Query 009681
Match_columns 529
No_of_seqs 243 out of 1273
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 93.1 0.8 2.7E-05 46.5 12.3 63 79-144 238-303 (332)
2 4ev6_A Magnesium transport pro 32.7 2.3E+02 0.0077 28.2 10.2 21 47-67 286-306 (339)
3 2iub_A CORA, divalent cation t 22.6 2.5E+02 0.0087 28.1 8.5 21 47-67 310-330 (363)
4 3zux_A Transporter, ASBTNM; tr 22.5 5.8E+02 0.02 25.4 12.9 70 5-83 10-86 (332)
5 3rhw_A Avermectin-sensitive gl 21.6 2.6E+02 0.0087 27.8 8.2 49 6-59 213-262 (347)
6 2gsm_B Cytochrome C oxidase su 20.0 1.3E+02 0.0045 29.5 5.6 25 6-30 34-58 (262)
7 3hb3_B Cytochrome C oxidase su 14.5 2.1E+02 0.0071 28.8 5.5 26 5-30 64-89 (298)
8 1waz_A MERF; protein structure 11.1 87 0.003 23.6 1.2 20 16-35 2-21 (46)
9 2lat_A Dolichyl-diphosphooligo 9.1 3.6E+02 0.012 19.3 3.7 14 1-14 1-14 (37)
10 2lkg_A Acetylcholine receptor; 9.1 9.5E+02 0.033 21.2 8.0 25 5-29 48-72 (140)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.05 E-value=0.8 Score=46.49 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhheeE-EeecchhhhHHHHHHHHhCCC--cchhHHHHHHHHHHHH
Q 009681 79 KIIMLFVLGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEY--SGSLMVQVVVLQCIIW 144 (529)
Q Consensus 79 ~lIvflvl~L~~r~~k~~~ld~~itlfsL-ssf~NtgfmGIPLl~aLyGee--gl~lav~ivVlq~II~ 144 (529)
.++.|++.+...++++.+..+. .+ .++ +..-|+ -+|++++...||+. .....+++.++|+++.
T Consensus 238 ~~~~~~lg~~~~r~~~~~~~~~-~t-i~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 238 NGIGYLLGFFAAKWTGLPYDAQ-KA-LTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHH-HH-HHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHhHh-hh-hhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 3344444444445555443332 22 222 444676 59999999999643 2334445555555443
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=32.70 E-value=2.3e+02 Score=28.16 Aligned_cols=21 Identities=5% Similarity=-0.225 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcCCcCcc
Q 009681 47 AIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 47 f~VALPaLLF~sIs~~d~s~l 67 (529)
.-+++|+-++.+++..++..|
T Consensus 286 t~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 286 TTIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHhhccCcCCCC
Confidence 346789999999999988644
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.62 E-value=2.5e+02 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.021 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhcCCcCcc
Q 009681 47 AIFAVPLLSFHFISTNDPYAM 67 (529)
Q Consensus 47 f~VALPaLLF~sIs~~d~s~l 67 (529)
.-+++|.-++.+++..++..|
T Consensus 310 t~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 310 ATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHhhhcccCCCC
Confidence 346788888889998887644
No 4
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=22.51 E-value=5.8e+02 Score=25.36 Aligned_cols=70 Identities=7% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCChhhHhHHHHHHHHHHHHHHHHHHhhcCCcCcc-----hHHHHHHHHH
Q 009681 5 KDLYLVLTAVVPL--YVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-----NFRFIAADTL 77 (529)
Q Consensus 5 ~dM~~VLsaILPL--FlIIaLGYll~R~~kIft~e~~sgLNrfVf~VALPaLLF~sIs~~d~s~l-----n~~fIla~~L 77 (529)
+.+...+...+++ ++.+++|++.-. ....++. ...+++.+++|..-.+.++.++ +++.++...+
T Consensus 10 ~~~~~~l~~~~~l~i~~~~~lg~~~P~--------~~~~~~~-~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~ 80 (332)
T 3zux_A 10 SKISSFIGKTFSLWAALFAAAAFFAPD--------TFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVI 80 (332)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCGG--------GTGGGGG-GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcch--------hhhhhHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHH
Confidence 3344555544443 334445554433 2223333 2346788888888778877764 4555544444
Q ss_pred HHHHHH
Q 009681 78 QKIIML 83 (529)
Q Consensus 78 ~~lIvf 83 (529)
..++++
T Consensus 81 ~~~vi~ 86 (332)
T 3zux_A 81 AQFAIM 86 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.61 E-value=2.6e+02 Score=27.76 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhH-hHHHHHHHHHHHHHHHHHHh
Q 009681 6 DLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQC-SGINRFVAIFAVPLLSFHFI 59 (529)
Q Consensus 6 dM~~VLsaILPLFlIIaLGYll~R~~kIft~e~~-sgLNrfVf~VALPaLLF~sI 59 (529)
-.+.+++.++|.++++++.++.-. ++++.. ..+ .|.+.+.|=..+|..+
T Consensus 213 ~~~y~~~l~iP~~li~~ls~~sF~----lp~~~~~~Rv-~lgit~lLt~tv~~~~ 262 (347)
T 3rhw_A 213 FSFYLLQLYIPSCMLVIVSWVSFW----FDRTAIPARV-TLGVTTLLTMTAQSAG 262 (347)
T ss_dssp SHHHHHHTHHHHHHHHHHHHTTTT----SCTTCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeehhHHHHHHHhheEEe----ccCCCCcceE-EEEeehHHHHHHHHHH
Confidence 457789999999999999887765 455432 222 2334444444444433
No 6
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=19.99 E-value=1.3e+02 Score=29.53 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 009681 6 DLYLVLTAVVPLYVAMILAYGSVRW 30 (529)
Q Consensus 6 dM~~VLsaILPLFlIIaLGYll~R~ 30 (529)
+..-++..++-++++.++.|.+.|+
T Consensus 34 ~~~~~i~~~I~v~V~~ll~~~~~r~ 58 (262)
T 2gsm_B 34 GFILVIIAAITIFVTLLILYAVWRF 58 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555666666553
No 7
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=14.49 E-value=2.1e+02 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009681 5 KDLYLVLTAVVPLYVAMILAYGSVRW 30 (529)
Q Consensus 5 ~dM~~VLsaILPLFlIIaLGYll~R~ 30 (529)
+|+.-++..++-+++..++-|.+.|+
T Consensus 64 h~~~~~i~~~I~v~V~~l~~~~~~r~ 89 (298)
T 3hb3_B 64 DHFVLYIITAVTIFVCLLLLICIVRF 89 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555556666553
No 8
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=11.07 E-value=87 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 009681 16 PLYVAMILAYGSVRWWKIFS 35 (529)
Q Consensus 16 PLFlIIaLGYll~R~~kIft 35 (529)
|+++++.-+.++..+.+++|
T Consensus 2 PvLViL~g~vGLsa~vgyLD 21 (46)
T 1waz_A 2 PVLVILLGVVGLSALTGYLD 21 (46)
T ss_dssp HHHHHHHHHHHHHHCCSCCC
T ss_pred ceeehhHHHhhHHHHHHHHH
Confidence 44444444444444345555
No 9
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=9.12 E-value=3.6e+02 Score=19.34 Aligned_cols=14 Identities=29% Similarity=0.238 Sum_probs=9.6
Q ss_pred CCchHHHHHHHHHH
Q 009681 1 MITWKDLYLVLTAV 14 (529)
Q Consensus 1 mi~~~dM~~VLsaI 14 (529)
|||-.+++.+.+.+
T Consensus 1 MIsD~qL~~lan~l 14 (37)
T 2lat_A 1 MITDVQLAIFANML 14 (37)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 88888877754433
No 10
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=9.09 E-value=9.5e+02 Score=21.18 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 009681 5 KDLYLVLTAVVPLYVAMILAYGSVR 29 (529)
Q Consensus 5 ~dM~~VLsaILPLFlIIaLGYll~R 29 (529)
+-.+-+++.++|.++++.+-++.-.
T Consensus 48 ~~~~y~~~liiP~~li~~Ls~~~F~ 72 (140)
T 2lkg_A 48 GPLYFVVNVIEPCKKFSELTGLVFY 72 (140)
T ss_dssp CTHHHHHHHHHHHHHHHTHHHHSSS
T ss_pred cceeeeehhhhHHHHHHHHHhheeE
Confidence 3456788899999998888877655
Done!