Query 009684
Match_columns 529
No_of_seqs 246 out of 527
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 72.7 2 6.8E-05 27.6 2.0 20 28-47 9-28 (28)
2 1kd8_A GABH AIV, GCN4 acid bas 70.5 5.9 0.0002 27.5 4.1 24 26-49 8-31 (36)
3 3he5_A Synzip1; heterodimeric 64.1 13 0.00045 26.6 5.0 20 35-54 5-24 (49)
4 3m48_A General control protein 63.6 7.3 0.00025 26.6 3.4 24 24-47 5-28 (33)
5 3ra3_A P1C; coiled coil domain 55.6 5.6 0.00019 25.5 1.6 23 34-56 1-23 (28)
6 1g6u_A Domain swapped dimer; d 54.8 16 0.00056 26.0 4.1 24 33-56 20-43 (48)
7 2wq1_A General control protein 54.5 18 0.00062 24.7 4.1 23 25-47 6-28 (33)
8 1uo4_A General control protein 54.2 13 0.00045 25.5 3.4 23 25-47 7-29 (34)
9 2xus_A Breast cancer metastasi 54.2 14 0.00048 27.6 3.9 22 41-62 14-35 (49)
10 1t2k_D Cyclic-AMP-dependent tr 51.5 26 0.00089 26.7 5.3 29 28-56 31-59 (61)
11 4dzn_A Coiled-coil peptide CC- 51.4 28 0.00097 23.0 4.5 25 31-55 7-31 (33)
12 3c3f_A Alpha/beta peptide with 48.2 19 0.00064 24.7 3.4 23 25-47 7-29 (34)
13 4dzn_A Coiled-coil peptide CC- 46.7 28 0.00096 23.1 4.0 23 34-56 3-25 (33)
14 1uii_A Geminin; human, DNA rep 45.9 27 0.00093 28.7 4.8 37 4-54 38-74 (83)
15 3viq_B Mating-type switching p 45.5 20 0.00067 29.7 3.9 28 29-56 4-31 (85)
16 1ci6_A Transcription factor AT 44.5 44 0.0015 25.7 5.6 27 27-53 31-57 (63)
17 1kd8_B GABH BLL, GCN4 acid bas 43.9 32 0.0011 23.9 4.1 25 25-49 7-31 (36)
18 1nkp_B MAX protein, MYC proto- 40.7 43 0.0015 26.8 5.3 30 27-56 48-77 (83)
19 1zme_C Proline utilization tra 39.8 25 0.00086 26.7 3.6 22 35-56 46-67 (70)
20 3c3g_A Alpha/beta peptide with 39.6 31 0.0011 23.5 3.4 22 26-47 7-28 (33)
21 2oxj_A Hybrid alpha/beta pepti 39.5 31 0.001 23.7 3.4 23 25-47 7-29 (34)
22 4dac_A Computationally designe 39.0 28 0.00094 22.3 2.9 22 29-50 4-25 (28)
23 2pnv_A Small conductance calci 38.0 28 0.00096 25.2 3.3 27 30-56 9-39 (43)
24 2r2v_A GCN4 leucine zipper; co 36.9 36 0.0012 23.4 3.4 23 25-47 7-29 (34)
25 2dgc_A Protein (GCN4); basic d 35.8 44 0.0015 25.8 4.4 31 27-57 31-61 (63)
26 2wvr_A Geminin; DNA replicatio 33.8 43 0.0015 31.9 4.8 39 4-56 107-145 (209)
27 1hjb_A Ccaat/enhancer binding 33.4 53 0.0018 27.2 4.7 30 27-56 44-73 (87)
28 3he4_A Synzip6; heterodimeric 33.2 37 0.0013 24.9 3.3 20 35-54 26-45 (56)
29 1wlq_A Geminin; coiled-coil; 2 32.3 49 0.0017 27.2 4.2 38 4-55 30-67 (83)
30 2e50_A Protein SET; histone ch 31.8 71 0.0024 30.7 6.1 42 22-63 22-74 (225)
31 2aze_B Transcription factor E2 31.1 58 0.002 27.7 4.8 35 23-57 3-37 (106)
32 1jnm_A Proto-oncogene C-JUN; B 30.9 34 0.0012 26.1 3.0 28 28-55 24-51 (62)
33 2wuj_A Septum site-determining 30.5 26 0.0009 26.5 2.2 19 35-53 36-54 (57)
34 1lq7_A Alpha3W; three helix bu 29.5 26 0.00089 26.5 2.0 18 34-51 49-66 (67)
35 2yy0_A C-MYC-binding protein; 29.0 1.1E+02 0.0038 22.8 5.4 35 22-56 15-49 (53)
36 2bni_A General control protein 28.9 58 0.002 22.4 3.4 23 25-47 7-29 (34)
37 2hy6_A General control protein 28.7 81 0.0028 21.6 4.1 24 24-47 6-29 (34)
38 3ph0_C ASCG; type III secretio 28.3 79 0.0027 24.3 4.5 13 26-38 3-15 (61)
39 1gu4_A CAAT/enhancer binding p 28.2 39 0.0013 27.4 3.0 26 28-53 45-70 (78)
40 3he5_A Synzip1; heterodimeric 28.0 79 0.0027 22.6 4.1 28 29-56 6-47 (49)
41 2wt7_B Transcription factor MA 28.0 1.7E+02 0.0058 24.3 6.9 38 32-69 47-84 (90)
42 2wt7_A Proto-oncogene protein 27.3 1.2E+02 0.0042 23.0 5.6 29 28-56 25-53 (63)
43 2l5g_B Putative uncharacterize 26.9 1.1E+02 0.0036 22.1 4.6 27 30-56 6-32 (42)
44 1ci6_A Transcription factor AT 26.4 1.1E+02 0.0039 23.3 5.3 30 27-56 24-53 (63)
45 1zme_C Proline utilization tra 24.9 62 0.0021 24.4 3.6 23 27-49 45-67 (70)
46 1t2k_D Cyclic-AMP-dependent tr 24.7 1.4E+02 0.0048 22.5 5.5 29 28-56 24-52 (61)
47 3swy_A Cyclic nucleotide-gated 23.5 1E+02 0.0035 22.6 4.1 28 37-69 2-29 (46)
48 1jnm_A Proto-oncogene C-JUN; B 23.4 1.2E+02 0.0042 22.9 5.0 27 28-54 31-57 (62)
49 2er8_A Regulatory protein Leu3 22.7 38 0.0013 25.9 1.9 21 33-53 49-69 (72)
50 1dh3_A Transcription factor CR 22.6 1.3E+02 0.0044 22.5 4.8 22 35-56 24-45 (55)
51 2jee_A YIIU; FTSZ, septum, coi 22.6 2.1E+02 0.0073 23.3 6.4 32 25-56 12-43 (81)
52 2wuj_A Septum site-determining 22.4 62 0.0021 24.4 3.0 20 29-48 37-56 (57)
53 2wt7_A Proto-oncogene protein 22.3 1.5E+02 0.0052 22.5 5.3 29 27-55 31-59 (63)
54 4g1a_A AQ-C16C19 peptide; heli 22.1 32 0.0011 22.6 1.1 22 35-56 2-23 (32)
55 4g2k_A General control protein 21.8 2.3E+02 0.008 24.8 6.8 44 23-66 18-61 (125)
56 4etp_A Kinesin-like protein KA 21.5 1.7E+02 0.0059 30.3 7.2 39 27-65 11-49 (403)
57 1kd8_A GABH AIV, GCN4 acid bas 21.2 1.5E+02 0.0051 20.6 4.3 28 29-56 4-31 (36)
58 2z5i_A TM, general control pro 20.8 81 0.0028 23.5 3.3 19 33-51 12-30 (52)
59 1a93_B MAX protein, coiled coi 20.6 1.3E+02 0.0043 20.8 3.8 29 24-52 5-33 (34)
60 3kyp_A Pfnaps, nucleosome asse 20.2 1.6E+02 0.0056 27.4 6.1 37 27-63 4-44 (193)
61 1dh3_A Transcription factor CR 20.0 1.2E+02 0.0041 22.7 4.1 29 27-55 23-51 (55)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=72.72 E-value=2 Score=27.57 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~ 47 (529)
--.|-.|||.||-||.-|||
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 34577899999999999986
No 2
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=70.49 E-value=5.9 Score=27.53 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 26 HEAQELLSNIALLETTVSKLEQEM 49 (529)
Q Consensus 26 ~~~~eLlaeiA~LE~eV~~LE~~v 49 (529)
.++.|||.+..-||.||.||.+-+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467788888888888888877644
No 3
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.15 E-value=13 Score=26.61 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLHF 54 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~~ 54 (529)
||.||.||+.||.+-.+|+.
T Consensus 5 vaqlenevaslenenetlkk 24 (49)
T 3he5_A 5 VAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHH
Confidence 34555555555555555443
No 4
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.59 E-value=7.3 Score=26.65 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 009684 24 FSHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 24 lP~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
|-.++.|||.|-.-||.||.||-.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345788999999999999999854
No 5
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.62 E-value=5.6 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009684 34 NIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 34 eiA~LE~eV~~LE~~v~~l~~~l 56 (529)
||..||-|---|||++-.|+|++
T Consensus 1 eidalefendaleqkiaalkqki 23 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHH
Confidence 45678888899999999999877
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=54.80 E-value=16 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 33 SNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 33 aeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
.|+|.||-|..-||+++-.|+.+|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999998776
No 7
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=54.48 E-value=18 Score=24.67 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.+..-||.||.+|-+
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788999999999999999854
No 8
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.23 E-value=13 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.+-.-||.||.||-+
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788999999999999999854
No 9
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=54.19 E-value=14 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 41 TVSKLEQEMVSLHFQLSQERNE 62 (529)
Q Consensus 41 eV~~LE~~v~~l~~~l~qe~~~ 62 (529)
+++.||+|-..|+-+||+||..
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999866
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.53 E-value=26 Score=26.67 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+.+|-.|-..|+.+|..|++++..|++.|
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555555555554433
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=51.38 E-value=28 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 31 LLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 31 LlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
|-.|||.|..||.-|.=++-.|+|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445555555555544444444443
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.24 E-value=19 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.+-.-||.||.+|-.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 35788999999999999999854
No 13
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.66 E-value=28 Score=23.06 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009684 34 NIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 34 eiA~LE~eV~~LE~~v~~l~~~l 56 (529)
|||.|..||.-|.+++-.|+..+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888765
No 14
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.93 E-value=27 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHF 54 (529)
Q Consensus 4 ~~aLerA~~~~~~~l~~~~~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~ 54 (529)
|.||+.||.- -..|-.+|..|++||..|.+....|+-
T Consensus 38 R~AL~eaL~E--------------N~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALKE--------------NEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666653 367888888888888888888887763
No 15
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=45.52 E-value=20 Score=29.72 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 29 ~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
..|-++|+.|++++..||+++..+.-+|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888888887544
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.47 E-value=44 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLH 53 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~ 53 (529)
++.+|=.+.+.|+.+|..|+.++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.94 E-value=32 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQEM 49 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~~v 49 (529)
-.++.|||.+-.-||.||.||-+-+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3578899999999999999886544
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.65 E-value=43 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+++.|-.++..|+.|+..|.++...|.++|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777666
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=39.84 E-value=25 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~~~l 56 (529)
|..||.+|..||++|..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776544
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.55 E-value=31 Score=23.53 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 26 HEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 26 ~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
.++.|||.+=.-||.||.+|-.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5788999999999999998854
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.52 E-value=31 Score=23.70 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.|=.-||.||.+|-.
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 35788999999999999998854
No 22
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=39.02 E-value=28 Score=22.32 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETTVSKLEQEMV 50 (529)
Q Consensus 29 ~eLlaeiA~LE~eV~~LE~~v~ 50 (529)
-.|=|++.-||.||-+||-+|-
T Consensus 4 ykldanvkrlekevgklegeva 25 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeccccHHHHHHHHhhhhhhhh
Confidence 3466777777777777776654
No 23
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.02 E-value=28 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 009684 30 ELLSNI----ALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 30 eLlaei----A~LE~eV~~LE~~v~~l~~~l 56 (529)
+|+.|+ ..||+-|..||.++.+|..+|
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 579999999999999999877
No 24
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.89 E-value=36 Score=23.41 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.+---||.||.+|-+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788999999999999998854
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.79 E-value=44 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~ 57 (529)
.+.+|=.+|+.|+.|-..|+.+|..|+..+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888888876653
No 26
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.83 E-value=43 Score=31.87 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 4 ~~aLerA~~~~~~~l~~~~~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
|.||+.||.- -.+|-.+|..|++||..|.+....|+--+
T Consensus 107 R~AL~eaLeE--------------N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 107 RKALYEALKE--------------NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777654 36788899999999999999998887433
No 27
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.39 E-value=53 Score=27.16 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
.+.+|-+|=+.|+.+|..|++++..|+.-|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666555444
No 28
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.20 E-value=37 Score=24.88 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLHF 54 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~~ 54 (529)
||-||..-.+||+.+-+|-.
T Consensus 26 varlendnanlekdianlek 45 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHH
Confidence 34444444444444444433
No 29
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.26 E-value=49 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 4 ~~aLerA~~~~~~~l~~~~~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
|.||+.||.-+ ..|-.+|..+++||..|.+....|+--
T Consensus 30 r~AL~eaL~EN--------------~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 30 RKALYEALKEN--------------EKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666533 568888899999999999888888743
No 30
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=31.83 E-value=71 Score=30.67 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 009684 22 SCFSHEAQELLSNIALLE-----------TTVSKLEQEMVSLHFQLSQERNER 63 (529)
Q Consensus 22 ~~lP~~~~eLlaeiA~LE-----------~eV~~LE~~v~~l~~~l~qe~~~~ 63 (529)
...|...++.|.++..+. +||..||++-..+|+-||++|.+.
T Consensus 22 ~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eI 74 (225)
T 2e50_A 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSEL 74 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 455666666666555443 456667777778888899998774
No 31
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.07 E-value=58 Score=27.74 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 23 CFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (529)
Q Consensus 23 ~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~ 57 (529)
.+..+...|=+||+-|+.+=..|.+++..++++|-
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999883
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.93 E-value=34 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
+.+|-.++..||.+-..|..+|..|+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 33
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.49 E-value=26 Score=26.51 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLH 53 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~ 53 (529)
++.|..|+..|++++..|.
T Consensus 36 ~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 34
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.53 E-value=26 Score=26.55 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009684 34 NIALLETTVSKLEQEMVS 51 (529)
Q Consensus 34 eiA~LE~eV~~LE~~v~~ 51 (529)
|+.-+|+||.+||+++..
T Consensus 49 evkkveeevkkleeeikk 66 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 456789999999998754
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.96 E-value=1.1e+02 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 22 SCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 22 ~~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
..-+..+-.|.+|++-|-.+|..|.+++-.|+.+|
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999877
No 36
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.94 E-value=58 Score=22.37 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
-.++.|||.+=.-||.||.||-+
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 35788999999999999998854
No 37
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.75 E-value=81 Score=21.63 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 009684 24 FSHEAQELLSNIALLETTVSKLEQ 47 (529)
Q Consensus 24 lP~~~~eLlaeiA~LE~eV~~LE~ 47 (529)
|-.++.|||.+=.-||.||.||-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345788999999999999998854
No 38
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.33 E-value=79 Score=24.33 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 009684 26 HEAQELLSNIALL 38 (529)
Q Consensus 26 ~~~~eLlaeiA~L 38 (529)
.+.+.||||||+.
T Consensus 3 ~~l~~lLAe~AL~ 15 (61)
T 3ph0_C 3 VQLKKQLAELALA 15 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678899999986
No 39
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.21 E-value=39 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLH 53 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~ 53 (529)
+.+|-+|=+.|+.+|..|++++..|+
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 40
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.01 E-value=79 Score=22.60 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETT--------------VSKLEQEMVSLHFQL 56 (529)
Q Consensus 29 ~eLlaeiA~LE~e--------------V~~LE~~v~~l~~~l 56 (529)
-.|=.|||.||.| |++||+++-+||.++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4577899999987 556666666666554
No 41
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.95 E-value=1.7e+02 Score=24.33 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 009684 32 LSNIALLETTVSKLEQEMVSLHFQLSQERNERRLAEYR 69 (529)
Q Consensus 32 laeiA~LE~eV~~LE~~v~~l~~~l~qe~~~~~~~~~~ 69 (529)
+.++..||.|+..|-.++..|++.+.+=..++.....+
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998776555554443333
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.31 E-value=1.2e+02 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+.+|-.++..||.+-..|..+|..|+..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666555443
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.91 E-value=1.1e+02 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 30 ELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 30 eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
|||.-|.-+--||.+-|+++..|+-++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888655
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.42 E-value=1.1e+02 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
.+.+|-.++..||.+...|+.+|..|...+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777778888888888777777654
No 45
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.93 E-value=62 Score=24.37 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEM 49 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v 49 (529)
.+.+|-.+|+.||.+|..|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998865
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.75 E-value=1.4e+02 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+.+|=.++..||.+-..|+.+|..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 47
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.47 E-value=1e+02 Score=22.58 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 009684 37 LLETTVSKLEQEMVSLHFQLSQERNERRLAEYR 69 (529)
Q Consensus 37 ~LE~eV~~LE~~v~~l~~~l~qe~~~~~~~~~~ 69 (529)
-|||-|.+||.-|..|+-++ .|.++||.
T Consensus 2 dlEekv~~Le~~ld~LqTr~-----ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF-----ARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 37999999999998888766 56666665
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.41 E-value=1.2e+02 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 28 AQELLSNIALLETTVSKLEQEMVSLHF 54 (529)
Q Consensus 28 ~~eLlaeiA~LE~eV~~LE~~v~~l~~ 54 (529)
+.+|=.|-+-|..+|..|++++..|++
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 49
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.71 E-value=38 Score=25.92 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009684 33 SNIALLETTVSKLEQEMVSLH 53 (529)
Q Consensus 33 aeiA~LE~eV~~LE~~v~~l~ 53 (529)
..|+.||.+|..||+.|..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667888888888888876553
No 50
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.62 E-value=1.3e+02 Score=22.51 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~~~l 56 (529)
|.-||.+|..||++-..|+.++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666555555544
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.61 E-value=2.1e+02 Score=23.29 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
=.+++.+|..|++|..||--|.++-..|-+..
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999888887766544
No 52
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.42 E-value=62 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETTVSKLEQE 48 (529)
Q Consensus 29 ~eLlaeiA~LE~eV~~LE~~ 48 (529)
.+|++|++-|++++.+||++
T Consensus 37 ~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555554
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.29 E-value=1.5e+02 Score=22.51 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
++..|=.+-+.|..+|..|++++..|..-
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443
No 54
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.10 E-value=32 Score=22.64 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009684 35 IALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 35 iA~LE~eV~~LE~~v~~l~~~l 56 (529)
||.||..|.-|||+--..-|++
T Consensus 2 iaaleqkiaaleqkcaaceqki 23 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKI 23 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777655544443
No 55
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=21.84 E-value=2.3e+02 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 009684 23 CFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRLA 66 (529)
Q Consensus 23 ~lP~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~qe~~~~~~~ 66 (529)
.|-.++.|+|.-|--+|.||++|.+-|-+|=-.|-+-.|.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~a 61 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKS 61 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999988887667765443
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.48 E-value=1.7e+02 Score=30.29 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRL 65 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~qe~~~~~~ 65 (529)
+..+|-.+++-||++|..+|+++..+..++.+|...|+.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777666543
No 57
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.16 E-value=1.5e+02 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 29 ~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
..|=+.|.-|..+...||.+|..|+--|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3566788889999999999999988544
No 58
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.75 E-value=81 Score=23.50 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009684 33 SNIALLETTVSKLEQEMVS 51 (529)
Q Consensus 33 aeiA~LE~eV~~LE~~v~~ 51 (529)
..|+.||.+|-+||.++..
T Consensus 12 RsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 59
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.55 E-value=1.3e+02 Score=20.78 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 24 FSHEAQELLSNIALLETTVSKLEQEMVSL 52 (529)
Q Consensus 24 lP~~~~eLlaeiA~LE~eV~~LE~~v~~l 52 (529)
+=.+..+.-++|.-|+..-..||+||-+|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 33566778888888888888888887654
No 60
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=20.23 E-value=1.6e+02 Score=27.35 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 009684 27 EAQELLSNIALLET----TVSKLEQEMVSLHFQLSQERNER 63 (529)
Q Consensus 27 ~~~eLlaeiA~LE~----eV~~LE~~v~~l~~~l~qe~~~~ 63 (529)
..++|=.|+..||+ |+..||++-..+|+-+|+.|.+.
T Consensus 4 ~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~i 44 (193)
T 3kyp_A 4 DFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEI 44 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 44566677777775 58899999999999999999874
No 61
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.01 E-value=1.2e+02 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
++.+|=.+|+.||.|-..|.+++..|...
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999988754
Done!