BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009682
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 208/317 (65%), Gaps = 10/317 (3%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 275
I AN +VAQDGTG+Y+T++EA++AA S R+VIYVK G YKE + +NK + ++GD
Sbjct: 1 IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60
Query: 276 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 335
G Y T ITG N G++ +AT G GFI +DI NTAGP +QA+AL V +D +
Sbjct: 61 GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120
Query: 336 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSY--N 393
V RC I YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P G Y N
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKP-GKYQQN 179
Query: 394 AITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQXXXXXX 453
+TA GRTDP Q TG S+Q C I A SD PV ++ +YLGRPWK+YSR VVM+
Sbjct: 180 MVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL 239
Query: 454 XXXXGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFI 512
GW EW G TLY+ E+ N GPGA TS RVKWPG+HVI P A+ FTVA I
Sbjct: 240 INPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298
Query: 513 AGTSWLPSTGVIFDGGL 529
G SWL STGV + GL
Sbjct: 299 QGGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/317 (49%), Positives = 199/317 (62%), Gaps = 10/317 (3%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGD 275
+ NV+VA DG+G+Y+TVSEA++AA S R+VI +KAGVY+E + K I +GD
Sbjct: 5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64
Query: 276 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 335
G+ +TIIT N + G++ +AT G GF+ARDI F NTAG QA+AL V SD +
Sbjct: 65 GRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124
Query: 336 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNA 394
FYRC I YQD+LY + RQF+ + I GT+DFIFGNAA V Q+C + RRP G N
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNM 184
Query: 395 ITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQXXXXXXX 454
+TA GRTDP QNTG +Q +I A SD PV+ + +YLGRPWK+YSR VVMQ
Sbjct: 185 VTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVI 244
Query: 455 XXXGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVK-FTVANFI 512
GW W G +A +TLY+ EY N G GAATS RV W GF VI + FT +FI
Sbjct: 245 NPAGWFPWD--GNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFI 302
Query: 513 AGTSWLPSTGVIFDGGL 529
AG SWL +T F GL
Sbjct: 303 AGGSWLKATTFPFSLGL 319
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 139/320 (43%), Gaps = 56/320 (17%)
Query: 218 APRINANVIVAQDGTGNYRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGD 275
A NA V + ++T+++AI++A FVI +K GVY E++ ++ + L G+
Sbjct: 1 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 276 GKYTTIITG--------DDNARRGTSMPATATFTITGDGFIARDIGFHN----------- 316
+ +I D ++ GT+ ++T TI+ F A+ + N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTA--GSSTITISAKDFSAQSLTIRNDFDFPANQAKS 118
Query: 317 ---TAGPQGEQALALNV--ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIF 371
++ + QA+AL V + D F S+ GYQDTLY R F+ D I GT+DFIF
Sbjct: 119 DSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIF 178
Query: 372 GNAAAVFQNCYLVLRR----PKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKH 427
G+ A+F NC LV R G+ + T+ Q G + N ++ SD P K
Sbjct: 179 GDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK- 237
Query: 428 KYNSY-LGRPWK--------QYSRAVVMQXX----XXXXXXXXGWVEWPGAGGYANTLYF 474
SY LGRPW +Y+ + GW + G NT++F
Sbjct: 238 ---SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWF 294
Query: 475 A-------EYANVGPGAATS 487
EY + G GAA S
Sbjct: 295 NPEDSRFFEYKSYGAGAAVS 314
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 37/251 (14%)
Query: 218 APRINANVIVAQDGTGNYRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGD 275
A NA V + ++T+++AI++A FVI +K GVY E++ ++ + L G+
Sbjct: 1 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 276 GKYTTIITG--------DDNARRGTSMPATATFTITGDGFIARDIGFHN----------- 316
+ +I D ++ GT+ ++T TI+ F A+ + N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTA--GSSTITISAKDFSAQSLTIRNDFDFPANQAKS 118
Query: 317 ---TAGPQGEQALALNV--ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIF 371
++ + QA+AL V + D F S+ GYQDTLY R F+ D I GT+DFIF
Sbjct: 119 DSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIF 178
Query: 372 GNAAAVFQNCYLVLRR----PKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKH 427
G+ A+F NC LV R G+ + T+ Q G + N ++ SD P K
Sbjct: 179 GDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK- 237
Query: 428 KYNSY-LGRPW 437
SY LGRPW
Sbjct: 238 ---SYGLGRPW 245
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 37/251 (14%)
Query: 218 APRINANVIVAQDGTGNYRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGD 275
A NA V + ++T+++AI++A FVI +K GVY E++ ++ + L G+
Sbjct: 1 ATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGE 60
Query: 276 GKYTTIITG--------DDNARRGTSMPATATFTITGDGFIARDIGFHN----------- 316
+ +I D ++ GT+ ++T TI+ F A+ + N
Sbjct: 61 SRNGAVIAAATAAGTLKSDGSKWGTA--GSSTITISAKDFSAQSLTIRNDFDFPANQAKS 118
Query: 317 ---TAGPQGEQALALNV--ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIF 371
++ + QA+AL V + D F S+ GYQ TLY R F+ D I GT+DFIF
Sbjct: 119 DSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIF 178
Query: 372 GNAAAVFQNCYLVLRR----PKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKH 427
G+ A+F NC LV R G+ + T+ Q G + N ++ SD P K
Sbjct: 179 GDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK- 237
Query: 428 KYNSY-LGRPW 437
SY LGRPW
Sbjct: 238 ---SYGLGRPW 245
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 30/191 (15%)
Query: 224 NVIVAQDGTGN-YRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGDGKYTT 280
N +V+ G+ + +++ A+ +A + F+I++K GVY E++ + +TL G+ + T
Sbjct: 32 NAVVSTTPQGDEFSSINAALKSAPKDDTPFIIFLKNGVYTERLEVARSHVTLKGENRDGT 91
Query: 281 IITGDDNA--------RRGTSMPATATFTITGDGFIARDIGFHNT-----------AGP- 320
+I + A + GTS ++T + F A ++ N P
Sbjct: 92 VIGANTAAGMLNPQGEKWGTS--GSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPT 149
Query: 321 --QGEQALALNVA--SDHTVFYRCSIAGYQDTLYA-LALRQFYRDTDIYGTIDFIFGNAA 375
+ QA+AL +A SD F + GYQDTLY+ R ++ D +I G +DFIFG+
Sbjct: 150 KLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGI 209
Query: 376 AVFQNCYLVLR 386
VF NC +V R
Sbjct: 210 TVFDNCNIVAR 220
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAASGNRF--------VIYVKAGVYKEKIRTNKDGITL 272
I+A+ A +G YR VS+A S S N F +I V AG+ +EK++
Sbjct: 133 IDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ-------- 184
Query: 273 IGDGKYTTIITGDD---NARRGTSMPATATFTIT 303
+YT II D N G S ATA T+T
Sbjct: 185 ----QYTLIIQATDMEGNPTYGLSNTATAVITVT 214
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAASGNRF--------VIYVKAGVYKEKIRTNKDGITL 272
I+A+ A +G YR +S+A S S N F +I V AG+ +EK++
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ-------- 184
Query: 273 IGDGKYTTIITGDD---NARRGTSMPATATFTIT 303
+YT II D N G S ATA T+T
Sbjct: 185 ----QYTLIIQATDMEGNPTYGLSNTATAVITVT 214
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAASGNRF--------VIYVKAGVYKEKIRTNKDGITL 272
I+A+ A +G YR +S+A S S N F +I V AG+ +EK++
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ-------- 184
Query: 273 IGDGKYTTIITGDD---NARRGTSMPATATFTIT 303
+YT II D N G S ATA T+T
Sbjct: 185 ----QYTLIIQATDMEGNPTYGLSNTATAVITVT 214
>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
Met186ile
Length = 539
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 LVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKS 113
LV+ SI ++++P SN SQL A+ +D +E+M+ + R+ K+
Sbjct: 308 LVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMA-EVPRVRKA 352
>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
A59t
Length = 539
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 LVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKS 113
LV+ SI ++++P SN SQL A+ +D +E+M+ + R+ K+
Sbjct: 308 LVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMA-EVPRVRKA 352
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 LVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKS 113
LV+ SI ++++P SN SQL A+ +D +E+M+ + R+ K+
Sbjct: 308 LVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMA-EVPRVRKA 352
>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To 2- Ketobutyric Acid
Length = 473
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 LVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKS 113
LV+ SI ++++P SN SQL A+ +D +E+M+ + R+ K+
Sbjct: 296 LVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMA-EVPRVRKA 340
>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Pyruvic Acid
Length = 472
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 68 LVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKS 113
LV+ SI ++++P SN SQL A+ +D +E+M+ + R+ K+
Sbjct: 295 LVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMA-EVPRVRKA 339
>pdb|3FRW|A Chain A, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|B Chain B, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|C Chain C, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|D Chain D, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|E Chain E, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|F Chain F, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|G Chain G, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
pdb|3FRW|H Chain H, Crystal Structure Of Putative Trpr Protein From
Ruminococcus Obeum
Length = 107
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 123 KNKDDIQTWLGAALTFQQTCKDSVNSL-GLSERNEVIKKISQKMDYL--SQLTSNPLALV 179
KNK++ T+ F+ C ++N L LS+R EV K ++ K YL S+ T A +
Sbjct: 24 KNKEECYTF------FEDVC--TINELLSLSQRFEVAKXLTDKRTYLDISEKTGASTATI 75
Query: 180 NRIARASYPKNSTY 193
+R+ R+ N Y
Sbjct: 76 SRVNRSLNYGNDGY 89
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 162 SQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRI 221
+Q D L P AL + + + Y +R D G + LL A R+
Sbjct: 43 AQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALL-AKRM 101
Query: 222 NANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKA 256
+ I+A+ G GN+ S SA G + IY+ A
Sbjct: 102 GKSEIIAETGAGNHGVASALASALLGLKCRIYMGA 136
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 162 SQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRI 221
+Q D L P AL + + + Y +R D G + LL A R+
Sbjct: 43 AQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALL-AKRM 101
Query: 222 NANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKA 256
+ I+A+ G GN+ S SA G + IY+ A
Sbjct: 102 GKSEIIAEVGAGNHGVASALASALLGLKCRIYMGA 136
>pdb|2OCY|A Chain A, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
pdb|2OCY|B Chain B, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 154
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 86 FSSQLLAK-DFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKD 144
S+QL+ D Q H EE ++ SLK + A++N + K+D T L L+ + D
Sbjct: 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENY-NQLKEDYNT-LKRELSDRD---D 58
Query: 145 SVNSL--GLSERNEVIKKISQKMDYLSQLTSNPLALV-----NRIARASYPKNS--TYNR 195
V L +++ NE+ K ++ D L++ + A + N +A A K + N+
Sbjct: 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNXVADARKEKYAIEILNK 118
Query: 196 RLDEE 200
RL E+
Sbjct: 119 RLTEQ 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,837,634
Number of Sequences: 62578
Number of extensions: 647719
Number of successful extensions: 1433
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 20
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)