Query 009686
Match_columns 528
No_of_seqs 322 out of 1225
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b4r_A Putative zinc metallopr 99.9 3.4E-24 1.2E-28 208.9 13.7 120 286-447 42-161 (224)
2 2di4_A Zinc protease, cell div 57.5 6.2 0.00021 38.7 3.2 28 294-321 18-47 (238)
3 3cqb_A Probable protease HTPX 53.5 5.8 0.0002 33.7 2.0 12 293-304 84-95 (107)
4 2jsd_A Matrix metalloproteinas 48.3 8.1 0.00028 34.5 2.2 22 293-314 109-130 (160)
5 2xs4_A Karilysin protease; hyd 47.3 8.5 0.00029 34.8 2.2 22 293-314 116-137 (167)
6 2ovx_A Matrix metalloproteinas 45.5 7.9 0.00027 35.0 1.7 22 293-314 112-133 (159)
7 1hy7_A Stromelysin-1, MMP-3; m 44.6 9.9 0.00034 34.7 2.2 22 293-314 114-135 (173)
8 1cge_A Fibroblast collagenase; 41.3 10 0.00034 34.5 1.7 21 293-313 112-132 (168)
9 1hv5_A Stromelysin 3; inhibiti 37.0 13 0.00044 33.6 1.7 22 293-314 114-135 (165)
10 1i76_A MMP-8;, neutrophil coll 36.5 16 0.00054 33.1 2.2 21 293-313 113-133 (163)
11 1slm_A Stromelysin-1; hydrolas 32.7 16 0.00055 35.8 1.7 21 293-313 196-216 (255)
12 3m92_A Protein YCIN; DUF2498, 31.8 55 0.0019 28.3 4.6 66 148-214 25-103 (107)
13 3c37_A Peptidase, M48 family; 30.9 20 0.00069 34.6 2.0 12 293-304 101-112 (253)
14 2y6d_A Matrilysin; hydrolase; 30.5 22 0.00077 32.5 2.2 22 293-314 116-137 (174)
15 2w15_A Zinc metalloproteinase 30.3 19 0.00065 33.4 1.7 18 292-309 136-153 (202)
16 1y93_A Macrophage metalloelast 30.3 19 0.00066 32.4 1.7 19 293-311 109-127 (159)
17 1rm8_A MMP-16, matrix metallop 29.7 24 0.00082 31.9 2.2 21 293-313 118-138 (169)
18 3ayu_A 72 kDa type IV collagen 29.6 20 0.00069 32.6 1.7 20 293-312 115-134 (167)
19 1c7k_A NCNP, zinc endoprotease 28.4 26 0.00091 31.4 2.2 11 294-304 79-89 (132)
20 2cki_A Ulilysin; metalloprotea 27.4 18 0.00061 35.7 1.0 11 294-304 164-174 (262)
21 1atl_A Atrolysin C; metalloend 26.7 25 0.00087 32.6 1.9 19 292-310 136-154 (202)
22 1bud_A Protein (acutolysin A); 26.6 24 0.00083 32.5 1.7 19 292-310 133-151 (197)
23 2ddf_A ADAM 17; hydrolase; HET 26.1 26 0.00089 33.6 1.9 18 292-309 182-199 (257)
24 1qua_A Acutolysin-C, hemorrhag 25.9 25 0.00086 32.4 1.7 17 292-308 135-151 (197)
25 1kuf_A Atrolysin E, metallopro 25.6 26 0.00088 32.6 1.7 18 292-309 138-155 (203)
26 1yp1_A FII; FII hydrolase; 1.9 25.4 26 0.00089 32.5 1.7 18 292-309 135-152 (202)
27 3b8z_A Protein adamts-5; alpha 24.8 27 0.00092 32.6 1.7 17 293-309 142-158 (217)
28 830c_A MMP-13, MMP-13; matrix 23.6 30 0.001 31.7 1.7 22 293-314 114-135 (168)
29 2v4b_A Adamts-1; zymogen, prot 23.4 29 0.001 34.1 1.7 19 292-310 143-161 (300)
30 2rjp_A Adamts-4; metalloprotea 22.2 32 0.0011 34.2 1.7 18 292-309 143-160 (316)
31 3ma2_D Matrix metalloproteinas 21.8 34 0.0012 31.8 1.7 20 294-313 124-143 (181)
32 2rjq_A Adamts-5; metalloprotea 21.7 33 0.0011 34.9 1.7 19 292-310 143-161 (378)
33 4dd8_A Disintegrin and metallo 21.3 42 0.0014 31.3 2.2 16 293-308 134-149 (208)
34 2ero_A VAP-1, vascular apoptos 21.1 40 0.0014 35.2 2.2 21 291-311 145-165 (427)
35 1sat_A Serratia protease; para 20.2 42 0.0014 35.6 2.2 20 294-313 172-191 (471)
No 1
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=3.4e-24 Score=208.89 Aligned_cols=120 Identities=30% Similarity=0.444 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccccCccceeeeEecchhhHHHHHHHHHHHH
Q 009686 286 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG 365 (528)
Q Consensus 286 p~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~~~R~alfdIAiAGPLAg~llAl~lllig 365 (528)
.++++++.++++||+||+++||++|+++.. +.+.+||+++++++. +|+++++|++|||++|++++++++++.
T Consensus 42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~ 113 (224)
T 3b4r_A 42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS 113 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999984 455558999988653 458899999999999999998876654
Q ss_pred hhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhhhh
Q 009686 366 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 445 (528)
Q Consensus 366 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGrIl~Allgr 445 (528)
...+.. . .. ...+.+.+|+|+++++|||+|++|||||||+++++++
T Consensus 114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~ 159 (224)
T 3b4r_A 114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK 159 (224)
T ss_dssp TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence 321100 0 00 1124467999999999999999999999999999877
Q ss_pred hH
Q 009686 446 KA 447 (528)
Q Consensus 446 r~ 447 (528)
+.
T Consensus 160 ~~ 161 (224)
T 3b4r_A 160 KY 161 (224)
T ss_dssp HH
T ss_pred cc
Confidence 63
No 2
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=57.53 E-value=6.2 Score=38.66 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHcC--Ccccccccccc
Q 009686 294 VIGVHELGHILAAKSTG--VELGVPYFVPS 321 (528)
Q Consensus 294 iL~iHElGH~laArr~G--vk~s~P~FIP~ 321 (528)
++..||.||+++|...+ .++..-..||.
T Consensus 18 ~vAyHEAGHAlva~~l~~~~pV~KVTIiPR 47 (238)
T 2di4_A 18 KIAIHEAGHALMGLVSDDDDKVHKISIIPR 47 (238)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCEECC--
T ss_pred HHHHHHHHHHHHHHHcCCCCceeEEEEeec
Confidence 46789999999999987 55554445564
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=53.55 E-value=5.8 Score=33.68 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q 009686 293 LVIGVHELGHIL 304 (528)
Q Consensus 293 ~iL~iHElGH~l 304 (528)
..++.||+||+.
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367899999974
No 4
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=48.34 E-value=8.1 Score=34.52 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+++||+||++=-.+-..+.+
T Consensus 109 ~~v~~HEiGHaLGL~H~~~~~s 130 (160)
T 2jsd_A 109 FTVAAHEFGHALGLAHSTDPSA 130 (160)
T ss_dssp HHHHHHHHHHHHTCCCCCCTTC
T ss_pred HHHHHHHhHhhhcCCCCCCCCc
Confidence 4678999999987765555443
No 5
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=47.29 E-value=8.5 Score=34.80 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+++||+||.+=-.+-..+.+
T Consensus 116 ~~v~~HEiGHaLGL~H~~~~~s 137 (167)
T 2xs4_A 116 ITVAAHEIGHLLGIEHSNVSSA 137 (167)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4678999999987655554443
No 6
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=45.48 E-value=7.9 Score=34.97 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+++||+||.+=-.+-..+.+
T Consensus 112 ~~va~HEiGHaLGL~Hs~~~~~ 133 (159)
T 2ovx_A 112 FLVAAHQFGHALGLDHSSVPEA 133 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhhhhhhhhhhcCCCCCCCcc
Confidence 3578999999986655544443
No 7
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=44.56 E-value=9.9 Score=34.69 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+++||+||++=-.+-..+-+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~s 135 (173)
T 1hy7_A 114 FLVAAHEIGHSLGLFHSANTEA 135 (173)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred hhhHHHHHHHhhcCCCCCCCCc
Confidence 4578999999987655554443
No 8
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=41.28 E-value=10 Score=34.54 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009686 293 LVIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~ 313 (528)
..+++||+||++=-.+-..+.
T Consensus 112 ~~v~~HEiGHaLGL~H~~~~~ 132 (168)
T 1cge_A 112 HRVAAHELGHSLGLSHSTDIG 132 (168)
T ss_dssp HHHHHHHHHHHTTCCCCSCTT
T ss_pred hhhhhhHhHhhhcCCCCCCCC
Confidence 467899999998665544443
No 9
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=36.96 E-value=13 Score=33.65 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+++||+||.+--.+-..+.+
T Consensus 114 ~~v~~HEiGHaLGL~H~~~~~s 135 (165)
T 1hv5_A 114 LQVAAHEFGHVLGLQHTTAAKA 135 (165)
T ss_dssp HHHHHHHHHHHTTCCCCSCTTS
T ss_pred hhhHHHHhHhhhCCCCCCCCCc
Confidence 4678999999986655444433
No 10
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=36.55 E-value=16 Score=33.11 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009686 293 LVIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~ 313 (528)
..+.+||+||.+--.+...+.
T Consensus 113 ~~v~~HE~GHalGl~H~~~~~ 133 (163)
T 1i76_A 113 FLVAAHEFGHSLGLAHSSDPG 133 (163)
T ss_dssp HHHHHHHHHHHHTBCCCSCTT
T ss_pred hhhhHHHhhhhhcCCCCCCCC
Confidence 457899999998765554443
No 11
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=32.66 E-value=16 Score=35.79 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009686 293 LVIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~ 313 (528)
..+++||+||++=-.+-..+-
T Consensus 196 ~~va~HEiGHaLGL~Hs~~~~ 216 (255)
T 1slm_A 196 FLVAAHEIGHSLGLFHSANTE 216 (255)
T ss_dssp HHHHHHHHHHHTTCCCCSCTT
T ss_pred hhhhHHHHHHHhcCCCCCCCC
Confidence 467899999998665444443
No 12
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=31.82 E-value=55 Score=28.35 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred cccCCCCHhHH-----HHhhccccccceeeeccccccCceEEEEeccC-------Ch-hHHHHHHHHHHHHhHhCCceEE
Q 009686 148 DEYIRIPKETI-----DILKDQVFGFDTFFVTNQEPYEGGVLFKGNLR-------GQ-AAKTYEKISTRMKNKFGDQYKL 214 (528)
Q Consensus 148 ~~~~~i~~edl-----~~ik~~~Fg~dtF~~t~~~~~~~gvi~rGnLR-------~~-~e~~y~~l~~~l~~~fGd~y~l 214 (528)
.+.-+|++++| +.||+.===+.--.+|++|-..+..+|||+.= +. ...||. +-+-|.-.+..+|.|
T Consensus 25 ~~~~~I~r~~LL~~AN~iI~eHeDyi~GM~A~~Veqk~~VLVFkGeyFLDe~GLPT~KTTAVFN-MFK~LAh~LS~ky~L 103 (107)
T 3m92_A 25 KETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLVFTGDYFLDEQGLPTAKSTAVFN-MFKHLAHVLSEKYHL 103 (107)
T ss_dssp CCCEEECHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCEEEEECCCCCTTSCCCHHHHHHHH-HHHHHHHHHTTTEEE
T ss_pred CCCCccCHHHHHHHHHHHHHHhHHHhccccccceeeeCCEEEEecceeecCCCCCCcccHHHHH-HHHHHHHHhChheec
Confidence 45678999998 45664322233467999999999999999932 22 234444 445566667778977
No 13
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=30.88 E-value=20 Score=34.61 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q 009686 293 LVIGVHELGHIL 304 (528)
Q Consensus 293 ~iL~iHElGH~l 304 (528)
..++.||+||..
T Consensus 101 aaVLaHElgH~~ 112 (253)
T 3c37_A 101 AGVLAHEINHAV 112 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999984
No 14
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=30.50 E-value=22 Score=32.52 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+.+||+||.+--.+...+.+
T Consensus 116 ~~~~~HE~gH~lGl~h~~~~~s 137 (174)
T 2y6d_A 116 LYAATHELGHSLGMGHSSDPNA 137 (174)
T ss_dssp HHHHHHHHHHHHTBCCCSCTTS
T ss_pred eehhhHHhHhhhcCCCCCCCCc
Confidence 3578999999987655444443
No 15
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=30.31 E-value=19 Score=33.37 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009686 292 ALVIGVHELGHILAAKST 309 (528)
Q Consensus 292 l~iL~iHElGH~laArr~ 309 (528)
.+..++||+||-+=+.+-
T Consensus 136 ~a~~~AHElGH~lG~~HD 153 (202)
T 2w15_A 136 VAVTMAHELGHNLGIHHD 153 (202)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhhhcCCccC
Confidence 457889999998766543
No 16
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=30.25 E-value=19 Score=32.43 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 009686 293 LVIGVHELGHILAAKSTGV 311 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gv 311 (528)
..+.+||+||.+--.+...
T Consensus 109 ~~~~~HE~GH~lGl~H~~~ 127 (159)
T 1y93_A 109 FLTAVHEIGHSLGLGHSSD 127 (159)
T ss_dssp HHHHHHHHHHHTTCCCCSC
T ss_pred hhhhhhhhhhhhcCCCCCC
Confidence 3568999999976554443
No 17
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=29.66 E-value=24 Score=31.91 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcc
Q 009686 293 LVIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~ 313 (528)
..+.+||+||.+--.+...+.
T Consensus 118 ~~~~~he~gh~lgl~h~~~~~ 138 (169)
T 1rm8_A 118 FLVAVHELGHALGLEHSNDPT 138 (169)
T ss_dssp HHHHHHHHHHHHTCCCCSCTT
T ss_pred eeehhhhhhhhcCCCCCCCCC
Confidence 357899999998766544443
No 18
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=29.57 E-value=20 Score=32.63 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHcCCc
Q 009686 293 LVIGVHELGHILAAKSTGVE 312 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk 312 (528)
..+++||+||.+--.+...+
T Consensus 115 ~~~~~HE~gH~lGl~H~~~~ 134 (167)
T 3ayu_A 115 FLVAAHAFGHAMGLEHSQDP 134 (167)
T ss_dssp HHHHHHHHHHHTTEECCSCT
T ss_pred eeehhhhhHHhccCCCCCCC
Confidence 35789999999865544443
No 19
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=28.37 E-value=26 Score=31.44 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 009686 294 VIGVHELGHIL 304 (528)
Q Consensus 294 iL~iHElGH~l 304 (528)
.+.+||+||.+
T Consensus 79 ~v~aHE~GH~L 89 (132)
T 1c7k_A 79 RVTAHETGHVL 89 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEeeeehhcc
Confidence 47899999986
No 20
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=27.42 E-value=18 Score=35.75 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q 009686 294 VIGVHELGHIL 304 (528)
Q Consensus 294 iL~iHElGH~l 304 (528)
-.++||+||++
T Consensus 164 ~TltHEvGH~L 174 (262)
T 2cki_A 164 RTATHEIGHWL 174 (262)
T ss_dssp HHHHHHHHHHT
T ss_pred chhhhhhhhhh
Confidence 56899999986
No 21
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=26.71 E-value=25 Score=32.56 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 009686 292 ALVIGVHELGHILAAKSTG 310 (528)
Q Consensus 292 l~iL~iHElGH~laArr~G 310 (528)
.+..++||+||-+=+.+-+
T Consensus 136 ~a~~~AHElGHnlG~~HD~ 154 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEHDG 154 (202)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred eEEEehhhhccccCceeCC
Confidence 3468899999987665533
No 22
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=26.59 E-value=24 Score=32.51 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 009686 292 ALVIGVHELGHILAAKSTG 310 (528)
Q Consensus 292 l~iL~iHElGH~laArr~G 310 (528)
++..++||+||-+=+.+-+
T Consensus 133 ~a~~~AHElGH~lG~~HD~ 151 (197)
T 1bud_A 133 VAITLAHEMAHNLGVSHDE 151 (197)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhhhcCCccCC
Confidence 3567899999997666533
No 23
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=26.10 E-value=26 Score=33.56 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009686 292 ALVIGVHELGHILAAKST 309 (528)
Q Consensus 292 l~iL~iHElGH~laArr~ 309 (528)
.+..++||+||-+=+.+=
T Consensus 182 ~a~~~AHElGHnlG~~HD 199 (257)
T 2ddf_A 182 ADLVTTHELGHNFGAEHD 199 (257)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred eeeeeeeehhhhcCcccC
Confidence 457789999998766543
No 24
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=25.91 E-value=25 Score=32.37 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009686 292 ALVIGVHELGHILAAKS 308 (528)
Q Consensus 292 l~iL~iHElGH~laArr 308 (528)
.+..++||+||-+=+.+
T Consensus 135 ~a~~~AHElGH~lG~~H 151 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNH 151 (197)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 45678999999876554
No 25
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=25.56 E-value=26 Score=32.58 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009686 292 ALVIGVHELGHILAAKST 309 (528)
Q Consensus 292 l~iL~iHElGH~laArr~ 309 (528)
.+..++||+||-+=+.+-
T Consensus 138 ~a~~~AHElGH~lG~~HD 155 (203)
T 1kuf_A 138 VAVTMTHELGHNLGMEHD 155 (203)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHhhhhcCCCCC
Confidence 457889999998765543
No 26
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=25.39 E-value=26 Score=32.46 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009686 292 ALVIGVHELGHILAAKST 309 (528)
Q Consensus 292 l~iL~iHElGH~laArr~ 309 (528)
++..++||+||-+=+.+-
T Consensus 135 ~a~~~AHElGH~lG~~HD 152 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLHD 152 (202)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 356789999999766543
No 27
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=24.84 E-value=27 Score=32.62 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHc
Q 009686 293 LVIGVHELGHILAAKST 309 (528)
Q Consensus 293 ~iL~iHElGH~laArr~ 309 (528)
+..++||+||-+=+.+-
T Consensus 142 a~~~AHElGHnlG~~HD 158 (217)
T 3b8z_A 142 AFTVAHEIGHLLGLSHD 158 (217)
T ss_dssp HHHHHHHHHHHTTCCCT
T ss_pred hhhhHhhhhhhcCCcCC
Confidence 46789999998766543
No 28
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=23.56 E-value=30 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHcCCccc
Q 009686 293 LVIGVHELGHILAAKSTGVELG 314 (528)
Q Consensus 293 ~iL~iHElGH~laArr~Gvk~s 314 (528)
..+.+||+||.+--.+-..+-+
T Consensus 114 ~~v~~hE~Gh~lGl~h~~~~~a 135 (168)
T 830c_A 114 FLVAAHEFGHSLGLDHSKDPGA 135 (168)
T ss_dssp HHHHHHHHHHHTTBCCCSCTTS
T ss_pred hhhhhhhhcchhcCCCCCCCcc
Confidence 4578999999987655544443
No 29
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=23.37 E-value=29 Score=34.09 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 009686 292 ALVIGVHELGHILAAKSTG 310 (528)
Q Consensus 292 l~iL~iHElGH~laArr~G 310 (528)
.+..++||+||-+=+.+-+
T Consensus 143 ~a~t~AHElGHnlG~~HD~ 161 (300)
T 2v4b_A 143 AAFTTAHELGHVFNMPHDD 161 (300)
T ss_dssp HHHHHHHHHHHHTTCCCTT
T ss_pred ceehhhhhhhhhcCCcCCC
Confidence 3578899999987665533
No 30
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=22.24 E-value=32 Score=34.15 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 009686 292 ALVIGVHELGHILAAKST 309 (528)
Q Consensus 292 l~iL~iHElGH~laArr~ 309 (528)
.+.+++||+||-+=+.+-
T Consensus 143 ~a~t~AHElGHnlGm~HD 160 (316)
T 2rjp_A 143 SAFTAAHQLGHVFNMLHD 160 (316)
T ss_dssp HHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHhhcCccCC
Confidence 457889999998866543
No 31
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=21.82 E-value=34 Score=31.83 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 009686 294 VIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 294 iL~iHElGH~laArr~Gvk~ 313 (528)
.+.+||+||.+--.+-..+-
T Consensus 124 ~v~~hE~Gh~lGl~hs~~~~ 143 (181)
T 3ma2_D 124 LVAVHELGHALGLEHSSDPS 143 (181)
T ss_dssp HHHHHHHHHHTTCCCCSCTT
T ss_pred eeehhhccccccCCcCCCCc
Confidence 57899999996554444443
No 32
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=21.67 E-value=33 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 009686 292 ALVIGVHELGHILAAKSTG 310 (528)
Q Consensus 292 l~iL~iHElGH~laArr~G 310 (528)
++.+++||+||-+=+.+-+
T Consensus 143 ~a~~~AHElGHnlGm~HD~ 161 (378)
T 2rjq_A 143 AAFTVAHEIGHLLGLSHDD 161 (378)
T ss_dssp HHHHHHHHHHHHTTCCCTT
T ss_pred hhhhhhhhhhhhcCccCCC
Confidence 4578999999998765533
No 33
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=21.28 E-value=42 Score=31.27 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 009686 293 LVIGVHELGHILAAKS 308 (528)
Q Consensus 293 ~iL~iHElGH~laArr 308 (528)
+..++||+||-+-+.+
T Consensus 134 a~~~AHElGH~lG~~H 149 (208)
T 4dd8_A 134 ACTMAHEMGHNLGMDH 149 (208)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCcC
Confidence 4679999999876544
No 34
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=21.11 E-value=40 Score=35.25 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCC
Q 009686 291 TALVIGVHELGHILAAKSTGV 311 (528)
Q Consensus 291 Ll~iL~iHElGH~laArr~Gv 311 (528)
.++.+++||+||-+=+.+-+.
T Consensus 145 ~~a~t~AHElGHnlG~~HD~~ 165 (427)
T 2ero_A 145 LVAIAMAHEMGHNLGMDHDKD 165 (427)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHHhcCCccCCC
Confidence 345789999999887765443
No 35
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=20.17 E-value=42 Score=35.61 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHcCCcc
Q 009686 294 VIGVHELGHILAAKSTGVEL 313 (528)
Q Consensus 294 iL~iHElGH~laArr~Gvk~ 313 (528)
.+++||+||++=-++-+.+-
T Consensus 172 ~va~HEiGHaLGL~Hs~~~~ 191 (471)
T 1sat_A 172 QTFTHEIGHALGLSHPGDYN 191 (471)
T ss_dssp HHHHHHHHHHHTCCCSSCCC
T ss_pred eeeeeeccccccCCCCCCcc
Confidence 56899999999777666554
Done!