Query 009689
Match_columns 528
No_of_seqs 317 out of 2119
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 4.1E-50 1.4E-54 417.9 18.9 293 212-516 3-335 (349)
2 3n0q_A Putative aromatic-ring 100.0 3.1E-42 1.1E-46 365.6 24.0 305 175-516 16-398 (409)
3 3vca_A Ring-hydroxylating diox 100.0 7.7E-42 2.6E-46 362.9 21.8 302 176-514 19-398 (412)
4 2zyl_A Possible oxidoreductase 100.0 1.9E-41 6.5E-46 357.2 22.2 293 211-518 19-339 (386)
5 1z01_A 2-OXO-1,2-dihydroquinol 100.0 2.1E-41 7.1E-46 363.0 22.8 303 184-521 25-410 (446)
6 2de6_A Terminal oxygenase comp 100.0 3.9E-41 1.3E-45 355.1 16.3 291 212-521 23-378 (392)
7 3gkq_A Terminal oxygenase comp 100.0 1.8E-36 6.2E-41 317.1 19.8 293 212-522 26-380 (389)
8 3gcf_A Terminal oxygenase comp 100.0 2.7E-36 9.1E-41 316.6 20.2 294 212-524 29-385 (394)
9 2bmo_A Oxygenase-alpha NBDO; n 100.0 5.7E-36 2E-40 320.7 16.7 173 177-368 12-217 (447)
10 2gbw_A Biphenyl 2,3-dioxygenas 100.0 2.2E-35 7.5E-40 316.9 20.4 173 176-367 13-217 (454)
11 2b1x_A Naphthalene dioxygenase 100.0 2.2E-35 7.6E-40 318.1 20.1 174 175-367 20-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 1.2E-34 4.3E-39 311.1 11.6 174 175-367 32-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 3.2E-34 1.1E-38 308.4 14.2 172 176-366 31-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 3.7E-24 1.3E-28 184.6 10.7 93 217-314 3-103 (103)
15 2i7f_A Ferredoxin component of 99.9 2.4E-24 8.3E-29 187.4 9.2 95 217-316 3-106 (108)
16 1fqt_A Rieske-type ferredoxin 99.9 7.7E-24 2.6E-28 185.6 11.6 95 217-316 5-108 (112)
17 2de6_D Ferredoxin component of 99.9 3.9E-24 1.3E-28 188.6 8.0 97 215-316 2-107 (115)
18 1vm9_A Toluene-4-monooxygenase 99.9 1.2E-23 4E-28 184.0 10.8 96 217-317 1-105 (111)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 6.3E-24 2.1E-28 184.2 8.5 94 217-315 1-102 (106)
20 2jo6_A Nitrite reductase [NAD( 99.9 2.5E-23 8.5E-28 182.4 10.2 93 217-314 6-112 (113)
21 3c0d_A Putative nitrite reduct 99.9 1.7E-23 6E-28 185.5 9.1 96 216-316 4-112 (119)
22 2jza_A Nitrite reductase [NAD( 99.9 5.2E-23 1.8E-27 185.4 11.7 96 217-317 3-112 (130)
23 3gce_A Ferredoxin component of 99.9 4.1E-23 1.4E-27 183.7 10.2 96 216-316 9-114 (121)
24 4aiv_A Probable nitrite reduct 99.9 3.4E-23 1.2E-27 184.1 8.5 95 215-314 7-116 (119)
25 3d89_A Rieske domain-containin 99.9 2E-23 6.9E-28 193.7 6.3 104 213-317 12-137 (157)
26 1rfs_A Rieske protein; iron-su 99.8 1.2E-19 4.1E-24 165.5 5.5 95 215-314 19-124 (139)
27 1rie_A Rieske iron-sulfur prot 99.8 1E-18 3.5E-23 157.3 10.3 90 217-311 5-128 (129)
28 4aay_B AROB; oxidoreductase, r 99.7 2.4E-18 8.3E-23 162.6 7.8 90 218-312 51-161 (175)
29 1g8k_B Arsenite oxidase; molyb 99.7 3.6E-18 1.2E-22 154.5 8.4 91 217-312 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.6 3.8E-19 1.3E-23 161.0 0.0 78 233-315 40-120 (133)
31 1nyk_A Rieske iron-sulfur prot 99.6 4.5E-16 1.5E-20 145.8 7.7 73 241-318 77-151 (165)
32 3cx5_E Cytochrome B-C1 complex 99.6 8.3E-16 2.8E-20 146.5 9.2 91 215-311 60-184 (185)
33 2qjy_C Ubiquinol-cytochrome C 99.6 1.1E-15 3.6E-20 146.0 9.5 66 242-311 119-186 (187)
34 1pp9_E Ubiquinol-cytochrome C 99.6 1.3E-15 4.3E-20 146.5 9.1 87 221-311 75-195 (196)
35 2nwf_A Ubiquinol-cytochrome C 99.6 1.7E-15 5.8E-20 138.3 8.8 66 242-311 73-140 (141)
36 1vf5_D Rieske iron-sulfur prot 99.6 5.3E-16 1.8E-20 147.0 2.8 76 233-313 87-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 9.7E-16 3.3E-20 148.1 0.4 70 242-315 84-168 (204)
38 3pp5_A BRK1, protein brick1; t 73.3 8.3 0.00029 30.8 6.2 57 88-150 14-70 (73)
39 3uo3_A J-type CO-chaperone JAC 70.8 19 0.00064 33.4 9.2 94 67-163 54-168 (181)
40 1fpo_A HSC20, chaperone protei 70.4 10 0.00035 34.8 7.2 91 69-163 49-159 (171)
41 3bvo_A CO-chaperone protein HS 70.1 12 0.0004 35.6 7.8 88 69-163 91-198 (207)
42 3p8c_E Probable protein brick1 65.9 8.7 0.0003 30.9 4.9 57 88-150 14-70 (75)
43 3hho_A CO-chaperone protein HS 57.4 33 0.0011 31.4 8.1 91 69-163 52-163 (174)
44 3j21_W 50S ribosomal protein L 56.9 23 0.00078 28.1 5.9 51 118-168 9-64 (72)
45 3mq9_A Bone marrow stromal ant 54.2 32 0.0011 35.8 8.4 62 101-162 377-452 (471)
46 3hnw_A Uncharacterized protein 49.8 60 0.002 28.8 8.2 56 108-163 79-134 (138)
47 1uix_A RHO-associated kinase; 42.1 65 0.0022 25.5 6.2 18 121-138 14-31 (71)
48 2yy0_A C-MYC-binding protein; 41.8 37 0.0013 25.3 4.6 30 120-149 21-50 (53)
49 4emc_A Monopolin complex subun 41.2 52 0.0018 30.8 6.5 54 101-154 17-70 (190)
50 2jee_A YIIU; FTSZ, septum, coi 41.1 86 0.0029 25.4 7.0 37 100-136 9-45 (81)
51 3m91_A Proteasome-associated A 40.6 89 0.003 23.1 6.4 40 124-163 8-47 (51)
52 3ghg_A Fibrinogen alpha chain; 39.5 48 0.0016 35.7 6.7 44 122-165 114-157 (562)
53 1r73_A TM1492, 50S ribosomal p 39.1 70 0.0024 24.7 6.0 50 118-167 9-62 (66)
54 2l5g_A GPS2 protein, G protein 38.3 31 0.0011 23.9 3.3 29 114-142 4-32 (38)
55 2zkr_v 60S ribosomal protein L 38.0 58 0.002 28.4 6.0 51 118-168 12-67 (123)
56 3caz_A BAR protein; thermo-aci 36.8 9.5 0.00033 35.9 0.8 64 50-132 61-126 (294)
57 1vq8_V 50S ribosomal protein L 36.1 1E+02 0.0034 24.2 6.6 49 118-166 12-65 (71)
58 1s1c_X RHO-associated, coiled- 35.7 76 0.0026 25.1 5.7 39 121-160 16-67 (71)
59 3na7_A HP0958; flagellar bioge 35.0 95 0.0032 29.9 7.7 9 267-275 221-229 (256)
60 3azd_A Short alpha-tropomyosin 34.8 18 0.0006 25.1 1.7 26 119-144 5-30 (37)
61 3u1c_A Tropomyosin alpha-1 cha 34.5 1.3E+02 0.0044 25.0 7.4 28 122-149 55-82 (101)
62 3v2d_2 50S ribosomal protein L 34.4 89 0.0031 24.6 6.0 49 118-166 16-68 (72)
63 4a17_U RPL35, 60S ribosomal pr 33.4 1E+02 0.0034 27.0 6.7 49 118-166 13-66 (124)
64 2z5i_A TM, general control pro 33.3 45 0.0015 24.7 3.8 37 119-155 13-49 (52)
65 3a7o_A Autophagy protein 16; c 33.0 1.1E+02 0.0036 24.2 6.0 37 120-156 13-52 (75)
66 3twe_A Alpha4H; unknown functi 32.7 59 0.002 20.3 3.6 21 121-141 4-24 (27)
67 4i0x_B ESAT-6-like protein MAB 32.6 1.5E+02 0.005 24.2 7.5 38 120-157 34-81 (103)
68 4gkw_A Spindle assembly abnorm 32.1 1.5E+02 0.005 26.2 7.5 60 101-160 43-105 (167)
69 3bbo_Z Ribosomal protein L29; 31.7 50 0.0017 30.4 4.7 51 118-168 73-127 (173)
70 2rjz_A PILO protein; structura 31.7 57 0.002 29.0 5.1 44 114-158 11-54 (147)
71 3iz5_c 60S ribosomal protein L 31.2 93 0.0032 27.2 6.1 49 118-166 14-66 (124)
72 2zjr_V 50S ribosomal protein L 30.7 89 0.003 24.2 5.4 50 118-167 9-62 (67)
73 2wuj_A Septum site-determining 30.4 29 0.00099 26.1 2.4 33 105-140 24-56 (57)
74 3he5_B Synzip2; heterodimeric 30.1 1.5E+02 0.0051 21.1 6.4 40 122-161 7-46 (52)
75 3u59_A Tropomyosin beta chain; 30.0 1.3E+02 0.0044 24.9 6.7 37 120-156 46-82 (101)
76 1lwu_C Fibrinogen gamma chain; 29.5 97 0.0033 31.3 6.9 44 120-163 7-50 (323)
77 1ic2_A Tropomyosin alpha chain 29.4 1.3E+02 0.0046 23.8 6.5 36 122-157 38-73 (81)
78 3r8s_Y 50S ribosomal protein L 27.8 56 0.0019 25.0 3.7 46 118-163 9-58 (63)
79 3hnw_A Uncharacterized protein 27.6 94 0.0032 27.5 5.7 33 126-158 90-122 (138)
80 3u59_A Tropomyosin beta chain; 27.5 2E+02 0.0068 23.7 7.4 57 99-158 35-97 (101)
81 1z23_A CRK-associated substrat 27.1 79 0.0027 29.0 5.2 61 72-132 7-103 (163)
82 3uul_A Utrophin; spectrin repe 27.0 1.7E+02 0.0058 23.5 7.0 55 100-154 52-114 (118)
83 3mq7_A Bone marrow stromal ant 26.5 93 0.0032 26.9 5.1 42 106-149 54-95 (121)
84 3u1c_A Tropomyosin alpha-1 cha 26.4 1.6E+02 0.0056 24.4 6.7 40 120-159 46-85 (101)
85 1ic2_A Tropomyosin alpha chain 25.9 2.4E+02 0.0081 22.3 7.4 33 120-152 43-75 (81)
86 2akf_A Coronin-1A; coiled coil 25.6 1.3E+02 0.0045 19.7 4.5 27 121-147 2-28 (32)
87 2h8b_A Insulin-like 3; insulin 25.5 12 0.00041 23.7 -0.4 8 92-99 16-23 (26)
88 3vkg_A Dynein heavy chain, cyt 24.9 1.3E+02 0.0044 39.6 8.3 38 121-158 2010-2047(3245)
89 2xzr_A Immunoglobulin-binding 24.7 3.1E+02 0.01 22.9 8.1 32 129-160 66-97 (114)
90 1c1g_A Tropomyosin; contractIl 24.6 2E+02 0.0067 26.1 7.7 30 120-149 57-86 (284)
91 4fi5_A Nucleoprotein; structur 24.1 2.3E+02 0.008 24.2 7.1 49 119-167 23-90 (113)
92 2w6b_A RHO guanine nucleotide 23.9 1.8E+02 0.0063 21.8 5.6 36 120-155 12-50 (56)
93 2r2v_A GCN4 leucine zipper; co 23.4 82 0.0028 21.4 3.3 25 101-132 5-29 (34)
94 1ek9_A Outer membrane protein 23.3 1.1E+02 0.0038 30.4 6.2 30 126-155 153-182 (428)
95 4dk0_A Putative MACA; alpha-ha 23.0 1E+02 0.0035 30.6 5.7 23 128-150 73-95 (369)
96 2k48_A Nucleoprotein; viral pr 22.8 2.5E+02 0.0087 23.7 7.0 19 148-166 84-102 (107)
97 2xdj_A Uncharacterized protein 22.8 2.4E+02 0.0081 22.8 6.7 41 119-159 21-61 (83)
98 3uun_A Dystrophin; triple heli 22.8 2.6E+02 0.0089 22.3 7.4 53 101-153 53-113 (119)
99 3u5e_h 60S ribosomal protein L 22.6 1.3E+02 0.0043 26.2 5.4 48 118-165 12-61 (120)
100 3fpp_A Macrolide-specific effl 22.3 1.4E+02 0.0046 29.3 6.4 39 124-162 68-106 (341)
101 1yke_B RNA polymerase II holoe 22.0 2.5E+02 0.0084 25.2 7.4 69 89-157 54-124 (151)
102 1ykh_B RNA polymerase II holoe 22.0 2.9E+02 0.0098 24.0 7.7 68 89-156 54-123 (132)
103 3nmd_A CGMP dependent protein 21.6 2E+02 0.0069 22.7 5.9 33 128-160 22-54 (72)
104 3u06_A Protein claret segregat 21.4 1.5E+02 0.005 30.9 6.7 45 121-166 6-50 (412)
105 1oeg_A Apolipoprotein E; siali 21.2 39 0.0013 21.7 1.3 18 120-137 3-20 (26)
106 2lw1_A ABC transporter ATP-bin 21.1 2.5E+02 0.0085 22.5 6.7 22 120-141 58-79 (89)
107 3g80_A Protein B2; RNA-binding 20.7 1.9E+02 0.0065 23.7 5.7 42 99-143 37-78 (97)
108 4etp_A Kinesin-like protein KA 20.6 1.6E+02 0.0055 30.4 6.7 41 120-160 5-45 (403)
109 1kd8_A GABH AIV, GCN4 acid bas 20.5 1.2E+02 0.004 20.8 3.6 28 101-135 5-32 (36)
110 3htk_A Structural maintenance 20.3 2.3E+02 0.008 20.7 5.9 34 125-158 5-38 (60)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=4.1e-50 Score=417.95 Aligned_cols=293 Identities=25% Similarity=0.453 Sum_probs=224.2
Q ss_pred ccccCceEEEeecCCCCCCC-e------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCc
Q 009689 212 TRLKNFWFPVAFSTDLKDDT-M------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 284 (528)
Q Consensus 212 ~~~~~~W~~v~~s~eL~~~~-~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~ 284 (528)
+.+++.||+||+++|| ++. + ++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+|
T Consensus 3 ~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~ 81 (349)
T 3gke_A 3 TFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQC 81 (349)
T ss_dssp CCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCE
T ss_pred cccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCc
Confidence 4678999999999999 553 2 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-cc--cccccccccceeeecceEEEcCCCCC-CC-CCCCCCC--CCCCCeeeeEEEEEEecchhhHhhhcCCCCC
Q 009689 285 EKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLAH 357 (528)
Q Consensus 285 ~~iP~-~~--~~~~~l~~~pv~e~~G~IwV~~~~~~-p~-~~lp~~~--~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H 357 (528)
+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. ..++|... ...++++||||+++||++|+||
T Consensus 82 ~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H 160 (349)
T 3gke_A 82 VHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLGH 160 (349)
T ss_dssp EECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGGG
T ss_pred cccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccccc
Confidence 99995 21 13578999999999999999998754 21 1244442 23567655 4567899999999999999999
Q ss_pred CCCCCccccccCCC--CCceeeeecCCCCC-----------Ccccc------CCC----cceEEcCceeEEEEeeecCCC
Q 009689 358 APFTHTSTFAKGWS--VPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKPG 414 (528)
Q Consensus 358 ~~~vH~~t~~~~~~--vp~~v~~~~~~~~~-----------~g~~~------~~~----~~~~f~~P~~vl~~~g~~~pg 414 (528)
++++|+++++.... ++..++. + ..++ ..++. ... ..++|.+|+++...+++..+|
T Consensus 161 ~~~~H~~~~~~~~~~~~~~~v~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g 238 (349)
T 3gke_A 161 AQYVHRANAQTDAFDRLEREVIV-G-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG 238 (349)
T ss_dssp HHHHTHHHHCCTTGGGCEEEEEE-C-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred chhccchhhcCccccCCCCEEEE-c-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence 99999999986532 1211111 0 0000 00110 001 347888999987777776655
Q ss_pred CcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHH-hhHHHHHHHHhhhccCCC-
Q 009689 415 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA- 492 (528)
Q Consensus 415 ~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~qQ~~l~~g~- 492 (528)
.. .....++++++.|+|+++++|+++|.+++||..++. .+...+..+..+|| +||+.|||+||+++....
T Consensus 239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~---~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~ 310 (349)
T 3gke_A 239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDP---EMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA 310 (349)
T ss_dssp SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCH---HHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCch---hhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence 41 122345677899999999999999999999875432 23345566788899 999999999999987631
Q ss_pred -CCCCCCCcCChHHHHHHHHHHHHH
Q 009689 493 -NVWNLPVGYDKLGVRYRLWRDALE 516 (528)
Q Consensus 493 -~~~~l~~~aD~~~i~yRrwl~al~ 516 (528)
...++++.+|+++++||||++++.
T Consensus 311 ~~~~~~~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 311 NGIRPAMLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp TTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHH
Confidence 234589999999999999998764
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=3.1e-42 Score=365.60 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=217.7
Q ss_pred CCccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CCe-------eeEEEEEccCCcEE
Q 009689 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTM-------EPWVIFRGKDGIPG 246 (528)
Q Consensus 175 ~~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~~-------~~ivl~R~~~G~v~ 246 (528)
....+++..|||++|++|+++||+ +.|++||+++||++ +.. ++++|+|+.+|+++
T Consensus 16 ~~~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~ 78 (409)
T 3n0q_A 16 GHALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIR 78 (409)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred cccCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEE
Confidence 346777889999999999999986 45667999999986 321 99999999999999
Q ss_pred EEeccCCCCCCCCCC-CCccceeEeccCCCeeEcCCCCcccCCCcc----cccccccccceeeecceEEEcCCCCCCCCC
Q 009689 247 CVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 321 (528)
Q Consensus 247 A~~n~CpHRga~Ls~-G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~----~~~~~l~~~pv~e~~G~IwV~~~~~~p~~~ 321 (528)
||.|+|||||++|+. |.++++.|+||||||+||.||+|+++|+.. ..+.+|++|||++++|+|||++++++| +
T Consensus 79 A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~ 156 (409)
T 3n0q_A 79 AFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--D 156 (409)
T ss_dssp EEESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--C
T ss_pred eecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--C
Confidence 999999999999996 888899999999999999999999999753 246789999999999999999987654 3
Q ss_pred CCCCCC----------CCCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCC-------------------
Q 009689 322 IPCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV------------------- 372 (528)
Q Consensus 322 lp~~~~----------~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v------------------- 372 (528)
++++++ ..++.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 157 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (409)
T 3n0q_A 157 FERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHF 236 (409)
T ss_dssp CHHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHH
T ss_pred hHHhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhh
Confidence 443321 123444455677899999999999999999999999886531100
Q ss_pred --------Cc-ee-----ee---ecCC---------CCCCcc---ccC-----CCcceEEcCceeEEEEeeecCCCCcCC
Q 009689 373 --------PS-LV-----KF---LTPA---------SGLQGY---WDP-----YPIDMEFRPPCMVLSTIGISKPGKLEG 418 (528)
Q Consensus 373 --------p~-~v-----~~---~~~~---------~~~~g~---~~~-----~~~~~~f~~P~~vl~~~g~~~pg~~~g 418 (528)
+. .. .+ ..+. .+..++ ... ......+..||+++...
T Consensus 237 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------- 306 (409)
T 3n0q_A 237 DRCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL---------- 306 (409)
T ss_dssp HHHHHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC----------
T ss_pred hhhhccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC----------
Confidence 00 00 00 0000 000000 000 01123455677665432
Q ss_pred CCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCC-CCCC
Q 009689 419 QNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNL 497 (528)
Q Consensus 419 ~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qQ~~l~~g~~-~~~l 497 (528)
.+.+.++.+.|+++++|++.+.++...... ....+-...+..+...|..||..|+|..|+++.++.. .+.+
T Consensus 307 -------pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~ 378 (409)
T 3n0q_A 307 -------SDHSIVFRVTPISPTETEVTTKWLVHKDAV-EGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPY 378 (409)
T ss_dssp -------SSCEEEEEEEEEETTEEEEEEEEEEETTCC-BTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBC
T ss_pred -------CCEEEEEEEEECCCCeEEEEEEEEEcCccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC
Confidence 234556778999999999998877632211 1111101233456788999999999999999998753 3335
Q ss_pred CCcCChHHHHHHHHHH-HHH
Q 009689 498 PVGYDKLGVRYRLWRD-ALE 516 (528)
Q Consensus 498 ~~~aD~~~i~yRrwl~-al~ 516 (528)
+...+.++..|.+|+. ++.
T Consensus 379 s~~~E~~v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 379 SPTQESGVLQFVEWYLSTLK 398 (409)
T ss_dssp CTTTSHHHHHHHHHHHHHHH
T ss_pred CCCccHhHHHHHHHHHHHHH
Confidence 5557899999999965 444
No 3
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=7.7e-42 Score=362.87 Aligned_cols=302 Identities=17% Similarity=0.171 Sum_probs=215.4
Q ss_pred CccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CC-----e--eeEEEEEccCCcEEE
Q 009689 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DT-----M--EPWVIFRGKDGIPGC 247 (528)
Q Consensus 176 ~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~-----~--~~ivl~R~~~G~v~A 247 (528)
...+.+..|||++|++|+++||++ .|++||+++||++ +. + ++++|+|+.+|+++|
T Consensus 19 ~~lp~~~Y~d~~~~~~E~~~if~~-----------------~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 81 (412)
T 3vca_A 19 FSLEQPFYTSPEVYALDLQHIFYK-----------------QWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRA 81 (412)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTTTT-----------------SCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHHhc-----------------cCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEE
Confidence 456777899999999999999864 5667999999985 32 1 999999999999999
Q ss_pred EeccCCCCCCCCC-CCCccceeEeccCCCeeEcCCCCcccCCCcc----cccccccccceeeecceEEEcCCCCCCCCCC
Q 009689 248 VQNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 322 (528)
Q Consensus 248 ~~n~CpHRga~Ls-~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~----~~~~~l~~~pv~e~~G~IwV~~~~~~p~~~l 322 (528)
+.|+|||||++|+ .|.++++.|+||||||+||.||+|+++|+.. ..+.+|++|||++++|+|||++++++| ++
T Consensus 82 ~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l 159 (412)
T 3vca_A 82 FHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DF 159 (412)
T ss_dssp EESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CH
Confidence 9999999999998 7889999999999999999999999999753 246789999999999999999987654 34
Q ss_pred CCCCC----------CCCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccCCCC--------------------
Q 009689 323 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 372 (528)
Q Consensus 323 p~~~~----------~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v-------------------- 372 (528)
+++++ ..++.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 160 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3vca_A 160 QTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHF 239 (412)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHH
T ss_pred HHHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhh
Confidence 43321 123444455677899999999999999999999999876521000
Q ss_pred --------Cc-e-----eee---ecCC---------CCCCcc------ccC--CCcceEEcCceeEEEEeeecCCCCcCC
Q 009689 373 --------PS-L-----VKF---LTPA---------SGLQGY------WDP--YPIDMEFRPPCMVLSTIGISKPGKLEG 418 (528)
Q Consensus 373 --------p~-~-----v~~---~~~~---------~~~~g~------~~~--~~~~~~f~~P~~vl~~~g~~~pg~~~g 418 (528)
+. . ..+ ..+. .+..++ +.. ......+..||+++...
T Consensus 240 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------- 309 (412)
T 3vca_A 240 DRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL---------- 309 (412)
T ss_dssp HHHHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC----------
T ss_pred hhhhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC----------
Confidence 00 0 000 0000 000000 000 01123455777665432
Q ss_pred CCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCC-CCCC
Q 009689 419 QNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNL 497 (528)
Q Consensus 419 ~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qQ~~l~~g~~-~~~l 497 (528)
.+.+.++.+.|+++++|++.+.++.........-..+ ..+..+...|..||+.|+|..|+++.++.. .+.+
T Consensus 310 -------pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~ 381 (412)
T 3vca_A 310 -------PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPY 381 (412)
T ss_dssp -------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBC
T ss_pred -------CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Confidence 2345566789999999999988776322110000112 234456788999999999999999998753 3334
Q ss_pred CCcCChHHHHHHHHHHH
Q 009689 498 PVGYDKLGVRYRLWRDA 514 (528)
Q Consensus 498 ~~~aD~~~i~yRrwl~a 514 (528)
+...+.++..|.+|+.+
T Consensus 382 sp~~E~~v~~F~~w~~~ 398 (412)
T 3vca_A 382 SPGQESGVMQFVDWYAA 398 (412)
T ss_dssp CTTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHH
Confidence 44568999999999653
No 4
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-41 Score=357.20 Aligned_cols=293 Identities=16% Similarity=0.282 Sum_probs=203.8
Q ss_pred cccccCceEEEeecCCCCCCC-e------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCC
Q 009689 211 NTRLKNFWFPVAFSTDLKDDT-M------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 283 (528)
Q Consensus 211 ~~~~~~~W~~v~~s~eL~~~~-~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~ 283 (528)
+..|.+.||+||+++||+++. + ++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 456788999999999999763 2 999999999999999999999999999999998999999999999999999
Q ss_pred cccCCCccc--ccccccccceeeecceEEEcCCCCC-CC---CCCCCCCC--CCCCeeeeEEEEEEe-cchhhHhhhcCC
Q 009689 284 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 354 (528)
Q Consensus 284 ~~~iP~~~~--~~~~l~~~pv~e~~G~IwV~~~~~~-p~---~~lp~~~~--~~~~~~~~~~~~~~~-~nwk~~vEN~lD 354 (528)
|+.+|+... ...++++|||++++|+||||++++. |+ ..+|.+.. ..+|.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998643 2468999999999999999997542 21 12343322 245554445567889 999999999999
Q ss_pred CCCCCCCCccccccC---CCCCceeeee--cCCCCCC--c-cccC--CCcceEEcCceeEEEEeeecCCCCcCCCCcccc
Q 009689 355 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 424 (528)
Q Consensus 355 ~~H~~~vH~~t~~~~---~~vp~~v~~~--~~~~~~~--g-~~~~--~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~ 424 (528)
+||++++|+++.... ........+. .+..... + .+.. ......|..|+.++..++...++.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999764310 0000000110 0000000 0 0000 012245677887665544333321
Q ss_pred ceeeEEEEEEecCCCCeeeeeeeeeccchhhcc--CcchHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCCCCCCCcCC
Q 009689 425 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 502 (528)
Q Consensus 425 ~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~V~~ED~~ile~qQ~~l~~g~~~~~l~~~aD 502 (528)
......++.++|+++++|++++.++.++.+... ........+..+...++.||+.|+++||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 112344566799999999999988765432111 11122223345678899999999998875422 2566789
Q ss_pred hHHHHHHHHHHHHHcC
Q 009689 503 KLGVRYRLWRDALEKG 518 (528)
Q Consensus 503 ~~~i~yRrwl~al~~g 518 (528)
+++++||+|++++-..
T Consensus 324 ~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYVD 339 (386)
T ss_dssp CSHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999876443
No 5
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=2.1e-41 Score=363.02 Aligned_cols=303 Identities=17% Similarity=0.282 Sum_probs=205.7
Q ss_pred CChhhHH--HHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCC
Q 009689 184 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAH 254 (528)
Q Consensus 184 ts~~~~~--~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpH 254 (528)
+||++|+ +|++.+| ++.|++||+++||+++.. ++++|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~if-----------------~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGF-----------------INHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTCB-----------------CSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhhh-----------------hhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 9999999 9999876 467889999999987632 8999999 69999999999999
Q ss_pred CCCCCCCCC--ccceeEeccCCCeeEcC-CCCcccCCCccc----ccccccccceeeecceEEEcCCCCC------CCC-
Q 009689 255 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP------PTA- 320 (528)
Q Consensus 255 Rga~Ls~G~--v~~~~i~CPYHGW~fd~-dG~~~~iP~~~~----~~~~l~~~pv~e~~G~IwV~~~~~~------p~~- 320 (528)
||++|+.|. ++++.|+||||||+||. +|+|+.+|+.+. ...+|++|||++++|+||||+++++ |+.
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999997 46789999999999997 999999987532 2578999999999999999997631 111
Q ss_pred -CCCC-CC---------------C--CCCCeeeeEEEEEEecchhhHhhhcCCCCCCCCCCccccccC---CCCCce---
Q 009689 321 -TIPC-LL---------------P--PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSL--- 375 (528)
Q Consensus 321 -~lp~-~~---------------~--~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~---~~vp~~--- 375 (528)
.+|. +. . ..++... ...++++||||+++||++|+||+ ++|+++++.. ...+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLP 244 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEE
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccc
Confidence 1221 00 0 1344443 34568999999999999999999 9999986521 111100
Q ss_pred -----eeeecCCCCCCcc------------cc--------C----CCcceEEcCceeEEEEeeecCCCCcCCCCccccce
Q 009689 376 -----VKFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCAT 426 (528)
Q Consensus 376 -----v~~~~~~~~~~g~------------~~--------~----~~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~ 426 (528)
........+..+. +. . ....+.+.+|++++... .|. .
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~-----------~ 310 (446)
T 1z01_A 245 TSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE-----------E 310 (446)
T ss_dssp CSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS-----------T
T ss_pred cCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC-----------C
Confidence 0000000000000 00 0 01223345676654321 110 1
Q ss_pred eeEEEEEEecCCCCeeeeeeeeeccchhhccCcchHHHHH----HHH-HHHHHhhHHHHHHHHhhhccCCCC-CCCCCCc
Q 009689 427 HLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLW----RHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVG 500 (528)
Q Consensus 427 ~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~~~~~~----~~~-~~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~ 500 (528)
++.+++.++|+++++|++++.++.++... .....+...+ ... ...|..||+.++|+||+++.++.. ..+++..
T Consensus 311 ~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~ 389 (446)
T 1z01_A 311 HVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVA 389 (446)
T ss_dssp TCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCG
T ss_pred CeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCch
Confidence 23456778999999999987766654311 0111001101 011 124678999999999999876543 3467889
Q ss_pred CChHHHHHHHHHHHHHcCCCC
Q 009689 501 YDKLGVRYRLWRDALEKGAKQ 521 (528)
Q Consensus 501 aD~~~i~yRrwl~al~~g~~~ 521 (528)
+|+++++||||++++..+...
T Consensus 390 ~D~~i~~~Rr~l~~~~~~~~~ 410 (446)
T 1z01_A 390 TDISPITWRKLASRWNRGIAK 410 (446)
T ss_dssp GGHHHHHHHHHHHHHCSCBCC
T ss_pred hhHHHHHHHHHHHHHHhhccC
Confidence 999999999999988766543
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=3.9e-41 Score=355.12 Aligned_cols=291 Identities=20% Similarity=0.320 Sum_probs=195.7
Q ss_pred ccccCceEEEeecCCCCCCC-e------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCc--cceeEeccCCCeeEcC-C
Q 009689 212 TRLKNFWFPVAFSTDLKDDT-M------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYST-D 281 (528)
Q Consensus 212 ~~~~~~W~~v~~s~eL~~~~-~------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v--~~~~i~CPYHGW~fd~-d 281 (528)
..|++.||+||+++||+++. . ++++|+|+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+||. +
T Consensus 23 ~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~ 101 (392)
T 2de6_A 23 LGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED 101 (392)
T ss_dssp TCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTT
T ss_pred hhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCC
Confidence 35678899999999998763 2 99999995 99999999999999999999875 4689999999999997 9
Q ss_pred CCcccCCCccc----ccccccccceeeecceEEEcCCCCCCCCCCCC-CC---CCCCCeeeeEEEEEEecchhhHhhhcC
Q 009689 282 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC-LL---PPSGFEIHAEIVMELPIEHGLLLDNLL 353 (528)
Q Consensus 282 G~~~~iP~~~~----~~~~l~~~pv~e~~G~IwV~~~~~~p~~~lp~-~~---~~~~~~~~~~~~~~~~~nwk~~vEN~l 353 (528)
|+|+.+|+.+. .+.+|++|||++++|+||||+++++++ ++++ +. ...++... ....+++||||+++||++
T Consensus 102 G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~ 179 (392)
T 2de6_A 102 GVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVENGF 179 (392)
T ss_dssp CBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHH
T ss_pred CccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhHhcc
Confidence 99999987542 357899999999999999999763321 2222 21 12456554 446789999999999999
Q ss_pred CCCCCCCCCccccccCC-C--CCc---------eeeeecCCCC--CCcc---ccC------------------------C
Q 009689 354 DLAHAPFTHTSTFAKGW-S--VPS---------LVKFLTPASG--LQGY---WDP------------------------Y 392 (528)
Q Consensus 354 D~~H~~~vH~~t~~~~~-~--vp~---------~v~~~~~~~~--~~g~---~~~------------------------~ 392 (528)
|+||+ ++|+++++... . .+. .......... ..++ +.. .
T Consensus 180 D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~ 258 (392)
T 2de6_A 180 DPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIV 258 (392)
T ss_dssp CGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECSBCC
T ss_pred hhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCCccc
Confidence 99999 99999864310 0 000 0000000000 0000 000 0
Q ss_pred CcceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcc-hHHH---HHHH
Q 009689 393 PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---LWRH 468 (528)
Q Consensus 393 ~~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p-~~~~---~~~~ 468 (528)
+....+.+|+.+... ..|+ ..+.++..++|+++++|++++.+++++.+. .... +... .+..
T Consensus 259 ~~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 323 (392)
T 2de6_A 259 ANDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESKWKP 323 (392)
T ss_dssp CCEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHTHHH
T ss_pred ceeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHHHH
Confidence 112233355543211 0111 013445678999999999888776654321 1110 1100 0111
Q ss_pred -HHHHHHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHHHcCCCC
Q 009689 469 -FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQ 521 (528)
Q Consensus 469 -~~~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al~~g~~~ 521 (528)
....|+.||+.|+|+||+.+.++.. ..+++..+|+++++||||++++..+.+.
T Consensus 324 ~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~~ 378 (392)
T 2de6_A 324 MALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQT 378 (392)
T ss_dssp HTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred hhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhcC
Confidence 1134678999999999998876543 4567889999999999999998876644
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1.8e-36 Score=317.10 Aligned_cols=293 Identities=19% Similarity=0.360 Sum_probs=201.4
Q ss_pred ccccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCC--ccceeEeccCCCeeEcC-C
Q 009689 212 TRLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D 281 (528)
Q Consensus 212 ~~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~--v~~~~i~CPYHGW~fd~-d 281 (528)
..|++.|++||+++||+++.. ++++|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||. |
T Consensus 26 ~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~d 104 (389)
T 3gkq_A 26 LGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDN 104 (389)
T ss_dssp TCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTT
T ss_pred hhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCC
Confidence 345788999999999998632 9999999 69999999999999999999986 46789999999999997 8
Q ss_pred CCcccCCCccc----ccccccccceeeecceEEEcCCCCCCCCCCCCCCC----CCCCeeeeEEEEEEecchhhHhhhcC
Q 009689 282 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNLL 353 (528)
Q Consensus 282 G~~~~iP~~~~----~~~~l~~~pv~e~~G~IwV~~~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~vEN~l 353 (528)
|+|+.+|+.+. ...+|++|||++++|+|||+++++++ .++++.++ ..++.... ..++++||||+++||++
T Consensus 105 G~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~EN~l 182 (389)
T 3gkq_A 105 GKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVENGF 182 (389)
T ss_dssp CBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHHHT
T ss_pred CCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHHhcc
Confidence 99999987542 35789999999999999999975432 22332221 24555443 45789999999999999
Q ss_pred CCCCCCCCCccccccC---CCCCc---------eeeeecCCCCCCccccCC---------------------------Cc
Q 009689 354 DLAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPY---------------------------PI 394 (528)
Q Consensus 354 D~~H~~~vH~~t~~~~---~~vp~---------~v~~~~~~~~~~g~~~~~---------------------------~~ 394 (528)
|+||+ ++|+++++.. ...+. ......+..+..|.++.+ ..
T Consensus 183 D~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (389)
T 3gkq_A 183 DAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKMVAI 261 (389)
T ss_dssp CSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBCCCC
T ss_pred hhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcccce
Confidence 99999 9999987631 11110 111222222333322211 12
Q ss_pred ceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcch---HHHHHHHH-H
Q 009689 395 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRHF-A 470 (528)
Q Consensus 395 ~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~---~~~~~~~~-~ 470 (528)
...+..|++.... .+.. .+++++-..+|+++++++++-.+............| ++..|... .
T Consensus 262 ~~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (389)
T 3gkq_A 262 SISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVELAL 327 (389)
T ss_dssp EEEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTT
T ss_pred eEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence 2344455554332 1111 145667677999999999986665433222111111 11222221 3
Q ss_pred HHHHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHHHcCCCCC
Q 009689 471 EQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQL 522 (528)
Q Consensus 471 ~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al~~g~~~~ 522 (528)
..++++|...-|+.|+=+..+.. ..++....|..+++.||...+..+|.+..
T Consensus 328 ~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~~ 380 (389)
T 3gkq_A 328 NGFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQTR 380 (389)
T ss_dssp TTTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCCC
T ss_pred ccccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCCC
Confidence 56788999999999987765421 22567789999999999999888877553
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=2.7e-36 Score=316.59 Aligned_cols=294 Identities=20% Similarity=0.327 Sum_probs=200.1
Q ss_pred ccccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCC--ccceeEeccCCCeeEcC-C
Q 009689 212 TRLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D 281 (528)
Q Consensus 212 ~~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~--v~~~~i~CPYHGW~fd~-d 281 (528)
..|++.|++||+++||+++.. ++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||. |
T Consensus 29 ~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~d 107 (394)
T 3gcf_A 29 LGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDD 107 (394)
T ss_dssp TCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTT
T ss_pred hhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCC
Confidence 356788999999999998642 9999999 69999999999999999999987 46789999999999997 8
Q ss_pred CCcccCCCccc----ccccccccceeeecceEEEcCCCCCCCCCCCCCCC----CCCCeeeeEEEEEEecchhhHhhhcC
Q 009689 282 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNLL 353 (528)
Q Consensus 282 G~~~~iP~~~~----~~~~l~~~pv~e~~G~IwV~~~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~vEN~l 353 (528)
|+|+.+|+.+. ...+|++|||++++|+|||+++++++ .++++.++ ..++... ....+++||||+++||++
T Consensus 108 G~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~-~~~~~i~~NWK~~~EN~l 185 (394)
T 3gcf_A 108 GRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLL-GIRRTVQSNWRLGVENGF 185 (394)
T ss_dssp CBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHS
T ss_pred CceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEE-eEEEEEecCchhhHhhcc
Confidence 99999987542 35789999999999999999976432 22333221 2345443 346789999999999999
Q ss_pred CCCCCCCCCccccccC---CCCCcee--------eeecCCCCCCccccC-----------------------------CC
Q 009689 354 DLAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDP-----------------------------YP 393 (528)
Q Consensus 354 D~~H~~~vH~~t~~~~---~~vp~~v--------~~~~~~~~~~g~~~~-----------------------------~~ 393 (528)
|+||+ ++|+++++.. ...+..+ ... +.....|.++. .+
T Consensus 186 D~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 263 (394)
T 3gcf_A 186 DTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKKVA 263 (394)
T ss_dssp CSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCBCCC
T ss_pred ccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCcccccc
Confidence 99999 9999988641 1111100 011 11122221110 01
Q ss_pred cceEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeeeeeeeeeccchhhccCcch---HHHHHHHH-
Q 009689 394 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRHF- 469 (528)
Q Consensus 394 ~~~~f~~P~~vl~~~g~~~pg~~~g~~~~~~~~~~~~~~~~~Pvs~~~Tr~~~~~~~~~~~~~~~~p~---~~~~~~~~- 469 (528)
....+..|++.... .+.. .+++++...+|+++++++++-.+............| ++..|...
T Consensus 264 ~~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (394)
T 3gcf_A 264 AQVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRDDA 329 (394)
T ss_dssp SEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHT
T ss_pred eeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHHHh
Confidence 22334445544322 1111 145666677999999999986665433221111111 11122211
Q ss_pred HHHHHhhHHHHHHHHhhhccCCCC-CCCCCCcCChHHHHHHHHHHHHHcCCCCCCC
Q 009689 470 AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 524 (528)
Q Consensus 470 ~~~V~~ED~~ile~qQ~~l~~g~~-~~~l~~~aD~~~i~yRrwl~al~~g~~~~p~ 524 (528)
...++++|...-|+.|+=+..+.. ..+.....|..++++||...+..+|.+..|-
T Consensus 330 ~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~~ 385 (394)
T 3gcf_A 330 LHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAARV 385 (394)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC---
T ss_pred hcccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCCc
Confidence 356788999999999887655421 2256778999999999999999998887764
No 9
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=5.7e-36 Score=320.72 Aligned_cols=173 Identities=20% Similarity=0.318 Sum_probs=142.3
Q ss_pred ccC-CCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CCe-------eeEEEEEccCCcEEE
Q 009689 177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTM-------EPWVIFRGKDGIPGC 247 (528)
Q Consensus 177 ~~~-~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~~-------~~ivl~R~~~G~v~A 247 (528)
.++ ++..|||++|++|+++||+ +.|++||+++||++ +.. ++++|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 456 7889999999999999985 45778999999985 421 889999999999999
Q ss_pred EeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCCCcc--------cccccccccc-eeeecceEEEcCCCCC
Q 009689 248 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 317 (528)
Q Consensus 248 ~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP~~~--------~~~~~l~~~p-v~e~~G~IwV~~~~~~ 317 (528)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.. ..+.+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999875 568999999999999999999999753 2346899999 9999999999998764
Q ss_pred CCCCCCCCCC------------CCCCeee-eEEEEEEecchhhHhhhc-CCCCCCCCCCcccccc
Q 009689 318 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 368 (528)
Q Consensus 318 p~~~lp~~~~------------~~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~~ 368 (528)
| +++++++ ..++.+. ....++++||||+++||+ +|+||++++|+.+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 3 2333321 2245443 245678999999999999 7999999999876653
No 10
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=2.2e-35 Score=316.85 Aligned_cols=173 Identities=18% Similarity=0.324 Sum_probs=142.7
Q ss_pred CccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCC-CCe-------eeEEEEEccCCcEEE
Q 009689 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTM-------EPWVIFRGKDGIPGC 247 (528)
Q Consensus 176 ~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~-~~~-------~~ivl~R~~~G~v~A 247 (528)
...+.+..|||++|++|+++||++ .|++||+++||++ +.. .+++|+|+.+|+++|
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if~~-----------------~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 75 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIFSR-----------------AWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRA 75 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTTT-----------------SCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CccCHHHcCCHHHHHHHHHHHhhc-----------------CcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 467888999999999999999854 5668999999985 421 889999999999999
Q ss_pred EeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCCCccc--------ccccccccceeeecceEEEcCCCCCC
Q 009689 248 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 248 ~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP~~~~--------~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... .+.+|++|||++++|+|||++++++|
T Consensus 76 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 76 FINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp EESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred EeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 99999999999999875 5779999999999999999999997531 24679999999999999999987643
Q ss_pred CCCCCCCCC-------------CCCCeee-eEEEEEEecchhhHhhhc-CCCCCCCCCCccccc
Q 009689 319 TATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 367 (528)
Q Consensus 319 ~~~lp~~~~-------------~~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~ 367 (528)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|+.+++
T Consensus 156 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 --SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp --CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred --CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3333321 1344443 245678999999999999 799999999976654
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2.2e-35 Score=318.15 Aligned_cols=174 Identities=19% Similarity=0.358 Sum_probs=140.9
Q ss_pred CCccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCCC------e--eeEEEEEccCCcEE
Q 009689 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDT------M--EPWVIFRGKDGIPG 246 (528)
Q Consensus 175 ~~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~~------~--~~ivl~R~~~G~v~ 246 (528)
+...+.+..|||++|++|+++||+ +.|++||+++||++++ + ++++|+|+.+|+++
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~ 82 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIR 82 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEE
Confidence 446788899999999999999986 4566799999998642 1 89999999999999
Q ss_pred EEeccCCCCCCCCCCCCcc-ceeEeccCCCeeEcCCCCcccCCCccc--------ccccccccc-eeeecceEEEcCCCC
Q 009689 247 CVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDE 316 (528)
Q Consensus 247 A~~n~CpHRga~Ls~G~v~-~~~i~CPYHGW~fd~dG~~~~iP~~~~--------~~~~l~~~p-v~e~~G~IwV~~~~~ 316 (528)
||.|+|||||++|+.|.+. ++.|+||||||+||.||+|+.+|+.+. .+.+|.++| +++++|+|||+++++
T Consensus 83 a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~ 162 (470)
T 2b1x_A 83 GHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162 (470)
T ss_dssp EEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTT
T ss_pred EEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCC
Confidence 9999999999999998765 479999999999999999999998532 246788885 555799999999876
Q ss_pred CCCCCCCCCCC-------------CCCCeeee-EEEEEEecchhhHhhhc-CCCCCCCCCCccccc
Q 009689 317 PPTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 367 (528)
Q Consensus 317 ~p~~~lp~~~~-------------~~~~~~~~-~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~ 367 (528)
+| +++++++ ..++.... ...++++||||+++||+ +|+||++++|+++++
T Consensus 163 ~~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 163 AD--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp CC--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CC--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 43 2333211 23454433 45678999999999999 999999999998754
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=1.2e-34 Score=311.05 Aligned_cols=174 Identities=19% Similarity=0.309 Sum_probs=144.3
Q ss_pred CCccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCC-C-----e--eeEEEEEccCCcEE
Q 009689 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDD-T-----M--EPWVIFRGKDGIPG 246 (528)
Q Consensus 175 ~~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~-~-----~--~~ivl~R~~~G~v~ 246 (528)
....+.+..|||++|++|+++||++ .|++||+++||+++ . + ++|+|+|+.+|+++
T Consensus 32 ~~~~~~~~Ytd~~~~~~E~~~if~~-----------------~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~ 94 (457)
T 3gzx_A 32 NGKLDARIYADQDLYQLELERVFGR-----------------SWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIK 94 (457)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTTTT-----------------SCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHHhc-----------------CCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEE
Confidence 4567888999999999999999864 56679999999764 2 1 89999999999999
Q ss_pred EEeccCCCCCCCCCCCC-ccceeEeccCCCeeEcCCCCcccCCCcc--------------cccccccccceeeecceEEE
Q 009689 247 CVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWI 311 (528)
Q Consensus 247 A~~n~CpHRga~Ls~G~-v~~~~i~CPYHGW~fd~dG~~~~iP~~~--------------~~~~~l~~~pv~e~~G~IwV 311 (528)
||.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ ..+.+|++|||.+++|+|||
T Consensus 95 A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv 174 (457)
T 3gzx_A 95 VFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFA 174 (457)
T ss_dssp EEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEE
T ss_pred EEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEE
Confidence 99999999999999986 6788999999999999999999999853 12467899999999999999
Q ss_pred cCCCCCCCCCCCCCCCC-------------CCCeee-eEEEEEEecchhhHhhhc-CCCCCCC-CCCccccc
Q 009689 312 WPGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFA 367 (528)
Q Consensus 312 ~~~~~~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~-~vH~~t~~ 367 (528)
|+++++| ++++++++ .++.+. ....+.++||||+++||+ +|+||++ ++|.++++
T Consensus 175 ~~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 175 NWDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp ESCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred ecCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 9987654 34444321 234433 245678999999999999 8999999 99998765
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=3.2e-34 Score=308.43 Aligned_cols=172 Identities=20% Similarity=0.325 Sum_probs=140.0
Q ss_pred CccCCCCCCChhhHHHHhccCCCCCCcccCCCCCccccccCceEEEeecCCCCCC-C-----e--eeEEEEEccCCcEEE
Q 009689 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDD-T-----M--EPWVIFRGKDGIPGC 247 (528)
Q Consensus 176 ~~~~~~~~ts~~~~~~e~~~if~~s~~~~G~~~~~~~~~~~~W~~v~~s~eL~~~-~-----~--~~ivl~R~~~G~v~A 247 (528)
...+.+..|||++|++|+++||+ +.|++||+++||+++ . + .+++|+|+.+|+++|
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a 93 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRV 93 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 46777889999999999999985 456689999999864 2 1 889999999999999
Q ss_pred EeccCCCCCCCCCCCCc-cceeEeccCCCeeEcCCCCcccCCCccc-------ccccccccceeeecceEEEcCCCCCCC
Q 009689 248 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPT 319 (528)
Q Consensus 248 ~~n~CpHRga~Ls~G~v-~~~~i~CPYHGW~fd~dG~~~~iP~~~~-------~~~~l~~~pv~e~~G~IwV~~~~~~p~ 319 (528)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... .+.+|++|+|++++|+|||++++++|
T Consensus 94 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p- 172 (460)
T 1uli_A 94 FLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP- 172 (460)
T ss_dssp EESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC-
T ss_pred EeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC-
Confidence 99999999999998865 5679999999999999999999997531 24679999999999999999987643
Q ss_pred CCCCCCCC-------------CCCCee-eeEEEEEEecchhhHhhhc-CCCCCC-CCCCcccc
Q 009689 320 ATIPCLLP-------------PSGFEI-HAEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 366 (528)
Q Consensus 320 ~~lp~~~~-------------~~~~~~-~~~~~~~~~~nwk~~vEN~-lD~~H~-~~vH~~t~ 366 (528)
+++++++ +.++.+ .....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 -~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 -DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp -CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred -CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 2333221 123333 2345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.90 E-value=3.7e-24 Score=184.60 Aligned_cols=93 Identities=20% Similarity=0.365 Sum_probs=85.9
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 288 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~iP 288 (528)
.|++|+.++||+++.. ++++|+| .+|+++|+.|+|||||++|+.|.+.++.|+||||||+||. ||+|+..|
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P 81 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 81 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 5999999999998742 8999999 7999999999999999999999988899999999999997 99999998
Q ss_pred CcccccccccccceeeecceEEEcCC
Q 009689 289 STQLRNVKIKSLPCFEQEGMIWIWPG 314 (528)
Q Consensus 289 ~~~~~~~~l~~~pv~e~~G~IwV~~~ 314 (528)
.. .+|++||+++++|+|||+++
T Consensus 82 ~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 82 VT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp CC----SCCCEECEEEETTEEEEECC
T ss_pred CC----CCCCEEeEEEECCEEEEEcC
Confidence 75 47999999999999999874
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.90 E-value=2.4e-24 Score=187.42 Aligned_cols=95 Identities=24% Similarity=0.423 Sum_probs=86.1
Q ss_pred ceEEEeecCCCCCCCe-------ee-EEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcccC
Q 009689 217 FWFPVAFSTDLKDDTM-------EP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 287 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~-ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~~i 287 (528)
.|++|+.++||+++.. ++ ++|+|+ +|+++|+.|+|||||++|+.|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999998742 78 999999 999999999999999999999988899999999999995 9999999
Q ss_pred CCcccccccccccceeeecceEEEcCCCC
Q 009689 288 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 288 P~~~~~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
|.. .+|++||+++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 875 4799999999999999998753
No 16
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.90 E-value=7.7e-24 Score=185.56 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=87.1
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCC-CccceeEeccCCCeeEcC-CCCcccC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 287 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G-~v~~~~i~CPYHGW~fd~-dG~~~~i 287 (528)
.|++|+.++||+++.. .+++|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||. ||+|+..
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999998742 89999999 999999999999999999999 888889999999999998 8999999
Q ss_pred CCcccccccccccceeeecceEEEcCCCC
Q 009689 288 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 288 P~~~~~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
|+. .+|++||+++++|+|||++++.
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 874 4799999999999999998653
No 17
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.90 E-value=3.9e-24 Score=188.64 Aligned_cols=97 Identities=23% Similarity=0.508 Sum_probs=87.4
Q ss_pred cCceEEEeecCCCCCCCe-------e-eEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcC-CCCcc
Q 009689 215 KNFWFPVAFSTDLKDDTM-------E-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 285 (528)
Q Consensus 215 ~~~W~~v~~s~eL~~~~~-------~-~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~-dG~~~ 285 (528)
.+.|++|+.++||+++.. . +++|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||. ||+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 367999999999998742 7 8999998 999999999999999999999988899999999999996 99999
Q ss_pred cCCCcccccccccccceeeecceEEEcCCCC
Q 009689 286 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 286 ~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
.+|+. .+|++||+++++|+|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99975 4799999999999999998653
No 18
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.90 E-value=1.2e-23 Score=183.96 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred ceEEEeecCCCCCCCe--------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCC-CCcccC
Q 009689 217 FWFPVAFSTDLKDDTM--------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD-GKCEKM 287 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~--------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~d-G~~~~i 287 (528)
.|++|+.++||+++.. .+++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+ |+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 4999999999998742 5799999999999999999999999999999888999999999999985 99998
Q ss_pred CCcccccccccccceeeecceEEEcCCCCC
Q 009689 288 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 288 P~~~~~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
|.. .+|++||+++++|+|||++++.+
T Consensus 80 p~~----~~L~~~~v~~~~g~v~v~~~~~~ 105 (111)
T 1vm9_A 80 PDD----AALAEYPVEVKGDDIYVSTKGIL 105 (111)
T ss_dssp SSS----CBCCEECEEEETTEEEECCTTCC
T ss_pred CCc----CCcCEEEEEEECCEEEEeccCcC
Confidence 643 58999999999999999997654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.89 E-value=6.3e-24 Score=184.22 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=86.4
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEc-CCCCcccCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 288 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd-~dG~~~~iP 288 (528)
.|++|+.++||+++.. .+++|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+|| .||+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 5999999999999753 8899999 589999999999999999999998889999999999999 599999999
Q ss_pred CcccccccccccceeeecceEEEcCCC
Q 009689 289 STQLRNVKIKSLPCFEQEGMIWIWPGD 315 (528)
Q Consensus 289 ~~~~~~~~l~~~pv~e~~G~IwV~~~~ 315 (528)
+. .+|++||+++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 74 489999999999999999864
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.89 E-value=2.5e-23 Score=182.45 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=84.0
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCC-cEEEEeccCCCCCC-CCCCCCccc---e-eEeccCCCeeEcC-CC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVNE---G-RIQCPYHGWEYST-DG 282 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G-~v~A~~n~CpHRga-~Ls~G~v~~---~-~i~CPYHGW~fd~-dG 282 (528)
.|++|+.++||+++.. .+++|+|..+| +++|+.|+|||||+ +|+.|.+.+ . .|+||||||+||. ||
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999998742 89999999899 69999999999999 799998752 3 8999999999997 99
Q ss_pred CcccCCCcccccccccccceeeecceEEEcCC
Q 009689 283 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 314 (528)
Q Consensus 283 ~~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~ 314 (528)
+|+.+|+ .+|++||+++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999986 57999999999999999874
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.89 E-value=1.7e-23 Score=185.53 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=86.8
Q ss_pred CceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCC-CCCCCCccce----eEeccCCCeeEcC-CC
Q 009689 216 NFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 282 (528)
Q Consensus 216 ~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga-~Ls~G~v~~~----~i~CPYHGW~fd~-dG 282 (528)
..|++|+.++||+++.. .+++|+|+.+|+++|+.|+|||||+ +|+.|.+.++ .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 57999999999998742 8999999999999999999999999 8999987542 8999999999997 99
Q ss_pred CcccCCCcccccccccccceeeecceEEEcCCCC
Q 009689 283 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 283 ~~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
+|+.+|+ .+|++||+++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999986 4799999999999999998764
No 22
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.89 E-value=5.2e-23 Score=185.35 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=85.8
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEccCC-cEEEEeccCCCCCC-CCCCCCcc---c-eeEeccCCCeeEcC-CC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 282 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~~G-~v~A~~n~CpHRga-~Ls~G~v~---~-~~i~CPYHGW~fd~-dG 282 (528)
.|++||.++||+++.. .+++|+|+.+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999998742 89999999788 99999999999999 59999875 2 38999999999997 99
Q ss_pred CcccCCCcccccccccccceeeecceEEEcCCCCC
Q 009689 283 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 283 ~~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
+|+.+|+ .+|++|||++++|+|||++++.+
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCC
Confidence 9999986 57999999999999999997654
No 23
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.88 E-value=4.1e-23 Score=183.73 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=86.6
Q ss_pred CceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCC--CccceeEeccCCCeeEc-CCCCcc
Q 009689 216 NFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCE 285 (528)
Q Consensus 216 ~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G--~v~~~~i~CPYHGW~fd-~dG~~~ 285 (528)
..|++|+.++||+++.. .+++|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+|| .+|+|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 87 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT 87 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEE
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEe
Confidence 35999999999998742 89999996 999999999999999999999 88889999999999999 599999
Q ss_pred cCCCcccccccccccceeeecceEEEcCCCC
Q 009689 286 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 316 (528)
Q Consensus 286 ~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~ 316 (528)
.+|+. .+|++||+++++|.|||+++.+
T Consensus 88 ~~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 88 ALPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp ETTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCCc----CCcceEEEEEECCEEEEEECcc
Confidence 99975 4899999999999999998764
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.88 E-value=3.4e-23 Score=184.13 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=81.5
Q ss_pred cCceEEEeecCCCCCCC-e-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccc-----eeEeccCCCeeEc-C
Q 009689 215 KNFWFPVAFSTDLKDDT-M-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYS-T 280 (528)
Q Consensus 215 ~~~W~~v~~s~eL~~~~-~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~-----~~i~CPYHGW~fd-~ 280 (528)
.+.|++||.++||+++. . ++++|||..+|+++|+.|+|||||++|+.|.+.+ ..|+||||||+|| .
T Consensus 7 ~~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred ccceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 35699999999999874 2 7899999999999999999999999998765432 3599999999999 5
Q ss_pred CCCcccCCCcccccccccccceee-ecceEEEcCC
Q 009689 281 DGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG 314 (528)
Q Consensus 281 dG~~~~iP~~~~~~~~l~~~pv~e-~~G~IwV~~~ 314 (528)
||+|+..|. .++++|||++ .+|+|||.+.
T Consensus 87 tG~~~~~p~-----~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-----VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-----CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-----CccceEEEEEEeCCEEEEecC
Confidence 899999886 3799999974 5899999763
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.88 E-value=2e-23 Score=193.70 Aligned_cols=104 Identities=25% Similarity=0.421 Sum_probs=86.7
Q ss_pred cccCceEEEeecCCCCCCCe-------eeEEEEEccCCcEEEEeccCCCCCCCCCCCCccc----eeEeccCCCeeEcC-
Q 009689 213 RLKNFWFPVAFSTDLKDDTM-------EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST- 280 (528)
Q Consensus 213 ~~~~~W~~v~~s~eL~~~~~-------~~ivl~R~~~G~v~A~~n~CpHRga~Ls~G~v~~----~~i~CPYHGW~fd~- 280 (528)
...+.|++||+++||+++.. ++++|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||.
T Consensus 12 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 12 KKKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp --CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 34678999999999987642 8999999 59999999999999999999998754 68999999999997
Q ss_pred CCCccc--C-CCccc-------ccccccccceeeecceEEEcCCCCC
Q 009689 281 DGKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 317 (528)
Q Consensus 281 dG~~~~--i-P~~~~-------~~~~l~~~pv~e~~G~IwV~~~~~~ 317 (528)
||+|+. + |.... ...+|++|||++++|+|||++++.+
T Consensus 91 tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp TCEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred CcCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 999986 3 64211 1367999999999999999998654
No 26
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.77 E-value=1.2e-19 Score=165.46 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=82.2
Q ss_pred cCceEEEee-cCCCCCCCe--------eeEEEEEccCCcE--EEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCC
Q 009689 215 KNFWFPVAF-STDLKDDTM--------EPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 283 (528)
Q Consensus 215 ~~~W~~v~~-s~eL~~~~~--------~~ivl~R~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~ 283 (528)
...|+.++. .+||+++.. ++++++|+.+|++ +|++|+|||||++|+.|. .++.|+||||||+||.||+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence 456777776 788888742 5678889899999 999999999999999877 4689999999999999999
Q ss_pred cccCCCcccccccccccceeeecceEEEcCC
Q 009689 284 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 314 (528)
Q Consensus 284 ~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~ 314 (528)
|+..|.. ..|++||+++++|.|||.+-
T Consensus 98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 98 VVRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 9999864 47999999999999999763
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.77 E-value=1e-18 Score=157.25 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=79.8
Q ss_pred ceEEEeecCCCCCCCe-------eeEEEEEcc--------------------------CCcEEEEeccCCCCCCCCCCCC
Q 009689 217 FWFPVAFSTDLKDDTM-------EPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 263 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~-------~~ivl~R~~--------------------------~G~v~A~~n~CpHRga~Ls~G~ 263 (528)
.|..+ ..++|+++.. .+++|+|.. +|+++|+.|+|||||++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46667 7789988853 889999863 8999999999999999999998
Q ss_pred ccceeEeccCCCeeEcCCCCcccCCCcccccccccccceee-ecceEEE
Q 009689 264 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 311 (528)
Q Consensus 264 v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e-~~G~IwV 311 (528)
++++.|+||||||+||.+|+|+..|+. ..|..||++. .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888999999999999999999998875 4799999998 8999987
No 28
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.73 E-value=2.4e-18 Score=162.57 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=78.5
Q ss_pred eEEEeecCCCCCCCe---------eeEEEEEc---------cCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEc
Q 009689 218 WFPVAFSTDLKDDTM---------EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 279 (528)
Q Consensus 218 W~~v~~s~eL~~~~~---------~~ivl~R~---------~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd 279 (528)
+..||..+||+++.. .+++|+|. .+|+++|++|+|||||++|+.| .+++.|+||||||+||
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd 129 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFD 129 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEEC
Confidence 347999999998742 37999997 5899999999999999999998 6778999999999999
Q ss_pred C--CCCcccCCCcccccccccccceee-ecceEEEc
Q 009689 280 T--DGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIW 312 (528)
Q Consensus 280 ~--dG~~~~iP~~~~~~~~l~~~pv~e-~~G~IwV~ 312 (528)
. +|+|+..|+. ..|++||+++ .+|.||+-
T Consensus 130 ~~~tG~~~~gPa~----~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 130 PEKGGQQVWGQAT----QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp GGGTTEEEECSCS----SCCCBEEEEECTTSEEEEE
T ss_pred CCCCceEecCCCC----CCcCEEEEEEEcCCEEEEE
Confidence 6 4999999974 4799999998 68999963
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.73 E-value=3.6e-18 Score=154.47 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=79.3
Q ss_pred ceEEEeecCCCCCCCe---------eeEEEEEcc---------CCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeE
Q 009689 217 FWFPVAFSTDLKDDTM---------EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 278 (528)
Q Consensus 217 ~W~~v~~s~eL~~~~~---------~~ivl~R~~---------~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~f 278 (528)
-|+.||..+||+++.. .+++|+|.. +|+++|++|+|||+|++|+.+ ..++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 4889999999998742 479999985 899999999999999999973 457899999999999
Q ss_pred cC--CCCcccCCCcccccccccccceeee--cceEEEc
Q 009689 279 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 312 (528)
Q Consensus 279 d~--dG~~~~iP~~~~~~~~l~~~pv~e~--~G~IwV~ 312 (528)
|. +|+|+..|.. ..|.+|++++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 97 8999999865 47999999988 6789984
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.56 E-value=3.8e-19 Score=160.98 Aligned_cols=78 Identities=19% Similarity=0.413 Sum_probs=70.1
Q ss_pred eeEEEEEccCCc--EEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceee-ecceE
Q 009689 233 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMI 309 (528)
Q Consensus 233 ~~ivl~R~~~G~--v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e-~~G~I 309 (528)
.+.+++|+.+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+.+|+. .+|++||+++ .+|.|
T Consensus 40 ~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~----~~L~~ypv~v~~~g~V 114 (133)
T 3azc_A 40 DPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP----LSLALVKATVTEDDKL 114 (133)
Confidence 566777778999 9999999999999999987 67799999999999999999999874 4799999999 99999
Q ss_pred EEcCCC
Q 009689 310 WIWPGD 315 (528)
Q Consensus 310 wV~~~~ 315 (528)
||.++.
T Consensus 115 ~V~~~~ 120 (133)
T 3azc_A 115 VFTPWT 120 (133)
Confidence 998754
No 31
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.62 E-value=4.5e-16 Score=145.79 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=64.4
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCC-CC-cccCCCcccccccccccceeeecceEEEcCCCCCC
Q 009689 241 KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD-GK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 318 (528)
Q Consensus 241 ~~G~v~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~d-G~-~~~iP~~~~~~~~l~~~pv~e~~G~IwV~~~~~~p 318 (528)
.+| ++||.|+|||||++|+.|.++++.|+||||||+||.+ |. |+..|+. ..|..||+++.+|.|||++++..+
T Consensus 77 ~~g-v~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 77 AEG-VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp BTT-EEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred cCC-EEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 355 9999999999999999988888899999999999974 86 9999864 479999999999999999876543
No 32
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.61 E-value=8.3e-16 Score=146.48 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=75.6
Q ss_pred cCceEEEeecCCCCCCCe-------eeEEEEEcc--------------------------CCcEEEEeccCCCCCCC-CC
Q 009689 215 KNFWFPVAFSTDLKDDTM-------EPWVIFRGK--------------------------DGIPGCVQNTCAHRACP-LH 260 (528)
Q Consensus 215 ~~~W~~v~~s~eL~~~~~-------~~ivl~R~~--------------------------~G~v~A~~n~CpHRga~-Ls 260 (528)
...|+.| ..++|+++.. .+++|+|.. +|+++|+.|+|+|+|+. +.
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3468888 5889988853 899999974 69999999999999995 44
Q ss_pred CCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEEE
Q 009689 261 LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 311 (528)
Q Consensus 261 ~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~IwV 311 (528)
.+ ++.+.|.||||||+||.+|+|+..|.. ..|..+|+...+|.|||
T Consensus 139 ~~-~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EA-GDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EE-TTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CC-CCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 43 356789999999999999999999875 36877888778999987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.61 E-value=1.1e-15 Score=145.99 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=58.0
Q ss_pred CCcEEEEeccCCCCCCCCCCC-CccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeee-cceEEE
Q 009689 242 DGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 311 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls~G-~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~-~G~IwV 311 (528)
+|+++|+.|+|||+|++|+.| .++.+.|.||||||+||.+|+|+..|.. ..|..||++.. +|.|+|
T Consensus 119 ~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 119 AGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp TCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred CCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 799999999999999999983 4444799999999999999999998875 47999999875 689987
No 34
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.60 E-value=1.3e-15 Score=146.47 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=75.8
Q ss_pred EeecCCCCCCCe-------eeEEEEEc--------------------------cCCcEEEEeccCCCCCCCCCCCCccce
Q 009689 221 VAFSTDLKDDTM-------EPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNEG 267 (528)
Q Consensus 221 v~~s~eL~~~~~-------~~ivl~R~--------------------------~~G~v~A~~n~CpHRga~Ls~G~v~~~ 267 (528)
.+..++|+++.. .+++|+|. .+|+++|+.|+|||+|++|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 356777877743 88999986 289999999999999999999988778
Q ss_pred eEeccCCCeeEcCCCCcccCCCcccccccccccceee-ecceEEE
Q 009689 268 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 311 (528)
Q Consensus 268 ~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e-~~G~IwV 311 (528)
.|.||||||+||.+|+++..|+. ..|..||++. .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 99999999999999999999875 4799999988 7899987
No 35
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.59 E-value=1.7e-15 Score=138.35 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCcEEEEeccCCCCCCCCCC-CCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceee-ecceEEE
Q 009689 242 DGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 311 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls~-G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e-~~G~IwV 311 (528)
+|+++|+.|+|||+|++|+. +.++++.|.||||||+||.+|+|+..|+. ..|..||+.. .+|.|+|
T Consensus 73 ~g~~~a~~~~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 73 AGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TSCEEEEECCCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCcEEEEeCcCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 78999999999999999998 77667899999999999999999998875 3799999988 7899987
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.57 E-value=5.3e-16 Score=146.99 Aligned_cols=76 Identities=21% Similarity=0.428 Sum_probs=68.7
Q ss_pred eeEEEEEccCCcE--EEEeccCCCCCCCCCCCCccceeEeccCCCeeEcCCCCcccCCCcccccccccccceeeecceEE
Q 009689 233 EPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 310 (528)
Q Consensus 233 ~~ivl~R~~~G~v--~A~~n~CpHRga~Ls~G~v~~~~i~CPYHGW~fd~dG~~~~iP~~~~~~~~l~~~pv~e~~G~Iw 310 (528)
++++++|+.+|++ +|+.|+|||+|++|+.+. .++.|.||||||+||.+|+|+..|.. ..|..||+++.+|.||
T Consensus 87 ~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~~v~v~~g~v~ 161 (179)
T 1vf5_D 87 DPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP----LSLALCHATVQDDNIV 161 (179)
T ss_dssp SCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC----SCCBCCCCCCSSSSCC
T ss_pred CeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC----CCCCeEEEEEECCEEE
Confidence 5788889999997 999999999999999887 46789999999999999999999864 4799999999999999
Q ss_pred EcC
Q 009689 311 IWP 313 (528)
Q Consensus 311 V~~ 313 (528)
|.+
T Consensus 162 v~~ 164 (179)
T 1vf5_D 162 LTP 164 (179)
T ss_dssp CCC
T ss_pred EEe
Confidence 965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.52 E-value=9.7e-16 Score=148.08 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=59.8
Q ss_pred CCcEEEEeccCCCCCCCCCCCCc-----------cceeEeccCCCeeEcCC--CCcccCCCcccccccccccceeee--c
Q 009689 242 DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD--GKCEKMPSTQLRNVKIKSLPCFEQ--E 306 (528)
Q Consensus 242 ~G~v~A~~n~CpHRga~Ls~G~v-----------~~~~i~CPYHGW~fd~d--G~~~~iP~~~~~~~~l~~~pv~e~--~ 306 (528)
+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+ |+|+..|.. ..|..|++... +
T Consensus 84 ~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~----~~L~~~~v~v~~~~ 159 (204)
T 1jm1_A 84 NGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAP----RPLPIVILDYDSST 159 (204)
T ss_dssp TTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCC----SCCCBEEEEECTTT
T ss_pred CCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCC----CCCCeEeeEEEecC
Confidence 79999999999999999998853 56799999999999986 699998864 36888888766 8
Q ss_pred ceEEEcCCC
Q 009689 307 GMIWIWPGD 315 (528)
Q Consensus 307 G~IwV~~~~ 315 (528)
|.|||....
T Consensus 160 g~v~v~g~~ 168 (204)
T 1jm1_A 160 GDIYAVGTN 168 (204)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEeCC
Confidence 999987533
No 38
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=73.27 E-value=8.3 Score=30.80 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=48.9
Q ss_pred cccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009689 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (528)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~ 150 (528)
-||-.|.=+-.|-.-=.|+++-||..+- .-|..|+.|.+.|.+...++-+.||+|++
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998777777777899999997653 46789999999999999999999999984
No 39
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=70.79 E-value=19 Score=33.39 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=52.4
Q ss_pred cCCceechhhHHHHhh-------hcccc-cccccch------------h-hHHHHHHHHHHHHhhChhhhhccchhhHHH
Q 009689 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVLNPLARDYKSIGTMKK 125 (528)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (528)
..-+|.-+|+|.+++. ||.+- -.....+ + |..+|++|+++.|.=+...-+.- ...+++
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l~~l-~~~~~~ 132 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLL-EKQNKE 132 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHH
Confidence 6778999999999975 45543 2222111 2 33789999999986332221100 112334
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 126 ELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 126 ~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
.+..+.++|.+|=.+-...+ ....+.||.+++++.+
T Consensus 133 ~~~~~~~~l~~~~~~~d~~~--A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 133 RIQDIEAQLGQCYNDKDYAA--AVKLTVELKYWYNLAK 168 (181)
T ss_dssp HHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHHHH
Confidence 44444445555444333322 2356778888777654
No 40
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=70.43 E-value=10 Score=34.84 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=51.4
Q ss_pred CceechhhHHHHhh-------hcccccccccch--------hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009689 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (528)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (528)
-+|--+|+|.+++. ||...--..... +.| .+|++++++.|+-+. .+..++..|++++...++
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 47999999999986 343322222221 244 499999999987542 222335556655555433
Q ss_pred H----HHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 133 D----LAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 133 ~----~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
+ +.+|=..-...+ ....+.|+.++.++.+
T Consensus 127 ~~~~~l~~~~~~~~~~~--A~~~~~kl~y~~kl~~ 159 (171)
T 1fpo_A 127 TRHQLMVEQLDNETWDA--AADTCRKLRFLDKLRS 159 (171)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHH--HHHHHHHHHHHHHHHH
Confidence 3 334433323322 2355667777766553
No 41
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=70.07 E-value=12 Score=35.57 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=51.5
Q ss_pred CceechhhHHHHhh-------hcccccccccc------h--hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009689 69 GKFLDVNQALEVAR-------YDIQYCDWRAR------Q--DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (528)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~------~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (528)
-+|-.+|+|.++++ ||.+.-.+... . +.| .+|++++.+.++=+. ..+..|++++.+.++
T Consensus 91 ~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~ 165 (207)
T 3bvo_A 91 KHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQK 165 (207)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHH
Confidence 36789999999986 44332222211 2 355 499999999986543 225666666666555
Q ss_pred HHH----HHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 133 DLA----QAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 133 ~~~----~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
++. +|=.+-.. ......+.||.++.++.+
T Consensus 166 ~~~~~l~~~~~~~d~--~~A~~~v~kL~y~~kl~~ 198 (207)
T 3bvo_A 166 EFTDNVSSAFEQDDF--EEAKEILTKMRYFSNIEE 198 (207)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHH
Confidence 543 33322222 233466777888766544
No 42
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=65.88 E-value=8.7 Score=30.86 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=48.5
Q ss_pred cccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009689 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (528)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~ 150 (528)
-||-.|.=+-.|-..=.++++-||..+- .-|..|+.|.+.|.+...++-+.||+|+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899998877777777899999998753 45788999999999999999999999974
No 43
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=57.43 E-value=33 Score=31.39 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=51.1
Q ss_pred CceechhhHHHHhh-------hcccccccccch------h---hHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHH---
Q 009689 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ------D---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELA--- 128 (528)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--- 128 (528)
-+|.-+|+|.++++ ||.+-....... | |..+|++++++.++-+. .+ ..++..|++++.
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 57899999999976 444333333222 2 33889999999987432 11 122444444444
Q ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 129 -ELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 129 -~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
++.+++.+|=..-...+| ...+.||-++.++.+
T Consensus 130 ~~~~~~l~~~~~~~d~~~A--~~~~~kL~f~~kl~~ 163 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLAA--ADQIRKLKFIAKLKN 163 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHH
Confidence 344444444443333333 245778888776654
No 44
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.94 E-value=23 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhHHHHHHHHhhhhhhc
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~-----~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-.-+|++.++.+.+-++
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~ 64 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRE 64 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999888877776 56666666777777777765444
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.20 E-value=32 Score=35.79 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=41.8
Q ss_pred HHHHHHHHhhChhhhh---ccchhhHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHhHHHHHHHHh
Q 009689 101 LLHEKVVEVLNPLARD---YKSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYMEALV 162 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~a~~~~~-----------~s~~rv~~~l~~~~~~~~~~ 162 (528)
.+.+++.+.|+....+ ..-...|++||.++|.-++++..|-. ..|+.||+.+.|+.++|.-+
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444333 22234589999999999999887753 35788889888888887644
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.82 E-value=60 Score=28.77 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=37.1
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
+....+..--+-+-.||.+|..+|.++..+..++--.+.++..-..++..||+-.+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344466777777777777777777777777777777777777766444
No 47
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.15 E-value=65 Score=25.51 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009689 121 GTMKKELAELQEDLAQAH 138 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~ 138 (528)
..|.++|..+|++++++.
T Consensus 14 eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 14 EELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777777665
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.75 E-value=37 Score=25.26 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+..||.|+++||.++..-..++.-..+++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888877777776666666553
No 49
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.16 E-value=52 Score=30.83 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~ 154 (528)
.+|.-|..+.++..+=..-+.+...|+..||++++.+.+|...++.+.++.+.-
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~ 70 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN 70 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 344445555555444444456777888888888888888887777666644433
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.10 E-value=86 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHH
Q 009689 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQ 136 (528)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (528)
..|..||-..+..++-=++=|..||.+-..|.++...
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776666555566666666664444433
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.56 E-value=89 Score=23.09 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 124 KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
..++++||.++.....|-+....-+..+-+++..|.+-++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888887777777777777777766544
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.49 E-value=48 Score=35.74 Aligned_cols=44 Identities=9% Similarity=0.267 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhh
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDR 165 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~ 165 (528)
.|+++++.|+++|..-=+++...|+.|..-+.|+-+||.-+...
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998777889999999988877777766655433
No 53
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=39.06 E-value=70 Score=24.72 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLL 167 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~l 167 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-..+|++.++.+.+-+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999887766655432 3455555666777776665543
No 54
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.30 E-value=31 Score=23.91 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 009689 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 142 (528)
..|.++++..|+|+..|+.+|..-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887777666555
No 55
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.02 E-value=58 Score=28.45 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhHHHHHHHHhhhhhhc
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~-----~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-.-+|++.++.+.+-+.
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~ 67 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKE 67 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998887776663 57777777788888887766554
No 56
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=36.78 E-value=9.5 Score=35.90 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=40.8
Q ss_pred cceeeeeecCCCCCCCccCCceechhhHHH--HhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHH
Q 009689 50 AWSTLFDVEDPRSKVPQCKGKFLDVNQALE--VARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKEL 127 (528)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (528)
.-..+|.-||||- .|-||=. .--||+.|+|- -.--+.+...|..+-.-+.-|+|||+||
T Consensus 61 dlnqifnkedpry----------evvqagasaahdfdvryldi---------hkhgreiarllekiqkyfQ~IEtlK~ql 121 (294)
T 3caz_A 61 DLNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDI---------HKHGREIARLLEKIQKYRQEIEEIKKEY 121 (294)
T ss_dssp HHTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHH---------HHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcch----------HHHHcccccccccchhhhhH---------HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999985 3444433 34578888873 2222334444444555566689999999
Q ss_pred HHHHH
Q 009689 128 AELQE 132 (528)
Q Consensus 128 ~~l~~ 132 (528)
++.|+
T Consensus 122 ~nf~e 126 (294)
T 3caz_A 122 KETDK 126 (294)
T ss_dssp HHHHH
T ss_pred hhhHH
Confidence 88775
No 57
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=36.10 E-value=1e+02 Score=24.18 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=35.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh-h----HHHHHHHHhHHHHHHHHhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHI-S----EARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~-s----~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+|...|.++|.+|..||..-+-|-.+ . =+|+...-..+|++.++.+.+-
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~ 65 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEG 65 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999887766555 2 2456666666777777766554
No 58
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.69 E-value=76 Score=25.10 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh------HHHHH-------HHHhHHHHHHH
Q 009689 121 GTMKKELAELQEDLAQAHRQVHIS------EARVA-------TALDKLAYMEA 160 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~s------~~rv~-------~~l~~~~~~~~ 160 (528)
..|.++|..+|++++++. +.++. +.-+. ++.+|||+++.
T Consensus 16 eel~~klk~~~ee~~~~~-eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMN 67 (71)
T 1s1c_X 16 EELTEKMKKAEEEYKLEK-EEEISNLKAAFEKNINTERTLKTQAVNKLAEIMN 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777788877765 32332 11111 78888887653
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.00 E-value=95 Score=29.90 Aligned_cols=9 Identities=56% Similarity=1.280 Sum_probs=4.8
Q ss_pred eeEeccCCC
Q 009689 267 GRIQCPYHG 275 (528)
Q Consensus 267 ~~i~CPYHG 275 (528)
..+.|||-|
T Consensus 221 ~Iv~Cp~Cg 229 (256)
T 3na7_A 221 DMITCPYCG 229 (256)
T ss_dssp SCEECTTTC
T ss_pred CEEECCCCC
Confidence 456666543
No 60
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.84 E-value=18 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHIS 144 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s 144 (528)
++..||+.+.+||.|+-+|..++-..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998888887776544
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.55 E-value=1.3e+02 Score=25.04 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
.|..+|..+++.|..|..++-.++.+.+
T Consensus 55 ~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555444444444444
No 62
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=34.41 E-value=89 Score=24.57 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=34.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-..+|++.++.+.+-
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~ 68 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKR 68 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988877765543 344455556666666666543
No 63
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=33.38 E-value=1e+02 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh-H----HHHHHHHhHHHHHHHHhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHIS-E----ARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s-~----~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+|...|.++|.+|.+||..-.-|-.+. + +++...-.-+|++.++.+.+-
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~ 66 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKR 66 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999998877766555 1 455555556666666665443
No 64
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.27 E-value=45 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=28.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~ 155 (528)
||..|.|++..|.++|..+..+--.....+.+++.-+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999888777766666676666543
No 65
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=33.01 E-value=1.1e+02 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHhHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVA---TALDKLA 156 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~---~~l~~~~ 156 (528)
-.+++..|+.||+||-.-.++++..+.++. .+..||+
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLN 52 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN 52 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhh
Confidence 345666777777777666666666666654 4444444
No 66
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.72 E-value=59 Score=20.32 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009689 121 GTMKKELAELQEDLAQAHRQV 141 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~ 141 (528)
..|-|||..|||.|.+-...+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999888776654
No 67
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.56 E-value=1.5e+02 Score=24.16 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 120 ~~~~~~~~~~l~~~----------~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
+..|+.+++.|+.. +..++.+++.+...+...|+.++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777665 888889999998888888887776
No 68
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.05 E-value=1.5e+02 Score=26.22 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHhHHHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISE---ARVATALDKLAYMEA 160 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~---~rv~~~l~~~~~~~~ 160 (528)
+-..||-..-.--.--+|-+++||-++..+|+-+.+|..++..+- ..-|-+..||.+||.
T Consensus 43 EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEA 105 (167)
T 4gkw_A 43 EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEA 105 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHh
Confidence 334444433333334467789999999999999999998876542 223356677878754
No 69
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.73 E-value=50 Score=30.44 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=36.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhhhc
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQ 168 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~l~ 168 (528)
+|...|.++|.+|.+||.+-+-|-.+.+ .|+...-..+|++.++.+.+-+.
T Consensus 73 lS~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel~ 127 (173)
T 3bbo_Z 73 KTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIK 127 (173)
T ss_dssp SCHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999887776665433 35556666677788877776654
No 70
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=31.66 E-value=57 Score=28.98 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=34.3
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
++.-.....||+|++.|++++.+.-.|+- +++.+..-|+.++++
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~~ 54 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITRT 54 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 33445678899999999999999988886 777777777766654
No 71
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=31.20 E-value=93 Score=27.20 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~ 166 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-.-+|++.++.+.+-
T Consensus 14 ~s~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~er~ 66 (124)
T 3iz5_c 14 KSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQ 66 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999987766655432 233344444555555555433
No 72
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=30.72 E-value=89 Score=24.18 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhhhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLL 167 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~~~~l 167 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-..+|++.++.+.+-+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (67)
T 2zjr_V 9 LQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELAR 62 (67)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887776655432 3555666667777777665544
No 73
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.42 E-value=29 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=18.1
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 009689 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (528)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 140 (528)
.|-+.|..++.++ .+|.+|..+|++++.++..+
T Consensus 24 EVD~FLd~v~~~~---~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY---EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4555555555554 35677777777777666554
No 74
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.15 E-value=1.5e+02 Score=21.11 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEAL 161 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~ 161 (528)
-|||.+|.|..+-.+-....+..|.-+..-.+.+++||.-
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3566666655554444444444444444444455555543
No 75
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.05 E-value=1.3e+02 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~ 156 (528)
|..|++.+..|++++-++..++..+...+...-.+++
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555555555444444444
No 76
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.54 E-value=97 Score=31.34 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhh
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~ 163 (528)
+..|.+||..|+..+..+..+++..++.+.++-.|+.+|+..+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666655443
No 77
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.40 E-value=1.3e+02 Score=23.76 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 122 ~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
.+..++..||.-+..-..++-.++.|+..+..||..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 78
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=27.81 E-value=56 Score=25.02 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=29.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhHHHHHHHHhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVN 163 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~----~rv~~~l~~~~~~~~~~~ 163 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-.-+|++.++.+
T Consensus 9 ~s~~EL~~~l~elk~Elf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (63)
T 3r8s_Y 9 KSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLN 58 (63)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHTTCCSCGGGTHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999988777765532 222333334444444443
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.60 E-value=94 Score=27.47 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 126 ELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 126 ~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
++..|-.||..+..+.-.++..++....++..|
T Consensus 90 E~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333333333
No 80
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.48 E-value=2e+02 Score=23.72 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHhHHHHH
Q 009689 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA------TALDKLAYM 158 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~------~~l~~~~~~ 158 (528)
...-..++.+-+..+-|- +..|..++...++.|..|+..+-.++.+.+ .+|+|.-+|
T Consensus 35 ~e~~~~~~E~ei~sL~kK---iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKK---LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554433 568888999999999999988888887777 566666554
No 81
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=27.11 E-value=79 Score=28.95 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=44.5
Q ss_pred echhhHHHH-hh--hc--------cccc-------ccccc-----hhhHHHHHHHHHHHHhhChhh-------------h
Q 009689 72 LDVNQALEV-AR--YD--------IQYC-------DWRAR-----QDVLTIMLLHEKVVEVLNPLA-------------R 115 (528)
Q Consensus 72 ~~~~~~~~~-~~--~~--------~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~ 115 (528)
||++.|+|- .| .. ..|+ +||.+ +.+--|-.+=++|.+.|+.+. -
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~ 86 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTS 86 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999886 22 22 3467 99999 666677788888888888876 3
Q ss_pred hccchhhHHHHHHHHHH
Q 009689 116 DYKSIGTMKKELAELQE 132 (528)
Q Consensus 116 ~~~~~~~~~~~~~~l~~ 132 (528)
|..=...||+||.-|.+
T Consensus 87 d~~L~~kl~r~Lq~l~d 103 (163)
T 1z23_A 87 DRTLHAKLSRQLQKMED 103 (163)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhh
Confidence 44434678888887766
No 82
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.97 E-value=1.7e+02 Score=23.55 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhChhhhhccch--------hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Q 009689 100 MLLHEKVVEVLNPLARDYKSI--------GTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (528)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~ 154 (528)
+..|...++.++..+.....- ..++++|..|.+.+..-...+.-=..++..+|.+
T Consensus 52 i~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 52 LSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777665322 2466777777776666666665555555555544
No 83
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.46 E-value=93 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
.|+-|+.---+-||.+ .+++.+||.|+..-.++++-.++-|+
T Consensus 54 TV~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 54 TVMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333445566 67899999999998888887766555
No 84
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.45 E-value=1.6e+02 Score=24.37 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~ 159 (528)
|..|.+.+..|+++|-++..++..+...++..-.+++..|
T Consensus 46 i~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 46 IVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888888888888888887777777443
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.94 E-value=2.4e+02 Score=22.28 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATAL 152 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l 152 (528)
|..|++.+..|+++|-++..++..+...++.+-
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666555443
No 86
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.59 E-value=1.3e+02 Score=19.66 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 009689 121 GTMKKELAELQEDLAQAHRQVHISEAR 147 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~s~~r 147 (528)
..|.+++-.||.-+++-+.++-..|.-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666666655544433
No 87
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=25.48 E-value=12 Score=23.67 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.5
Q ss_pred cchhhHHH
Q 009689 92 ARQDVLTI 99 (528)
Q Consensus 92 ~~~~~~~~ 99 (528)
+||||||.
T Consensus 16 t~QDLL~l 23 (26)
T 2h8b_A 16 TQQDLLTL 23 (26)
T ss_dssp CHHHHHTT
T ss_pred cHHHHHhh
Confidence 79999874
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.85 E-value=1.3e+02 Score=39.62 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
.=+|++|+.++++|.+|..++...++.+..--+|++.|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444443343333
No 89
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.70 E-value=3.1e+02 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 129 ELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 129 ~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
.+|+++-+-|+..-.+++.++.-|+|.-.+|.
T Consensus 66 sqQrQI~ENhkEMKq~aaqsaaLlsk~yh~en 97 (114)
T 2xzr_A 66 SQQRQINENHKEMKQIEDKIEEILSKIYHIEN 97 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555566666666666666555544
No 90
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=24.56 E-value=2e+02 Score=26.12 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~ 149 (528)
+..++.++..++.++..+..++...++.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 1c1g_A 57 LDKYSEALKDAQEKLELAEKKATDAEADVA 86 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 91
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.05 E-value=2.3e+02 Score=24.21 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHH-------------------HHHHHhHHHHHHHHhhhhhh
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEAR-------------------VATALDKLAYMEALVNDRLL 167 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~r-------------------v~~~l~~~~~~~~~~~~~~l 167 (528)
.+..|.++|.....+|.-|.+++.-.+.- |+.--+|+++|++++-++..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665544443 33455677777777766654
No 92
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.89 E-value=1.8e+02 Score=21.75 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHhHH
Q 009689 120 IGTMKKELAELQEDLA---QAHRQVHISEARVATALDKL 155 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~---~a~~~~~~s~~rv~~~l~~~ 155 (528)
|=.||.|+.+||.|.. ++-...+.+..|++..+.|.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999998754 44555667777777777665
No 93
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.41 E-value=82 Score=21.35 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (528)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 3567888887653 345555555554
No 94
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=23.34 E-value=1.1e+02 Score=30.36 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q 009689 126 ELAELQEDLAQAHRQVHISEARVATALDKL 155 (528)
Q Consensus 126 ~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~ 155 (528)
++...+-+++++..++...+..+..+...|
T Consensus 153 d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L 182 (428)
T 1ek9_A 153 DVQNARAQYDTVLANELTARNNLDNAVEQL 182 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 95
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.04 E-value=1e+02 Score=30.58 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 009689 128 AELQEDLAQAHRQVHISEARVAT 150 (528)
Q Consensus 128 ~~l~~~~~~a~~~~~~s~~rv~~ 150 (528)
+.++.+|++|..++...++++..
T Consensus 73 ~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 73 NTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 96
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.82 E-value=2.5e+02 Score=23.74 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHHHhhhhh
Q 009689 148 VATALDKLAYMEALVNDRL 166 (528)
Q Consensus 148 v~~~l~~~~~~~~~~~~~~ 166 (528)
|+.--+|+++|+++.-++.
T Consensus 84 Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 84 VSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455567777777665544
No 97
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.77 E-value=2.4e+02 Score=22.78 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Q 009689 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (528)
Q Consensus 119 ~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~ 159 (528)
+...|-.+|..||.|+++-.=++--..-.+++...+-.++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666665555555444444444444444433
No 98
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.76 E-value=2.6e+02 Score=22.29 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=31.4
Q ss_pred HHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 009689 101 LLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALD 153 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~ 153 (528)
..|...++.++..+.+..+ ...++++|..|++.+.+-...+.-=..++..+|.
T Consensus 53 ~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 53 TAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777776666532 2246666666666666655555555555555544
No 99
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=22.56 E-value=1.3e+02 Score=26.18 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=30.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHhHHHHHHHHhhhh
Q 009689 118 KSIGTMKKELAELQEDLAQAHRQVHISE--ARVATALDKLAYMEALVNDR 165 (528)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~a~~~~~~s~--~rv~~~l~~~~~~~~~~~~~ 165 (528)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-.-+|++.++.+.+
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgql~~~Ir~vRR~IARi~Tvl~er 61 (120)
T 3u5e_h 12 KSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQ 61 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999988776655433 23333344445555544433
No 100
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.32 E-value=1.4e+02 Score=29.33 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHh
Q 009689 124 KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (528)
Q Consensus 124 ~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~ 162 (528)
+.+|+.++.+|++|..++...++++..+-..+.++++|.
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 106 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLA 106 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 101
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.01 E-value=2.5e+02 Score=25.17 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=44.8
Q ss_pred ccccchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHH
Q 009689 89 DWRARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (528)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~ 157 (528)
.|.+.++-+ .|+..-+.+...++.|=..-.|-..--+.|+.|++|+.+|-.+....-.+-+.-|.++..
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655 355554555555555656667777888889999999998888776554444444444443
No 102
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.97 E-value=2.9e+02 Score=24.04 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred ccccchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Q 009689 89 DWRARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (528)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~ 156 (528)
.|.+.++-+ .|+..-+.+....+.|=..-.|-..=-+.|+.|++|+.+|..+....-.+-+.-|.++.
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655 34444455555555555666677777888899999998888777655444444444433
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.63 E-value=2e+02 Score=22.72 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 128 AELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 128 ~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
-.||+.|.+.-.++..-++++..--.++.+.++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444444433
No 104
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.43 E-value=1.5e+02 Score=30.90 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhh
Q 009689 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (528)
Q Consensus 121 ~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~~~~~~~ 166 (528)
.+|++||.+|+++..+-..+.+..++.+...-+++.+. +..+.+|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~rr~l 50 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-NMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 57888888888888888888888888777777776663 3344333
No 105
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.21 E-value=39 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQA 137 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a 137 (528)
+.+||+|+++|=|.+..|
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457889999988877665
No 106
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.14 E-value=2.5e+02 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQV 141 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~ 141 (528)
+..|-++|+.++.+|..+-.++
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 107
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=20.71 E-value=1.9e+02 Score=23.72 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q 009689 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHI 143 (528)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 143 (528)
|..+-.+|+++.+.+. +. =..++|+|..+++=|+++|+.+-.
T Consensus 37 l~qv~q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~r 78 (97)
T 3g80_A 37 LEQLAQETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAYR 78 (97)
T ss_dssp HHHHHHHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888888877 22 278999999999999999987654
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.58 E-value=1.6e+02 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Q 009689 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (528)
Q Consensus 120 ~~~~~~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~~~ 160 (528)
+..|+.+|+.|+++..+-...++..++++...-.++...|.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766665555443
No 109
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.52 E-value=1.2e+02 Score=20.82 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=18.1
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHH
Q 009689 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLA 135 (528)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (528)
.|-+||+|.|+. ..+|..|.+.|++.+.
T Consensus 5 QLE~kVEeLl~~-------~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESE-------VWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------hHHHHHHHHHHHHHhc
Confidence 356788888764 4466666666666554
No 110
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.27 E-value=2.3e+02 Score=20.67 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Q 009689 125 KELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (528)
Q Consensus 125 ~~~~~l~~~~~~a~~~~~~s~~rv~~~l~~~~~~ 158 (528)
+++..|++.+-..+.+++...++++.+-.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666555555554
Done!