Query 009689
Match_columns 528
No_of_seqs 317 out of 2119
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 4E-135 9E-140 1085.8 48.7 526 1-526 1-536 (536)
2 PLN02518 pheophorbide a oxygen 100.0 2.1E-47 4.5E-52 415.9 28.7 300 211-518 84-432 (539)
3 PLN00095 chlorophyllide a oxyg 100.0 7.6E-48 1.7E-52 398.2 23.6 263 213-483 68-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 3.3E-39 7.1E-44 338.8 22.3 309 177-519 4-359 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 5.3E-36 1.1E-40 320.2 18.0 172 177-367 15-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 3.4E-35 7.3E-40 313.9 19.9 173 177-367 15-218 (438)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 2.2E-28 4.8E-33 221.9 11.1 116 203-318 3-125 (129)
8 cd03537 Rieske_RO_Alpha_PrnD T 100.0 3.1E-28 6.8E-33 219.1 10.8 103 216-318 2-119 (123)
9 cd04338 Rieske_RO_Alpha_Tic55 99.9 6.8E-28 1.5E-32 220.0 11.1 114 205-318 5-130 (134)
10 cd03479 Rieske_RO_Alpha_PhDO_l 99.9 1.5E-27 3.2E-32 220.3 11.3 123 202-324 6-141 (144)
11 cd03545 Rieske_RO_Alpha_OHBDO_ 99.9 1.4E-27 3E-32 222.0 10.3 124 178-317 2-147 (150)
12 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 2.4E-26 5.3E-31 210.8 10.4 106 213-318 13-134 (138)
13 cd03531 Rieske_RO_Alpha_KSH Th 99.9 3.5E-26 7.7E-31 203.4 10.7 101 217-317 1-110 (115)
14 cd03532 Rieske_RO_Alpha_VanA_D 99.9 3.3E-26 7.1E-31 203.7 10.3 104 214-317 2-113 (116)
15 cd03539 Rieske_RO_Alpha_S5H Th 99.9 1.8E-25 3.9E-30 202.8 8.9 101 218-318 1-127 (129)
16 cd03538 Rieske_RO_Alpha_AntDO 99.9 2.9E-25 6.2E-30 205.6 10.3 120 182-318 4-144 (146)
17 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 4E-25 8.6E-30 202.2 11.0 103 213-316 10-126 (136)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 2.9E-25 6.2E-30 198.6 9.5 100 217-316 1-114 (118)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 4.3E-25 9.4E-30 200.1 9.0 106 213-318 4-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 3.7E-24 8E-29 189.8 9.0 100 218-317 1-115 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 4.1E-24 9E-29 192.3 9.4 102 216-317 1-120 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 7.7E-24 1.7E-28 190.6 9.4 100 218-317 1-118 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.5E-22 3.3E-27 182.3 9.5 101 218-318 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 5.2E-22 1.1E-26 170.6 9.4 89 218-311 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 8.5E-22 1.8E-26 169.7 9.2 90 218-312 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 2E-21 4.3E-26 170.4 10.6 95 218-317 1-103 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.8 9.2E-21 2E-25 164.8 9.6 92 217-312 1-100 (101)
28 cd03529 Rieske_NirD Assimilato 99.8 8.1E-21 1.8E-25 165.4 9.2 89 218-311 1-102 (103)
29 TIGR02378 nirD_assim_sml nitri 99.8 8.1E-21 1.8E-25 165.8 8.7 92 217-313 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.8 1.6E-20 3.6E-25 164.5 9.5 94 217-315 2-103 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.8 1.9E-20 4.1E-25 160.5 8.3 85 221-310 3-95 (95)
32 PF00355 Rieske: Rieske [2Fe-2 99.8 1.9E-19 4.2E-24 154.1 7.2 86 217-306 1-96 (97)
33 cd03467 Rieske Rieske domain; 99.8 2.6E-18 5.6E-23 147.7 9.1 89 218-310 1-98 (98)
34 PF13806 Rieske_2: Rieske-like 99.8 3.3E-18 7.1E-23 149.9 9.3 91 217-312 1-104 (104)
35 PRK09511 nirD nitrite reductas 99.7 7.7E-18 1.7E-22 148.4 9.3 91 217-312 3-107 (108)
36 COG2146 {NirD} Ferredoxin subu 99.7 1.1E-17 2.5E-22 146.9 9.4 94 216-313 3-105 (106)
37 cd08878 RHO_alpha_C_DMO-like C 99.7 5.1E-17 1.1E-21 153.0 14.0 171 338-515 5-195 (196)
38 cd03477 Rieske_YhfW_C YhfW fam 99.7 1.7E-17 3.7E-22 142.0 7.8 80 221-305 2-88 (91)
39 cd00680 RHO_alpha_C C-terminal 99.6 4.1E-15 8.9E-20 139.1 15.2 161 337-515 3-186 (188)
40 cd03471 Rieske_cytochrome_b6f 99.6 1.1E-15 2.3E-20 138.0 8.6 78 233-315 34-113 (126)
41 cd03476 Rieske_ArOX_small Smal 99.6 1.7E-15 3.6E-20 137.2 8.9 87 220-311 5-113 (126)
42 cd08885 RHO_alpha_C_1 C-termin 99.6 6E-14 1.3E-18 134.0 16.2 163 336-515 3-188 (190)
43 cd08883 RHO_alpha_C_CMO-like C 99.5 3.7E-13 8.1E-18 127.6 15.0 160 336-515 3-173 (175)
44 TIGR02694 arsenite_ox_S arseni 99.5 5.6E-14 1.2E-18 127.7 8.5 87 220-311 8-115 (129)
45 cd08887 RHO_alpha_C_3 C-termin 99.5 4.1E-13 8.9E-18 127.1 13.7 161 337-515 4-183 (185)
46 cd08884 RHO_alpha_C_GbcA-like 99.5 1.3E-12 2.9E-17 127.0 15.0 168 329-514 6-202 (205)
47 cd08886 RHO_alpha_C_2 C-termin 99.4 1E-12 2.2E-17 125.7 12.7 160 336-514 3-181 (182)
48 cd03473 Rieske_CMP_Neu5Ac_hydr 99.4 4.8E-13 1E-17 117.1 6.7 56 233-289 31-89 (107)
49 cd03470 Rieske_cytochrome_bc1 99.4 1.5E-12 3.2E-17 118.0 8.9 66 242-311 59-125 (126)
50 PRK13474 cytochrome b6-f compl 99.3 5.7E-12 1.2E-16 120.6 8.1 75 234-313 87-163 (178)
51 PF00848 Ring_hydroxyl_A: Ring 99.3 4.8E-12 1E-16 119.7 7.2 159 338-515 11-206 (209)
52 TIGR01416 Rieske_proteo ubiqui 98.9 2.1E-09 4.6E-14 102.6 8.4 62 242-307 105-168 (174)
53 PF08417 PaO: Pheophorbide a o 98.9 5.2E-09 1.1E-13 89.7 7.8 87 398-495 1-90 (92)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.8 5.7E-09 1.2E-13 98.9 6.7 66 242-311 74-158 (171)
55 cd08882 RHO_alpha_C_MupW-like 98.7 7.2E-08 1.6E-12 96.7 10.8 85 430-515 146-241 (243)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.7 9.4E-08 2E-12 94.6 11.4 31 338-368 5-37 (222)
57 cd08879 RHO_alpha_C_AntDO-like 98.4 7.4E-07 1.6E-11 89.0 9.3 31 337-367 4-34 (237)
58 cd08881 RHO_alpha_C_NDO-like C 98.3 1.4E-06 3.1E-11 85.4 8.1 132 336-490 8-156 (206)
59 COG0723 QcrA Rieske Fe-S prote 98.2 1.7E-06 3.6E-11 82.7 6.1 67 244-314 100-168 (177)
60 PF11723 Aromatic_hydrox: Homo 97.9 3.1E-05 6.8E-10 76.5 8.3 185 329-519 21-239 (240)
61 TIGR03171 soxL2 Rieske iron-su 97.9 2.7E-05 5.8E-10 80.2 6.9 68 241-312 174-276 (321)
62 KOG1671 Ubiquinol cytochrome c 97.0 0.00046 1E-08 66.5 3.4 56 235-290 136-191 (210)
63 KOG1336 Monodehydroascorbate/f 94.1 0.027 5.8E-07 61.3 2.1 38 254-291 1-39 (478)
64 PRK14127 cell division protein 88.0 1.5 3.3E-05 39.0 6.3 42 105-149 27-68 (109)
65 PRK00294 hscB co-chaperone Hsc 75.7 16 0.00035 35.1 8.6 92 69-163 52-162 (173)
66 PF05546 She9_MDM33: She9 / Md 75.2 8 0.00017 38.2 6.4 57 109-166 24-80 (207)
67 PRK14549 50S ribosomal protein 74.3 12 0.00025 30.6 6.2 48 118-165 12-64 (69)
68 PRK03578 hscB co-chaperone Hsc 73.5 21 0.00046 34.4 8.8 90 71-163 56-165 (176)
69 PRK00888 ftsB cell division pr 71.8 23 0.0005 31.2 8.0 50 119-168 28-77 (105)
70 cd00427 Ribosomal_L29_HIP Ribo 70.9 13 0.00028 29.1 5.5 47 118-164 6-56 (57)
71 PF13118 DUF3972: Protein of u 69.4 14 0.00031 33.7 6.2 49 96-144 69-118 (126)
72 TIGR02449 conserved hypothetic 64.6 35 0.00075 27.7 6.9 59 102-160 5-63 (65)
73 PRK09039 hypothetical protein; 63.6 31 0.00067 36.7 8.4 61 106-166 125-185 (343)
74 PF11559 ADIP: Afadin- and alp 61.0 55 0.0012 30.2 8.7 87 68-158 27-113 (151)
75 PF13334 DUF4094: Domain of un 59.9 6.8 0.00015 34.1 2.2 32 108-139 63-94 (95)
76 PF08537 NBP1: Fungal Nap bind 59.2 25 0.00055 36.9 6.6 50 119-168 176-225 (323)
77 PF10186 Atg14: UV radiation r 56.9 56 0.0012 33.0 8.8 43 116-158 54-96 (302)
78 PF06005 DUF904: Protein of un 53.6 77 0.0017 26.1 7.3 31 127-157 41-71 (72)
79 PRK00306 50S ribosomal protein 53.3 47 0.001 26.7 6.0 51 117-167 8-62 (66)
80 PRK11637 AmiB activator; Provi 53.0 54 0.0012 35.7 8.3 47 120-166 84-130 (428)
81 PF10392 COG5: Golgi transport 52.4 76 0.0016 28.8 7.9 26 69-94 26-51 (132)
82 PF07743 HSCB_C: HSCB C-termin 52.0 1E+02 0.0023 25.0 8.0 62 98-163 9-74 (78)
83 PF05278 PEARLI-4: Arabidopsis 50.7 81 0.0017 32.5 8.5 41 120-160 202-242 (269)
84 PRK00461 rpmC 50S ribosomal pr 50.2 57 0.0012 28.0 6.2 54 118-171 8-65 (87)
85 PRK14161 heat shock protein Gr 50.2 53 0.0011 31.8 6.8 52 98-155 12-63 (178)
86 PF09740 DUF2043: Uncharacteri 50.2 9 0.00019 34.2 1.4 62 215-281 33-100 (110)
87 PF00831 Ribosomal_L29: Riboso 49.9 48 0.001 26.0 5.4 47 118-164 7-57 (58)
88 PF10498 IFT57: Intra-flagella 49.1 75 0.0016 34.1 8.4 76 81-158 211-306 (359)
89 PRK06342 transcription elongat 46.7 34 0.00073 32.5 4.8 45 120-164 36-82 (160)
90 PF13863 DUF4200: Domain of un 46.5 98 0.0021 27.4 7.6 66 98-163 54-119 (126)
91 PF06148 COG2: COG (conserved 46.0 42 0.00091 30.4 5.2 51 112-162 63-113 (133)
92 COG1938 Archaeal enzymes of AT 44.9 45 0.00097 33.9 5.6 48 102-149 188-235 (244)
93 PF07820 TraC: TraC-like prote 44.5 42 0.00092 29.0 4.6 33 117-149 1-33 (92)
94 TIGR00012 L29 ribosomal protei 44.2 74 0.0016 24.6 5.6 46 118-163 5-54 (55)
95 PF11559 ADIP: Afadin- and alp 43.5 1.6E+02 0.0034 27.2 8.7 60 98-157 81-140 (151)
96 PRK01773 hscB co-chaperone Hsc 43.3 1.2E+02 0.0026 29.1 8.1 88 72-163 53-161 (173)
97 PRK04654 sec-independent trans 43.2 78 0.0017 31.5 6.8 52 99-151 36-87 (214)
98 PF05377 FlaC_arch: Flagella a 42.0 67 0.0015 25.3 4.9 45 108-163 4-48 (55)
99 PF13094 CENP-Q: CENP-Q, a CEN 42.0 1.4E+02 0.003 27.8 8.2 51 113-163 36-86 (160)
100 PF15155 MRFAP1: MORF4 family- 41.6 56 0.0012 29.1 4.9 50 103-162 11-64 (127)
101 PF03195 DUF260: Protein of un 41.2 29 0.00063 30.5 3.2 47 92-141 53-101 (101)
102 PRK09039 hypothetical protein; 40.8 1E+02 0.0022 32.8 7.9 42 120-161 146-195 (343)
103 PF04977 DivIC: Septum formati 40.0 86 0.0019 25.2 5.7 51 116-166 15-65 (80)
104 PRK14156 heat shock protein Gr 38.3 96 0.0021 30.0 6.5 51 103-154 20-70 (177)
105 PF08606 Prp19: Prp19/Pso4-lik 37.6 1.4E+02 0.003 24.7 6.3 29 121-150 25-53 (70)
106 PRK11637 AmiB activator; Provi 36.8 1.3E+02 0.0029 32.6 8.2 48 111-158 82-129 (428)
107 PRK10884 SH3 domain-containing 36.6 1E+02 0.0022 30.5 6.6 17 23-39 35-51 (206)
108 PF10458 Val_tRNA-synt_C: Valy 34.4 1.3E+02 0.0029 23.9 5.8 27 123-149 2-28 (66)
109 COG0497 RecN ATPase involved i 34.0 1.2E+02 0.0026 34.5 7.4 57 98-154 322-378 (557)
110 KOG0980 Actin-binding protein 33.5 1.5E+02 0.0033 35.3 8.1 64 69-140 445-516 (980)
111 PRK13723 conjugal transfer pil 32.8 1.6E+02 0.0035 32.6 8.0 44 124-167 390-440 (451)
112 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.5 2.3E+02 0.0051 25.6 7.9 49 101-149 42-90 (132)
113 PF12761 End3: Actin cytoskele 31.9 65 0.0014 31.7 4.3 23 122-144 100-122 (195)
114 PF07889 DUF1664: Protein of u 31.8 1.2E+02 0.0025 27.9 5.6 41 120-160 84-124 (126)
115 PF12777 MT: Microtubule-bindi 31.2 84 0.0018 33.3 5.4 38 120-157 244-281 (344)
116 CHL00154 rpl29 ribosomal prote 31.1 1.9E+02 0.0041 23.5 6.2 47 118-164 12-62 (67)
117 TIGR02209 ftsL_broad cell divi 30.7 1.8E+02 0.0039 23.8 6.3 50 118-168 24-73 (85)
118 PF12958 DUF3847: Protein of u 30.4 75 0.0016 27.2 3.9 33 119-151 2-34 (86)
119 COG1842 PspA Phage shock prote 29.9 2.5E+02 0.0054 28.2 8.2 66 101-166 14-79 (225)
120 KOG2629 Peroxisomal membrane a 29.8 3.5E+02 0.0077 28.3 9.3 6 23-28 29-34 (300)
121 TIGR00219 mreC rod shape-deter 29.4 1.4E+02 0.003 30.9 6.4 40 104-143 52-91 (283)
122 PF06698 DUF1192: Protein of u 29.1 1.4E+02 0.003 23.8 4.9 27 117-143 20-46 (59)
123 PF10186 Atg14: UV radiation r 28.7 3.1E+02 0.0067 27.5 8.9 44 99-142 65-108 (302)
124 smart00549 TAFH TAF homology. 28.0 97 0.0021 26.9 4.1 39 98-137 41-79 (92)
125 PRK05014 hscB co-chaperone Hsc 27.1 2.9E+02 0.0063 26.3 7.8 90 70-163 50-160 (171)
126 PRK09915 putative outer membra 26.6 1.2E+02 0.0027 33.2 5.9 47 103-149 180-226 (488)
127 PF04698 Rab_eff_C: Rab effect 26.2 92 0.002 36.2 4.8 50 110-160 573-622 (714)
128 TIGR02894 DNA_bind_RsfA transc 26.0 2.6E+02 0.0057 26.7 7.1 53 106-158 85-137 (161)
129 smart00787 Spc7 Spc7 kinetocho 26.0 2.6E+02 0.0055 29.5 7.8 15 75-89 150-164 (312)
130 PF07439 DUF1515: Protein of u 25.5 2.5E+02 0.0055 25.1 6.4 30 120-149 3-32 (112)
131 KOG1594 Uncharacterized enzyme 25.1 87 0.0019 32.4 3.9 58 17-74 60-118 (305)
132 PF11471 Sugarporin_N: Maltopo 24.8 1.5E+02 0.0032 23.7 4.4 32 120-151 27-58 (60)
133 PF13815 Dzip-like_N: Iguana/D 24.6 96 0.0021 27.7 3.8 40 119-158 74-113 (118)
134 PF07321 YscO: Type III secret 24.4 2.4E+02 0.0051 26.7 6.5 62 86-148 43-104 (152)
135 COG1842 PspA Phage shock prote 23.9 1.5E+02 0.0033 29.7 5.5 53 112-164 85-138 (225)
136 PRK01356 hscB co-chaperone Hsc 23.9 3.1E+02 0.0067 26.1 7.3 86 71-163 50-156 (166)
137 COG3879 Uncharacterized protei 23.8 1.7E+02 0.0036 29.9 5.7 28 122-149 54-81 (247)
138 KOG0994 Extracellular matrix g 23.8 2.5E+02 0.0054 34.8 7.7 73 99-171 1561-1641(1758)
139 PF06120 Phage_HK97_TLTM: Tail 23.4 3.7E+02 0.008 28.3 8.3 67 98-164 75-166 (301)
140 PF12718 Tropomyosin_1: Tropom 23.4 3.4E+02 0.0073 25.2 7.3 70 89-158 11-84 (143)
141 PRK10869 recombination and rep 23.2 1.9E+02 0.0042 32.7 6.7 61 106-166 322-383 (553)
142 PF07531 TAFH: NHR1 homology t 23.2 1.2E+02 0.0025 26.6 3.8 41 98-139 42-82 (96)
143 COG1422 Predicted membrane pro 23.0 1.1E+02 0.0023 30.4 3.9 32 108-139 62-93 (201)
144 KOG2010 Double stranded RNA bi 22.6 1.9E+02 0.0041 30.7 5.9 39 120-158 149-204 (405)
145 PRK14154 heat shock protein Gr 22.6 2E+02 0.0043 28.6 5.8 29 122-150 63-91 (208)
146 COG5570 Uncharacterized small 22.2 1.2E+02 0.0026 23.7 3.2 42 101-142 16-57 (57)
147 PF15290 Syntaphilin: Golgi-lo 22.0 4.5E+02 0.0097 27.5 8.3 84 29-149 36-125 (305)
148 smart00787 Spc7 Spc7 kinetocho 21.8 2.9E+02 0.0063 29.1 7.3 7 83-89 196-202 (312)
149 TIGR02977 phageshock_pspA phag 21.7 3.5E+02 0.0077 26.6 7.5 56 102-158 15-71 (219)
150 COG1645 Uncharacterized Zn-fin 21.6 65 0.0014 29.7 2.1 30 247-279 26-55 (131)
151 KOG2483 Upstream transcription 21.5 2E+02 0.0044 29.1 5.8 63 76-138 76-139 (232)
152 PF07889 DUF1664: Protein of u 21.5 3.2E+02 0.007 25.0 6.6 48 119-166 44-91 (126)
153 COG1579 Zn-ribbon protein, pos 21.5 4E+02 0.0086 27.1 7.8 39 120-158 98-136 (239)
154 PF09486 HrpB7: Bacterial type 21.3 2.1E+02 0.0046 27.2 5.5 42 119-160 23-64 (158)
155 COG0255 RpmC Ribosomal protein 21.3 3E+02 0.0066 22.6 5.7 49 118-166 11-63 (69)
156 PF05529 Bap31: B-cell recepto 21.2 74 0.0016 30.6 2.6 18 122-139 158-175 (192)
157 PF04012 PspA_IM30: PspA/IM30 21.1 2.1E+02 0.0047 27.9 5.9 87 108-196 88-174 (221)
158 COG3027 zapA Cell division pro 21.1 2.4E+02 0.0051 25.0 5.5 33 126-158 62-98 (105)
159 PF06148 COG2: COG (conserved 21.0 66 0.0014 29.1 2.0 54 100-153 40-97 (133)
160 COG1392 Phosphate transport re 20.8 4.5E+02 0.0099 26.1 8.1 63 93-155 79-146 (217)
161 PF06637 PV-1: PV-1 protein (P 20.7 2.7E+02 0.0058 30.2 6.6 79 110-198 348-427 (442)
162 PRK01919 tatB sec-independent 20.5 6.3E+02 0.014 24.4 8.5 8 196-203 121-128 (169)
163 KOG2129 Uncharacterized conser 20.4 4.3E+02 0.0092 29.2 8.1 36 122-157 289-329 (552)
164 PF10080 DUF2318: Predicted me 20.4 5.8E+02 0.013 22.5 7.7 65 233-313 19-92 (102)
165 PF00261 Tropomyosin: Tropomyo 20.1 3.6E+02 0.0079 26.9 7.3 60 101-160 117-176 (237)
166 PF05265 DUF723: Protein of un 20.1 54 0.0012 26.2 1.1 17 265-281 29-45 (60)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=4.3e-135 Score=1085.81 Aligned_cols=526 Identities=76% Similarity=1.298 Sum_probs=466.0
Q ss_pred Cc-chhhhhccccccccc--cccccccccccccceEEEEEecCCCccccccCcceeeeeecCCCCCCCccCCceechhhH
Q 009689 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (528)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (528)
|| +++|+|+||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 77 499999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
|||+||||||||||||||+||||.||+||||||||||||+|||||||||||||||||+|||+|||+||||||++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccccCCCCCccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCCe-----
Q 009689 158 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM----- 232 (528)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~~----- 232 (528)
||+|+|+|||++++.+++.-.++.+++++.....+.++..+++++.+|+..|+...++|.||+||+++||+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l 240 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC 240 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence 999999999998887766544444455557788889999999999999999999999999999999999987632
Q ss_pred --eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEE
Q 009689 233 --EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 310 (528)
Q Consensus 233 --~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~Iw 310 (528)
++++|||+.+|+++|+.|+|||||++|+.|+++++.|+||||||+||.+|+|+.+|+.+..+.++++|||++++|+||
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw 320 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW 320 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999998765678899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceeeeecCCCCCCcccc
Q 009689 311 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 390 (528)
Q Consensus 311 V~~~~~~p~~~lp~~~~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~~~~~~~~~~g~~~ 390 (528)
||+++.++++.+|.+..+.+|.......+++++||++++||++|+||++|+|+++++..+..+..+....+...+.++|.
T Consensus 321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~ 400 (536)
T PLN02281 321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400 (536)
T ss_pred EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccc
Confidence 99987655445666655456765555678999999999999999999999999999987666655554444444555665
Q ss_pred CCCcceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHH
Q 009689 391 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 470 (528)
Q Consensus 391 ~~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~ 470 (528)
..+..++|.+||++...+++..+|...+........++..++.|||+++++||+||.+.+||.++.+..++...++.++.
T Consensus 401 ~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~ 480 (536)
T PLN02281 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFA 480 (536)
T ss_pred cCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHh
Confidence 54556889999999988888777765433333444567788999999999999999999998776434444445466778
Q ss_pred HHHHhhHHHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009689 471 EQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 526 (528)
Q Consensus 471 ~~V~~ED~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al~~g~~~~p~~~ 526 (528)
..+|.||+.|+|+||+++......+++++.+|+++++||||++++.++.+++||++
T Consensus 481 ~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 481 EQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred hHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 89999999999999999988777888999999999999999999999999999985
No 2
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=2.1e-47 Score=415.86 Aligned_cols=300 Identities=22% Similarity=0.431 Sum_probs=216.5
Q ss_pred cccccCceEEEeecCCCCCCC-e------eeEEEEEc-cCCcEEEEeccCCCCCCCCCCCCcc-ceeEeccCCCeeEcCC
Q 009689 211 NTRLKNFWFPVAFSTDLKDDT-M------EPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 281 (528)
Q Consensus 211 ~~~~~~~W~~v~~s~eL~~~~-~------~~ivl~R~-~~G~v~A~~n~CpHRga~Ls~G~v~-~~~i~CPYHGW~fd~d 281 (528)
...|++.||+||.++||+++. . +++||||+ .+|+++||.|+||||+++|+.|+++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 457899999999999997653 2 99999999 8999999999999999999999986 6799999999999999
Q ss_pred CCcccCCCccc----------ccccccccceeeecceEEEcCCCCC----CCCCCCCCC---CCCCCeeeeEEEEEEecc
Q 009689 282 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE 344 (528)
Q Consensus 282 G~~~~iP~~~~----------~~~~l~~~pv~e~~G~IwV~~~~~~----p~~~lp~~~---~~~~~~~~~~~~~~~~~n 344 (528)
|+|+.||+.+. ...++++|||++++|+||||+++++ +...+|.+. ..++|... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999997531 2357999999999999999998642 122344432 22445432 345689999
Q ss_pred hhhHhhhcCCCCCCCCCCccccccCCC-CCceeeee-cCCCCCCcccc-CCCcceEEcCceeEEEEeeecCCCCcCCCCc
Q 009689 345 HGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFL-TPASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEGQNT 421 (528)
Q Consensus 345 wk~~vEN~lD~~H~~~vH~~t~~~~~~-vp~~v~~~-~~~~~~~g~~~-~~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~ 421 (528)
|++++||++|+||++|+|++++|.... .+...+.. ....++.+.+. .......|.+||++...+++.......+
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~~~~~~--- 319 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTKLPIVG--- 319 (539)
T ss_pred chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeeccccCCC---
Confidence 999999999999999999999986421 12111111 11123333221 2234578999998776655431100001
Q ss_pred cccceeeEEEEEEecCCCCeeeeeeeeeccchh-------hccCcchHHHHHHH-HHHHHHhhHHHHHHHHhhhccCC-C
Q 009689 422 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS-------VLKHVPFMQYLWRH-FAEQVLNEDLRLVLGQQERMNNG-A 492 (528)
Q Consensus 422 ~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~-------~~~~~p~~~~~~~~-~~~~V~~ED~~ile~qQ~~l~~g-~ 492 (528)
.....+...++++|+++++||++|.+.+||.. |.+.+| .++.+ ..++|++||+.++++|++.+... .
T Consensus 320 -~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~P---rW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~~ 395 (539)
T PLN02518 320 -DQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVP---RWYEHWTSNKVYDGDMIVLQGQEKIFLSKSG 395 (539)
T ss_pred -CcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCc---hHHHHhhhccchHhHHHHHHHHHHHHhhccc
Confidence 01123445678899999999999998887632 222333 33322 25789999999999998876431 1
Q ss_pred -----------CCCCCCCcCChHHHHHHHHHHHHHcC
Q 009689 493 -----------NVWNLPVGYDKLGVRYRLWRDALEKG 518 (528)
Q Consensus 493 -----------~~~~l~~~aD~~~i~yRrwl~al~~g 518 (528)
..+++|+.+|+++++||||+++++.|
T Consensus 396 e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g 432 (539)
T PLN02518 396 EGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS 432 (539)
T ss_pred cccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence 13478999999999999999998753
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=7.6e-48 Score=398.23 Aligned_cols=263 Identities=38% Similarity=0.769 Sum_probs=216.2
Q ss_pred cccCceEEEeecCCC-CCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCc
Q 009689 213 RLKNFWFPVAFSTDL-KDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 284 (528)
Q Consensus 213 ~~~~~W~~v~~s~eL-~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~ 284 (528)
..++.||+||+++|| +++.. ++++|||+.+|+++|+.|+||||+++|+.|.++++.|+||||||+||.+|+|
T Consensus 68 ~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~C 147 (394)
T PLN00095 68 DARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGEC 147 (394)
T ss_pred chhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCCE
Confidence 458999999999999 44432 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccc--ccccccccceeeecceEEEcCCCCCCCC------------------CCCC-CCCCCCCeeeeEEEEEEec
Q 009689 285 EKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMELPI 343 (528)
Q Consensus 285 ~~iP~~~~--~~~~l~~~pv~e~~G~IwV~~~~~~p~~------------------~lp~-~~~~~~~~~~~~~~~~~~~ 343 (528)
+.+|+... .+.++.+|||++++|+||||+++..|.. ..|. +.++++|..+.+..+|++|
T Consensus 148 ~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp~ 227 (394)
T PLN00095 148 AKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIKL 227 (394)
T ss_pred eeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEeccc
Confidence 99997532 3467899999999999999998754431 2333 4445788877777789999
Q ss_pred chhhHhhhcCCCCC-CCCCCccccc----cC---CCCCceeeeecCCCCCCccccCCCcceEEcCceeEEEEeeecC-CC
Q 009689 344 EHGLLLDNLLDLAH-APFTHTSTFA----KG---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK-PG 414 (528)
Q Consensus 344 nwk~~vEN~lD~~H-~~~vH~~t~~----~~---~~vp~~v~~~~~~~~~~g~~~~~~~~~~f~~P~~vl~~~g~~~-pg 414 (528)
.|.+++||+||++| .+|+|+.||. +. +..+.... .....++.|.|++++++|+|.+||++.+++++.+ ||
T Consensus 228 d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~~g 306 (394)
T PLN00095 228 DADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDGPG 306 (394)
T ss_pred cHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeecccccCC
Confidence 99999999999999 6999998885 11 11221111 1224467888999999999999999999999875 55
Q ss_pred CcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchh---hccCcchHHHHHHHHHHHHHhhHHHHHHH
Q 009689 415 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVLG 483 (528)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~V~~ED~~ile~ 483 (528)
+.. .|..|++++|+|+|.++++||++++|++||.. |...+|. ..|.+++.+|+.||++++.+
T Consensus 307 ~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 307 GGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVRA 371 (394)
T ss_pred CCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHhc
Confidence 533 35578999999999999999999999999975 5555664 78899999999999998753
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=338.75 Aligned_cols=309 Identities=25% Similarity=0.391 Sum_probs=210.0
Q ss_pred ccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCC-Ce------eeEEEEEccCCcEEEEe
Q 009689 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDD-TM------EPWVIFRGKDGIPGCVQ 249 (528)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~-~~------~~ivl~R~~~G~v~A~~ 249 (528)
..+....||++.+++|++.+| .+.||+||+++||+++ ++ +++||+|+.+|+++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~ 66 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIF-----------------YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALA 66 (367)
T ss_pred cCCCccccCHHHHHHHHHHhh-----------------hhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEe
Confidence 456677899999999999986 3489999999999985 32 99999999999999999
Q ss_pred ccCCCCCCCCCCCCccc-eeEeccCCCeeEcCCCCcccCCC--ccc----ccccccccceeeecceEEEcCCCCCCCC--
Q 009689 250 NTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA-- 320 (528)
Q Consensus 250 n~CpHRga~Ls~G~v~~-~~i~CPYHGW~fd~dG~~~~iP~--~~~----~~~~l~~~pv~e~~G~IwV~~~~~~p~~-- 320 (528)
|+|||||++|+.|++.+ +.|+||||||+||++|+|+++|. ... .+.++.+||+++++|+||||+++++++.
T Consensus 67 d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~ 146 (367)
T COG4638 67 DVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEA 146 (367)
T ss_pred ccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhH
Confidence 99999999999999988 89999999999999999999994 321 2368999999999999999999876331
Q ss_pred -CCCCCC-CCCCCeee-eEEEEEEecchhhHhhhcCC-CCCCCCCCccccccCCCCC---ceeee--------ecCCCCC
Q 009689 321 -TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP---SLVKF--------LTPASGL 385 (528)
Q Consensus 321 -~lp~~~-~~~~~~~~-~~~~~~~~~nwk~~vEN~lD-~~H~~~vH~~t~~~~~~vp---~~v~~--------~~~~~~~ 385 (528)
..|... ...++... ......+++|||+++||++| +||++++|+++++...... ..... .......
T Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (367)
T COG4638 147 FLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFF 226 (367)
T ss_pred hcccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCcc
Confidence 112222 22233322 45667889999999998887 9999999998876431100 00000 0000000
Q ss_pred C-cccc--------CC-----CcceEEcCcee-EEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeec
Q 009689 386 Q-GYWD--------PY-----PIDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 450 (528)
Q Consensus 386 ~-g~~~--------~~-----~~~~~f~~P~~-vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~ 450 (528)
. -.+. .. ...+.+..|+. +... ..........+.|.++++|.+......
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~~~~~~~~~~~p~~~~~~~~~~~~~~ 290 (367)
T COG4638 227 QPLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWNH----------------VTVDDVIVFFVQPIDEDETMVTLVWLV 290 (367)
T ss_pred CCcchhhhccccccccccccCceeEEEEcCCchheee----------------ecccceeEEEEEecCCceeEEEeeeee
Confidence 0 0000 00 00112222321 1100 001123344579999999998765332
Q ss_pred cchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHHHcCC
Q 009689 451 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 519 (528)
Q Consensus 451 ~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al~~g~ 519 (528)
... .......+...+..+...++.||+.|+|.||.+..+... ....+...|.+.+++++|+.+.....
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (367)
T COG4638 291 LPD-LVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERLVLY 359 (367)
T ss_pred ccc-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHHhhh
Confidence 111 111222334455567778999999999999997666444 34467788999999999987654333
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=5.3e-36 Score=320.15 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=139.3
Q ss_pred ccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCC------e--eeEEEEEccCCcEEEE
Q 009689 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDT------M--EPWVIFRGKDGIPGCV 248 (528)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~------~--~~ivl~R~~~G~v~A~ 248 (528)
..+++..|||++|++|+++||.++|. .||+++||+++. + .+|+|+|+++|+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF~~~W~-----------------~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIFEGNWI-----------------YLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHhhhCCE-----------------EEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 57888999999999999999976666 578888887663 1 8999999999999999
Q ss_pred eccCCCCCCCCCCCC-ccceeEeccCCCeeEcCCCCcccCCCccc----------ccccccccce-eeecceEEEcCCCC
Q 009689 249 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLPC-FEQEGMIWIWPGDE 316 (528)
Q Consensus 249 ~n~CpHRga~Ls~G~-v~~~~i~CPYHGW~fd~dG~~~~iP~~~~----------~~~~l~~~pv-~e~~G~IwV~~~~~ 316 (528)
.|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... .+.+|.+++. +.++|||||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999864 56779999999999999999999997421 1357999974 55689999999876
Q ss_pred CCCCCCCCCCCC-------------CCCeee-eEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 009689 317 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 367 (528)
Q Consensus 317 ~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 367 (528)
+| ++++++++ .++... ....+++++|||+++||++|+||++++|++++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 53 34443321 233322 345678999999999999999999999987754
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=3.4e-35 Score=313.91 Aligned_cols=173 Identities=19% Similarity=0.302 Sum_probs=141.8
Q ss_pred ccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCC------e--eeEEEEEccCCcEEEE
Q 009689 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDT------M--EPWVIFRGKDGIPGCV 248 (528)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~------~--~~ivl~R~~~G~v~A~ 248 (528)
..+.+..|||++|++|+++||.++|. .||+++||+++. + ++++|+|+++|+++||
T Consensus 15 ~v~~~~ytd~~if~~E~~~IF~~~W~-----------------~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~ 77 (438)
T TIGR03228 15 RIARDMFTEPELFDLEMELIFEKNWI-----------------YACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHAL 77 (438)
T ss_pred ecChheECCHHHHHHHHHHHHhhCCE-----------------EEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEE
Confidence 47788999999999999999876666 577788887642 1 9999999999999999
Q ss_pred eccCCCCCCCCCC-CCccceeEeccCCCeeEcCCCCcccCCCcc-------cccccccccceeeecceEEEcCCCCCCCC
Q 009689 249 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTA 320 (528)
Q Consensus 249 ~n~CpHRga~Ls~-G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~-------~~~~~l~~~pv~e~~G~IwV~~~~~~p~~ 320 (528)
.|+|||||++|+. +.++.+.|+||||||+|+.||+|+++|... ..+.+|.+++|.+++||||++++++++ .
T Consensus 78 ~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~ 156 (438)
T TIGR03228 78 VNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-D 156 (438)
T ss_pred cccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-C
Confidence 9999999999996 888888999999999999999999998542 134678889999999999999987532 2
Q ss_pred CCCCCCC--------------CCCCeee-eEEEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 009689 321 TIPCLLP--------------PSGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 367 (528)
Q Consensus 321 ~lp~~~~--------------~~~~~~~-~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 367 (528)
+++++++ ..++.+. ....+.+++|||+.+||++|+||++++|+++++
T Consensus 157 ~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 157 SLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 3444432 1124332 244678999999999999999999999988764
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.95 E-value=2.2e-28 Score=221.87 Aligned_cols=116 Identities=66% Similarity=1.391 Sum_probs=105.8
Q ss_pred ccCCCCCccccccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCC
Q 009689 203 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG 275 (528)
Q Consensus 203 ~~G~~~~~~~~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHG 275 (528)
+.|+..++...+++.||+|++++||+++.+ ++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg 82 (129)
T cd04337 3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG 82 (129)
T ss_pred ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence 457888899999999999999999998753 8999999999999999999999999999999999999999999
Q ss_pred eeEcCCCCcccCCCcccccccccccceeeecceEEEcCCCCCC
Q 009689 276 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 276 W~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
|+||.||+|+.+|..+....++++||+++++|+||||+++++|
T Consensus 83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 9999999999999765445689999999999999999987654
No 8
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.95 E-value=3.1e-28 Score=219.14 Aligned_cols=103 Identities=34% Similarity=0.769 Sum_probs=93.0
Q ss_pred CceEEEeecCCCCCCCe------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCC
Q 009689 216 NFWFPVAFSTDLKDDTM------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 289 (528)
Q Consensus 216 ~~W~~v~~s~eL~~~~~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~ 289 (528)
..||+|+.++||+.+++ ++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|+
T Consensus 2 ~~W~~v~~~~~l~~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP~ 81 (123)
T cd03537 2 ASWYVAMRSDDLKDKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIPG 81 (123)
T ss_pred CcEEEEEEHHHcCCCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECCC
Confidence 57999999999986643 999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc---------ccccccccceeeecceEEEcCCCCCC
Q 009689 290 TQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 290 ~~~---------~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
.+. ...++++|||+|++|+||||++++.|
T Consensus 82 ~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 82 HSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 432 23679999999999999999987554
No 9
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.95 E-value=6.8e-28 Score=220.01 Aligned_cols=114 Identities=31% Similarity=0.819 Sum_probs=99.9
Q ss_pred CCCCCccccccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCee
Q 009689 205 GPVQPYNTRLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWE 277 (528)
Q Consensus 205 G~~~~~~~~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~ 277 (528)
|+.......|++.|++|+.++||+++.+ ++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+
T Consensus 5 ~~~~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~ 84 (134)
T cd04338 5 TPENVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQ 84 (134)
T ss_pred cCCcccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCE
Confidence 3334445678999999999999988742 899999999999999999999999999999999999999999999
Q ss_pred EcCCCCcccCCCccc-----ccccccccceeeecceEEEcCCCCCC
Q 009689 278 YSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 278 fd~dG~~~~iP~~~~-----~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
||.||+|+.+|.... ...+|++|||++++|+|||++++.+|
T Consensus 85 Fd~~G~~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 85 FGGEGKCVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred ECCCCCEEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999999999997632 24669999999999999999987554
No 10
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.95 E-value=1.5e-27 Score=220.29 Aligned_cols=123 Identities=34% Similarity=0.750 Sum_probs=107.3
Q ss_pred cccCCCCCccccccCceEEEeecCCCC-CCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccC
Q 009689 202 NVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPY 273 (528)
Q Consensus 202 ~~~G~~~~~~~~~~~~W~~v~~s~eL~-~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPY 273 (528)
..+|+-+|....+++.|++|+.+++|+ ++.. .+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~ 85 (144)
T cd03479 6 TRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCY 85 (144)
T ss_pred eecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccC
Confidence 457888999999999999999999999 4532 88999999999999999999999999999999899999999
Q ss_pred CCeeEcCCCCcccCCCccc-----ccccccccceeeecceEEEcCCCCCCCCCCCC
Q 009689 274 HGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 324 (528)
Q Consensus 274 HGW~fd~dG~~~~iP~~~~-----~~~~l~~~pv~e~~G~IwV~~~~~~p~~~lp~ 324 (528)
|||+||.+|+|+.+|+.+. ...+|++|||++++|+|||++++..+++++|+
T Consensus 86 Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~ 141 (144)
T cd03479 86 HGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPR 141 (144)
T ss_pred CCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCC
Confidence 9999999999999997643 24679999999999999999986433334544
No 11
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.94 E-value=1.4e-27 Score=222.02 Aligned_cols=124 Identities=23% Similarity=0.420 Sum_probs=105.6
Q ss_pred cCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CCe-------eeEEEEEccCCcEEEEe
Q 009689 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTM-------EPWVIFRGKDGIPGCVQ 249 (528)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~~-------~~ivl~R~~~G~v~A~~ 249 (528)
.+++..||++.|+.|+++||+ .+.|++|+++++|++ +.. .+++|+|+.+|+++|+.
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~ 65 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWV 65 (150)
T ss_pred CChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEc
Confidence 356789999999999999985 134557899999985 432 78999999999999999
Q ss_pred ccCCCCCCCCCCCC-ccceeEeccCCCeeEcCCCCcccCCCcc-------------cccccccccceeeecceEEEcCCC
Q 009689 250 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGD 315 (528)
Q Consensus 250 n~CpHRga~Ls~G~-v~~~~i~CPYHGW~fd~dG~~~~iP~~~-------------~~~~~l~~~pv~e~~G~IwV~~~~ 315 (528)
|+|||||++|+.|. ++++.|+||||||+||++|+|+++|..+ ..+.+|++|+|.+++|+|||++++
T Consensus 66 n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 66 NRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 99999999999874 5678999999999999999999999642 124689999999999999999987
Q ss_pred CC
Q 009689 316 EP 317 (528)
Q Consensus 316 ~~ 317 (528)
++
T Consensus 146 ~~ 147 (150)
T cd03545 146 EV 147 (150)
T ss_pred CC
Confidence 54
No 12
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.93 E-value=2.4e-26 Score=210.83 Aligned_cols=106 Identities=30% Similarity=0.805 Sum_probs=94.2
Q ss_pred cccCceEEEeecCCCCCCCe-------eeEEEEEcc-CCcEEEEeccCCCCCCCCCCCCcc-ceeEeccCCCeeEcCCCC
Q 009689 213 RLKNFWFPVAFSTDLKDDTM-------EPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 283 (528)
Q Consensus 213 ~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~-~G~v~A~~n~CpHRga~Ls~G~v~-~~~i~CPYHGW~fd~dG~ 283 (528)
.|++.|++|++++||+++.+ ++++|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 56899999999999998743 899999986 999999999999999999999875 579999999999999999
Q ss_pred cccCCCccc-------ccccccccceeeecceEEEcCCCCCC
Q 009689 284 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 284 ~~~iP~~~~-------~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997532 24679999999999999999987544
No 13
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.93 E-value=3.5e-26 Score=203.40 Aligned_cols=101 Identities=26% Similarity=0.672 Sum_probs=92.1
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 289 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~ 289 (528)
.||+|+.++||+++.+ ++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.||+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 4999999999998753 899999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--ccccccccceeeecceEEEcCCCCC
Q 009689 290 TQL--RNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 290 ~~~--~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
... ...++++||+++++|+|||+++++.
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~ 110 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEG 110 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCC
Confidence 542 2467899999999999999998754
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.93 E-value=3.3e-26 Score=203.70 Aligned_cols=104 Identities=38% Similarity=0.889 Sum_probs=93.9
Q ss_pred ccCceEEEeecCCCCCCCe------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccC
Q 009689 214 LKNFWFPVAFSTDLKDDTM------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKM 287 (528)
Q Consensus 214 ~~~~W~~v~~s~eL~~~~~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~i 287 (528)
+++.|++|+.++||+.+.+ .+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+
T Consensus 2 ~~~~W~~v~~~~el~~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~~ 81 (116)
T cd03532 2 PRNAWYVAAWADELGDKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVHM 81 (116)
T ss_pred cCCcEEEEEEHHHcCCCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEeC
Confidence 5789999999999994432 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc--cccccccccceeeecceEEEcCCCCC
Q 009689 288 PSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 288 P~~~--~~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
|... ....+|++|||++++|+|||++++.+
T Consensus 82 p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 82 PGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 9864 23568999999999999999998643
No 15
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.92 E-value=1.8e-25 Score=202.84 Aligned_cols=101 Identities=23% Similarity=0.489 Sum_probs=88.0
Q ss_pred eEEEeecCCCCCC-Ce-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCC
Q 009689 218 WFPVAFSTDLKDD-TM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 288 (528)
Q Consensus 218 W~~v~~s~eL~~~-~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP 288 (528)
|++||+++||+++ .. .+++|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 8999999999864 32 78999999999999999999999999998764 557899999999999999999999
Q ss_pred Ccc-----------------cccccccccceeeecceEEEcCCCCCC
Q 009689 289 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 289 ~~~-----------------~~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
... ..+.+|.+++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124679999999999999999987643
No 16
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.92 E-value=2.9e-25 Score=205.62 Aligned_cols=120 Identities=21% Similarity=0.428 Sum_probs=100.4
Q ss_pred CCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CCe-------eeEEEEEccCCcEEEEeccCC
Q 009689 182 PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTM-------EPWVIFRGKDGIPGCVQNTCA 253 (528)
Q Consensus 182 ~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~~-------~~ivl~R~~~G~v~A~~n~Cp 253 (528)
..+|+++++.|++++|+++ |++|++.++|++ +.. .+++|+|+.+|+++|+.|+||
T Consensus 4 ~y~~~~~~~~e~~~i~~~~-----------------W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~Cp 66 (146)
T cd03538 4 VYTDPEIFALEMERLFGNA-----------------WIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCP 66 (146)
T ss_pred eEcCHHHHHHHHHHHhhcC-----------------CEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCc
Confidence 4689999999999998654 557899999984 321 899999999999999999999
Q ss_pred CCCCCCCC-CCcc-ceeEeccCCCeeEcCCCCcccCCCccc----------cccccccc-ceeeecceEEEcCCCCCC
Q 009689 254 HRACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 254 HRga~Ls~-G~v~-~~~i~CPYHGW~fd~dG~~~~iP~~~~----------~~~~l~~~-pv~e~~G~IwV~~~~~~p 318 (528)
|||++|+. |.++ ++.|+||||||+||.||+|+.+|..+. ...+|.++ .|.+++|||||++++++|
T Consensus 67 Hrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 67 HKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 99999975 4454 567999999999999999999997431 24689999 688899999999987543
No 17
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.92 E-value=4e-25 Score=202.22 Aligned_cols=103 Identities=34% Similarity=0.711 Sum_probs=90.1
Q ss_pred cccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCC--ccceeEeccCCCeeEcC-CC
Q 009689 213 RLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 282 (528)
Q Consensus 213 ~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~--v~~~~i~CPYHGW~fd~-dG 282 (528)
.|++.|++|+.++||+++.. ++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||. +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 57899999999999998743 8999999 59999999999999999999985 45789999999999996 89
Q ss_pred CcccCCCccc----ccccccccceeeecceEEEcCCCC
Q 009689 283 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 283 ~~~~iP~~~~----~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
+|+.+|..+. ...+|++|||++++|+|||++++.
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~ 126 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDG 126 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCc
Confidence 9998875432 146799999999999999999764
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.92 E-value=2.9e-25 Score=198.63 Aligned_cols=100 Identities=27% Similarity=0.497 Sum_probs=91.2
Q ss_pred ceEEEeecCCCCCCC--e------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCC
Q 009689 217 FWFPVAFSTDLKDDT--M------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 288 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~--~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP 288 (528)
.|++|++++||+++. + .+++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998763 1 99999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc------ccccccccceeeecceEEEcCCCC
Q 009689 289 STQL------RNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 289 ~~~~------~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
.... .+.+|.+++|.+++|||||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 7642 357899999999999999999764
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.92 E-value=4.3e-25 Score=200.11 Aligned_cols=106 Identities=24% Similarity=0.449 Sum_probs=90.5
Q ss_pred cccCceEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCC
Q 009689 213 RLKNFWFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGK 283 (528)
Q Consensus 213 ~~~~~W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~ 283 (528)
.|.+.|++|++++||+++. . .+++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+
T Consensus 4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~ 83 (128)
T cd03472 4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGN 83 (128)
T ss_pred hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcC
Confidence 3567788999999998742 1 78999999999999999999999999999874 4568999999999999999
Q ss_pred cccCCCccc--------ccccccccceeeecceEEEcCCCCCC
Q 009689 284 CEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 284 ~~~iP~~~~--------~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
|+++|..+. .+..|.+++|.+++|||||++++++|
T Consensus 84 ~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 84 LVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred EEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 999998532 13568899999999999999987643
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.90 E-value=3.7e-24 Score=189.80 Aligned_cols=100 Identities=34% Similarity=0.713 Sum_probs=90.4
Q ss_pred eEEEeecCCCC-CCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCC
Q 009689 218 WFPVAFSTDLK-DDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 288 (528)
Q Consensus 218 W~~v~~s~eL~-~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP 288 (528)
||+||.++||+ ++.. .+++|+|+.+|+++|+.|+|||||++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 7642 88999999999999999999999999999998 789999999999999999999999
Q ss_pred Cccc------ccccccccceeeecceEEEcCCCCC
Q 009689 289 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 289 ~~~~------~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
+... ...+|++||+++++|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2467999999999999999997654
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.90 E-value=4.1e-24 Score=192.29 Aligned_cols=102 Identities=21% Similarity=0.549 Sum_probs=87.8
Q ss_pred CceEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccc-eeEeccCCCeeEcCCCCccc
Q 009689 216 NFWFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 286 (528)
Q Consensus 216 ~~W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~-~~i~CPYHGW~fd~dG~~~~ 286 (528)
+.|++|++++||+++. . ++++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 4699999999998853 1 7899999999999999999999999999987664 68999999999999999999
Q ss_pred CCCccc--------ccccccccceee-ecceEEEcCCCCC
Q 009689 287 MPSTQL--------RNVKIKSLPCFE-QEGMIWIWPGDEP 317 (528)
Q Consensus 287 iP~~~~--------~~~~l~~~pv~e-~~G~IwV~~~~~~ 317 (528)
+|.... ...+|++||+.+ ++|||||++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~ 120 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKA 120 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCC
Confidence 997432 236799998655 7999999998754
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.90 E-value=7.7e-24 Score=190.55 Aligned_cols=100 Identities=18% Similarity=0.375 Sum_probs=87.2
Q ss_pred eEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCcc-ceeEeccCCCeeEcCCCCcccCC
Q 009689 218 WFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 288 (528)
Q Consensus 218 W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~-~~~i~CPYHGW~fd~dG~~~~iP 288 (528)
|+.||+++||+++. . .+++|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 89999999999853 1 778999999999999999999999999987654 35799999999999999999999
Q ss_pred Cccc---------ccccccccceeeecceEEEcCCCCC
Q 009689 289 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 289 ~~~~---------~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
..+. ...+|++|+|++++|+|||++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~ 118 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDG 118 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCC
Confidence 7421 2367999999999999999998754
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.87 E-value=1.5e-22 Score=182.34 Aligned_cols=101 Identities=26% Similarity=0.530 Sum_probs=85.3
Q ss_pred eEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCC
Q 009689 218 WFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 288 (528)
Q Consensus 218 W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP 288 (528)
|+.||+.+||+++. . ++++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+++|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 88999999999853 2 88999999999999999999999999998754 556999999999999999999999
Q ss_pred Cccc---------c-cccccccc-eeeecceEEEcCCCCCC
Q 009689 289 STQL---------R-NVKIKSLP-CFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 289 ~~~~---------~-~~~l~~~p-v~e~~G~IwV~~~~~~p 318 (528)
.... . ..+|..++ ++.++||||+++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6421 1 35788886 45578999999987643
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.86 E-value=5.2e-22 Score=170.55 Aligned_cols=89 Identities=28% Similarity=0.586 Sum_probs=81.9
Q ss_pred eEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCCC
Q 009689 218 WFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 289 (528)
Q Consensus 218 W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP~ 289 (528)
|++++.++||+++.. .+++|+|+ +|+++|+.|+|||||++|+.|.+.++.|+||||||+||. +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 899999999988753 88999998 569999999999999999999888899999999999997 999999887
Q ss_pred cccccccccccceeeecceEEE
Q 009689 290 TQLRNVKIKSLPCFEQEGMIWI 311 (528)
Q Consensus 290 ~~~~~~~l~~~pv~e~~G~IwV 311 (528)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 4 47999999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.86 E-value=8.5e-22 Score=169.66 Aligned_cols=90 Identities=22% Similarity=0.525 Sum_probs=80.7
Q ss_pred eEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCCC
Q 009689 218 WFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 289 (528)
Q Consensus 218 W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP~ 289 (528)
|++|+.++||+++.. .+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||. +|.|.+ |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 899999999998742 899999998899999999999999999999998999999999999996 788754 33
Q ss_pred cccccccccccceeeecceEEEc
Q 009689 290 TQLRNVKIKSLPCFEQEGMIWIW 312 (528)
Q Consensus 290 ~~~~~~~l~~~pv~e~~G~IwV~ 312 (528)
. .+|++||+++++|.|||.
T Consensus 80 ~----~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 E----GCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C----CccceEeEEEECCEEEEC
Confidence 2 479999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.86 E-value=2e-21 Score=170.37 Aligned_cols=95 Identities=21% Similarity=0.395 Sum_probs=82.9
Q ss_pred eEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCCC
Q 009689 218 WFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 289 (528)
Q Consensus 218 W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP~ 289 (528)
|++|+..+||+++.. .+++|+|+.+|+++|+.|+|||||++|+.|..+++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 889999999998853 678899999999999999999999999999988889999999999996 566654 32
Q ss_pred cccccccccccceeeecceEEEcCCCCC
Q 009689 290 TQLRNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 290 ~~~~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
..+|++||+++++|.|||+++..+
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcC
Confidence 358999999999999999996543
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.84 E-value=9.2e-21 Score=164.78 Aligned_cols=92 Identities=21% Similarity=0.421 Sum_probs=84.3
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEc-CCCCcccCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 288 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd-~dG~~~~iP 288 (528)
.|+.++..+||+++.. .+++|+|..+|+++|++|.|||+|++|+.|.+.++.|.||+|||+|| .||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 4999999999998853 88999998889999999999999999999999999999999999999 599999888
Q ss_pred CcccccccccccceeeecceEEEc
Q 009689 289 STQLRNVKIKSLPCFEQEGMIWIW 312 (528)
Q Consensus 289 ~~~~~~~~l~~~pv~e~~G~IwV~ 312 (528)
.. .+|++||+++++|.|||.
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred cc----CCcceEeEEEECCEEEEe
Confidence 64 379999999999999985
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.84 E-value=8.1e-21 Score=165.44 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=79.3
Q ss_pred eEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCC-CCCCCcc----ceeEeccCCCeeEc-CCCCc
Q 009689 218 WFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 284 (528)
Q Consensus 218 W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~-Ls~G~v~----~~~i~CPYHGW~fd-~dG~~ 284 (528)
|++||..+||+++.. .+++|+|..+|+++|+.|+|||++++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999998742 89999999887999999999999997 7888753 34899999999999 69999
Q ss_pred ccCCCcccccccccccceeeecceEEE
Q 009689 285 EKMPSTQLRNVKIKSLPCFEQEGMIWI 311 (528)
Q Consensus 285 ~~iP~~~~~~~~l~~~pv~e~~G~IwV 311 (528)
+..|. .+|++||+++++|.|||
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYV 102 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEE
Confidence 98875 47999999999999998
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.83 E-value=8.1e-21 Score=165.79 Aligned_cols=92 Identities=24% Similarity=0.471 Sum_probs=81.6
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCC-CCCCCCCCcccee----EeccCCCeeEcC-CCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 283 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHR-ga~Ls~G~v~~~~----i~CPYHGW~fd~-dG~ 283 (528)
.|++|+.++||+++.. .+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 4999999999998852 99999998889999999999999 8999999776554 999999999995 899
Q ss_pred cccCCCcccccccccccceeeecceEEEcC
Q 009689 284 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 313 (528)
Q Consensus 284 ~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~ 313 (528)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 987664 4799999999999999953
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.83 E-value=1.6e-20 Score=164.50 Aligned_cols=94 Identities=20% Similarity=0.367 Sum_probs=83.4
Q ss_pred ceEEEeecCCCCCCCe------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccc-eeEeccCCCeeEcC-CCCcccCC
Q 009689 217 FWFPVAFSTDLKDDTM------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKMP 288 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~-~~i~CPYHGW~fd~-dG~~~~iP 288 (528)
.|+.++..+||+++.. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. ||+|+..|
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p 80 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTSPVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLP 80 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCCCeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCC
Confidence 3889999999999853 56888886 8999999999999999999999887 79999999999995 89999877
Q ss_pred CcccccccccccceeeecceEEEcCCC
Q 009689 289 STQLRNVKIKSLPCFEQEGMIWIWPGD 315 (528)
Q Consensus 289 ~~~~~~~~l~~~pv~e~~G~IwV~~~~ 315 (528)
.. .+|++|++++++|.|||.+..
T Consensus 81 ~~----~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 81 AT----DPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred CC----CCcceEeEEEECCEEEEEccC
Confidence 53 479999999999999998854
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.82 E-value=1.9e-20 Score=160.51 Aligned_cols=85 Identities=27% Similarity=0.541 Sum_probs=77.5
Q ss_pred EeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCCCccc
Q 009689 221 VAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQL 292 (528)
Q Consensus 221 v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP~~~~ 292 (528)
|+.++||+++.+ .+++|+|. +|+++|++|+|||++++|+.|.+.++.|+||||||+||. +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-- 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL-- 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc--
Confidence 788889988753 78999997 899999999999999999999988999999999999996 9999999875
Q ss_pred ccccccccceeeecceEE
Q 009689 293 RNVKIKSLPCFEQEGMIW 310 (528)
Q Consensus 293 ~~~~l~~~pv~e~~G~Iw 310 (528)
..|++||+++++|.||
T Consensus 80 --~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --CCcceEEEEEECCEEC
Confidence 3699999999999997
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.78 E-value=1.9e-19 Score=154.14 Aligned_cols=86 Identities=33% Similarity=0.709 Sum_probs=73.7
Q ss_pred ceEEEeecCCCCC-CCe------eeEEEEEccCCcEEEEeccCCCCCCCCCCCC--ccceeEeccCCCeeEcCC-CCccc
Q 009689 217 FWFPVAFSTDLKD-DTM------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCEK 286 (528)
Q Consensus 217 ~W~~v~~s~eL~~-~~~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~--v~~~~i~CPYHGW~fd~d-G~~~~ 286 (528)
.|++|+.++||++ +.+ ...+++++.+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+.
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDVGGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVG 80 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEETTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEcCCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEec
Confidence 5999999999999 543 5566667889999999999999999999994 456799999999999976 99999
Q ss_pred CCCcccccccccccceeeec
Q 009689 287 MPSTQLRNVKIKSLPCFEQE 306 (528)
Q Consensus 287 iP~~~~~~~~l~~~pv~e~~ 306 (528)
.|... +++.||+++++
T Consensus 81 ~p~~~----~l~~~~v~ve~ 96 (97)
T PF00355_consen 81 GPAPR----PLPLYPVKVEG 96 (97)
T ss_dssp STTCS----BSTEEEEEEET
T ss_pred CCCCC----CcCCCCeEEeC
Confidence 99863 78999998875
No 33
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.75 E-value=2.6e-18 Score=147.74 Aligned_cols=89 Identities=28% Similarity=0.617 Sum_probs=79.2
Q ss_pred eEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCCC
Q 009689 218 WFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 289 (528)
Q Consensus 218 W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP~ 289 (528)
|++++..++|+++.. .+++|+|..+|+++|+.|+|||++++|..|.+.++.|+||+|||+||. ||+|+..|+
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 889999999987742 889999998899999999999999999999888899999999999997 999999886
Q ss_pred cccccccccccceeee-cceEE
Q 009689 290 TQLRNVKIKSLPCFEQ-EGMIW 310 (528)
Q Consensus 290 ~~~~~~~l~~~pv~e~-~G~Iw 310 (528)
. ..|.+||+++. ++.||
T Consensus 81 ~----~~l~~~~v~~~~~~~~~ 98 (98)
T cd03467 81 P----RPLPKYPVKVEGDGVVW 98 (98)
T ss_pred C----CCcCEEEEEEeCCceEC
Confidence 4 58999999988 44443
No 34
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.75 E-value=3.3e-18 Score=149.86 Aligned_cols=91 Identities=30% Similarity=0.679 Sum_probs=82.7
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCC-CCCCCCCCCccce----eEeccCCCeeEc-CCCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYS-TDGK 283 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpH-Rga~Ls~G~v~~~----~i~CPYHGW~fd-~dG~ 283 (528)
.|++||..+||+++.. .+|+|||..+|+++|+.|.||| ++++|+.|.+.+. .|.||.|+|.|| .||+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 5999999999999852 9999999989999999999999 8999999998765 999999999999 5899
Q ss_pred cccCCCcccccccccccceeeecceEEEc
Q 009689 284 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 312 (528)
Q Consensus 284 ~~~iP~~~~~~~~l~~~pv~e~~G~IwV~ 312 (528)
|+..|. .++++|||++.+|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 988654 589999999999999984
No 35
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.74 E-value=7.7e-18 Score=148.44 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=79.0
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEc-cCCcEEEEeccCCCCCCC-CCCCCccc---e-eEeccCCCeeEc-CCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYS-TDG 282 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~-~~G~v~A~~n~CpHRga~-Ls~G~v~~---~-~i~CPYHGW~fd-~dG 282 (528)
.|..||..+||+++.. ..++|+|. .+|+++|+.|.|||.+++ |+.|.+.+ + .|+||.|||+|| .||
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999998853 88999995 589999999999999985 99998742 2 499999999999 599
Q ss_pred CcccCCCcccccccccccceeeecceEEEc
Q 009689 283 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 312 (528)
Q Consensus 283 ~~~~iP~~~~~~~~l~~~pv~e~~G~IwV~ 312 (528)
+|...|. .+|++|||++++|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9987654 479999999999999984
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=146.94 Aligned_cols=94 Identities=23% Similarity=0.495 Sum_probs=84.2
Q ss_pred CceEEEeecCCCCCCCe------e-eEEEEEccCCcEEEEeccCCCCCCCCCCCCccce-eEeccCCCeeEc-CCCCccc
Q 009689 216 NFWFPVAFSTDLKDDTM------E-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYS-TDGKCEK 286 (528)
Q Consensus 216 ~~W~~v~~s~eL~~~~~------~-~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~-~i~CPYHGW~fd-~dG~~~~ 286 (528)
..|+.+|..+||+++.. . ..++++..+|+++|+.|+|||.+++|+.|.+.++ .|+||.|+|.|| .||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 46999999999998842 3 6888888999999999999999999999999886 599999999999 5999999
Q ss_pred CCCcccccccccccceeeecceEEEcC
Q 009689 287 MPSTQLRNVKIKSLPCFEQEGMIWIWP 313 (528)
Q Consensus 287 iP~~~~~~~~l~~~pv~e~~G~IwV~~ 313 (528)
.|+.. .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99763 299999999999999976
No 37
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.73 E-value=5.1e-17 Score=153.00 Aligned_cols=171 Identities=21% Similarity=0.214 Sum_probs=110.3
Q ss_pred EEEEecchhhHhhhcCCCCCCCCCCccccccCCCC---CceeeeecCCCCCC-------------ccccC--CCcceEEc
Q 009689 338 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGLQ-------------GYWDP--YPIDMEFR 399 (528)
Q Consensus 338 ~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v---p~~v~~~~~~~~~~-------------g~~~~--~~~~~~f~ 399 (528)
.++++|||+.++||++|++|++|||+++++..... +...++.....++. ++-.. ......|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999998864221 11111110000000 00000 01234688
Q ss_pred CceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhc--cCcchHHHHHHHHHHHHHhhH
Q 009689 400 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 477 (528)
Q Consensus 400 ~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~V~~ED 477 (528)
+|+++........+|. ......+..++.++|+++++|++++.+++++.... ...+.+...+..+...|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 9998766554333322 11112456677889999999999998877764321 011223334445678899999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHH
Q 009689 478 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 478 ~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al 515 (528)
+.|+|+||+++.+. ...+....+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 22345667999999999999875
No 38
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.71 E-value=1.7e-17 Score=141.95 Aligned_cols=80 Identities=26% Similarity=0.461 Sum_probs=68.8
Q ss_pred EeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccc
Q 009689 221 VAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 293 (528)
Q Consensus 221 v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~ 293 (528)
++.++||+++.. .+++|+|+.+|+++|+.|+|||+|++|+.|.+ ++.|.||||||+||.||+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 456677777642 89999999999999999999999999998865 5699999999999999999999875
Q ss_pred cccccccceeee
Q 009689 294 NVKIKSLPCFEQ 305 (528)
Q Consensus 294 ~~~l~~~pv~e~ 305 (528)
..|.+|++...
T Consensus 78 -~~l~~y~v~~~ 88 (91)
T cd03477 78 -SGLKPADDAPI 88 (91)
T ss_pred -CCCCeeEeecc
Confidence 47889998654
No 39
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.64 E-value=4.1e-15 Score=139.10 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=99.4
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCccccccCC-----CCCceeeeecC----CCCCCcccc-------------CCCc
Q 009689 337 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI 394 (528)
Q Consensus 337 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~-----~vp~~v~~~~~----~~~~~g~~~-------------~~~~ 394 (528)
..++++||||+++||++|+||++++|+++++... ..+... ...+ .......|. ....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYR-VDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceE-EEeccCCCCChhhcccchhhhcccccccccccCe
Confidence 3578999999999999999999999999987421 111111 0000 000000010 0012
Q ss_pred ceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhh-ccCcchHHHHHHHHHHHH
Q 009689 395 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 473 (528)
Q Consensus 395 ~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~V 473 (528)
...+.+||+++... ...+.++.++|+++++|++.++++...... .+........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLY-----------------PDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeec-----------------CCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 24556788765432 123456678999999999999877643321 011111111112346889
Q ss_pred HhhHHHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHH
Q 009689 474 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 474 ~~ED~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al 515 (528)
+.||+.++|+||+++.++............++..|++|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987543322234457899999998754
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.62 E-value=1.1e-15 Score=138.04 Aligned_cols=78 Identities=19% Similarity=0.438 Sum_probs=65.6
Q ss_pred eeEEEEEccCCcE--EEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEE
Q 009689 233 EPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 310 (528)
Q Consensus 233 ~~ivl~R~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~Iw 310 (528)
.+.++++..+|++ +|++|+|||+|++|+.|.. ++.|+||+|||+||.+|+++..|.. ..|..|++++.+|.||
T Consensus 34 ~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~L~~y~V~vedg~I~ 108 (126)
T cd03471 34 DPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LSLALVHATVDDDKVV 108 (126)
T ss_pred CeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CCCceEeEEEECCEEE
Confidence 3445555569977 8999999999999998764 5699999999999999999988753 5899999999999999
Q ss_pred EcCCC
Q 009689 311 IWPGD 315 (528)
Q Consensus 311 V~~~~ 315 (528)
|.+..
T Consensus 109 V~~~~ 113 (126)
T cd03471 109 LSPWT 113 (126)
T ss_pred EEECc
Confidence 96543
No 41
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.61 E-value=1.7e-15 Score=137.18 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=74.9
Q ss_pred EEeecCCCCCCCe---------eeEEEEEcc---------CCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-
Q 009689 220 PVAFSTDLKDDTM---------EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 280 (528)
Q Consensus 220 ~v~~s~eL~~~~~---------~~ivl~R~~---------~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~- 280 (528)
.||..++|+++.+ .+++|+|.. +|+++|++|+|||+|++|+.|. .++.|+||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 4788888887743 368899974 7999999999999999999987 6789999999999996
Q ss_pred -CCCcccCCCcccccccccccceeee--cceEEE
Q 009689 281 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWI 311 (528)
Q Consensus 281 -dG~~~~iP~~~~~~~~l~~~pv~e~--~G~IwV 311 (528)
+|+|+..|.. ..|++||++++ +|.|||
T Consensus 84 tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~ 113 (126)
T cd03476 84 RGGQMVSGQAT----QNLPQIVLEYDEASGDIYA 113 (126)
T ss_pred CCCeEEcCCCC----CCCCeEEEEEECCCCEEEE
Confidence 4799987753 58999999999 999998
No 42
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.57 E-value=6e-14 Score=133.97 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=97.4
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCC----------CceeeeecCCC---CCCccccC---------CC
Q 009689 336 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------PSLVKFLTPAS---GLQGYWDP---------YP 393 (528)
Q Consensus 336 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v----------p~~v~~~~~~~---~~~g~~~~---------~~ 393 (528)
...++++||||+++|||+|+||++++|++|++..... +.......+.. ........ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 4567899999999999999999999999988642110 00000011100 00000000 01
Q ss_pred cceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhcc-CcchHHHHHHHHHHH
Q 009689 394 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK-HVPFMQYLWRHFAEQ 472 (528)
Q Consensus 394 ~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~ 472 (528)
....+.+||+++... | ....++.+.|+++++|++.+.++........ ........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALT----P-------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEec----C-------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 123346788776432 1 1234556799999999998876643221100 011112222335578
Q ss_pred HHhhHHHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHH
Q 009689 473 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 473 V~~ED~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al 515 (528)
|+.||..++|.+|+++.++..........+.++..|.+|+++.
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999986543222224588999999997753
No 43
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.50 E-value=3.7e-13 Score=127.57 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceee-------eecCCCC-CCccccCCC--cceEEcCceeEE
Q 009689 336 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------FLTPASG-LQGYWDPYP--IDMEFRPPCMVL 405 (528)
Q Consensus 336 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~-------~~~~~~~-~~g~~~~~~--~~~~f~~P~~vl 405 (528)
...+++++|||+++||++|+||++++|++++........... ...+... ....++... ....+.+||+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i 82 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML 82 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence 456788999999999999999999999999854211000000 0000000 011111111 123456888876
Q ss_pred EEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHh
Q 009689 406 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ 485 (528)
Q Consensus 406 ~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qQ 485 (528)
... | ..+.++.+.|+++++|++.+.++..... .....+....+ . ...|+.||..++|.+|
T Consensus 83 ~~~----~-------------~~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~v~~ED~~i~e~vQ 142 (175)
T cd08883 83 NRY----P-------------PGMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESI-E-SDRVQKEDIEICESVQ 142 (175)
T ss_pred eec----C-------------CeEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHH-H-HHHHHHHHHHHHHHHh
Confidence 532 1 1234556789999999998877653221 01111122222 2 5789999999999999
Q ss_pred hhccCCCC-CCCCCCcCChHHHHHHHHHHHH
Q 009689 486 ERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 486 ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al 515 (528)
++|.++.. .+.++...+.++..|++|+++.
T Consensus 143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 99998753 2334334578888999998764
No 44
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.50 E-value=5.6e-14 Score=127.70 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=73.3
Q ss_pred EEeecCCCCCCCe---------eeEEEEEc---------cCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCC
Q 009689 220 PVAFSTDLKDDTM---------EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 281 (528)
Q Consensus 220 ~v~~s~eL~~~~~---------~~ivl~R~---------~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~d 281 (528)
.+|..+||+++.+ .+++++|. .+|+++|++|+|||.+++|+.|. .++.|.||.|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 4888899988843 36788884 58999999999999999999875 67899999999999965
Q ss_pred --CCcccCCCcccccccccccceeee-cceEEE
Q 009689 282 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 311 (528)
Q Consensus 282 --G~~~~iP~~~~~~~~l~~~pv~e~-~G~IwV 311 (528)
|+|+..|.. .+|.+||+++. +|.||.
T Consensus 87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence 699987753 48999999997 589994
No 45
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.48 E-value=4.1e-13 Score=127.11 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=97.2
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCce-eeeecCCC-------C-------CCccccCC-Cc-ceEEc
Q 009689 337 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL-VKFLTPAS-------G-------LQGYWDPY-PI-DMEFR 399 (528)
Q Consensus 337 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~-v~~~~~~~-------~-------~~g~~~~~-~~-~~~f~ 399 (528)
..++++||||+++||++|+||++++|++|++........ .....+.. . ....|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 457899999999999999999999999998642110100 01000000 0 00001100 01 12345
Q ss_pred CceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCc-chHHHHHHHHH-HHHHhhH
Q 009689 400 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 477 (528)
Q Consensus 400 ~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~-p~~~~~~~~~~-~~V~~ED 477 (528)
+||+++... ...+.+..+.|.++++|.+.+.++.......... ......+ .+. ..|..||
T Consensus 84 FPN~~i~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ-----------------PDHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEec-----------------CCeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 787766432 1234456679999999999887765322111111 1111111 233 6889999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHHH
Q 009689 478 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 478 ~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~al 515 (528)
..++|.+|+++.++...+......+.++..|++|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654433346788999999998764
No 46
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.45 E-value=1.3e-12 Score=127.02 Aligned_cols=168 Identities=14% Similarity=0.045 Sum_probs=99.9
Q ss_pred CCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCcccccc------CCCCC------ceeeee----cC-----CCC---
Q 009689 329 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK------GWSVP------SLVKFL----TP-----ASG--- 384 (528)
Q Consensus 329 ~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~------~~~vp------~~v~~~----~~-----~~~--- 384 (528)
++++......++++||||+++||++|+||++++|+++... ....+ ...... .. ..+
T Consensus 6 ~~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T cd08884 6 ANLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAV 85 (205)
T ss_pred hhcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcc
Confidence 3455556677889999999999999999999999987631 00000 000000 00 000
Q ss_pred ---CCcccc--CCCcceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCc
Q 009689 385 ---LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV 459 (528)
Q Consensus 385 ---~~g~~~--~~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~ 459 (528)
+.+... .......+.+||+++... ...+.++.+.|+++++|++.+.++...... ...
T Consensus 86 ~p~~~~~~~~~~~~~~~~~lfPN~~~~~~-----------------~d~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~ 147 (205)
T cd08884 86 APPLPGLTEADDRGALYYTLYPNSFLHLH-----------------PDHVVTFRVLPLSPDETLVRCKWLVHPDAV-EGV 147 (205)
T ss_pred cCCCCCCCccccCceEEEEeCCcEEEEEc-----------------CCEEEEEEEEeCCCCceEEEEEEEECCchh-ccc
Confidence 000000 001123345777765432 123456668999999999988876542221 111
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCCCCCCCcCChHHHHHHHHHHH
Q 009689 460 PFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 514 (528)
Q Consensus 460 p~~~~~~~~~~~~V~~ED~~ile~qQ~~l~~g~~~~~l~~~aD~~~i~yRrwl~a 514 (528)
.+.......+...|..||..|+|.+|+++.++..........+.++..|.+|+++
T Consensus 148 ~~~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 148 DYDLDDLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 1111222346688999999999999999998754322222356888899999765
No 47
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.44 E-value=1e-12 Score=125.67 Aligned_cols=160 Identities=14% Similarity=0.024 Sum_probs=95.6
Q ss_pred EEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCceeeeec-----------CCCCCCccccCCCcceEEcCceeE
Q 009689 336 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLT-----------PASGLQGYWDPYPIDMEFRPPCMV 404 (528)
Q Consensus 336 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~~~~-----------~~~~~~g~~~~~~~~~~f~~P~~v 404 (528)
...++++||||+++||++|+||++++|+++++............. +........+.......+.+||++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 456789999999999999999999999999854210000000000 000000000001112345678887
Q ss_pred EEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHH-hhHHHHHHH
Q 009689 405 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 483 (528)
Q Consensus 405 l~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~ 483 (528)
++.. |+ ...+.++.+.|+++++|++.+.++.... ..... ......+...|+ .||..++|.
T Consensus 83 i~~~----~~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~~--~~~~~--~~~~~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVY----PG-----------AGNMGVINIIPVDAETTLQHYDFYFRDE--ELTDE--EKELIEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEee----CC-----------CCeEEEEEEEeCCCCeEEEEEEEEecCC--CccHH--HHHHHHHHHHhcchhhHHHHHH
Confidence 6542 11 0124456689999999999877663211 11111 111224567787 999999999
Q ss_pred HhhhccCCCC-CCCCC------CcCChHHHHHHHHHHH
Q 009689 484 QQERMNNGAN-VWNLP------VGYDKLGVRYRLWRDA 514 (528)
Q Consensus 484 qQ~~l~~g~~-~~~l~------~~aD~~~i~yRrwl~a 514 (528)
+|+++.++.. ...+. ...+.++..|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 9999998753 22232 2457888899999764
No 48
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.39 E-value=4.8e-13 Score=117.10 Aligned_cols=56 Identities=16% Similarity=0.462 Sum_probs=49.8
Q ss_pred eeEEEEEccCCcEEEEeccCCCCCCCCCCC--CccceeEeccCCCeeEc-CCCCcccCCC
Q 009689 233 EPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS 289 (528)
Q Consensus 233 ~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G--~v~~~~i~CPYHGW~fd-~dG~~~~iP~ 289 (528)
..|+|+|. +|+++|+.|+|||++++|+.| .++++.|+||+|||+|| .||+++..|.
T Consensus 31 ~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 31 KKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred cEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47888886 899999999999999999994 57888999999999999 5999987664
No 49
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.38 E-value=1.5e-12 Score=118.01 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=57.6
Q ss_pred CCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeec-ceEEE
Q 009689 242 DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 311 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~-G~IwV 311 (528)
+|+++|+.++|||.|+.+..+.+.++.|.||+|||+||.+|+.+..|.. .+|+.||++..+ +.|+|
T Consensus 59 ~~~~~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 59 KPEWLVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CCcEEEEeCcCCCCCCeeccccCCCCEEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence 6799999999999999988776677899999999999999999888764 589999998766 67765
No 50
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.29 E-value=5.7e-12 Score=120.63 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=63.1
Q ss_pred eEEEEEccCCcE--EEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEEE
Q 009689 234 PWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 311 (528)
Q Consensus 234 ~ivl~R~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~IwV 311 (528)
+.++++..+|++ +|++++|||.|++|..+..+ +.|.||+|||+||.+|+.+..|.. ..|++|++++.+|.|+|
T Consensus 87 ~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~~L~~y~v~v~~g~v~v 161 (178)
T PRK13474 87 PTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----LSLALVHVTVEDDKVLF 161 (178)
T ss_pred eEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----CCCCeEeEEEECCEEEE
Confidence 434444458998 67799999999999988754 599999999999999999888764 58999999999999999
Q ss_pred cC
Q 009689 312 WP 313 (528)
Q Consensus 312 ~~ 313 (528)
.+
T Consensus 162 ~~ 163 (178)
T PRK13474 162 SP 163 (178)
T ss_pred EE
Confidence 55
No 51
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.29 E-value=4.8e-12 Score=119.68 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=95.4
Q ss_pred EEEEecchhhHhhhcCCCCCCCCCCccccccCCCCCc------eeeeecCCCCCC-------------cccc--------
Q 009689 338 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS------LVKFLTPASGLQ-------------GYWD-------- 390 (528)
Q Consensus 338 ~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~------~v~~~~~~~~~~-------------g~~~-------- 390 (528)
.++++||||+++||++|+||++++|+++++....... ......+..... ....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 3568999999999999999999999998653211111 111111111000 0000
Q ss_pred ------CCCcceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHH
Q 009689 391 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 464 (528)
Q Consensus 391 ------~~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~ 464 (528)
.......+.+||+++... ++ + ..++.+.|.++++|.+.+..+...... .-+.+.+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----~~------------~-~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----PD------------H-FTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----TT------------T-TEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEec----cc------------c-cEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence 001124566898876532 11 1 125567999999999998776543211 1222222
Q ss_pred HHHHHHHH---HHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHH
Q 009689 465 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 515 (528)
Q Consensus 465 ~~~~~~~~---V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al 515 (528)
.+...... |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 23222333 899999999999999988643 2334457899999999887653
No 52
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=98.95 E-value=2.1e-09 Score=102.62 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=51.0
Q ss_pred CCcEEEEeccCCCCCCCCC-CCCcc-ceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecc
Q 009689 242 DGIPGCVQNTCAHRACPLH-LGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 307 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls-~G~v~-~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G 307 (528)
++++.|++++|||.|+.+. .+... .+.|.||+||++||.+|+.+..|.. ..|..||++..++
T Consensus 105 ~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~ 168 (174)
T TIGR01416 105 KPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSD 168 (174)
T ss_pred CCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCC
Confidence 5899999999999997654 44433 5689999999999999999887764 5899999987654
No 53
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.89 E-value=5.2e-09 Score=89.74 Aligned_cols=87 Identities=37% Similarity=0.773 Sum_probs=65.5
Q ss_pred EcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccc-hhhccCcchHHHHHHHHH-HHHHh
Q 009689 398 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHFA-EQVLN 475 (528)
Q Consensus 398 f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~-~~~~~~~p~~~~~~~~~~-~~V~~ 475 (528)
|.+||++.+.... .....+..+++++++|+|+++|+||+++++++++ ..+.+.+| .++.+.. +.|++
T Consensus 1 F~pPc~v~~~~~~--------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEG--------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEeccc--------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 6799999876111 0112234567888999999999999999999998 34445566 5555654 89999
Q ss_pred hHHHHHHHHhhhccC-CCCCC
Q 009689 476 EDLRLVLGQQERMNN-GANVW 495 (528)
Q Consensus 476 ED~~ile~qQ~~l~~-g~~~~ 495 (528)
||..++.+||+.+.+ |.+.|
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W 90 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNW 90 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcC
Confidence 999999999999987 66666
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.83 E-value=5.7e-09 Score=98.87 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCcEEEEeccCCCCCCCCC---------------CCCccceeEeccCCCeeEcC-CC-CcccCCCcccccccccccceee
Q 009689 242 DGIPGCVQNTCAHRACPLH---------------LGSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCFE 304 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls---------------~G~v~~~~i~CPYHGW~fd~-dG-~~~~iP~~~~~~~~l~~~pv~e 304 (528)
+|+++|++++|+|+|++|. .|...++.|.||+|||+||. +| ..+..|.. ..|..|+++.
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~~ 149 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILEY 149 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEEE
Confidence 6899999999999999775 24456789999999999996 45 45544543 4789999977
Q ss_pred e--cceEEE
Q 009689 305 Q--EGMIWI 311 (528)
Q Consensus 305 ~--~G~IwV 311 (528)
. .|.||.
T Consensus 150 d~~~d~iyA 158 (171)
T cd03475 150 DSSTDDLYA 158 (171)
T ss_pred eCCCCcEEE
Confidence 7 378886
No 55
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.71 E-value=7.2e-08 Score=96.67 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=53.6
Q ss_pred EEEEEec--CCCCeeeeeeeeeccchhhccC-c-----chHHHHHHHH--HHHHHhhHHHHHHHHhhhccCCCCCCCCCC
Q 009689 430 QLHVCLP--SSRKKTRLLYRMSLDFASVLKH-V-----PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV 499 (528)
Q Consensus 430 ~~~~~~P--vs~~~Tr~~~~~~~~~~~~~~~-~-----p~~~~~~~~~--~~~V~~ED~~ile~qQ~~l~~g~~~~~l~~ 499 (528)
.++.+.| .++++|.+...++....+.... . ...... ..+ ...|++||..+++.+|++|.++........
T Consensus 146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~ 224 (243)
T cd08882 146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA 224 (243)
T ss_pred EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence 4556678 5999999877765433221111 0 001111 112 368999999999999999998754322222
Q ss_pred cC-ChHHHHHHHHHHHH
Q 009689 500 GY-DKLGVRYRLWRDAL 515 (528)
Q Consensus 500 ~a-D~~~i~yRrwl~al 515 (528)
.. +..+..|.+|++.+
T Consensus 225 ~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 225 NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33 47888999998764
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.71 E-value=9.4e-08 Score=94.57 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=27.9
Q ss_pred EEEEecchhhHhhhcCCCCCCCCCCc--ccccc
Q 009689 338 VMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 368 (528)
Q Consensus 338 ~~~~~~nwk~~vEN~lD~~H~~~vH~--~t~~~ 368 (528)
...+++|||+.+||++|.||++.+|. .||+.
T Consensus 5 ~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 5 RQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred eeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 46789999999999999999999999 78764
No 57
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.44 E-value=7.4e-07 Score=88.97 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=27.9
Q ss_pred EEEEEecchhhHhhhcCCCCCCCCCCccccc
Q 009689 337 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 367 (528)
Q Consensus 337 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 367 (528)
..+.++||||+.+||+.|.||++++|.+++.
T Consensus 4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 3567899999999999999999999998874
No 58
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.33 E-value=1.4e-06 Score=85.38 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=70.7
Q ss_pred EEEEEEecchhhHhhhcC-CCCCCCCCCccccccCCCCCceeeeecCCCCC------Ccccc--CC-CcceEEcCceeEE
Q 009689 336 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL------QGYWD--PY-PIDMEFRPPCMVL 405 (528)
Q Consensus 336 ~~~~~~~~nwk~~vEN~l-D~~H~~~vH~~t~~~~~~vp~~v~~~~~~~~~------~g~~~--~~-~~~~~f~~P~~vl 405 (528)
...+.++||||+++||++ |.||++++|++++.-...... ........+. .|..- .. .....+.+|++++
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~GHg~~~~~~~~~~~~iFPN~~~ 86 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDA-ADLPPIDLGLQFTAPWHGHGLGFFLDSPQHGTIFPNLSF 86 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhhCCccc-ccCCCCCCCcEEEeCCCCeEEEEeccCcceeeECCcchh
Confidence 456788999999999998 999999999998753221100 0000000010 01000 00 0011223344332
Q ss_pred EEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHH-------HHhhHH
Q 009689 406 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ-------VLNEDL 478 (528)
Q Consensus 406 ~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------V~~ED~ 478 (528)
... . ...+..+.|.++++|.+.+.++... ... +..+..+...... +-.||.
T Consensus 87 ~~~-----------------~-~~~~r~~~P~gp~~tev~~~~~~~k--da~--e~~~~~~~~~~~~~~gpaG~~~~DD~ 144 (206)
T cd08881 87 LPG-----------------Y-FNTLRVWHPRGPDETEVWTWTLVDK--DAP--EEVKDRVRRQYTRTFGPAGTFEQDDG 144 (206)
T ss_pred hhc-----------------c-CceEEEEEeCCCCeEEEEEEEEecC--CCC--HHHHHHHHHHHHhccCCcCCCcCchH
Confidence 110 0 2334556899999999776555432 111 1122222232233 234999
Q ss_pred HHHHHHhhhccC
Q 009689 479 RLVLGQQERMNN 490 (528)
Q Consensus 479 ~ile~qQ~~l~~ 490 (528)
.+++.+|+++..
T Consensus 145 e~~e~~Q~g~~~ 156 (206)
T cd08881 145 ENWEEITRVARG 156 (206)
T ss_pred HHHHHHHHhhcc
Confidence 999999999874
No 59
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.24 E-value=1.7e-06 Score=82.73 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=54.1
Q ss_pred cEEEEeccCCCCCCCCCC-CCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecc-eEEEcCC
Q 009689 244 IPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG-MIWIWPG 314 (528)
Q Consensus 244 ~v~A~~n~CpHRga~Ls~-G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G-~IwV~~~ 314 (528)
++.|+..+|.|.|+.... +....+.+.||+||-+||.+|+.+..|.. ..|..+++....+ .+.+..+
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~----~~L~~~~~~~~~d~~~~~~~~ 168 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAP----RPLPIPPLEYDSDKLYLIGLG 168 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCC----CCcCCceEEEeCCceEEEEec
Confidence 455999999999999988 66678999999999999999998888765 4788888866665 3333333
No 60
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=97.93 E-value=3.1e-05 Score=76.52 Aligned_cols=185 Identities=17% Similarity=0.246 Sum_probs=92.2
Q ss_pred CCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccc---cCCCCC---------ceeeeecCCCCCCccccCCCcc-
Q 009689 329 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYPID- 395 (528)
Q Consensus 329 ~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~---~~~~vp---------~~v~~~~~~~~~~g~~~~~~~~- 395 (528)
.+..+. .....+.+||...+||.+|+.|+ |+|+.+.- ..+..| ..++......+..|..+.+...
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~ 98 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY 98 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence 344333 45678999999999999999998 99996521 111111 1112222223333332211000
Q ss_pred ------------eE--EcCceeEEEEeeecCCCCcCCCCccccc-eeeEEEEEEecCCCCeeeeeeeeeccchhhccCc-
Q 009689 396 ------------ME--FRPPCMVLSTIGISKPGKLEGQNTRQCA-THLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV- 459 (528)
Q Consensus 396 ------------~~--f~~P~~vl~~~g~~~pg~~~g~~~~~~~-~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~- 459 (528)
.. -..|..+...+.+--||-+. +...+ .++.++-..+|++.++.+++-.+... -+..++.
T Consensus 99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~---V~~~P~p~~~qyEwYVPID~~~h~Y~q~l~~~-~~t~ee~~ 174 (240)
T PF11723_consen 99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLM---VENWPYPDFTQYEWYVPIDEDTHRYFQLLGKV-CPTEEERK 174 (240)
T ss_dssp EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEE---EES-SSTTEEEEEEEEEEETTEEEEEEEEEEE--SSHHHHH
T ss_pred eEEEecccCCceeecCCCCCceeEEEeeEeccceee---cccCCCCCeeEEEEEEEecccceeeEeEEeee-cCCHHHHH
Confidence 00 00011111122222222110 01111 45677777799999999987655432 1111111
Q ss_pred ch---HHHHHH-HHHHHHHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHHHcCC
Q 009689 460 PF---MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 519 (528)
Q Consensus 460 p~---~~~~~~-~~~~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al~~g~ 519 (528)
.+ +...|. .....+.+.|..+.|+.|+=...+.. ..+.....|+.++++||...+..+|.
T Consensus 175 ~f~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI 239 (240)
T PF11723_consen 175 AFEYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI 239 (240)
T ss_dssp HHHHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred HHHHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence 11 112222 23456788999999999987655321 22566789999999999999877664
No 61
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.87 E-value=2.7e-05 Score=80.22 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=51.0
Q ss_pred cCCcEEEEeccCCCCCCCCCCC------C----------------------c---cceeEeccCCCeeEcCC--CCcccC
Q 009689 241 KDGIPGCVQNTCAHRACPLHLG------S----------------------V---NEGRIQCPYHGWEYSTD--GKCEKM 287 (528)
Q Consensus 241 ~~G~v~A~~n~CpHRga~Ls~G------~----------------------v---~~~~i~CPYHGW~fd~d--G~~~~i 287 (528)
.++.|.||+.+|+|.||++..- . - ..+.|.||+||-+||.+ |+.+..
T Consensus 174 p~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~G 253 (321)
T TIGR03171 174 PNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTG 253 (321)
T ss_pred CCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCC
Confidence 4577999999999999988321 0 0 12489999999999963 578888
Q ss_pred CCcccccccccccceeee--cceEEEc
Q 009689 288 PSTQLRNVKIKSLPCFEQ--EGMIWIW 312 (528)
Q Consensus 288 P~~~~~~~~l~~~pv~e~--~G~IwV~ 312 (528)
|... .|..++++.. .|.|++-
T Consensus 254 PA~r----pLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 254 PTVR----PLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCcceEEEeCCCCeEEEE
Confidence 8753 6888888665 4778773
No 62
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.05 E-value=0.00046 Score=66.52 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=48.2
Q ss_pred EEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCc
Q 009689 235 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 290 (528)
Q Consensus 235 ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~ 290 (528)
..+-|.++-++.++..+|.|.||-...-.++.|...||+||..||..|+....|..
T Consensus 136 ~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 136 DDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGYYCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred hhhhhccCcceEEEEeeeccccccccccccccCceecccccccccccCceecCCCC
Confidence 34446677789999999999999887777778899999999999999999998864
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.10 E-value=0.027 Score=61.32 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=34.6
Q ss_pred CCCCCCCCCCccceeEeccCCCeeEc-CCCCcccCCCcc
Q 009689 254 HRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTQ 291 (528)
Q Consensus 254 HRga~Ls~G~v~~~~i~CPYHGW~fd-~dG~~~~iP~~~ 291 (528)
|+|+||..|-...++++||+||..|+ .+|....-|+..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999987889999999999999 589998888764
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=87.99 E-value=1.5 Score=39.01 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=23.5
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
.|-+-|..+|.+|. +|-++++.|++|+++...++--.++|++
T Consensus 27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666643 4555555555555555555555544444
No 65
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=75.74 E-value=16 Score=35.11 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=59.3
Q ss_pred CceechhhHHHHhhhccc---cc----------ccccchh--hH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009689 69 GKFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (528)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (528)
-++--||+|.++++.++. |+ ++ +..| +| .+|++|+++.|+-++- +-..+..+++++...++
T Consensus 52 ~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~ 128 (173)
T PRK00294 52 ERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQD 128 (173)
T ss_pred HHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHH
Confidence 357889999999876653 22 22 3333 23 8899999999886652 33445667777777777
Q ss_pred HHHHHHHHHHhh---HHHHHHHHhHHHHHHHHhh
Q 009689 133 DLAQAHRQVHIS---EARVATALDKLAYMEALVN 163 (528)
Q Consensus 133 ~~~~a~~~~~~s---~~rv~~~l~~~~~~~~~~~ 163 (528)
++.++-.+.=-. =......+.|+.+|.++..
T Consensus 129 ~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 129 ELNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 666655442100 1344578889999877665
No 66
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=75.18 E-value=8 Score=38.18 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=49.5
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
.||.+-+ |.+|+.||+++..+..++..|+..+....+.-..+.++.+...+-+|+-|
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 99999999999999999999999999998888899999998877777654
No 67
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=74.28 E-value=12 Score=30.64 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=40.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhHHHHHHHHhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 165 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~-----~rv~~~l~~~~~~~~~~~~~ 165 (528)
+|+..|+++|.+|++||..-.-|-.+.+ +++...-..+|++.++.+.+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek 64 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREK 64 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998877777 47777778888888777754
No 68
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=73.50 E-value=21 Score=34.35 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=49.7
Q ss_pred eechhhHHHHhhhccccccc-------------ccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHHH----HHHH
Q 009689 71 FLDVNQALEVARYDIQYCDW-------------RARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKE----LAEL 130 (528)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l 130 (528)
+--+|+|.++++..+.-..+ .+..| |..||++|++++|+-+ +.+...+..|+.+ +.++
T Consensus 56 s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~~--~~d~~~L~~l~~e~~~~~~~~ 133 (176)
T PRK03578 56 ATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARA--ARDVDALDALLAELRDERRER 133 (176)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHH
Confidence 35899999998877632221 23345 4588999999998642 1122234433333 3344
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 131 QEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 131 ~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
..++.++=..-+- =......+.|+.++.++..
T Consensus 134 ~~~l~~~~~~~~d-~~~A~~~~~kL~y~~kl~~ 165 (176)
T PRK03578 134 YAELGALLDSRGD-DQAAAEAVRQLMFIEKLAQ 165 (176)
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHH
Confidence 4444433221010 1234567788888877654
No 69
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.83 E-value=23 Score=31.22 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhc
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
+...+++|++.+++|+++..++....++.|..-=+...++|++.+.+|.-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46788889999999888888888877777773323368889998888855
No 70
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=70.86 E-value=13 Score=29.09 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhHHHHHHHHhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALVND 164 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~~----rv~~~l~~~~~~~~~~~~ 164 (528)
+|...|+++|.+|.+||.+.+-|-..++. ++...-..+|+|.+..+.
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~~~~~~Rr~IARi~Til~e 56 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQLENPHRIRKVRKDIARIKTVLNE 56 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCcCcHHHHHHHHHHHHHHHHHHc
Confidence 56899999999999999999887777654 555666666666665543
No 71
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=69.38 E-value=14 Score=33.73 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHHHhh
Q 009689 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHIS 144 (528)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~s 144 (528)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-+++.
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L 118 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELL 118 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 449999999999988875555443 4457777888888876655555444
No 72
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.62 E-value=35 Score=27.73 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
+-+||...|.--.+=..=...|+.+++.++.|=++=..+......||+.-+++|--||.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44566555544443333466899999999999999999999999999999998877763
No 73
>PRK09039 hypothetical protein; Validated
Probab=63.58 E-value=31 Score=36.66 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
..+.....+..+.-|..|+.|++.|.+++++....+.-+|+|-...=.|++.|++.++..+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333445555555555555555555555555555555555555544444443
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.03 E-value=55 Score=30.21 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=62.6
Q ss_pred CCceechhhHHHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 009689 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (528)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~r 147 (528)
.+...|+.+.+.++-.=| -+-+.|.-.-+.+.+++-..-+.+.+-...+..|+.+++.++.+++.++.+....++.
T Consensus 27 ~~~~~~~~~vin~i~~Ll----~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLL----QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666653212 1234566677778888888888888888889999999999999999888888888777
Q ss_pred HHHHHhHHHHH
Q 009689 148 VATALDKLAYM 158 (528)
Q Consensus 148 v~~~l~~~~~~ 158 (528)
+.....++...
T Consensus 103 ~~~~~~~~k~~ 113 (151)
T PF11559_consen 103 LKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHH
Confidence 77665555554
No 75
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=59.90 E-value=6.8 Score=34.05 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.6
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009689 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (528)
+++++..+-.++|.+|.|.+..||=|||.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666678899999999999999999975
No 76
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=59.16 E-value=25 Score=36.95 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhc
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
.|.-|++++..|+++|.+...+++++.+++.-+..|-+=|++++++.=+.
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 36779999999999999999999999999999999999999998876554
No 77
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.93 E-value=56 Score=32.96 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=21.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
....+..++.++..+++.+.+-+.++.....++...-.+++.+
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444444444
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.59 E-value=77 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 127 LAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 127 ~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
-+.|++|..+-...-..-+.|+..-|.|+.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555556666665556667788888888764
No 79
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=53.30 E-value=47 Score=26.69 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhHHHHHHHHhhhhhh
Q 009689 117 YKSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALVNDRLL 167 (528)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~----rv~~~l~~~~~~~~~~~~~~l 167 (528)
.+|...|.++|.+|++||..-.-|-...+. ++...-..+|++.++.+.+-+
T Consensus 8 ~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~er~~ 62 (66)
T PRK00306 8 ELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLREREL 62 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999888766544432 455666677777777776543
No 80
>PRK11637 AmiB activator; Provisional
Probab=52.98 E-value=54 Score=35.67 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+..+.++|..+++++.+...++-..++.+...-.++...++.+..++
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443333
No 81
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=52.35 E-value=76 Score=28.84 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=21.9
Q ss_pred CceechhhHHHHhhhcccccccccch
Q 009689 69 GKFLDVNQALEVARYDIQYCDWRARQ 94 (528)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (528)
+.-+|+.++++-+.|||+-+|=+-++
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~ 51 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRS 51 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999966554
No 82
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=52.04 E-value=1e+02 Score=25.01 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAE----LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
-+|++|+.+.++-+. +....+..|++++.. +..++..+=..-... .+...+.|+.|+.++.+
T Consensus 9 e~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~--~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 9 EQMELREELEEAQNS--DDEAELEELKKEIEERIKELIKELAEAFDAKDWE--EAKEALRKLKYLQKLLE 74 (78)
T ss_dssp HHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--HHHHHHHHHHHHHHHHH
Confidence 799999999998653 222344445444443 333344333222222 22366778888777654
No 83
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.70 E-value=81 Score=32.55 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
+...+++|..++++|.++...+.-...|+...-.||++|+.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678889999999999999998888888888888888743
No 84
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=50.23 E-value=57 Score=27.98 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=41.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhhhcccc
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQDRH 171 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~l~~~~ 171 (528)
+|...|+++|.+|++||..-.-|-.+.+ +++...-..+|+|.++.+.+-++...
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~~~~ 65 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELEEKE 65 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999988876655443 46667888889999988877766443
No 85
>PRK14161 heat shock protein GrpE; Provisional
Probab=50.20 E-value=53 Score=31.78 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~ 155 (528)
||...-.|.++++++. +..|++++++|++.|.+++.....-..|........
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888774 567999999999999999999999999988555443
No 86
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=50.20 E-value=9 Score=34.22 Aligned_cols=62 Identities=26% Similarity=0.524 Sum_probs=36.8
Q ss_pred cCceEEEeecCCCCCCCe----eeEEEEEccCCcEEEEeccCCCCCCCCCCCCcc--ceeEeccCCCeeEcCC
Q 009689 215 KNFWFPVAFSTDLKDDTM----EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 281 (528)
Q Consensus 215 ~~~W~~v~~s~eL~~~~~----~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~--~~~i~CPYHGW~fd~d 281 (528)
.++|-++-..+++....+ ..-.++. .|++.-..-.|. |||-.|... .+.+.||+||=--+.|
T Consensus 33 hrFW~~~d~d~~v~~~~~~~~~~~r~i~f--~g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 33 HRFWGPSDVDEEVPSADIAELLRSRTITF--EGEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred ccccCCCCccccccHHHHHHHhheeeEee--cCccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCCC
Confidence 345665554444443322 3444444 455555555675 778777764 4578999999776643
No 87
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=49.92 E-value=48 Score=25.95 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhHHHHHHHHhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALVND 164 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~~----rv~~~l~~~~~~~~~~~~ 164 (528)
+|...|+++|.+|.+||.+-.-|..+.+. ++...-..+|++.++.+.
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~IARi~Tvl~e 57 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATGQLENPHRIREIRRDIARILTVLRE 57 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999998888777543 445555666666666554
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.10 E-value=75 Score=34.11 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=43.7
Q ss_pred hhhcccccccccchhhH-----H-----------HHHHHHHHHHhhChhh-hhcc---chhhHHHHHHHHHHHHHHHHHH
Q 009689 81 ARYDIQYCDWRARQDVL-----T-----------IMLLHEKVVEVLNPLA-RDYK---SIGTMKKELAELQEDLAQAHRQ 140 (528)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~a~~~ 140 (528)
+|-|- .|||++-|-. . +.-+|..+-..|.-+. ||+. -...|..+...+|++|++++.+
T Consensus 211 ~~~d~--kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 211 IRADA--KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred ccCCc--chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46664 8999997754 1 1134444444444432 3433 1234555666667777777777
Q ss_pred HHhhHHHHHHHHhHHHHH
Q 009689 141 VHISEARVATALDKLAYM 158 (528)
Q Consensus 141 ~~~s~~rv~~~l~~~~~~ 158 (528)
-......|+.--..|+++
T Consensus 289 y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 777777777555555554
No 89
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=46.69 E-value=34 Score=32.51 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HhHHHHHHHHhhh
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA--LDKLAYMEALVND 164 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~--l~~~~~~~~~~~~ 164 (528)
...|++||+.|+++++.|..+=-+||+|=.+. -.|+.+|++.++.
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999998888898765433 3577887765553
No 90
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.49 E-value=98 Score=27.39 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
.|.+-..|-+.++.-...|.+......++|..|+.++...+....-.+..|..-..=-.+|+.++.
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455778889999999999999999999999999999999999999999999888887888887765
No 91
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=45.96 E-value=42 Score=30.39 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=33.8
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHh
Q 009689 112 PLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (528)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~ 162 (528)
.|.....+|..|+..|.++++++...+..+...+..|+..|.++..+.+..
T Consensus 63 ~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 63 NLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp -----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567889999999999999999999999999998888888875544
No 92
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=44.86 E-value=45 Score=33.91 Aligned_cols=48 Identities=29% Similarity=0.368 Sum_probs=42.5
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
|-.+|+|+||++..=.-++..|.||-+.+.+++.+-++|+.--+.+++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~ 235 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVE 235 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456889999999999999999999999999999999999888777765
No 93
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=44.54 E-value=42 Score=29.05 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=26.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
.||+.+|+.|++-|||++.++-.+..-=.+|+.
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998887665555554
No 94
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=44.19 E-value=74 Score=24.64 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=31.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVN 163 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~ 163 (528)
+|...|.++|++|.+||.+.+-|-...+ .++...-..+|+|.++.+
T Consensus 5 ~s~~EL~~~l~~lr~eLf~Lr~~~~~~~~~~~~~i~~~Rk~IARi~Tvl~ 54 (55)
T TIGR00012 5 KSKEELAKKLDELKKELFELRFQKATGQLAKPHRIRQVRRDIARLLTVLR 54 (55)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHh
Confidence 6789999999999999998886644433 234455555666655543
No 95
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.50 E-value=1.6e+02 Score=27.18 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
.+..+.+++..+-+-+..-.+.+.++...+..+.+|+++....+....+.-++.+.|...
T Consensus 81 ~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~ 140 (151)
T PF11559_consen 81 QLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKER 140 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555566666667777777777777776666666666666653
No 96
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=43.33 E-value=1.2e+02 Score=29.10 Aligned_cols=88 Identities=22% Similarity=0.330 Sum_probs=49.0
Q ss_pred echhhHHHHhhhccc---cc-cc----------ccchhh--H-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHH----
Q 009689 72 LDVNQALEVARYDIQ---YC-DW----------RARQDV--L-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAEL---- 130 (528)
Q Consensus 72 ~~~~~~~~~~~~~~~---~~-~~----------~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 130 (528)
--||+|..+++..+. |+ .- .+..|. | -+|+++++|+|+ .-+++...+..|++++...
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHH
Confidence 457888888877762 32 22 233332 2 788999999886 2244555555555554433
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 131 QEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 131 ~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
..++.+|=..-.. ......+.|+-++.++..
T Consensus 131 ~~~l~~~~~~~d~--~~A~~~~~rL~y~~kl~~ 161 (173)
T PRK01773 131 LTELSTALNSQQW--QQASQINDRLRFIKKLII 161 (173)
T ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Confidence 3333333222112 344467778888776654
No 97
>PRK04654 sec-independent translocase; Provisional
Probab=43.20 E-value=78 Score=31.50 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 009689 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~ 151 (528)
|-.+.+-+-.+.+.+.||.+ ...||++|..+++++..+..++..+...+.++
T Consensus 36 irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 36 VRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555667778888888887 67888888888888888888888777666643
No 98
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.03 E-value=67 Score=25.26 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=30.7
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
|.=|.+.+=-.+++|+|+|+.+|.+++.+ +.++.+++=.|.++|-
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~-----------i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEK-----------IEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 34455555556788999998888887765 4455677777777664
No 99
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.98 E-value=1.4e+02 Score=27.85 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=37.8
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
|+-+.+++..|++++...+..|.+-..++...++.+...-..+.+.++-.+
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~ 86 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAH 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334567788888888888888888888888888888777666666655443
No 100
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=41.61 E-value=56 Score=29.15 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=35.0
Q ss_pred HHHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHh
Q 009689 103 HEKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (528)
Q Consensus 103 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~ 162 (528)
.-.-||||.|.- ==.-.|..+|+++|.|.+|-.+||-+ +..||=+|.+|+
T Consensus 11 epeevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~EmdnmL 64 (127)
T PF15155_consen 11 EPEEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNML 64 (127)
T ss_pred CchhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHHH
Confidence 334578888865 12245889999999999999999865 345555555544
No 101
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=41.15 E-value=29 Score=30.50 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=37.7
Q ss_pred cchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 009689 92 ARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (528)
Q Consensus 92 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 141 (528)
-|.|+. .+.||+-.+ -+|.-.=..-|.+|+.||..+|.||+.++.|+
T Consensus 53 ~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 53 QREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred chhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 377777 556777654 57887888889999999999999999998764
No 102
>PRK09039 hypothetical protein; Validated
Probab=40.85 E-value=1e+02 Score=32.75 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHh-HHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQA-------HRQVHISEARVATALD-KLAYMEAL 161 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a-------~~~~~~s~~rv~~~l~-~~~~~~~~ 161 (528)
|..||+||+.||.+|..+ +.|+...++++..+|. |..+|+.+
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555444 4444444455555552 24444443
No 103
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.95 E-value=86 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=34.9
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
.+..+..++.|++.||.++++...+.-..+..++.--+=..++|++-+.++
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566788888888888888888777777666543244566666666655
No 104
>PRK14156 heat shock protein GrpE; Provisional
Probab=38.27 E-value=96 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 009689 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (528)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~ 154 (528)
.+.|.||..+-+-+.+ +..|+++++.|++.+.++.....+-..|.......
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555555 77899999999999999999999999998855544
No 105
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.59 E-value=1.4e+02 Score=24.71 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009689 121 GTMKKELAELQEDLAQAHRQVHISEARVAT 150 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~ 150 (528)
=+||++|...+.||+.|=||- -..-||-.
T Consensus 25 f~LRk~l~~~rqELs~aLYq~-DAA~RViA 53 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQH-DAACRVIA 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHHHH
Confidence 379999999999999999984 34455543
No 106
>PRK11637 AmiB activator; Provisional
Probab=36.80 E-value=1.3e+02 Score=32.60 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=30.2
Q ss_pred ChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 111 NPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+.+..-...+..++++|..+++++.+...++...++++...-..+..+
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455667777777777777777777777777776554444433
No 107
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.62 E-value=1e+02 Score=30.50 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=11.0
Q ss_pred ccccccccceEEEEEec
Q 009689 23 NTKKSVRGGFRVFALFG 39 (528)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (528)
.-+.|--..++++.++.
T Consensus 35 ~lRsGPg~~y~Iv~~l~ 51 (206)
T PRK10884 35 YVRSGPGDQYRIVGTLN 51 (206)
T ss_pred EEEcCCCCCCceEEEEc
Confidence 33556666778887764
No 108
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.36 E-value=1.3e+02 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.442 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 123 MKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 123 ~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+.++++-|+.++.+...++..++++++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556777777777777777777777766
No 109
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.04 E-value=1.2e+02 Score=34.47 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~ 154 (528)
.+.+.++|+.+-|+-|-----+.+.|+++++.|+++|.+|=.+++.++......|.+
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677888888877766666688899999999999988888888877666655544
No 110
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=33.48 E-value=1.5e+02 Score=35.31 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=46.7
Q ss_pred CceechhhHHHHhhhcccccccccchhhH-HHHHHHHHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHH
Q 009689 69 GKFLDVNQALEVARYDIQYCDWRARQDVL-TIMLLHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQ 140 (528)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~a~~~ 140 (528)
-||=|+-+=+|..+.+|. |+- -+..++++|+++=+..-| ..+.+..||.||+-|+.|+++.+..
T Consensus 445 ~K~~di~kQle~~~~s~~--------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777787777765 444 456788888887766655 2345678888999999999888877
No 111
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=32.77 E-value=1.6e+02 Score=32.60 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHhHHHHHHHHhhhhhh
Q 009689 124 KKELAELQEDLAQAHRQVHISEARVAT-------ALDKLAYMEALVNDRLL 167 (528)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~s~~rv~~-------~l~~~~~~~~~~~~~~l 167 (528)
.+.+..++|+|.+|.+++...++++.+ ...++.+||..+..++.
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq~~~~~s 440 (451)
T PRK13723 390 EAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARML 440 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555555443 22336666666665553
No 112
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.51 E-value=2.3e+02 Score=25.62 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=25.6
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+|++|-..-|.-=|.+-+.+.+||+++..++.++.......-...+.+.
T Consensus 42 ~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 42 EAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444444444555556666666666555555555544444444
No 113
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.85 E-value=65 Score=31.67 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 009689 122 TMKKELAELQEDLAQAHRQVHIS 144 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s 144 (528)
.||+||++|.++|+++.+....+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999887763
No 114
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.82 E-value=1.2e+02 Score=27.91 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
...+++|+.++++++++-+..+..-+..|+.--.|+.+||+
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777777777777777777777777777777664
No 115
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.17 E-value=84 Score=33.27 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
+..+..+|+.|+.++.++-.+....+..+..+-.|+..
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444444555555555444444444444444344433
No 116
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=31.15 E-value=1.9e+02 Score=23.55 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=32.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVND 164 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~ 164 (528)
+|+..|+++|.+|++||-.-+-|-...+ +++...-..+|++.++.+.
T Consensus 12 ls~~eL~~~l~elk~elf~LRfq~atgql~n~~~ir~~RrdIARikTil~e 62 (67)
T CHL00154 12 LTDSEISEEIIKTKKELFDLRLKKATRQNFKPHLFKHKKHRLAQLLTLLSS 62 (67)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999887776544332 4555556666666665554
No 117
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.73 E-value=1.8e+02 Score=23.84 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhc
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
..+..+..+++.++.++.+...+.-..+..++ .|+...++|++-+++|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~lgM 73 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhcCC
Confidence 34556777777777777776666665555555 555677777777766633
No 118
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=30.35 E-value=75 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~ 151 (528)
+...|+.|+...++++.++..+....+.|...-
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555543
No 119
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.90 E-value=2.5e+02 Score=28.19 Aligned_cols=66 Identities=23% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
.+|+++.+.=+|.--=.-.|+.++++|..+...++++..+-+.+|.++.........+++-....|
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777633333489999999999999999999999999999877777766654444333
No 120
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.78 E-value=3.5e+02 Score=28.29 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=3.1
Q ss_pred cccccc
Q 009689 23 NTKKSV 28 (528)
Q Consensus 23 ~~~~~~ 28 (528)
..+||+
T Consensus 29 LksKGL 34 (300)
T KOG2629|consen 29 LKSKGL 34 (300)
T ss_pred HHhcCC
Confidence 344565
No 121
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.38 E-value=1.4e+02 Score=30.94 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=29.3
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q 009689 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHI 143 (528)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (528)
....+..+-....++...+|++|-+.|.+|+++...+...
T Consensus 52 ~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 52 NRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777788888889999999888877555443
No 122
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.08 E-value=1.4e+02 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHh
Q 009689 117 YKSIGTMKKELAELQEDLAQAHRQVHI 143 (528)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (528)
..||..|..-++-|+.|++++...+..
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888777665443
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=28.67 E-value=3.1e+02 Score=27.53 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 009689 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (528)
+..+.+++...-..+.+-.+.+...|++++++++++......+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555554444444433
No 124
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=27.95 E-value=97 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 137 (528)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHH
Confidence 789999999999999999988 999999999999988754
No 125
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=27.06 E-value=2.9e+02 Score=26.34 Aligned_cols=90 Identities=13% Similarity=0.292 Sum_probs=48.1
Q ss_pred ceechhhHHHHhhhccccccc-------------ccchh--h-HHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHHH
Q 009689 70 KFLDVNQALEVARYDIQYCDW-------------RARQD--V-LTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQE 132 (528)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 132 (528)
++--||+|.++++-++.-..+ .+..| . ..+|++|++++++-+. .+ ...+..|++++....+
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~~ 127 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQS--KDPEAALESFIKRVKKMFK 127 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhccc--cCHHHHHHHHHHHHHHHHH
Confidence 567799999998866532111 11112 2 2788999999877432 11 1224444444444333
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 133 ----DLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 133 ----~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
++.++=..-+. ......+.|+.++.++..
T Consensus 128 ~~~~~l~~~~~~~d~--~~A~~~~~~Lky~~kl~~ 160 (171)
T PRK05014 128 TRLQQMVEQLDNEAW--DAAADTVRKLKFLDKLRS 160 (171)
T ss_pred HHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHH
Confidence 33333221111 344466777777776654
No 126
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=26.58 E-value=1.2e+02 Score=33.23 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=29.3
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+..-.++....++-|-.+-..+++|.-+++.+......+++.++|++
T Consensus 180 ~~~~~~l~~~va~aY~~l~~~~~~l~l~~~~~~~~~~~~~~~~~r~~ 226 (488)
T PRK09915 180 AAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAVKAHQSKVA 226 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666666666666666666666655
No 127
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=26.17 E-value=92 Score=36.20 Aligned_cols=50 Identities=34% Similarity=0.462 Sum_probs=42.8
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 110 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
|-.-||-.. -||--.+|.+|.+++|.|-.|||.+|..||..-+|++-|..
T Consensus 573 le~~a~~~~-~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al~~ 622 (714)
T PF04698_consen 573 LEECARQIH-SGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAALSA 622 (714)
T ss_pred HHHhhhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 445566655 46888999999999999999999999999999999998744
No 128
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.02 E-value=2.6e+02 Score=26.70 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
|..-|--+........+++++...|++|+.+-+.++-..++-+..-..++..+
T Consensus 85 vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 85 VISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444344455555555555555555555555555444444443333
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.97 E-value=2.6e+02 Score=29.50 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.4
Q ss_pred hhHHHHhhhcccccc
Q 009689 75 NQALEVARYDIQYCD 89 (528)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (528)
+.-++.|+.|-..++
T Consensus 150 ~~~~~~l~~D~~~L~ 164 (312)
T smart00787 150 DENLEGLKEDYKLLM 164 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 130
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.45 E-value=2.5e+02 Score=25.14 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+++|-.|+..|++++.+.+.....||.|..
T Consensus 3 ~a~~~~q~~~l~~~v~~lRed~r~SEdrsa 32 (112)
T PF07439_consen 3 DAGLHQQLGTLNAEVKELREDIRRSEDRSA 32 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566666666666666666666666654
No 131
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=87 Score=32.37 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=44.9
Q ss_pred ccccccccccccccceE-EEEEecCCCccccccCcceeeeeecCCCCCCCccCCceech
Q 009689 17 YRPAKINTKKSVRGGFR-VFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDV 74 (528)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (528)
|..+.+.-.|-+||||- +|-.||.=|.+..-.-+....+.||++-+..|.+..-+.|.
T Consensus 60 S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl 118 (305)
T KOG1594|consen 60 STKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDL 118 (305)
T ss_pred chhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEEE
Confidence 44477888899999996 68999987777666666667778999999999766666653
No 132
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.78 E-value=1.5e+02 Score=23.68 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~ 151 (528)
--|+...|+-|..+|.+|.++..-.|+|+.++
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788899999999999999999888887653
No 133
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.63 E-value=96 Score=27.68 Aligned_cols=40 Identities=10% Similarity=0.275 Sum_probs=20.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+...|-+++.+|++++..+..+....+..+..-=+++..|
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666655555555555444433333333
No 134
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=24.43 E-value=2.4e+02 Score=26.68 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=28.2
Q ss_pred cccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009689 86 QYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARV 148 (528)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv 148 (528)
.|..||.+..--.+-.+--|||. +..|-.=..-|+.|+..=+.|..++.+|..++---+.++
T Consensus 43 dyr~wr~~ee~rly~~~~~~~v~-~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l 104 (152)
T PF07321_consen 43 DYRQWRQREEERLYAEIQGKVVS-LKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQAL 104 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777665544444334332 122222223344455444445555555544444433333
No 135
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.89 E-value=1.5e+02 Score=29.68 Aligned_cols=53 Identities=25% Similarity=0.274 Sum_probs=41.8
Q ss_pred hhhhhc-cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhh
Q 009689 112 PLARDY-KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (528)
Q Consensus 112 ~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~ 164 (528)
.|||+- ..+-.|.+++.+++.++.+++.++--.+..+...-.|+++++...+.
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345543 23567889999999999999999999999999888888888765553
No 136
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=23.87 E-value=3.1e+02 Score=26.07 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=47.6
Q ss_pred eechhhHHHHhhhcc---ccc---------c--cccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHHHHH----H
Q 009689 71 FLDVNQALEVARYDI---QYC---------D--WRARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA----E 129 (528)
Q Consensus 71 ~~~~~~~~~~~~~~~---~~~---------~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 129 (528)
+--+|+|.++++.++ .|+ + -.+..| |..+|+++++++|.-++ ..+..|++++. +
T Consensus 50 s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~rE~le~~~~~-----~~L~~l~~~~~~~~~~ 124 (166)
T PRK01356 50 ASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILF-----SDLEKIKNKYELMYKN 124 (166)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHH
Confidence 457888888877554 231 1 224444 33788999888766322 22444544443 4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 130 LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 130 l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
+.+++.+|=..-.. ......+.||.++.++.+
T Consensus 125 ~~~~l~~~f~~~d~--~~A~~~~~~L~y~~kl~~ 156 (166)
T PRK01356 125 EIDSLKQAFEEQNL--SDATIKTSKLKYIGTLLN 156 (166)
T ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Confidence 44444444322122 344467788888877665
No 137
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=1.7e+02 Score=29.92 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
.|++++-.+|+++.+-.+++--.|.++.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 138
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.84 E-value=2.5e+02 Score=34.79 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhChhhhh----ccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH----HHhhhhhhccc
Q 009689 99 IMLLHEKVVEVLNPLARD----YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME----ALVNDRLLQDR 170 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~----~~~~~~~l~~~ 170 (528)
+...-+.|+|.|-.--+- .++|.-.-..+...|+-|+++++....+|+-++.+=+++.+|| +|.+.++..+.
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 334445677777543221 1223333345556677888888888889998888878887774 44455554443
Q ss_pred c
Q 009689 171 H 171 (528)
Q Consensus 171 ~ 171 (528)
.
T Consensus 1641 ~ 1641 (1758)
T KOG0994|consen 1641 E 1641 (1758)
T ss_pred H
Confidence 3
No 139
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.39 E-value=3.7e+02 Score=28.29 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHH-------------------------HHHHHHHHHHHHHHHhhHHHHHHHH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKEL-------------------------AELQEDLAQAHRQVHISEARVATAL 152 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~a~~~~~~s~~rv~~~l 152 (528)
+|-.+.+.+.|--..++-=.+.|..|+++| +..+++++++-.++...+.|++++.
T Consensus 75 ~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~ 154 (301)
T PF06120_consen 75 NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQ 154 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhh
Q 009689 153 DKLAYMEALVND 164 (528)
Q Consensus 153 ~~~~~~~~~~~~ 164 (528)
+|++.+..++++
T Consensus 155 ~k~~~~q~~l~~ 166 (301)
T PF06120_consen 155 SKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHH
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.37 E-value=3.4e+02 Score=25.18 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred ccccchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHhHHHHH
Q 009689 89 DWRARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA--TALDKLAYM 158 (528)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~--~~l~~~~~~ 158 (528)
.|-+|.|.+ -+-.+...-.+.=+.+.-=.+=+..|..+|..++++|..|...+.-++.+++ .+|+|.-++
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~ 84 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHH
No 141
>PRK10869 recombination and repair protein; Provisional
Probab=23.20 E-value=1.9e+02 Score=32.74 Aligned_cols=61 Identities=10% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH-HHHHHHhhhhh
Q 009689 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL-AYMEALVNDRL 166 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~-~~~~~~~~~~~ 166 (528)
|.+-++.+..|...+....+.++.|++++.+++.++...-..+|....+. ..|++.++..|
T Consensus 322 ~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L 383 (553)
T PRK10869 322 LPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESM 383 (553)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666666677777777777766666666555553 34455555554
No 142
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=23.20 E-value=1.2e+02 Score=26.64 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009689 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (528)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (528)
++++.|.|+.+.||--.|=+- |.=||+-|--||.++.....
T Consensus 42 ~~EeF~~~Lq~~lns~pqP~l-vPFLK~~lp~Lr~~l~~~~~ 82 (96)
T PF07531_consen 42 EAEEFTSKLQEELNSSPQPYL-VPFLKKSLPALRQELPNCAR 82 (96)
T ss_dssp -HHHHHHHHHHHCTSS--TTH-HHHHHHHHHHHHHCHCHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-HHHHHHhHHHHHHHHHHHHH
Confidence 889999999999999999888 89999999999999876543
No 143
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.01 E-value=1.1e+02 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=24.5
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009689 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 139 (528)
..+|.+--|++=.+.+||+.+++|+|..+|..
T Consensus 62 ~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 62 TILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677788999999999999888764
No 144
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=22.65 E-value=1.9e+02 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHH-----------------HHHHHHhhHHHHHHHHhHHHHH
Q 009689 120 IGTMKKELAELQEDLAQ-----------------AHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~-----------------a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
|.|||..|.++.++|+. +|.-+|-+.+-|-+.|....+|
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdel 204 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDEL 204 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888875 4555677777777777777776
No 145
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.60 E-value=2e+02 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVAT 150 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~~ 150 (528)
.|++++++|++.|.++.....+-..|+..
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555553
No 146
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.21 E-value=1.2e+02 Score=23.71 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=33.5
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (528)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456788888888888888899998888888888887766654
No 147
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.05 E-value=4.5e+02 Score=27.45 Aligned_cols=84 Identities=29% Similarity=0.371 Sum_probs=53.5
Q ss_pred ccceEEEEEecCCCccccccCcceeeeeecCCCCCCCccCCceechhhHHHHhhhcccccccccchhhHHHHHHHHHHHH
Q 009689 29 RGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVE 108 (528)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (528)
.++-+-|..-||--|. -|.---+||-.=|--|| +|-.|-.|.-|
T Consensus 36 ~rr~~rY~~C~dNHGi-------------------kPP~PEQYLTPLQQKEV-----------------~iRHLkakLke 79 (305)
T PF15290_consen 36 MRRSGRYMSCGDNHGI-------------------KPPNPEQYLTPLQQKEV-----------------CIRHLKAKLKE 79 (305)
T ss_pred CCCCCceeecccCCCC-------------------CCCCHHHhcChHHHHHH-----------------HHHHHHHHHHH
Confidence 4455556677765443 23334567776665565 45555555555
Q ss_pred hhChhh-hhccchhhHHHHHHHHHHHHHH-----HHHHHHhhHHHHH
Q 009689 109 VLNPLA-RDYKSIGTMKKELAELQEDLAQ-----AHRQVHISEARVA 149 (528)
Q Consensus 109 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-----a~~~~~~s~~rv~ 149 (528)
.-|.|- ||.. |..||.||+-|||+--+ -..|+.+-|||-+
T Consensus 80 s~~~l~dRetE-I~eLksQL~RMrEDWIEEECHRVEAQLALKEARkE 125 (305)
T PF15290_consen 80 SENRLHDRETE-IDELKSQLARMREDWIEEECHRVEAQLALKEARKE 125 (305)
T ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 6665 99999999999987543 3467777777755
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.78 E-value=2.9e+02 Score=29.07 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=3.3
Q ss_pred hcccccc
Q 009689 83 YDIQYCD 89 (528)
Q Consensus 83 ~~~~~~~ 89 (528)
.+|+-||
T Consensus 196 ~e~~~~d 202 (312)
T smart00787 196 DELEDCD 202 (312)
T ss_pred HHHHhCC
Confidence 3445555
No 149
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.69 E-value=3.5e+02 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHHHhhChh-hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 102 LHEKVVEVLNPL-ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 102 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+|+-+-.+=+|. +-++. +..|+++|......++++-.+-+..+.++.+.-.+...+
T Consensus 15 ~n~~~dk~EDP~~~l~q~-irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 15 LNALLDKAEDPEKMIRLI-IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555677 44444 788888888888888888777777777777555555544
No 150
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.57 E-value=65 Score=29.74 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=25.1
Q ss_pred EEeccCCCCCCCCCCCCccceeEeccCCCeeEc
Q 009689 247 CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 279 (528)
Q Consensus 247 A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd 279 (528)
-+...||-=|+||.. .+|.+.||.||-++.
T Consensus 26 ML~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 26 MLAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 345689999999997 688999999997664
No 151
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=21.55 E-value=2e+02 Score=29.06 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=42.9
Q ss_pred hHHHHhhhcccccccccchhhHHHH-HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 009689 76 QALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (528)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 138 (528)
.-+|-+|.+|--++=-+|++.|.|. -+++-+-...-+.+...+.+..|++|=..|+++|++..
T Consensus 76 ~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 76 DCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666667777777888755554 34444555556677777788888888888888877654
No 152
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.48 E-value=3.2e+02 Score=25.02 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
++..+-|||..+.+.|+.|...+.-=..+|.-.|++..++-+...+.+
T Consensus 44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 466677888888888888877766556666666776666655555444
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.47 E-value=4e+02 Score=27.13 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+.+++++++.|-.|++..+...+-.+.-......++..+
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444444333333333
No 154
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=21.34 E-value=2.1e+02 Score=27.23 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
.+..++.+|++++.++.+++.+++--..+|.....++..|.+
T Consensus 23 ~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~ 64 (158)
T PF09486_consen 23 RLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 466777777788888888888888777777777777777744
No 155
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=3e+02 Score=22.58 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+|+..|.++|.+|..||..-..|...-+ .|+.+.-.-+|++.++.+.+-
T Consensus 11 ~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~E~~ 63 (69)
T COG0255 11 KSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLREKE 63 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888876555544332 355555566666666555443
No 156
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.25 E-value=74 Score=30.60 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009689 122 TMKKELAELQEDLAQAHR 139 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~ 139 (528)
.+++|++.|.+||.++..
T Consensus 158 ~~~~ei~~lk~el~~~~~ 175 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEK 175 (192)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555555555433
No 157
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.06 E-value=2.1e+02 Score=27.88 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhccccCCCCCccCCCCCCChh
Q 009689 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQ 187 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ts~~ 187 (528)
+.|...+.-...+..|+.+++.+..++.+...++.-.+.++...-+|+..|..-.+..-.+...+....+.+ ....-.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~--~~~a~~ 165 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS--VSSAMD 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchHH
Q ss_pred hHHHHhccC
Q 009689 188 SLDIVKGKL 196 (528)
Q Consensus 188 ~~~~e~~~i 196 (528)
.|++-.++|
T Consensus 166 ~~er~e~ki 174 (221)
T PF04012_consen 166 SFERMEEKI 174 (221)
T ss_pred HHHHHHHHH
No 158
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.06 E-value=2.4e+02 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=21.0
Q ss_pred HHHHHHHHHH----HHHHHHHhhHHHHHHHHhHHHHH
Q 009689 126 ELAELQEDLA----QAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 126 ~~~~l~~~~~----~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+|..|++.+. ...++.+.++.++..+|.+.++-
T Consensus 62 eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 62 ELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 56667777777777777777664
No 159
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=20.97 E-value=66 Score=29.11 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhChhhhhccchhh----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 009689 100 MLLHEKVVEVLNPLARDYKSIGT----MKKELAELQEDLAQAHRQVHISEARVATALD 153 (528)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~ 153 (528)
..+++.+++.+|.--.||-+.++ +.+.+..|+..+.+.+.++..+.+.+....+
T Consensus 40 ~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~ 97 (133)
T PF06148_consen 40 KELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQE 97 (133)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHS-STTHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888877665 5666667777777777777666665554433
No 160
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=20.81 E-value=4.5e+02 Score=26.14 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHHHHHhhChhhhhcc----chh-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 009689 93 RQDVLTIMLLHEKVVEVLNPLARDYK----SIG-TMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (528)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~ 155 (528)
|-|+|.+....++|.......|.=.. +|. .++.+...+=+...+|=.++|..-..+.+.+.+.
T Consensus 79 R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~~ 146 (217)
T COG1392 79 REDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLESA 146 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 78999999999999999888775443 333 8999999999999999999998888887766663
No 161
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.68 E-value=2.7e+02 Score=30.24 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=47.4
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhccccCCC-CCccCCCCCCChhh
Q 009689 110 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSG-TDQTCASPSTSKQS 188 (528)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ts~~~ 188 (528)
|-+-|.=+|--..|.|||++.++|+++...|+.++-+.+.+-....++ ..--.+. .+.+|-.+.-+|+.
T Consensus 348 LEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq----------~~~p~~r~~~p~pnp~pidp~~ 417 (442)
T PF06637_consen 348 LEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQ----------PMTPGPRPVGPVPNPPPIDPAS 417 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC----------CCCCCCCCCCCCCCCCCCChHH
Confidence 344444455556788889999999998888888876555544433332 1111111 12333445677888
Q ss_pred HHHHhccCCC
Q 009689 189 LDIVKGKLPR 198 (528)
Q Consensus 189 ~~~e~~~if~ 198 (528)
++.=+++|.-
T Consensus 418 leefkrrile 427 (442)
T PF06637_consen 418 LEEFKRRILE 427 (442)
T ss_pred HHHHHHHHHh
Confidence 8877777753
No 162
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.51 E-value=6.3e+02 Score=24.38 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=4.5
Q ss_pred CCCCCCcc
Q 009689 196 LPRKSLNV 203 (528)
Q Consensus 196 if~~s~~~ 203 (528)
..++.|..
T Consensus 121 ~~~k~wr~ 128 (169)
T PRK01919 121 HKRKNWRV 128 (169)
T ss_pred Cccccccc
Confidence 45556664
No 163
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.44 E-value=4.3e+02 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHhHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQV-----HISEARVATALDKLAY 157 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~-----~~s~~rv~~~l~~~~~ 157 (528)
++|++++.||+-|.+.-.+- |+||.+-+.-.+--.|
T Consensus 289 ~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery 329 (552)
T KOG2129|consen 289 DHREENERLQRKLINELERREALCRMLSESESSLEMDEERY 329 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46677777777766554433 5566555544443333
No 164
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=20.42 E-value=5.8e+02 Score=22.49 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=44.8
Q ss_pred eeEEEEEccCCcEEEEeccCCCCCCCCCCCC---ccceeEeccCCCeeEcC------CCCcccCCCccccccccccccee
Q 009689 233 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS---VNEGRIQCPYHGWEYST------DGKCEKMPSTQLRNVKIKSLPCF 303 (528)
Q Consensus 233 ~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~---v~~~~i~CPYHGW~fd~------dG~~~~iP~~~~~~~~l~~~pv~ 303 (528)
.++++++..+|.+.+..|.|- +..+. ..++.++|-.=|-+|.. .|-|-.+| .+-.
T Consensus 19 vrff~i~~~dg~~~va~daCe-----iC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P-----------~~~~ 82 (102)
T PF10080_consen 19 VRFFAIKKPDGSYRVAFDACE-----ICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIP-----------LPYT 82 (102)
T ss_pred EEEEEEECCCCCEEEEEEecc-----ccCCCceEEECCEEEEecCCCEEehhhcccccCCCCccC-----------CceE
Confidence 788889999999999998884 22332 25789999999999874 34443333 1445
Q ss_pred eecceEEEcC
Q 009689 304 EQEGMIWIWP 313 (528)
Q Consensus 304 e~~G~IwV~~ 313 (528)
..+|.|-|..
T Consensus 83 ~~~~~I~I~~ 92 (102)
T PF10080_consen 83 VDGGNIIIDQ 92 (102)
T ss_pred ecCCeEEEeH
Confidence 5677777743
No 165
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.10 E-value=3.6e+02 Score=26.86 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
++.+|+.-+-..|.|--.-+..+...+..|+++|....+.+...|++.+.+-.|...+++
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~ 176 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE 176 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 444444444455555444456666666666666666666666666666655555544443
No 166
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=20.06 E-value=54 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=13.1
Q ss_pred cceeEeccCCCeeEcCC
Q 009689 265 NEGRIQCPYHGWEYSTD 281 (528)
Q Consensus 265 ~~~~i~CPYHGW~fd~d 281 (528)
..-.|+||-||-.....
T Consensus 29 ~PvtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 29 TPVTIRCPKHGNFTCST 45 (60)
T ss_pred CceEEECCCCCcEEecc
Confidence 44589999999877644
Done!