+ RI L+L HG
Sbjct: 66 LAFTDMADPNLRISSLNLAHG 86
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 305 CDVVTTTTHKSLRGPRGGMIFFKKDPVLGVELE 337
D+V T+T + GPRGG++ KK+ V + +E
Sbjct: 199 ADLVVTSTDXLMEGPRGGLLAGKKELVDKIYIE 231
>pdb|4HSR|B Chain B, Crystal Structure Of A Class Iii Engineered Cephalosporin
Acylase
Length = 543
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 346 PGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRA--LASRLVELGYK----LVS 399
PG+ G PH G +A C+ HA +Y + R + + + V
Sbjct: 50 PGVPGFPHFAHNGKVAYCVTHAFMDIHDLYLEQFAGEGRTARFGNDFEPVAWSRDRIAVR 109
Query: 400 GGSDNHLVLVDLR--PMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMT 457
GG+D +V+ R P+ R L + S+ + + D +PG +
Sbjct: 110 GGADREFDIVETRHGPVIAGDPRDGAALTLRSVQFAETDLSFDCLTRMPGASTVAQLYDA 169
Query: 458 TRGF 461
TRG+
Sbjct: 170 TRGW 173
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 391 VELGYK-LVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGI 449
V +G++ ++ G + + VL+ ++ M +DGA VE D + PG L G +
Sbjct: 94 VTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVE---DEVIVAAGATVSPG--KVLESGFV 148
Query: 450 RIGSPAMTTRGFSEKE 465
+G+PA R +EKE
Sbjct: 149 YMGTPAKKVRPITEKE 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,959,184
Number of Sequences: 62578
Number of extensions: 669693
Number of successful extensions: 1549
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 40
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)