Query 009684
Match_columns 529
No_of_seqs 246 out of 527
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 10:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlwa_ a.38.1.1 (A:) Mad prot 24.7 55 0.004 23.9 5.3 28 29-56 50-77 (79)
2 d1wu9a1 a.245.1.1 (A:191-249) 23.7 56 0.0041 23.3 4.8 28 27-55 2-29 (59)
3 d2azeb1 e.63.1.2 (B:201-301) T 22.6 64 0.0046 25.3 5.5 31 27-57 2-32 (101)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 19.4 90 0.0066 23.1 5.6 25 32-56 51-75 (88)
5 d1seta1 a.2.7.1 (A:1-110) Sery 18.9 1.3E+02 0.0094 23.0 6.8 34 25-58 63-96 (110)
6 d1khba1 c.91.1.1 (A:260-622) C 18.8 9.9 0.00072 36.9 -0.5 45 443-487 233-288 (363)
7 d2bz1a1 c.144.1.1 (A:1-174) GT 16.1 61 0.0044 27.5 4.3 46 406-451 26-85 (174)
8 d1v74b_ a.24.20.1 (B:) Colicin 15.9 35 0.0025 26.3 2.2 18 179-196 37-54 (87)
9 d1hywa_ d.186.1.1 (A:) Head-to 15.5 30 0.0022 24.6 1.6 28 282-309 26-53 (58)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 13.8 87 0.0063 24.7 4.5 30 27-56 2-31 (133)
No 1
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.72 E-value=55 Score=23.91 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 29 ~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+.|-.+++.|+.++..|..+...|+++|
T Consensus 50 ~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 50 KKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555544
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=56 Score=23.34 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~ 55 (529)
++.+|-.||+-|...|..||++ -+||++
T Consensus 2 e~~~L~~ei~elk~~v~~lEkE-RdFYF~ 29 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKE-RDFYFG 29 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5678999999999999999998 677764
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.63 E-value=64 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~ 57 (529)
+.+.|=+||+-|+.+-..|.+++..+.++|.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~ 32 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLR 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999884
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.41 E-value=90 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 32 LSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 32 laeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+.-|-.|+.++..|++++..|+++.
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777666666544
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=18.93 E-value=1.3e+02 Score=23.01 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (529)
Q Consensus 25 P~~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l~q 58 (529)
+..+.+|++|+..|-.+|..||+++..+..++..
T Consensus 63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998877753
No 6
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.82 E-value=9.9 Score=36.93 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=28.3
Q ss_pred HHHHhccccccCCeEEechhhH--Hhhccc---------CCchHHHHHHHhhCCHH
Q 009684 443 DFIRASVGFSSKGKLLVPKMLH--CFCKGS---------VDDANLAVWISHYLPPL 487 (529)
Q Consensus 443 efl~a~v~v~~~~kv~LpKif~--wY~~DF---------~~~~~Ll~wI~~~Lp~~ 487 (529)
+|+++-..+..+..-.+||||+ ||++|= |++.-+|+||.+.+...
T Consensus 233 dY~~hWL~~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~ 288 (363)
T d1khba1 233 KYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGK 288 (363)
T ss_dssp HHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhhcccccCCCcEEEEEeeeecCCCCccCCCcchhhHHHHHHHHHhcCC
Confidence 5555544442221235999987 999872 23467999999876653
No 7
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=16.07 E-value=61 Score=27.48 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCCeEEEEeccCCCC--CCC-cceeccchH-----------HHHHHHHHHHHHHhcccc
Q 009684 406 EYEPLVAFALSCGMYS--SPA-ISIYTAKNV-----------REELQEAQRDFIRASVGF 451 (529)
Q Consensus 406 ~~ePrVhFAL~cGs~S--sP~-lrvYta~~v-----------~~qLe~a~~efl~a~v~v 451 (529)
..|..+||||+.|.++ .|+ |||-...-+ ..+|+.|.+..-....||
T Consensus 26 ~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~Gv 85 (174)
T d2bz1a1 26 LATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGI 85 (174)
T ss_dssp TTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEE
T ss_pred CCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCcE
Confidence 4578899999999764 444 587654433 347777777655555443
No 8
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=15.93 E-value=35 Score=26.30 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.9
Q ss_pred CCcccHHHHhHHHHHHHH
Q 009684 179 PNQLSEEMVRCMKNIFMS 196 (529)
Q Consensus 179 Pn~lSE~mvkC~~~Iy~~ 196 (529)
-++++.++-.|++.|||-
T Consensus 37 ~~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 37 VKDLSPNILNCGEELFMA 54 (87)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 457789999999999996
No 9
>d1hywa_ d.186.1.1 (A:) Head-to-tail joining protein W, gpW {Bacteriophage lambda [TaxId: 10710]}
Probab=15.49 E-value=30 Score=24.61 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=23.2
Q ss_pred eecCcchhhhhhhHHHHHHHHHHHHhcc
Q 009684 282 MSVGKQQLEYASGALKTFRTLVEQLAKV 309 (529)
Q Consensus 282 ~s~d~~~~~~a~~~l~~~~~lv~~L~~V 309 (529)
+..|+.++.|....+..++.++.+|+.+
T Consensus 26 vqKDGr~Veytaasi~eL~~yI~~lE~~ 53 (58)
T d1hywa_ 26 VQKDGRRVEFTATSVSDLKKYIAELEVQ 53 (58)
T ss_dssp EECSSCEEEECTTTHHHHHHHHHHHHHH
T ss_pred EecCCcEEEEeccCHHHHHHHHHHHHHH
Confidence 4578889999888888889999998764
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.79 E-value=87 Score=24.73 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009684 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (529)
Q Consensus 27 ~~~eLlaeiA~LE~eV~~LE~~v~~l~~~l 56 (529)
+..||.+.+.+|+.++-.|++++..|...+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~ 31 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATI 31 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999998776
Done!