BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009690
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 349 bits (896), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/464 (41%), Positives = 270/464 (58%), Gaps = 41/464 (8%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFT 110
L SLL++EAQRSGRLP +Q+VTWR S L D +QG DL GGY+DAGD VKFG PMA+T
Sbjct: 9 LRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGFPMAYT 68
Query: 111 VTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQ 170
T+L+WG+I+F ++AG L+ +A+KW TDYFIKAHTS N + +VG GD DH W
Sbjct: 69 ATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWG 128
Query: 171 RPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEFG 230
RPEDMT +R AYKID + PGSDLAGET SIVF+ + YS+ LL HA+QLF+F
Sbjct: 129 RPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFA 188
Query: 231 DKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGIGW 290
+ +RGKY +S+ +++YAS Y DEL+W A WL +AT+++ YL + D FG W
Sbjct: 189 NNYRGKYSDSITDARNFYASAD-YRDELVWAAAWLYRATNDNTYLNTAESLYDEFGLQNW 247
Query: 291 AITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNKNNGSNVDR 350
+WD K +G+QV+ +KL K+ +K + Y+ +N N +
Sbjct: 248 G-GGLNWDSKVSGVQVLLAKLTNKQAYKD-----------TVQSYVNYLIN-----NQQK 290
Query: 351 TRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEILSFAKSQVDY 410
T GLLYI W +++ + AAF++ ++L L ++ FA++Q+DY
Sbjct: 291 TPKGLLYIDMWGTLRHAANAAFIMLEAAELGLSAS-------------SYRQFAQTQIDY 337
Query: 411 ILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQNPNVI 470
LG S++ G+G PTR HHR +S + N ++ D N +V+
Sbjct: 338 ALGDG--GRSFVCGFGSNPPTRPHHRSSSCPPAPATCDW--------NTFNSPDPNYHVL 387
Query: 471 VGALVGGPDWRDNFMDQRNNYMQTEACTYNTAPLVGVFAKLSQL 514
GALVGGPD DN++D R++Y+ E T A A L L
Sbjct: 388 SGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVAL 431
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 193/488 (39%), Positives = 259/488 (53%), Gaps = 65/488 (13%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFT 110
L KS+ ++EAQRSG+LP N RV+WR SGL DG + G+DL GG+YDAGD VKFG PMAFT
Sbjct: 10 LQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFT 69
Query: 111 VTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQ 170
TML+WG IE E +G++ + + ++W DYFIKAH SPNVL+ +VGDGD DH W
Sbjct: 70 ATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWG 129
Query: 171 RPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEFG 230
E M R ++K+D + PGSD+A ET SIVF +P Y+ L+ HA+QL+ F
Sbjct: 130 PAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFA 189
Query: 231 DKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNAD------- 283
D +RG Y + V A ++Y S SGY DEL+WGA WL KAT +D YL D
Sbjct: 190 DTYRGVYSDCVPA-GAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQ 248
Query: 284 -NFGGIGWAITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNK 342
+ W I +WD K G V LLAKE K++Y ++ +Y+
Sbjct: 249 TDLRSYRWTI---AWDDKSYGTYV----LLAKETGKQKY---IDDANRWLDYWTVGV--- 295
Query: 343 NNGSNVDRTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEILS 402
NG V + GG+ + W ++Y + AF+ +Y+ ++ D V Q
Sbjct: 296 -NGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDP----------VRKQRYHD 344
Query: 403 FAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHRGA------SIVSYRENKGFIGCTQGY 456
FA Q++Y LG NP N SY+VG+G P HHR A SI S EN+
Sbjct: 345 FAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIASPAENR--------- 395
Query: 457 DNWYSRVDQNPNVIVGALVGGP-DWRDNFMDQRNNYMQTEACT-YNTAPLVGVFAKLSQL 514
+V+ GALVGGP D + D R +Y+ E T YN G + L+ L
Sbjct: 396 -----------HVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYN----AGFSSALAML 440
Query: 515 EEQRNSNP 522
E+ P
Sbjct: 441 VEEYGGTP 448
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 172/470 (36%), Positives = 245/470 (52%), Gaps = 43/470 (9%)
Query: 51 LSKSLLYFEAQRSGRLPYNQ-RVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAF 109
L K++ ++E QRSG+L + R+ WR SGL DG + G+DL GG+YDAGD VKF LPM++
Sbjct: 30 LQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFNLPMSY 89
Query: 110 TVTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCW 169
+ ML W V E+ + +G+ H IKW DYFIK H +V + +VGDG DH W
Sbjct: 90 SAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHADHAWW 149
Query: 170 QRPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEF 229
E M R +YK+D ++PGS + ET SI+FKK + YS L HA++LFEF
Sbjct: 150 GPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEF 209
Query: 230 GDKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGIG 289
D K D+ A +Y S SG+ DEL W A+WL AT++ YL + +D +G
Sbjct: 210 ADT--TKSDDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDKWGYEP 267
Query: 290 WA-ITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNKNNGSNV 348
I ++ W + + LLA+ ++ +Y+ E ++ NG +
Sbjct: 268 QTNIPKYKWAQCWDDVTYGTYLLLARIKNDNG------KYKEAIERHLDWWTTGYNGERI 321
Query: 349 DRTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEILSFAKSQV 408
T GL ++ W +++Y +T AFL +YSD NG+ + L FA+SQ
Sbjct: 322 TYTPKGLAWLDQWGSLRYATTTAFLACVYSDWE---------NGDKEKAKTYLEFARSQA 372
Query: 409 DYILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQNP- 467
DY LGS S++VG+G P R HHR A + +W + P
Sbjct: 373 DYALGST--GRSFVVGFGENPPKRPHHRTA-----------------HGSWADSQMEPPE 413
Query: 468 --NVIVGALVGGPDWRDNFMDQRNNYMQTE-ACTYNTAPLVGVFAKLSQL 514
+V+ GALVGGPD DN+ D +NY E AC YN A VG+ AK+ +L
Sbjct: 414 HRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYN-AGFVGLLAKMYKL 462
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 173/467 (37%), Positives = 247/467 (52%), Gaps = 39/467 (8%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFT 110
L K+++++E Q SG+LP R WR S L DG + G+DL GG++DAGD VKF LPM++T
Sbjct: 32 LQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNLPMSYT 91
Query: 111 VTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQ 170
TMLSW V E+++ +G+LEH I+W DYF+K H S V + +VGDG DH W
Sbjct: 92 GTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGSKDHAWWG 151
Query: 171 RPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEFG 230
E M R ++K+ +++PGS + ET SIV K NP + L HA++L+EF
Sbjct: 152 PAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKELYEFA 211
Query: 231 DKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGI-G 289
+ K D A YY S SG+ DEL W A+WL AT++ YL + N+ I G
Sbjct: 212 E--VTKSDAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISG 269
Query: 290 WAITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNKNNGSNVD 349
++ W + + A+ LLAK K Y I+E + +Y+ NG +
Sbjct: 270 SNTIDYKWAHCWDDVHNGAALLLAKITGKDIYKQIIESH---LDYWTTGY----NGERIK 322
Query: 350 RTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEIL-SFAKSQV 408
T GL ++ W +++Y +T AFL +YSD + G +EI F +SQ+
Sbjct: 323 YTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV----------GCPSTKKEIYRKFGESQI 372
Query: 409 DYILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQNPN 468
DY LGS S++VG+G P R HHR A S+ +++ Y R +
Sbjct: 373 DYALGS--AGRSFVVGFGTNPPKRPHHRTAH-SSWADSQSIPS--------YHR-----H 416
Query: 469 VIVGALVGGPDWRDNFMDQRNNYMQTE-ACTYNTAPLVGVFAKLSQL 514
+ GALVGGP D++ D +NY+ E AC YN A VG AK+ QL
Sbjct: 417 TLYGALVGGPGSDDSYTDDISNYVNNEVACDYN-AGFVGALAKMYQL 462
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 244/466 (52%), Gaps = 44/466 (9%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFT 110
L KS++++E QRSG LP ++R WRD SG+ DG + GVDL GG+YDAGD VKF LPM++T
Sbjct: 10 LQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYT 69
Query: 111 VTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQ 170
ML+W + E ++ +G+ ++ + IKW DYFIK + +P V + +VGDG DH W
Sbjct: 70 SAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWG 129
Query: 171 RPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEFG 230
E M R ++K+D + PGS + T ++VFK ++P Y+ + HA+ LF+
Sbjct: 130 PAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMA 189
Query: 231 DKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGIGW 290
DK K D A YY+S S + D+L W A+WL AT++ YL + N+G
Sbjct: 190 DK--AKSDAGYTAASGYYSSSS-FYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQ 246
Query: 291 A-ITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNKNNGSNVD 349
I + W + + A LLAK +K+ Y +E + +++ NG+ V
Sbjct: 247 TDIIAYKWGQXWDDVHYGAELLLAKLTNKQLYKDSIE---MNLDFWTTGV----NGTRVS 299
Query: 350 RTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEILSFAKSQVD 409
T GL ++ W ++++ +T AFL +Y++ C V + F KSQ+D
Sbjct: 300 YTPKGLAWLFQWGSLRHATTQAFLAGVYAEW-------EGCTPSKVSVYK--DFLKSQID 350
Query: 410 YILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQ---N 466
Y LGS S++VGYG P HHR A + +W ++ +
Sbjct: 351 YALGS--TGRSFVVGYGVNPPQHPHHRTA-----------------HGSWTDQMTSPTYH 391
Query: 467 PNVIVGALVGGPDWRDNFMDQRNNYMQTE-ACTYNTAPLVGVFAKL 511
+ I GALVGGPD D + D+ NNY+ E AC YN A G AK+
Sbjct: 392 RHTIYGALVGGPDNADGYTDEINNYVNNEIACDYN-AGFTGALAKM 436
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 244/466 (52%), Gaps = 44/466 (9%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAFT 110
L KS++++E QRSG LP ++R WRD SG+ DG + GVDL GG+YDAGD VKF LPM++T
Sbjct: 10 LQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYT 69
Query: 111 VTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQ 170
ML+W + E ++ +G+ ++ + IKW DYFIK + +P V + +VGDG DH W
Sbjct: 70 SAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWG 129
Query: 171 RPEDMTTSRHAYKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFEFG 230
E M R ++K+D + PGS + T ++VFK ++P Y+ + HA+ LF+
Sbjct: 130 PAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMA 189
Query: 231 DKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGIGW 290
DK K D A YY+S S + D+L W A+WL AT++ YL + N+G
Sbjct: 190 DK--AKSDAGYTAASGYYSSSS-FYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQ 246
Query: 291 A-ITEFSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCLNKNNGSNVD 349
I + W + + A LLAK +K+ Y +E + +++ NG+ V
Sbjct: 247 TDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIE---MNLDFWTTGV----NGTRVS 299
Query: 350 RTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEILSFAKSQVD 409
T GL ++ W ++++ +T AFL +Y++ C V + F KSQ+D
Sbjct: 300 YTPKGLAWLFQWGSLRHATTQAFLAGVYAEW-------EGCTPSKVSVYK--DFLKSQID 350
Query: 410 YILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQ---N 466
Y LGS S++VGYG P HHR A + +W ++ +
Sbjct: 351 YALGST--GRSFVVGYGVNPPQHPHHRTA-----------------HGSWTDQMTSPTYH 391
Query: 467 PNVIVGALVGGPDWRDNFMDQRNNYMQTE-ACTYNTAPLVGVFAKL 511
+ I GALVGGPD D + D+ NNY+ E AC YN A G AK+
Sbjct: 392 RHTIYGALVGGPDNADGYTDEINNYVNNEIACDYN-AGFTGALAKM 436
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 225/469 (47%), Gaps = 64/469 (13%)
Query: 51 LSKSLLYFEAQRSG-RLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDQVKFGLPMAF 109
L S+++F+A + G + N WR TDG + GVDL GGY+DAGD VKFGLP +
Sbjct: 10 LKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKFGLPQGY 69
Query: 110 TVTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCW 169
+ +L W + EF+E A G + +K+ TDYF+K+H + + +VG+G+ DH W
Sbjct: 70 SAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYW 129
Query: 170 QRPEDMTTSRHA-YKIDENNPGSDLAGETXXXXXXXSIVFKKTNPHYSHLLLHHAQQLFE 228
PE+ T R + YK D ++P SD+ ET + +K + Y+ L+ A++L+
Sbjct: 130 GAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYA 189
Query: 229 FGDKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWLSKATDNDKYLQYVINNADNFGGI 288
GK ++ V +S+Y + S + D+L W A WL AT++ Y I +A+ F +
Sbjct: 190 M-----GKANQGVGNGQSFYQATS-FGDDLAWAATWLYTATNDSTY----ITDAEQFITL 239
Query: 289 GWAITE--------FSWDVKYAGLQVMASKLLAKEQHKKQYGYILEQYRLKAEYYICSCL 340
G + E WD Y + +++ K+ +K + ++
Sbjct: 240 GNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWK----------- 288
Query: 341 NKNNGSNVDRTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLNCNGEIVGHQEI 400
+ V T GGL ++ W ++Y + + ++ +Y D Q +
Sbjct: 289 -----TQVTTTPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPD--------------QSL 329
Query: 401 LSFAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKGFIGCTQGYDNWY 460
L AK QVDYILG NP NMSY++GYG + HHR A+ +Y DN
Sbjct: 330 LDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANG----------DN-- 377
Query: 461 SRVDQNPNVIVGALVGGPDWRDNFMDQRNNYMQTEACTYNTAPLVGVFA 509
+++ GALVGGPD D F+D N Y TE A LVGV A
Sbjct: 378 --AKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/456 (29%), Positives = 216/456 (47%), Gaps = 55/456 (12%)
Query: 88 VDLVGGYYDAGDQVKFGLPMAFTVTMLSWGVIEFREQIAAAGELEHAFEAIKWGTDYFIK 147
VD+ GG++DAGD VKFGLP A+ + + WG EF++Q A G+ HA +++ DYF++
Sbjct: 108 VDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMR 167
Query: 148 A---HTSPNVL--WAEVGDGDTDHYCWQRPEDMTTSRHAYKIDENNPGSDLAGETXXXXX 202
S NV+ +VGDGD DH W PE+ T R + I + PG+D+ T
Sbjct: 168 CTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLA 227
Query: 203 XXSIVFKKTNPHYSHLLLHHAQQLFEFGDKFRGKYDESVEAVKSYYASVSGYMDELLWGA 262
+ FK T+P Y+ L +A+ LF+F +K + + K YY S S + D+ W A
Sbjct: 228 INYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKGYYGS-SKWQDDYCWAA 286
Query: 263 MWLSKATDNDKYLQYVINNADNFGGIGWAITEFSWDVKYAGLQVMASKLLAKEQHKKQYG 322
WL AT N+ YL D + GW W+ ++G + +++ + + K
Sbjct: 287 AWLYLATQNEHYLDEAFKYYDYYAPPGWI---HCWNDVWSGTACILAEI--NDLYDKDSQ 341
Query: 323 YILEQYRLKA--------EYY--ICSCLNKNNGSNVDRTRGGLLYIRPWNNMQYVSTAAF 372
++Y+ + +++ I L+K +G + T GG +++ W + +Y + A
Sbjct: 342 NFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQL 401
Query: 373 LLTIYSDLLLDSNQPLNCNGEIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYPTR 432
+ +Y D+ + ++A+SQ+DY+LG NP+N Y+VGY
Sbjct: 402 IALVYDKHHGDT------------PSKYANWARSQMDYLLGKNPLNRCYVVGYSSNSVKY 449
Query: 433 VHHRGASIVSYRENKGFIGCTQGYDNWYSRVDQNPN--VIVGALVGGPDWRDNFMDQRNN 490
HHR AS + D +P+ V+ GALVGGPD D +D+ N+
Sbjct: 450 PHHRAASGLK------------------DANDSSPHKYVLYGALVGGPDASDQHVDRTND 491
Query: 491 YMQTEACTYNTAPLVGVFAKLSQL--EEQRNSNPSL 524
Y+ E A VG A L + + +PS+
Sbjct: 492 YIYNEVAIDYNAAFVGACAGLYRFFGDSSMQIDPSM 527
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 388 LNCNGEIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENK 447
L G V H + A+ DY+ G+NP+ Y+ G+G + HHR + V+ +
Sbjct: 415 LLAEGVGVLHPAAHTVAQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPS--VADDVDH 472
Query: 448 GFIGCTQGYDNWYSRVDQNPNVIVGALVGGPDWRDNFMDQRNNYMQTEACTYNTAPLVGV 507
G G N + + + I A + G + ++D +++Y E Y +P V V
Sbjct: 473 PVPGMVVGGPNRHLQ-----DEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFV 527
Query: 508 FAKL 511
A L
Sbjct: 528 IAAL 531
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 51 LSKSLLYFEAQRSGR-LPYNQRVTWRDHSGLTD-----GLEQGVDLVGGYYDAGDQVKFG 104
L L +F+ Q G LP ++ W + T G E+ + GG++DAGD K+
Sbjct: 92 LEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDYGKYT 151
Query: 105 LPMAFTVTML 114
+P A V L
Sbjct: 152 VPAAKAVADL 161
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 393 EIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHR-GASIVSYRENKGFIG 451
+ G + L + Y+LG N M+ SY+ GYG + H R S R G
Sbjct: 489 DFTGDSKYLDGMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPAPPPG 548
Query: 452 CTQGYDNWYSRVDQNPNVIVGALVGGPDWRDNFMDQRNNYMQTEACTYNTAPLVGVFAKL 511
G N SR ++P + P + F+D +++ E AP V A L
Sbjct: 549 IISGGPN--SRF-EDPTINAAVKKDTPP-QKCFIDHTDSWSTNEITVNWNAPFAWVTAYL 604
Query: 512 SQ 513
Q
Sbjct: 605 DQ 606
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 386 QPLNCNGEIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYP 430
QP + EI Q++ FA+ +++I+G NP +M L G+G P
Sbjct: 458 QPHIASQEI--QQQLSVFAQDALNWIVGLNPYDMCMLDGHGRNNP 500
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 51 LSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYYDA-GDQVKFGLPMAF 109
LS + YF++QR G + ++Q+ D Q D+ GG+YDA GD K+ +++
Sbjct: 101 LSDVIHYFKSQRCGGV-FDQQ----DRQVPVLNANQTADVHGGWYDASGDVSKYLSHLSY 155
Query: 110 T-------VTMLSWGV------IEFREQIAAAGELEHAFEAIKWGTDYFIKAHTSPNVLW 156
M+ W + +E E IAA EA+ +G D+ ++ +
Sbjct: 156 ANYLNPQQTPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEAL-FGADFLVRMQNEKGFFY 214
Query: 157 AEVGD 161
V D
Sbjct: 215 MTVFD 219
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 29/233 (12%)
Query: 207 VFKKTNPHYSHLLLHHAQQLFEF-GDKFRGKYDESVEAVKSYYASVSGYMDELLWGAMWL 265
+F+ +P Y+ ++ A+ +EF + + YA+VS D+ LW A +
Sbjct: 302 IFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSD-ADDRLWAAAEM 360
Query: 266 SKATDNDKYLQYVINNADNFGGIGWAITEFSWDVKYAGLQVMASKLLAKEQHKKQ--YGY 323
+ +++YL+ N A F A +F WD A L M + LL++ K
Sbjct: 361 WETLGDEEYLRDFENRAAQFSKKIEA--DFDWD-NVANLG-MFTYLLSERPGKNPALVQS 416
Query: 324 ILEQYRLKAEYYICSCLNKNNGSNVDRTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLD 383
I + A+ + + N G RT G Y W V +L + +
Sbjct: 417 IKDSLLSTADSIVRTSQNHGYG----RTLGTTYY---WGCNGTVVRQTMILQVAN----- 464
Query: 384 SNQPLNCNGEIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHR 436
+I + + ++ A + ++ G N N SY+ G G P H R
Sbjct: 465 ---------KISPNNDYVNAALDAISHVFGRNYYNRSYVTGLGINPPMNPHDR 508
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 350 RTRGGLLYIRPWNNMQYVSTAAFLLTIYSDLLLDSNQPLN----CNGEIVGHQEILSFAK 405
R R L Y P + +V T L L L PL C + G+ E+
Sbjct: 36 RXRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTG 95
Query: 406 SQVDYILGSNPMNMSYLVGYGPKYPTRVHHRGASIVSYRENKG 448
+ V I + + +YL+GY P+ +H + ++ G
Sbjct: 96 NSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPG 138
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 393 EIVGHQEILSFAKSQVDYILGSNPMNMSYLVGYGPKYPTRVHHR 436
+ G + L + Y+LG N M+ SY+ GYG + H R
Sbjct: 489 DFTGDSKYLDGMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,754,322
Number of Sequences: 62578
Number of extensions: 734618
Number of successful extensions: 1313
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 24
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)