Query 009681
Match_columns 529
No_of_seqs 243 out of 1273
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 28.9 14 0.001 23.5 1.9 16 514-529 9-24 (30)
2 d1pv7a_ f.38.1.2 (A:) Lactose 13.8 3.3E+02 0.024 22.6 11.8 17 13-29 269-285 (417)
3 d2iuba2 f.17.3.1 (A:286-349) M 13.2 76 0.0056 22.5 3.5 22 45-66 11-32 (64)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.7 4E+02 0.029 22.9 14.6 22 9-30 291-312 (447)
5 d1oedc_ f.36.1.1 (C:) Acetylch 10.8 1.1E+02 0.0077 26.4 4.3 23 7-29 2-24 (260)
6 d1v54b2 f.17.2.1 (B:1-90) Mito 8.7 1.7E+02 0.012 22.1 4.3 7 49-55 66-72 (90)
7 d2e74f1 f.23.25.1 (F:1-32) Pet 8.0 1.9E+02 0.014 18.3 3.4 20 10-29 5-24 (32)
8 d1u00a2 b.130.1.1 (A:389-503) 7.6 1.7E+02 0.012 23.0 4.0 27 185-211 76-102 (115)
9 d1oede_ f.36.1.1 (E:) Acetylch 7.6 57 0.0042 28.4 1.0 22 8-29 3-24 (260)
10 d1iwga8 f.35.1.1 (A:513-566,A: 7.4 5E+02 0.037 21.8 7.5 22 42-63 27-48 (222)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.88 E-value=14 Score=23.46 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhhcC
Q 009681 514 TYSSLIGLVWSLIAFR 529 (529)
Q Consensus 514 ~y~~~~g~~w~~i~~r 529 (529)
.+||+|||.+--|.||
T Consensus 9 ifac~i~lfffaiffr 24 (30)
T d2axtt1 9 IFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4899999999999887
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.76 E-value=3.3e+02 Score=22.56 Aligned_cols=17 Identities=6% Similarity=0.000 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009681 13 AVVPLYVAMILAYGSVR 29 (529)
Q Consensus 13 aILPLFlIIaLGYll~R 29 (529)
.+.-++.....|++..|
T Consensus 269 ~~~~~~~~~~~~~l~~r 285 (417)
T d1pv7a_ 269 ELLNASIMFFAPLIINR 285 (417)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred ccccccchhhhhhhhcc
Confidence 33334444445555555
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.20 E-value=76 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcCc
Q 009681 45 FVAIFAVPLLSFHFISTNDPYA 66 (529)
Q Consensus 45 fVf~VALPaLLF~sIs~~d~s~ 66 (529)
.+--+.+|+-++.+++..+...
T Consensus 11 ~it~iflP~t~i~gifGMN~~~ 32 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFEY 32 (64)
T ss_dssp HHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHhhhccCCCC
Confidence 3445788888888888877653
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.69 E-value=4e+02 Score=22.90 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 009681 9 LVLTAVVPLYVAMILAYGSVRW 30 (529)
Q Consensus 9 ~VLsaILPLFlIIaLGYll~R~ 30 (529)
..+..+.-++..+..|++..|+
T Consensus 291 ~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 291 YFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcchhhhhhhhhhhhhhhhhc
Confidence 3444555566677778888774
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.81 E-value=1.1e+02 Score=26.37 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 009681 7 LYLVLTAVVPLYVAMILAYGSVR 29 (529)
Q Consensus 7 M~~VLsaILPLFlIIaLGYll~R 29 (529)
+|.+++.++|.+++.++-++.-.
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~ 24 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFY 24 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHee
Confidence 46678888888888877766654
No 6
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.68 E-value=1.7e+02 Score=22.10 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 009681 49 FAVPLLS 55 (529)
Q Consensus 49 VALPaLL 55 (529)
-.+|+++
T Consensus 66 TiiP~lI 72 (90)
T d1v54b2 66 TILPAII 72 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 7
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.97 E-value=1.9e+02 Score=18.28 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 009681 10 VLTAVVPLYVAMILAYGSVR 29 (529)
Q Consensus 10 VLsaILPLFlIIaLGYll~R 29 (529)
++++-+--|-+|.+||.++.
T Consensus 5 il~aa~lsfglifvgwglga 24 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHH
Confidence 45666666778888887765
No 8
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=7.62 E-value=1.7e+02 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.9
Q ss_pred cCCCccccccccCCCCceEEEEEecCC
Q 009681 185 DGRDFLETDAEIGDDGKLHVTVRKSNA 211 (529)
Q Consensus 185 ~G~~p~~~~~ev~~~g~~~v~vr~s~~ 211 (529)
.|..+++..-+++.+|.|+|+++--.+
T Consensus 76 ~G~~~I~Vtf~id~nGiL~V~A~d~~t 102 (115)
T d1u00a2 76 AGGAHIRVTFQVDADGLLSVTAMEKST 102 (115)
T ss_dssp TTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred cccccEEEEEEccCCceEEEEEEECCC
Confidence 455578888999999999999986544
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.57 E-value=57 Score=28.41 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 009681 8 YLVLTAVVPLYVAMILAYGSVR 29 (529)
Q Consensus 8 ~~VLsaILPLFlIIaLGYll~R 29 (529)
|-+++.++|.+++.++-++.-.
T Consensus 3 yY~~~lilP~~li~~ls~~~F~ 24 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYF 24 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheE
Confidence 4567777887777777666555
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.35 E-value=5e+02 Score=21.82 Aligned_cols=22 Identities=5% Similarity=-0.155 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 009681 42 INRFVAIFAVPLLSFHFISTND 63 (529)
Q Consensus 42 LNrfVf~VALPaLLF~sIs~~d 63 (529)
...++.|..+|.-+-....+.+
T Consensus 27 ~r~~~~y~~l~~g~~~~f~~lp 48 (222)
T d1iwga8 27 GRYLVLYLIIVVGMAYLFVRLP 48 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhheeeeccCc
Confidence 3456778888887776665543
Done!