Query 009681
Match_columns 529
No_of_seqs 243 out of 1273
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 99.9 2.5E-25 5.4E-30 228.4 14.9 224 9-240 1-228 (385)
2 COG0679 Predicted permeases [G 99.8 1.3E-18 2.7E-23 177.6 16.7 179 7-188 2-186 (311)
3 TIGR00946 2a69 he Auxin Efflux 99.8 2.1E-18 4.6E-23 175.2 10.8 178 8-188 4-200 (321)
4 PRK09903 putative transporter 99.8 9E-18 1.9E-22 170.7 14.3 176 9-188 4-191 (314)
5 KOG2722 Predicted membrane pro 98.3 1.6E-06 3.6E-11 91.3 7.9 111 13-125 16-131 (408)
6 TIGR00841 bass bile acid trans 95.9 0.15 3.3E-06 52.1 13.5 137 7-150 133-274 (286)
7 PF03547 Mem_trans: Membrane t 93.4 0.23 5E-06 51.7 7.5 33 495-527 228-260 (385)
8 PF13593 DUF4137: SBF-like CPA 92.7 6.3 0.00014 41.2 16.8 110 16-128 166-283 (313)
9 PF05684 DUF819: Protein of un 90.5 2.4 5.1E-05 45.7 11.1 136 10-153 21-166 (378)
10 COG0798 ACR3 Arsenite efflux p 86.4 22 0.00047 38.3 14.7 123 10-136 182-313 (342)
11 TIGR00832 acr3 arsenical-resis 85.0 6.9 0.00015 41.2 10.4 67 79-149 256-322 (328)
12 COG0385 Predicted Na+-dependen 84.6 35 0.00076 36.4 15.2 61 82-144 236-297 (319)
13 TIGR00946 2a69 he Auxin Efflux 78.4 2.4 5.1E-05 43.7 4.0 28 500-527 171-198 (321)
14 COG5505 Predicted integral mem 66.8 96 0.0021 33.5 12.4 137 14-154 31-174 (384)
15 PRK04972 putative transporter; 59.3 3E+02 0.0065 31.4 15.6 26 7-33 5-32 (558)
16 PLN03159 cation/H(+) antiporte 56.5 41 0.00089 40.0 8.5 115 36-153 313-437 (832)
17 TIGR00783 ccs citrate carrier 51.4 63 0.0014 34.9 8.2 83 17-100 207-297 (347)
18 PF04235 DUF418: Protein of un 44.5 2.1E+02 0.0046 26.4 9.7 88 13-101 61-155 (163)
19 PF05982 DUF897: Domain of unk 37.7 3.6E+02 0.0079 29.1 11.1 133 16-153 1-139 (327)
20 PRK10835 hypothetical protein; 37.6 4.7E+02 0.01 28.1 12.2 30 16-46 198-228 (373)
21 PF09323 DUF1980: Domain of un 37.2 1.2E+02 0.0026 29.2 7.0 40 44-83 3-43 (182)
22 COG1230 CzcD Co/Zn/Cd efflux s 37.2 5E+02 0.011 27.6 12.0 143 5-148 52-205 (296)
23 TIGR00383 corA magnesium Mg(2+ 36.6 3.3E+02 0.0071 27.9 10.5 22 46-67 264-285 (318)
24 COG2991 Uncharacterized protei 36.2 36 0.00077 29.2 2.8 36 7-45 4-39 (77)
25 COG0598 CorA Mg2+ and Co2+ tra 36.1 2.6E+02 0.0057 29.2 9.8 62 5-72 233-297 (322)
26 COG4393 Predicted membrane pro 33.2 85 0.0019 34.1 5.7 48 7-64 5-52 (405)
27 PF13593 DUF4137: SBF-like CPA 32.8 3.4E+02 0.0073 28.6 10.0 109 45-153 31-147 (313)
28 PF11457 DUF3021: Protein of u 31.9 3.2E+02 0.0069 24.5 8.6 55 33-87 63-118 (136)
29 KOG1650 Predicted K+/H+-antipo 31.5 88 0.0019 37.1 6.0 115 37-154 302-423 (769)
30 PRK05771 V-type ATP synthase s 30.1 8.2E+02 0.018 28.2 13.3 39 23-62 374-412 (646)
31 PRK05326 potassium/proton anti 29.3 3.4E+02 0.0074 30.6 10.0 50 17-67 247-296 (562)
32 PF03956 DUF340: Membrane prot 28.2 4.3E+02 0.0093 26.1 9.3 46 108-154 92-137 (191)
33 PF03616 Glt_symporter: Sodium 27.5 3.1E+02 0.0067 29.6 8.9 52 45-96 279-334 (368)
34 PRK09546 zntB zinc transporter 25.8 1.7E+02 0.0037 30.4 6.4 23 45-67 269-291 (324)
35 PF01544 CorA: CorA-like Mg2+ 25.1 55 0.0012 32.3 2.5 28 39-67 234-261 (292)
36 TIGR00807 malonate_madL malona 25.1 4.8E+02 0.01 24.6 8.3 78 15-94 38-117 (125)
37 TIGR00840 b_cpa1 sodium/hydrog 24.4 3.6E+02 0.0077 30.9 9.0 32 43-74 65-98 (559)
38 KOG2568 Predicted membrane pro 24.3 2.4E+02 0.0051 32.3 7.4 50 16-67 286-335 (518)
39 TIGR03802 Asp_Ala_antiprt aspa 23.8 6.4E+02 0.014 28.8 10.9 106 12-120 10-137 (562)
40 PRK03562 glutathione-regulated 23.5 7.4E+02 0.016 28.6 11.4 30 37-67 261-290 (621)
41 PRK03659 glutathione-regulated 22.6 5.7E+02 0.012 29.2 10.3 48 17-67 32-80 (601)
42 PF02932 Neur_chan_memb: Neuro 22.5 2.8E+02 0.006 24.6 6.3 16 14-29 2-17 (237)
43 PF05297 Herpes_LMP1: Herpesvi 21.6 31 0.00067 36.7 0.0 21 42-62 80-100 (381)
44 PF03817 MadL: Malonate transp 20.8 6.2E+02 0.014 23.8 8.2 75 15-91 38-114 (125)
45 PRK03659 glutathione-regulated 20.4 6.5E+02 0.014 28.8 10.1 46 19-67 242-287 (601)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.93 E-value=2.5e-25 Score=228.43 Aligned_cols=224 Identities=31% Similarity=0.421 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCc-c-hHHHHHHH-HHHHHHHHHH
Q 009681 9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYA-M-NFRFIAAD-TLQKIIMLFV 85 (529)
Q Consensus 9 ~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~-l-n~~fIla~-~L~~lIvflv 85 (529)
+++.+++|+|+++++||+++|+ |++++++.+.++++|+++++|||+|..+.+....+ + ++.++... .+..++.+++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999995 99999999999999999999999999999976443 3 44444332 2223333333
Q ss_pred HHHHHHHhcCCCchhhhhheeE-EeecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 009681 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ 164 (529)
Q Consensus 86 l~L~~r~~k~~~ld~~itlfsL-ssf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV~LlE~~~ak~li~k~ 164 (529)
.++..++++.+..+ ...+.+ ++|+|++++|+|++.++||++++.+++++.+++++++|+++..+++.++++....++
T Consensus 80 ~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 157 (385)
T PF03547_consen 80 GFLLSRLFRLPKEW--RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE 157 (385)
T ss_pred HHHHHHhcCCCccc--ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence 44555555544333 334444 588999999999999999999999999999999999999999999998887777666
Q ss_pred HHHhhcceeEeeecCceecccCCCccccccccCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCceeeecc
Q 009681 165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240 (529)
Q Consensus 165 f~~t~~sIv~~~i~~~v~sl~G~~p~~~~~ev~~~g~~~v~vr~s~~s~~~~~~~~~~~~tpr~snlt~~eiys~~ 240 (529)
..++..+....+.+.+..+.++.+|.+++.+++++++.+.+.+++.+++.+... .+|+++|.+++|.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 228 (385)
T PF03547_consen 158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS-----TSPSPSNSTGAEQKSSN 228 (385)
T ss_pred cccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-----cCCcccccchhhhhhhh
Confidence 667778888999999999999999999999999999999999988888776553 48999999999999877
No 2
>COG0679 Predicted permeases [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=177.59 Aligned_cols=179 Identities=22% Similarity=0.428 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHHHHHH
Q 009681 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV 85 (529)
Q Consensus 7 M~~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l-n~~fIla~~L~~lIvflv 85 (529)
|+.++..++|+|++|++||+++|+ ++++++.++.++++|+|+++|||+|+.+.+++.+.. ++.++++.+++.++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999995 999999999999999999999999999999998877 777777777766666666
Q ss_pred H-HHHHHHhcCCCchhhhhheeE-EeecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccch--hh
Q 009681 86 L-GIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKM--LI 161 (529)
Q Consensus 86 l-~L~~r~~k~~~ld~~itlfsL-ssf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV~LlE~~~ak~--li 161 (529)
. ++.+++++++ .++.. .+.+ +.|+|++++|+|++..+||++++.+++++...+.++.++++++.++..+.+. ..
T Consensus 81 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~ 158 (311)
T COG0679 81 LALIGRFLFKLD-KRETV-IFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSL 158 (311)
T ss_pred HHHHHHHHhccc-hhhHH-HHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 4 4455555544 33322 3333 5789999999999999999999999999999999999999999988765544 23
Q ss_pred hhhHHHhhcc-eeEeeecCceecccCCC
Q 009681 162 MEQFPETAAS-IVSFKVDSDVVSLDGRD 188 (529)
Q Consensus 162 ~k~f~~t~~s-Iv~~~i~~~v~sl~G~~ 188 (529)
++.+.+...+ ++...+-+-++++.|.+
T Consensus 159 ~~~~~~~~~nP~i~a~i~g~~~~~~~i~ 186 (311)
T COG0679 159 LSVLKKLLTNPLIIALILGLLLNLLGIS 186 (311)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHcCCC
Confidence 3334444444 45556667777877765
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.76 E-value=2.1e-18 Score=175.20 Aligned_cols=178 Identities=28% Similarity=0.321 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcC--cc-hHHHHHHHHHHHHHHH
Q 009681 8 YLVLTAVVPLYVAMILAYGS-VRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY--AM-NFRFIAADTLQKIIML 83 (529)
Q Consensus 8 ~~VLsaILPLFlIIaLGYll-~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s--~l-n~~fIla~~L~~lIvf 83 (529)
..++..++|+|++|++||++ +| +|++++++.+.++++++|+++||++|+++.+.+.. .. .+.+++...+..++.+
T Consensus 4 ~~~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T TIGR00946 4 YVILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSY 82 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999 79 59999999999999999999999999999987664 22 3444444444444445
Q ss_pred HHHHHHHH-HhcCCCchhhhhheeE-EeecchhhhHHHHHHHHhCCCc---chhHHHHHHHHHHHHHHHHHHHHHhccc-
Q 009681 84 FVLGIWTN-FTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYS---GSLMVQVVVLQCIIWYTLLLFLFEYRGA- 157 (529)
Q Consensus 84 lvl~L~~r-~~k~~~ld~~itlfsL-ssf~NtgfmGIPLl~aLyGeeg---l~lav~ivVlq~II~~TLgV~LlE~~~a- 157 (529)
++.++..+ +++++..+ ...+.+ ++++|++|+|+|++.++||+++ +.+++.+.+.++++.|++++++......
T Consensus 83 ~l~~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (321)
T TIGR00946 83 ALIWLITKPLFKADYGK--LSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAG 160 (321)
T ss_pred HHHHHHHHHHHhcccch--hhHHHHHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhcccccc
Confidence 44444333 55544444 334444 5789999999999999999999 5666667777788889999877653321
Q ss_pred -c-h-hh-----hhhHHHhhcce-eEeeecCceecccCCC
Q 009681 158 -K-M-LI-----MEQFPETAASI-VSFKVDSDVVSLDGRD 188 (529)
Q Consensus 158 -k-~-li-----~k~f~~t~~sI-v~~~i~~~v~sl~G~~ 188 (529)
+ + .. .+.+.+...++ ++-.+-+-++++.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~~i~ 200 (321)
T TIGR00946 161 GEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK 200 (321)
T ss_pred ccccchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhc
Confidence 1 1 11 13344455443 4445566678887765
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.75 E-value=9e-18 Score=170.74 Aligned_cols=176 Identities=21% Similarity=0.296 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc--hHHHHHHHHHHHHHHHHHH
Q 009681 9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM--NFRFIAADTLQKIIMLFVL 86 (529)
Q Consensus 9 ~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l--n~~fIla~~L~~lIvflvl 86 (529)
.+++.++|+|++|++||+++| +++++++..+.+|++++|+++||++|+++++.+.++. ++.+++..++..++++++.
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 367899999999999999999 5999999999999999999999999999998876543 4555555455555555443
Q ss_pred HHH-HHHhcCCCchhhhhheeE-EeecchhhhHHHHHHHHhCCCc---chhHHHHHHHHHHHHHHHHHHHHHhccc---c
Q 009681 87 GIW-TNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYS---GSLMVQVVVLQCIIWYTLLLFLFEYRGA---K 158 (529)
Q Consensus 87 ~L~-~r~~k~~~ld~~itlfsL-ssf~NtgfmGIPLl~aLyGeeg---l~lav~ivVlq~II~~TLgV~LlE~~~a---k 158 (529)
++. +++++++..+. ....+ ++++|++|+|+|++.++||+++ +.+++ +..+++++.|++++++++..+. +
T Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 159 (314)
T PRK09903 83 WFGCYKFFKRTHAEA--AVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAI-ISIIVNAITIPIGLYLLNPSSGADGK 159 (314)
T ss_pred HHHHHHHhcCCcchh--hHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHH-HHHHHHHHHHHHHHHHHccccccccc
Confidence 333 33445443331 12222 5789999999999999999994 43333 4456788899999999875321 1
Q ss_pred h-hhhhhHHHhhcceeEe-eecCceecccCCC
Q 009681 159 M-LIMEQFPETAASIVSF-KVDSDVVSLDGRD 188 (529)
Q Consensus 159 ~-li~k~f~~t~~sIv~~-~i~~~v~sl~G~~ 188 (529)
+ ..++.+.+...++..+ .+-+-++++.|.+
T Consensus 160 ~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~ 191 (314)
T PRK09903 160 KNSNLSALISAAKEPVVWAPVLATILVLVGVK 191 (314)
T ss_pred cchHHHHHHHHHhchHHHHHHHHHHHHHcCCC
Confidence 1 1233444444444333 3444467777755
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=98.29 E-value=1.6e-06 Score=91.26 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCChhhHhHHHHHHHHHHHHHHHHHHhhcC-CcCcc-hHHHHHHH-HHHHHHHHHHHH
Q 009681 13 AVVPLYVAMILAYGSVRWW--KIFSPDQCSGINRFVAIFAVPLLSFHFISTN-DPYAM-NFRFIAAD-TLQKIIMLFVLG 87 (529)
Q Consensus 13 aILPLFlIIaLGYll~R~~--kIft~e~~sgLNrfVf~VALPaLLF~sIs~~-d~s~l-n~~fIla~-~L~~lIvflvl~ 87 (529)
.++-++++-.+||++.. . +++.++..+.+|++||++..|||+|..+.+. ...++ +|.|+=.. .+..++-.++.+
T Consensus 16 pvlqvl~i~~~G~~lA~-~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~ 94 (408)
T KOG2722|consen 16 PVLQVLLITLVGFLLAS-DYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGW 94 (408)
T ss_pred cHHHHHHHHHHHHHHhc-cccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56778899999999976 4 9999999999999999999999999999877 44455 88887443 444555555556
Q ss_pred HHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHh
Q 009681 88 IWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMY 125 (529)
Q Consensus 88 L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLy 125 (529)
+..++.|-++.. ...+.+.|+++|.+.+-+-|+.++.
T Consensus 95 lv~~I~rppp~~-~~fiia~~a~GN~gnlpL~Lv~alc 131 (408)
T KOG2722|consen 95 LVVKILRPPPQL-RGFIIACCAFGNSGNLPLILVPALC 131 (408)
T ss_pred HHhheecCChhh-cCeEEEEeecCCcCCcHHHHhHHHh
Confidence 666666543322 1334455789999999999999985
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.88 E-value=0.15 Score=52.14 Aligned_cols=137 Identities=7% Similarity=0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHH---HHHHHHHHHHHHHHhhcC--CcCcchHHHHHHHHHHHHH
Q 009681 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINR---FVAIFAVPLLSFHFISTN--DPYAMNFRFIAADTLQKII 81 (529)
Q Consensus 7 M~~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNr---fVf~VALPaLLF~sIs~~--d~s~ln~~fIla~~L~~lI 81 (529)
+..++..++-+++=+++|.+++++. ++..+.+.+ +.. +.+=++++..+..+ .+.+..+..+++.++..++
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~----p~~~~~~~~~~~~s~-~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKL----PQIAKIILKVGLISV-FLLSVIIAVVGGINVENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHhCchHHH-HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 4444334666677778888888852 222222222 211 11112222222222 1111133444444444455
Q ss_pred HHHHHHHHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHH
Q 009681 82 MLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLF 150 (529)
Q Consensus 82 vflvl~L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV~ 150 (529)
.|++.++..+.++.+..+. .++..-+..-|.+ +|+++....|+++.....+.+.++++++...+..+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~-~t~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARC-RTISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHHhCCCHhhh-eeeeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555455555555443231 2332225668887 99999999998766555666666666655554443
No 7
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.40 E-value=0.23 Score=51.66 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHhhh
Q 009681 495 VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIA 527 (529)
Q Consensus 495 vm~~~~~~~v~~kl~~npn~y~~~~g~~w~~i~ 527 (529)
-|+|..+.++++|+++||++|+.++|++|+++.
T Consensus 228 ~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~ 260 (385)
T PF03547_consen 228 NSTRKKLKKSILKLFKNPPLIAIILGLIIGLIP 260 (385)
T ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 388888999999999999999999999999985
No 8
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=92.68 E-value=6.3 Score=41.21 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcC---C-cCcchHHHHHHHHHHHHHHHH----HHH
Q 009681 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN---D-PYAMNFRFIAADTLQKIIMLF----VLG 87 (529)
Q Consensus 16 PLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~---d-~s~ln~~fIla~~L~~lIvfl----vl~ 87 (529)
-+++=+++|-+++||.+-.- +..+..-+.+-.+++-++++..+++. + ..+.+...++......+.+++ +.+
T Consensus 166 ~vllP~~~Gq~~r~~~~~~~-~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 244 (313)
T PF13593_consen 166 TVLLPLVLGQLLRRWVPKWV-ARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGW 244 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666665421111 11233444455566666666666554 1 122333222222222222221 223
Q ss_pred HHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHhCCC
Q 009681 88 IWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (529)
Q Consensus 88 L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyGee 128 (529)
...+.++.++.|.... .+|+--.+.-+|+|++..+|++.
T Consensus 245 ~~~r~~~~~~~d~iA~--~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 245 LAARLLGFSRPDRIAV--LFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHhhcCCChhhEEEE--EEEcCcCcchhHHHHHHHHcccc
Confidence 3444444444442222 22444788999999999999975
No 9
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=90.51 E-value=2.4 Score=45.71 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHHHH
Q 009681 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVL 86 (529)
Q Consensus 10 VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l---n~~fIla~~L~~lIvflvl 86 (529)
.+..+-|+.+++++|.++.-. ++++....+.+-.++..+.+|+.++..+.+.|+.++ ..+.+++++++.+.+.+-.
T Consensus 21 ~f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999995 999655567899999999999999999999999865 5677777766655544333
Q ss_pred HHHHHHhcC--CCchhh-hhheeEEee----cchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009681 87 GIWTNFTKN--GSLEWM-ITIFSLSTL----PNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFE 153 (529)
Q Consensus 87 ~L~~r~~k~--~~ld~~-itlfsLssf----~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV~LlE 153 (529)
.+...+++. +..-|. ...+. ++| .|..-++ ..++-.. .......+.++++.....++++.
T Consensus 100 ~va~~l~~~~l~~~~wk~ag~l~-gsyiGGs~N~~Av~-----~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~ 166 (378)
T PF05684_consen 100 VVAFLLFGGFLGPEGWKIAGMLA-GSYIGGSVNFVAVA-----EALGVSD-SLFAAALAADNVVMALWFAFLLA 166 (378)
T ss_pred HHHHHHHhhcccchHHHHHHHHH-hcccCchhHHHHHH-----HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 232223322 233454 23322 334 4444333 2355443 24444555555554444444444
No 10
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=86.42 E-value=22 Score=38.30 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCc--Ccc--hHHHH----HHHHHHHHH
Q 009681 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDP--YAM--NFRFI----AADTLQKII 81 (529)
Q Consensus 10 VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~--s~l--n~~fI----la~~L~~lI 81 (529)
++..++|+.+-+..=|.+.|+ +- .+...+.+-..+--++++.|++.-+.--.. +.+ ++.-+ ..+.+...+
T Consensus 182 ~lyl~iPli~G~lTR~i~~k~-kg-~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~ 259 (342)
T COG0798 182 LLYLGIPLIAGVLTRYILIKK-KG-REWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLL 259 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cc-chHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 455777887777777788775 32 222334444444445556555543221111 111 22212 223344444
Q ss_pred HHHHHHHHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHhC-CCcchhHHHH
Q 009681 82 MLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGSLMVQV 136 (529)
Q Consensus 82 vflvl~L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyG-eegl~lav~i 136 (529)
++++.++..+..+-+-.+ ..-.++++-+|+-=+.+++..++|| +++...+..+
T Consensus 260 ~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vi 313 (342)
T COG0798 260 MFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAALATVV 313 (342)
T ss_pred HHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccchhhhhc
Confidence 555544555555543334 2333334558999999999999999 5554444333
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=85.01 E-value=6.9 Score=41.19 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHH
Q 009681 79 KIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLL 149 (529)
Q Consensus 79 ~lIvflvl~L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV 149 (529)
.++.+++.++..+..|.+..+ .....+++--.+.-+|+++....||+... ++...+...++..+..+
T Consensus 256 ~~~~~~lg~~~~r~~~l~~~~--~~a~~~e~g~qN~~lai~lA~~~f~~~~~--~a~~~~~~~l~e~~~~~ 322 (328)
T TIGR00832 256 FYIMFFLTFALAKKLGLPYSI--TAPAAFTGASNNFELAIAVAISLFGLNSG--AALATVVGPLIEVPVML 322 (328)
T ss_pred HHHHHHHHHHHHHHhCcChhh--hhhheehhhhhhHHHHHHHHHHhCCCCcc--cHHHHHhhhhhehhhhh
Confidence 334444444444555544334 22333343455678999999999987542 23333444444444433
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=84.58 E-value=35 Score=36.41 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCchhhhhheeEEeecchhhhHHHHHHHHhC-CCcchhHHHHHHHHHHHH
Q 009681 82 MLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGSLMVQVVVLQCIIW 144 (529)
Q Consensus 82 vflvl~L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyG-eegl~lav~ivVlq~II~ 144 (529)
.|.+.+...|+++.+..+. +++ ++|+---++-.|+|+...-++ +....+.+++.++|++..
T Consensus 236 g~~~gy~~ar~~g~~~a~~-iti-~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~ 297 (319)
T COG0385 236 GLLLGYFGARLLGFDKADE-ITI-AIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSG 297 (319)
T ss_pred HHHHHHHHHHHhCCChhhe-eeE-EEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHH
Confidence 3333344456666554441 233 334333446689999999445 333344455555555433
No 13
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=78.43 E-value=2.4 Score=43.72 Aligned_cols=28 Identities=39% Similarity=0.897 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHhhh
Q 009681 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIA 527 (529)
Q Consensus 500 ~~~~v~~kl~~npn~y~~~~g~~w~~i~ 527 (529)
.+..++||+++||..||+++|++|.+..
T Consensus 171 ~~~~~~~~~~~nP~iia~i~Gl~~~~~~ 198 (321)
T TIGR00946 171 MLIFVWKKLIKFPPLWAPLLSVILSLVG 198 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 4467899999999999999999999864
No 14
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=66.81 E-value=96 Score=33.47 Aligned_cols=137 Identities=13% Similarity=0.038 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHHHHHHHH
Q 009681 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWT 90 (529)
Q Consensus 14 ILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l---n~~fIla~~L~~lIvflvl~L~~ 90 (529)
.+|-.++|-+|-..-...+.|+ .|+....-|-+..+|+.++.-+.+-|..++ ..+++..++.+.+.+++-..++.
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4555555555554433348884 677888888888999999988888888754 55666555554444443334444
Q ss_pred HHhcCCC-chhhhhheeEEee-cchhhhHHHHHHHHhCCCc--chhHHHHHHHHHHHHHHHHHHHHHh
Q 009681 91 NFTKNGS-LEWMITIFSLSTL-PNTLVMGIPLLIAMYGEYS--GSLMVQVVVLQCIIWYTLLLFLFEY 154 (529)
Q Consensus 91 r~~k~~~-ld~~itlfsLssf-~NtgfmGIPLl~aLyGeeg--l~lav~ivVlq~II~~TLgV~LlE~ 154 (529)
.+.+..- .-|.++-...+++ +-..+| .-+++.+--.+ ..+....+.+.--+|+.+.+.+..+
T Consensus 109 p~~ksf~gd~Wka~gmi~gSytGGSaNm--AAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy 174 (384)
T COG5505 109 PLLKSFIGDLWKAGGMISGSYTGGSANM--AAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPY 174 (384)
T ss_pred HHHhhhcchHHhhhhheeeeeeCCcchH--HHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333211 2243221111344 333333 22344443332 2344444444445666666665543
No 15
>PRK04972 putative transporter; Provisional
Probab=59.29 E-value=3e+02 Score=31.39 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhhcCC
Q 009681 7 LYLVL--TAVVPLYVAMILAYGSVRWWKI 33 (529)
Q Consensus 7 M~~VL--saILPLFlIIaLGYll~R~~kI 33 (529)
+.+.+ +.++.+|+.+++||+++|. ++
T Consensus 5 ~~~~l~~~~~~~lf~~i~lG~~lG~i-~~ 32 (558)
T PRK04972 5 VADLLNGNYILLLFVVLALGLCLGKL-RL 32 (558)
T ss_pred HHHHhccCChHHHHHHHHHHHhhhce-EE
Confidence 34445 3689999999999999994 65
No 16
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=56.53 E-value=41 Score=39.97 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=56.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc-h---HHHHHHHHHHHHHHH-HHHHHHHHHhcCCCchhhhhheeEEee
Q 009681 36 PDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-N---FRFIAADTLQKIIML-FVLGIWTNFTKNGSLEWMITIFSLSTL 110 (529)
Q Consensus 36 ~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l-n---~~fIla~~L~~lIvf-lvl~L~~r~~k~~~ld~~itlfsLssf 110 (529)
.+....+..++..+++|+.....=.+.|+..+ + +.+++.+++..++.= +..++..++.+.+..+.. ...+ ..
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal--~lG~-lm 389 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGI--TLGF-LM 389 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH--HHHH-HH
Confidence 34567788889999999998887777777544 2 222111111111111 112344455554433421 1111 11
Q ss_pred cchhhhHHHHHHH-----HhCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009681 111 PNTLVMGIPLLIA-----MYGEYSGSLMVQVVVLQCIIWYTLLLFLFE 153 (529)
Q Consensus 111 ~NtgfmGIPLl~a-----LyGeegl~lav~ivVlq~II~~TLgV~LlE 153 (529)
.--+.+.+-++.. +.+++....+++..++.+.+..++...++.
T Consensus 390 ~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 390 NTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred hcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 2224444444433 445555445454555566666666655544
No 17
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=51.35 E-value=63 Score=34.92 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHh---HHHHHHHHHHHHHHHH-HHhhcCCcCcc----hHHHHHHHHHHHHHHHHHHHH
Q 009681 17 LYVAMILAYGSVRWWKIFSPDQCS---GINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLGI 88 (529)
Q Consensus 17 LFlIIaLGYll~R~~kIft~e~~s---gLNrfVf~VALPaLLF-~sIs~~d~s~l----n~~fIla~~L~~lIvflvl~L 88 (529)
...++.+|-+++.. ++++++-.+ ...+|+.....+.+++ ..+...++.++ .+.+++..+...+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 56678888899995 999977544 4555666666666666 56777787654 344444444333333333445
Q ss_pred HHHHhcCCCchh
Q 009681 89 WTNFTKNGSLEW 100 (529)
Q Consensus 89 ~~r~~k~~~ld~ 100 (529)
.-++.+--+.|.
T Consensus 286 vGKllG~YPiE~ 297 (347)
T TIGR00783 286 LGKLMGMYPVES 297 (347)
T ss_pred HHHHhCCChHHH
Confidence 556666555663
No 18
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=44.48 E-value=2.1e+02 Score=26.44 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC------CChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcchHHHHHHHHHHHHHHH-HH
Q 009681 13 AVVPLYVAMILAYGSVRWWKI------FSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIML-FV 85 (529)
Q Consensus 13 aILPLFlIIaLGYll~R~~kI------ft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~ln~~fIla~~L~~lIvf-lv 85 (529)
..+-++.+.++..+..+. +. +.+-..-.++..+....+=.++|....-.-..++.....+.+++...++. ++
T Consensus 61 ~~~a~~y~~l~~ll~~~~-~~~~~~~~l~~~GrmaLT~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~ 139 (163)
T PF04235_consen 61 PLLALGYVALLILLCQKR-PRQRLLRPLAAVGRMALTNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLF 139 (163)
T ss_pred HHHHHHHHHHHHHHHHHc-CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHH
Confidence 334444444455555542 22 22223334555555555555555433222222333322322223222222 23
Q ss_pred HHHHHHHhcCCCchhh
Q 009681 86 LGIWTNFTKNGSLEWM 101 (529)
Q Consensus 86 l~L~~r~~k~~~ld~~ 101 (529)
..+|.+.+++++.||.
T Consensus 140 s~~W~~~f~~GPlE~l 155 (163)
T PF04235_consen 140 SYLWLRRFRRGPLEWL 155 (163)
T ss_pred HHHHHHhcCcCcHHHH
Confidence 4678888999998864
No 19
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=37.69 E-value=3.6e+02 Score=29.13 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHH---hhcCCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009681 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHF---ISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNF 92 (529)
Q Consensus 16 PLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~s---Is~~d~s~ln~~fIla~~L~~lIvflvl~L~~r~ 92 (529)
|..+..++|.++... | -|=+.-+.+.+++-.+.+=+.=|+. +.+.++.++-...+++..++.++-+....+.+++
T Consensus 1 P~vLFF~LG~~A~~~-k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr~~ 78 (327)
T PF05982_consen 1 PVVLFFILGIIAALL-K-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILRRL 78 (327)
T ss_pred CchHHHHHHHHHHHH-c-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667777777664 2 2334456777877777776776753 3344443333333344444444444444556665
Q ss_pred hcCCCchhhhhheeEEeecchhhhHHHHHHHHhCC---CcchhHHHHHHHHHHHHHHHHHHHHH
Q 009681 93 TKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGE---YSGSLMVQVVVLQCIIWYTLLLFLFE 153 (529)
Q Consensus 93 ~k~~~ld~~itlfsLssf~NtgfmGIPLl~aLyGe---egl~lav~ivVlq~II~~TLgV~LlE 153 (529)
.|-+..|. .++- +.|+.....-+-...+.... +.-.++..+.++.-+--..+++++.+
T Consensus 79 ~~l~~~da-aAiA--AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~ 139 (327)
T PF05982_consen 79 GKLDRADA-AAIA--AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLAR 139 (327)
T ss_pred cCCChhhH-HHHH--HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHH
Confidence 66554452 1221 34555555555555555543 33445666655544433334455544
No 20
>PRK10835 hypothetical protein; Provisional
Probab=37.55 E-value=4.7e+02 Score=28.09 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChh-hHhHHHHHH
Q 009681 16 PLYVAMILAYGSVRWWKIFSPD-QCSGINRFV 46 (529)
Q Consensus 16 PLFlIIaLGYll~R~~kIft~e-~~sgLNrfV 46 (529)
.++.++.+|..+.| +++++++ ..+.+.++.
T Consensus 198 ~~l~lfLlG~~l~R-~g~~~~~~~~~~~~~~~ 228 (373)
T PRK10835 198 QLAGMMLLGAALMR-SGWLKGQFSLRHYRRTA 228 (373)
T ss_pred HHHHHHHHHHHHHh-cccccCCcchHHHHHHH
Confidence 35678999999999 5999853 233344443
No 21
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=37.23 E-value=1.2e+02 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHHHH
Q 009681 44 RFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIML 83 (529)
Q Consensus 44 rfVf~VALPaLLF~sIs~~d~s~l-n~~fIla~~L~~lIvf 83 (529)
|++..+++=+++|+.+.+-++... ++++.....++.++++
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ 43 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLL 43 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHH
Confidence 566777888888888777766543 6665544444444443
No 22
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=37.15 E-value=5e+02 Score=27.58 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CC-----hhhHhHHHHHHHHHHHHHHHH-HHhhcC-CcCcc-hHHHHHH
Q 009681 5 KDLYLVLTAVVPLYVAMILAYGSVRWWKI--FS-----PDQCSGINRFVAIFAVPLLSF-HFISTN-DPYAM-NFRFIAA 74 (529)
Q Consensus 5 ~dM~~VLsaILPLFlIIaLGYll~R~~kI--ft-----~e~~sgLNrfVf~VALPaLLF-~sIs~~-d~s~l-n~~fIla 74 (529)
.|-.+.++-.+-+++....-++.+|. +- ++ -+....+.+-++.+++-++++ .++.+. .+..+ ...+++.
T Consensus 52 ADa~Hml~D~~al~lal~A~~~a~r~-~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml~v 130 (296)
T COG1230 52 ADALHMLSDALALLLALIAIKLARRP-ATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLVV 130 (296)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHH
Confidence 45556666555555555555555552 11 11 111123333333333444433 355544 34455 3233333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhhhheeEE-eecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHH
Q 009681 75 DTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLL 148 (529)
Q Consensus 75 ~~L~~lIvflvl~L~~r~~k~~~ld~~itlfsLs-sf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLg 148 (529)
.+++.++-++..++..+-..++.......+-.++ ..+|.+.+---++...+|-...-+++-+++...++..+..
T Consensus 131 a~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~ 205 (296)
T COG1230 131 AIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPILSIVIALLILSSAWP 205 (296)
T ss_pred HHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHH
Confidence 3444444443333222110001111113333333 6689999999999999997666655544444444444433
No 23
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.64 E-value=3.3e+02 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.082 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhcCCcCcc
Q 009681 46 VAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 46 Vf~VALPaLLF~sIs~~d~s~l 67 (529)
+.-+++|.-++.+++..++..|
T Consensus 264 vt~IflP~t~IaGiyGMNf~~m 285 (318)
T TIGR00383 264 VSTIFIPLTFIAGIYGMNFKFM 285 (318)
T ss_pred HHHHHHHHHHHHHHHhCCcccC
Confidence 4457788888888998887644
No 24
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.16 E-value=36 Score=29.23 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHH
Q 009681 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRF 45 (529)
Q Consensus 7 M~~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrf 45 (529)
++..|...+-+.+.|.+||+.+|. -| ...|.+|..+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~krk-~I--~GSCGGi~al 39 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKRK-SI--KGSCGGIAAL 39 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheecc-cc--ccccccHHhh
Confidence 456777888889999999999993 33 3457777655
No 25
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=36.13 E-value=2.6e+02 Score=29.23 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc---hHHHH
Q 009681 5 KDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFI 72 (529)
Q Consensus 5 ~dM~~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l---n~~fI 72 (529)
.++...+..++-...=..++.+.-+. +..=.+=..+--+++|.-++.+++..++..| ++.+-
T Consensus 233 ~~~~~~~~~~l~~l~d~~~s~is~~~------N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~G 297 (322)
T COG0598 233 IEMLEALRERLSSLLDAYLSLINNNQ------NEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYG 297 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCccc
Confidence 44555555666655556666666663 2222233345557888888899998888754 66653
No 26
>COG4393 Predicted membrane protein [Function unknown]
Probab=33.23 E-value=85 Score=34.05 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCc
Q 009681 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDP 64 (529)
Q Consensus 7 M~~VLsaILPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~ 64 (529)
+.+++.+++|+-+++++-|--+- + .-..++.++++=+-.|..+..+..
T Consensus 5 Fvs~Lqs~LP~alLlg~~w~~~p---~-------~~~~~vvwl~~L~~~~g~~~~~y~ 52 (405)
T COG4393 5 FVSFLQSVLPLALLLGITWNKKP---I-------FKSFFVVWLGFLFGYFGFFIAAYF 52 (405)
T ss_pred HHHHHHHHHHHHHHHcCCccccc---c-------hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999988875443222 2 234567777777777776655533
No 27
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=32.75 E-value=3.4e+02 Score=28.55 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhcCCcCcc-----hHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCchhhhhheeEEeecchhhhH
Q 009681 45 FVAIFAVPLLSFHFISTNDPYAM-----NFRFIAADTLQKIIMLFVL-GIWTNFTK-NGSLEWMITIFSLSTLPNTLVMG 117 (529)
Q Consensus 45 fVf~VALPaLLF~sIs~~d~s~l-----n~~fIla~~L~~lIvflvl-~L~~r~~k-~~~ld~~itlfsLssf~NtgfmG 117 (529)
.+..+++-.+.|..=.+.+.+++ +|++.+...+...+++-++ +...++.. ....+...++..+++.|-|.--+
T Consensus 31 ~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~ 110 (313)
T PF13593_consen 31 YVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSSS 110 (313)
T ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHH
Confidence 44555555555544445555543 6777665544444444332 22222232 11223224454446678777777
Q ss_pred HHHHHHHhCCCcchhHHHHH-HHHHHHHHHHHHHHHH
Q 009681 118 IPLLIAMYGEYSGSLMVQVV-VLQCIIWYTLLLFLFE 153 (529)
Q Consensus 118 IPLl~aLyGeegl~lav~iv-Vlq~II~~TLgV~LlE 153 (529)
+-+....-|++...++.... -+-.++..++.+.++-
T Consensus 111 v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 111 VVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 77777777877754332221 2333455555555444
No 28
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=31.85 E-value=3.2e+02 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCChhhHhHHHHHHHHHHHHHHHHHHhhcC-CcCcchHHHHHHHHHHHHHHHHHHH
Q 009681 33 IFSPDQCSGINRFVAIFAVPLLSFHFISTN-DPYAMNFRFIAADTLQKIIMLFVLG 87 (529)
Q Consensus 33 Ift~e~~sgLNrfVf~VALPaLLF~sIs~~-d~s~ln~~fIla~~L~~lIvflvl~ 87 (529)
+++.|..+-+.+.+.++.+-++.+..+.-. .....+...++.+.+..+++|++.+
T Consensus 63 if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~~~~~fi~IYliIw 118 (136)
T PF11457_consen 63 IFEIERWSLLKQTIIHFIITYAIFLILAYLLGWFPLSVISLLIFILIFIIIYLIIW 118 (136)
T ss_pred HHcccchhHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 455567777888888888887777655432 2222222223333334445555433
No 29
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=31.47 E-value=88 Score=37.09 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=66.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCchhhhhheeEEeecchh
Q 009681 37 DQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV-LGIWTNFTKNGSLEWMITIFSLSTLPNTL 114 (529)
Q Consensus 37 e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l-n~~fIla~~L~~lIvflv-l~L~~r~~k~~~ld~~itlfsLssf~Ntg 114 (529)
.-.+.+..++..+++|+.+...-.+.++..+ .+..+...+....++.++ .....++.|-+..++...-+ .+.+-+
T Consensus 302 ~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~---lm~~kg 378 (769)
T KOG1650|consen 302 ALIEKLEDLVSGLLLPLYFAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGL---LMSTKG 378 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH---HHHhhh
Confidence 5677889999999999999888888887654 222222222222222222 23334455555455321111 234556
Q ss_pred hhHHHHHHHH-----hCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 009681 115 VMGIPLLIAM-----YGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (529)
Q Consensus 115 fmGIPLl~aL-----yGeegl~lav~ivVlq~II~~TLgV~LlE~ 154 (529)
.+.+=+.... ..+++...++.+.++...+.-++...++..
T Consensus 379 l~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p 423 (769)
T KOG1650|consen 379 LVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDP 423 (769)
T ss_pred HHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcch
Confidence 6666555554 466677777777777777776666666543
No 30
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=30.10 E-value=8.2e+02 Score=28.17 Aligned_cols=39 Identities=3% Similarity=0.034 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcC
Q 009681 23 LAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN 62 (529)
Q Consensus 23 LGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~ 62 (529)
+|+++.++.+-. .+....+.+++++..+...+|-.++..
T Consensus 374 ~~~~l~~~~~k~-~~~~~~~~~il~~~gi~sii~G~lyG~ 412 (646)
T PRK05771 374 IGLLLSFKLKKK-SEGLKRLLKILIYLGISTIIWGLLTGS 412 (646)
T ss_pred HHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466665521122 345778899999999999999888764
No 31
>PRK05326 potassium/proton antiporter; Reviewed
Probab=29.29 E-value=3.4e+02 Score=30.55 Aligned_cols=50 Identities=8% Similarity=-0.130 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 17 LYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 17 LFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
++.+.+.|..+.. .+.............+.+++.|.+.+..=...++..+
T Consensus 247 ~la~~iaGl~l~n-~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l 296 (562)
T PRK05326 247 FLAVYLAGLVLGN-RPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRL 296 (562)
T ss_pred HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344566777766 2444444555666666677777644433234455443
No 32
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=28.16 E-value=4.3e+02 Score=26.07 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred EeecchhhhHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 009681 108 STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (529)
Q Consensus 108 ssf~NtgfmGIPLl~aLyGeegl~lav~ivVlq~II~~TLgV~LlE~ 154 (529)
+.|+-+-+=| |++..++|.+....+.+.+++--++...+.-++.++
T Consensus 92 sG~GwYSlsg-~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 92 SGFGWYSLSG-VLITQLYGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred ccCcHHHhHH-HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555544 457777899888888888888877776666666663
No 33
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=27.48 E-value=3.1e+02 Score=29.60 Aligned_cols=52 Identities=8% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcCcc-h--HHHHHHHHHHHHHHHHH-HHHHHHHhcCC
Q 009681 45 FVAIFAVPLLSFHFISTNDPYAM-N--FRFIAADTLQKIIMLFV-LGIWTNFTKNG 96 (529)
Q Consensus 45 fVf~VALPaLLF~sIs~~d~s~l-n--~~fIla~~L~~lIvflv-l~L~~r~~k~~ 96 (529)
.+-.+++=.++..++.+.++..+ + ..+++..+++.+++.+. .++..|+.+++
T Consensus 279 ~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkd 334 (368)
T PF03616_consen 279 RISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKD 334 (368)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Confidence 34555666667777877777665 2 22333334444443332 34445556544
No 34
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.79 E-value=1.7e+02 Score=30.41 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhcCCcCcc
Q 009681 45 FVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 45 fVf~VALPaLLF~sIs~~d~s~l 67 (529)
++.-+++|.-++.+++..++..|
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~m 291 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGI 291 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCC
Confidence 44457789999999999887654
No 35
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=25.10 E-value=55 Score=32.33 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 39 CSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 39 ~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
.+.|+-+.+ +++|+-++.+++..++..+
T Consensus 234 m~~LT~~t~-iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 234 MKVLTIVTA-IFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp HHHHHHHHH-HHHHHHHHTTSTTS-SS--
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhCCccCC
Confidence 334444444 4599999999998887744
No 36
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=25.08 E-value=4.8e+02 Score=24.55 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcch--HHHHHHHHHHHHHHHHHHHHHHHH
Q 009681 15 VPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMN--FRFIAADTLQKIIMLFVLGIWTNF 92 (529)
Q Consensus 15 LPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~ln--~~fIla~~L~~lIvflvl~L~~r~ 92 (529)
+-++++|.+.-.+.| +++++++...++.-.-. .=+|..+=-+-.++-...++ +.-+++-....+++|++.-+..|+
T Consensus 38 iAMlLLi~~~~~l~k-~G~l~~~te~Gi~FW~a-MYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~r~ 115 (125)
T TIGR00807 38 IAMILLIISKELLAK-RGHLPQVTQFGVGFWSA-MYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWISKS 115 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChhHHhHHHHHHc-cHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999 69999998888875543 23577666555555555552 222333344444455443333444
Q ss_pred hc
Q 009681 93 TK 94 (529)
Q Consensus 93 ~k 94 (529)
.+
T Consensus 116 g~ 117 (125)
T TIGR00807 116 SY 117 (125)
T ss_pred CC
Confidence 43
No 37
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=24.43 E-value=3.6e+02 Score=30.86 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcCcc--hHHHHHH
Q 009681 43 NRFVAIFAVPLLSFHFISTNDPYAM--NFRFIAA 74 (529)
Q Consensus 43 NrfVf~VALPaLLF~sIs~~d~s~l--n~~fIla 74 (529)
..+.+.+++|.++|..=++.+...+ ++.-++.
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~ 98 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILI 98 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677779999999999999988766 5544443
No 38
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=24.29 E-value=2.4e+02 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 16 PLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
-+++++.+||+.+|- -+.....+.+--.+.++..-+..+..-.-....++
T Consensus 286 ~LlLIVSlGYGIVkP--~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~ 335 (518)
T KOG2568|consen 286 LLLLIVSLGYGIVKP--TLGGTLLRVCQIGVIYFIASEILGLARVIGNISEL 335 (518)
T ss_pred HHHHHHhcCcceEec--CcchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccc
Confidence 467788899999883 35555555555566666666655554433333333
No 39
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=23.77 E-value=6.4e+02 Score=28.83 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhH----------------hHHHHHHHHHHHHHHHHHHhhcCCcC---cc---hH
Q 009681 12 TAVVPLYVAMILAYGSVRWWKIFSPDQC----------------SGINRFVAIFAVPLLSFHFISTNDPY---AM---NF 69 (529)
Q Consensus 12 saILPLFlIIaLGYll~R~~kIft~e~~----------------sgLNrfVf~VALPaLLF~sIs~~d~s---~l---n~ 69 (529)
+.++-+|+++++||+++|. |+-.=..- -.+...+-.+.+=+.+|.-=++.-+. .+ -+
T Consensus 10 ~p~l~lfl~i~lG~~lG~i-ki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~ 88 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKI-KFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGL 88 (562)
T ss_pred CHHHHHHHHHHHhHhhcce-EEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHHHHHHHhccH
Confidence 4688999999999999994 66331111 01233333444433333322233222 11 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhheeEEeecchhhhHHHH
Q 009681 70 RFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120 (529)
Q Consensus 70 ~fIla~~L~~lIvflvl~L~~r~~k~~~ld~~itlfsLssf~NtgfmGIPL 120 (529)
++.+..++..++.+++.++..++++.+. .....+++ ....|+.-+|-..
T Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~g~~~-~~~~Gl~a-GalT~tp~l~aA~ 137 (562)
T TIGR03802 89 REIILALVFAVSGLITVYALAKIFGLDK-GTAAGLAA-GGLTQSAVIGTAG 137 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHh-chhhccHHHHHHH
Confidence 3333333333333333344455565432 22245553 4668999998874
No 40
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=23.45 E-value=7.4e+02 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.000 Sum_probs=16.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 37 DQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 37 e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
+-...+.-|- -+.+|+..+..=.+.|+..+
T Consensus 261 ~le~~i~pf~-~lll~lFFi~vG~~id~~~l 290 (621)
T PRK03562 261 ALESDIEPFK-GLLLGLFFIAVGMSIDFGTL 290 (621)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhhccHHHH
Confidence 3344555553 56777665554456666544
No 41
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.58 E-value=5.7e+02 Score=29.25 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhh-cCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 17 LYVAMILAYGSVRW-WKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 17 LFlIIaLGYll~R~-~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
+...++.|.+++-. .+++++. ..+. .+..+++-+++|..=.+.++..+
T Consensus 32 ilg~ilaGillGP~~lg~i~~~--~~i~-~laelGvv~LLF~iGLel~~~~l 80 (601)
T PRK03659 32 VLGYLLAGIAIGPWGLGFISDV--DEIL-HFSELGVVFLMFIIGLELNPSKL 80 (601)
T ss_pred HHHHHHHHHHhccccccCCCcH--HHHH-HHHHHHHHHHHHHHHhcCCHHHH
Confidence 44445555555541 1344322 2233 56678888999987777777654
No 42
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=22.46 E-value=2.8e+02 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 009681 14 VVPLYVAMILAYGSVR 29 (529)
Q Consensus 14 ILPLFlIIaLGYll~R 29 (529)
++|.++++++-|+.-.
T Consensus 2 ~~P~~li~~~s~~~f~ 17 (237)
T PF02932_consen 2 IIPCILIVVLSWLSFW 17 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhheE
Confidence 5777777777666655
No 43
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.59 E-value=31 Score=36.66 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 009681 42 INRFVAIFAVPLLSFHFISTN 62 (529)
Q Consensus 42 LNrfVf~VALPaLLF~sIs~~ 62 (529)
+.-+++.+.+=+++...+.+.
T Consensus 80 LGlLCiilimi~lLv~~L~tL 100 (381)
T PF05297_consen 80 LGLLCIILIMIVLLVSMLWTL 100 (381)
T ss_dssp ---------------------
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433
No 44
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=20.83 E-value=6.2e+02 Score=23.83 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcchHH--HHHHHHHHHHHHHHHHHHHHH
Q 009681 15 VPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFR--FIAADTLQKIIMLFVLGIWTN 91 (529)
Q Consensus 15 LPLFlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~ln~~--fIla~~L~~lIvflvl~L~~r 91 (529)
+-++++|.+...+.| ++.++++..+++.-.-. .=+|..+=-+-.++-...++-. -+++-....+++|++.-+..|
T Consensus 38 iAMlLLI~~~~~l~k-~g~l~~~te~Gi~FW~a-mYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~lsr 114 (125)
T PF03817_consen 38 IAMLLLIFARLWLQK-KGLLSKPTEQGIEFWSA-MYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLSR 114 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChHHHhHHHHHHc-cHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 567888889999999 69999998888765443 3357776665556655555322 233333444444443333333
No 45
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=20.42 E-value=6.5e+02 Score=28.84 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc
Q 009681 19 VAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 19 lIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l 67 (529)
...+.|.++... . +..+....+..| .-+++|+..+..=.+.|+..+
T Consensus 242 GAFlaGl~l~~s-~-~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l 287 (601)
T PRK03659 242 GTFIAGVLLAES-E-YRHELEIAIEPF-KGLLLGLFFISVGMALNLGVL 287 (601)
T ss_pred HHHHHHHHhcCC-c-hHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHH
Confidence 334444444431 2 223334456665 367777766655456666544
Done!