Query 009692
Match_columns 528
No_of_seqs 420 out of 1696
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 16:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.3E-78 4.9E-83 593.9 18.8 191 337-528 1-191 (229)
2 KOG0842 Transcription factor t 99.7 4.4E-17 9.5E-22 166.2 7.9 68 131-198 150-217 (307)
3 KOG0483 Transcription factor H 99.7 4.2E-17 9.2E-22 157.8 5.3 80 137-216 53-132 (198)
4 KOG0488 Transcription factor B 99.6 1.4E-16 3.1E-21 164.2 4.8 65 131-195 169-233 (309)
5 KOG0485 Transcription factor N 99.6 4E-16 8.6E-21 150.4 6.2 65 131-195 101-165 (268)
6 KOG0484 Transcription factor P 99.6 1.4E-16 3.1E-21 137.6 0.6 64 131-194 14-77 (125)
7 KOG0494 Transcription factor C 99.6 6.6E-16 1.4E-20 152.1 5.0 68 138-205 145-212 (332)
8 KOG0489 Transcription factor z 99.6 2.7E-16 5.9E-21 158.9 1.7 65 132-196 157-221 (261)
9 KOG0487 Transcription factor A 99.6 7.3E-16 1.6E-20 157.4 4.4 65 132-196 233-297 (308)
10 KOG0843 Transcription factor E 99.6 7.6E-16 1.7E-20 145.0 3.9 64 133-196 101-164 (197)
11 PF01852 START: START domain; 99.6 1.1E-14 2.3E-19 139.7 10.7 164 342-528 1-167 (206)
12 KOG0848 Transcription factor C 99.6 7.6E-15 1.7E-19 145.3 8.9 67 131-197 196-262 (317)
13 KOG0850 Transcription factor D 99.6 3.5E-15 7.7E-20 145.3 5.7 69 127-195 115-183 (245)
14 KOG0492 Transcription factor M 99.5 1.4E-14 3E-19 139.1 5.8 64 131-194 141-204 (246)
15 KOG2251 Homeobox transcription 99.5 1E-14 2.3E-19 141.4 4.6 66 131-196 34-99 (228)
16 PF00046 Homeobox: Homeobox do 99.5 6.9E-15 1.5E-19 114.5 2.4 57 135-191 1-57 (57)
17 smart00234 START in StAR and p 99.4 2.1E-12 4.6E-17 124.1 13.8 160 343-528 2-167 (206)
18 KOG0493 Transcription factor E 99.4 6.8E-13 1.5E-17 131.1 9.2 59 135-193 247-305 (342)
19 smart00389 HOX Homeodomain. DN 99.3 4.1E-13 8.9E-18 103.7 2.6 55 136-190 2-56 (56)
20 TIGR01565 homeo_ZF_HD homeobox 99.3 1.7E-12 3.6E-17 102.7 5.5 53 134-186 1-57 (58)
21 cd00086 homeodomain Homeodomai 99.3 5.7E-13 1.2E-17 103.5 2.8 56 136-191 2-57 (59)
22 KOG0486 Transcription factor P 99.3 1E-12 2.2E-17 133.0 5.3 63 132-194 110-172 (351)
23 KOG0844 Transcription factor E 99.3 8.1E-13 1.8E-17 132.9 3.3 64 131-194 178-241 (408)
24 COG5576 Homeodomain-containing 99.3 1.2E-12 2.6E-17 122.9 4.0 65 133-197 50-114 (156)
25 KOG0491 Transcription factor B 99.3 4E-13 8.8E-18 125.0 -1.6 65 133-197 99-163 (194)
26 KOG3802 Transcription factor O 99.2 7E-12 1.5E-16 131.0 5.4 63 131-193 291-353 (398)
27 KOG4577 Transcription factor L 99.2 1.5E-11 3.2E-16 123.2 5.5 73 133-205 166-238 (383)
28 KOG0847 Transcription factor, 99.2 5.3E-12 1.2E-16 122.2 1.5 64 131-194 164-227 (288)
29 cd00177 START Lipid-binding ST 99.0 1.7E-09 3.6E-14 101.4 11.1 158 346-528 2-159 (193)
30 KOG0490 Transcription factor, 99.0 1.3E-10 2.9E-15 113.6 3.8 64 131-194 57-120 (235)
31 KOG0849 Transcription factor P 98.8 3.8E-09 8.3E-14 111.4 3.3 64 131-194 173-236 (354)
32 cd08904 START_STARD6-like Lipi 98.7 1.7E-07 3.8E-12 91.9 13.5 165 340-528 3-170 (204)
33 cd08867 START_STARD4_5_6-like 98.7 3E-07 6.6E-12 89.4 12.9 162 340-528 3-172 (206)
34 KOG1168 Transcription factor A 98.6 4E-08 8.6E-13 99.0 4.1 62 132-193 307-368 (385)
35 cd08871 START_STARD10-like Lip 98.5 7.4E-07 1.6E-11 87.7 12.3 154 346-528 10-167 (222)
36 cd08868 START_STARD1_3_like Ch 98.5 9.3E-07 2E-11 86.2 10.4 160 340-528 6-172 (208)
37 KOG0775 Transcription factor S 98.4 1.5E-07 3.2E-12 94.5 3.3 50 141-190 183-232 (304)
38 cd08903 START_STARD5-like Lipi 98.3 4.5E-06 9.7E-11 81.8 12.0 160 340-528 3-172 (208)
39 cd08869 START_RhoGAP C-termina 98.2 9.8E-06 2.1E-10 78.8 11.7 156 345-528 4-162 (197)
40 cd08909 START_STARD13-like C-t 98.2 1.5E-05 3.2E-10 78.4 11.6 121 393-528 48-170 (205)
41 PLN00188 enhanced disease resi 98.1 1E-05 2.2E-10 91.2 8.9 119 397-528 227-355 (719)
42 KOG0774 Transcription factor P 98.0 3.1E-06 6.8E-11 84.5 3.0 59 135-193 189-250 (334)
43 cd08905 START_STARD1-like Chol 97.9 3.3E-05 7.2E-10 75.8 8.9 159 339-528 5-173 (209)
44 cd08902 START_STARD4-like Lipi 97.8 0.00014 3.1E-09 71.2 10.7 160 340-528 3-168 (202)
45 PF05920 Homeobox_KN: Homeobox 97.8 3.5E-06 7.7E-11 62.0 -0.8 34 155-188 7-40 (40)
46 cd08906 START_STARD3-like Chol 97.8 0.00021 4.6E-09 70.3 11.1 162 339-528 5-173 (209)
47 KOG2252 CCAAT displacement pro 97.7 1.5E-05 3.3E-10 86.9 2.9 60 131-190 417-476 (558)
48 KOG0490 Transcription factor, 97.6 4.2E-05 9.2E-10 74.8 3.7 64 131-194 150-213 (235)
49 cd08908 START_STARD12-like C-t 97.6 0.00056 1.2E-08 67.4 11.3 156 344-528 11-169 (204)
50 cd08910 START_STARD2-like Lipi 97.5 0.0004 8.7E-09 68.1 9.0 149 351-528 16-171 (207)
51 cd08877 START_2 Uncharacterize 97.4 0.00078 1.7E-08 66.0 9.3 165 340-528 3-178 (215)
52 cd08907 START_STARD8-like C-te 97.3 0.00081 1.7E-08 66.1 7.5 157 344-528 11-170 (205)
53 cd08874 START_STARD9-like C-te 97.2 0.0012 2.7E-08 64.9 8.8 120 390-528 43-170 (205)
54 KOG1146 Homeobox protein [Gene 96.9 0.00077 1.7E-08 80.0 4.7 62 133-194 902-963 (1406)
55 cd08872 START_STARD11-like Cer 96.7 0.021 4.5E-07 57.4 12.1 161 346-528 10-191 (235)
56 cd08876 START_1 Uncharacterize 96.7 0.011 2.4E-07 56.4 9.7 119 398-528 42-161 (195)
57 cd08870 START_STARD2_7-like Li 96.3 0.039 8.4E-07 54.1 10.9 156 349-527 9-172 (209)
58 KOG0773 Transcription factor M 95.7 0.0078 1.7E-07 63.2 3.5 63 134-196 239-304 (342)
59 cd08911 START_STARD7-like Lipi 95.7 0.057 1.2E-06 52.9 9.0 117 398-527 46-170 (207)
60 cd08873 START_STARD14_15-like 95.1 0.11 2.4E-06 52.4 9.0 118 393-528 78-199 (235)
61 cd08913 START_STARD14-like Lip 94.6 0.23 5.1E-06 50.2 9.9 112 403-528 87-204 (240)
62 PF11569 Homez: Homeodomain le 94.2 0.0083 1.8E-07 47.4 -1.1 42 145-186 9-50 (56)
63 PRK09413 IS2 repressor TnpA; R 93.4 0.16 3.5E-06 45.7 5.5 41 138-183 10-51 (121)
64 cd08914 START_STARD15-like Lip 91.7 0.78 1.7E-05 46.4 8.4 118 398-528 79-200 (236)
65 KOG4196 bZIP transcription fac 90.6 1.2 2.5E-05 41.0 7.5 86 139-258 22-108 (135)
66 KOG4005 Transcription factor X 87.7 3.8 8.2E-05 41.4 9.4 38 183-220 82-121 (292)
67 KOG3623 Homeobox transcription 85.5 0.36 7.8E-06 55.2 1.2 48 146-193 568-615 (1007)
68 PF06005 DUF904: Protein of un 85.0 2.7 5.8E-05 35.0 5.8 51 193-264 15-69 (72)
69 PF04218 CENP-B_N: CENP-B N-te 84.6 0.59 1.3E-05 36.3 1.7 46 135-185 1-46 (53)
70 PRK15422 septal ring assembly 84.4 3.5 7.6E-05 34.9 6.3 60 190-263 12-75 (79)
71 cd08864 SRPBCC_DUF3074 DUF3074 83.3 3 6.5E-05 41.3 6.5 90 433-528 77-171 (208)
72 TIGR00219 mreC rod shape-deter 82.7 1.8 3.8E-05 44.9 4.8 42 197-255 67-108 (283)
73 COG3074 Uncharacterized protei 80.6 5.7 0.00012 32.9 6.0 57 194-264 16-76 (79)
74 PRK13922 rod shape-determining 78.5 3 6.5E-05 42.5 4.8 41 197-255 70-110 (276)
75 PF02183 HALZ: Homeobox associ 76.4 5.3 0.00011 30.3 4.3 39 193-259 2-40 (45)
76 KOG0971 Microtubule-associated 74.5 9.3 0.0002 45.2 7.6 55 200-260 336-390 (1243)
77 KOG4343 bZIP transcription fac 74.2 6.7 0.00015 43.8 6.2 25 356-382 439-463 (655)
78 PF01527 HTH_Tnp_1: Transposas 73.8 0.43 9.4E-06 38.6 -2.3 42 136-182 2-44 (76)
79 PF12711 Kinesin-relat_1: Kine 73.8 8 0.00017 33.4 5.3 43 203-260 24-66 (86)
80 TIGR03752 conj_TIGR03752 integ 66.7 8.6 0.00019 42.6 5.0 55 192-259 76-130 (472)
81 smart00338 BRLZ basic region l 63.9 28 0.00061 27.7 6.4 40 194-254 24-63 (65)
82 COG4026 Uncharacterized protei 63.3 17 0.00037 36.6 5.9 50 188-258 141-190 (290)
83 PRK14872 rod shape-determining 61.1 8.7 0.00019 40.9 3.7 55 196-268 57-113 (337)
84 KOG1146 Homeobox protein [Gene 60.9 3.9 8.5E-05 49.9 1.2 86 135-233 445-530 (1406)
85 smart00340 HALZ homeobox assoc 59.2 10 0.00022 28.5 2.7 19 242-260 16-34 (44)
86 KOG2761 START domain-containin 58.6 37 0.0008 34.2 7.4 100 407-521 64-173 (219)
87 COG1792 MreC Cell shape-determ 58.2 20 0.00044 37.2 5.8 43 195-255 65-107 (284)
88 PF06156 DUF972: Protein of un 57.7 22 0.00048 31.8 5.1 20 239-258 37-56 (107)
89 PF00170 bZIP_1: bZIP transcri 57.7 47 0.001 26.4 6.6 24 194-217 24-47 (64)
90 PF02183 HALZ: Homeobox associ 56.6 29 0.00063 26.3 4.8 22 196-217 12-33 (45)
91 cd08860 TcmN_ARO-CYC_like N-te 56.0 35 0.00075 31.6 6.4 39 401-443 5-43 (146)
92 PRK13169 DNA replication intia 54.9 43 0.00092 30.2 6.5 20 239-258 37-56 (110)
93 KOG4403 Cell surface glycoprot 51.0 39 0.00084 37.2 6.5 26 339-365 398-423 (575)
94 KOG4571 Activating transcripti 50.6 47 0.001 34.7 6.9 44 191-255 243-286 (294)
95 KOG0709 CREB/ATF family transc 49.4 1.1E+02 0.0024 34.1 9.7 96 138-261 218-316 (472)
96 PF07407 Seadorna_VP6: Seadorn 48.7 22 0.00048 37.7 4.2 22 197-218 33-54 (420)
97 PF15058 Speriolin_N: Sperioli 48.4 27 0.00058 34.4 4.5 39 199-259 8-46 (200)
98 cd05018 CoxG Carbon monoxide d 47.6 58 0.0013 28.4 6.3 34 403-440 7-40 (144)
99 PF04880 NUDE_C: NUDE protein, 47.4 18 0.0004 34.8 3.1 20 239-258 25-44 (166)
100 PF14389 Lzipper-MIP1: Leucine 47.0 1.3E+02 0.0029 25.8 8.1 69 187-258 6-74 (88)
101 TIGR03752 conj_TIGR03752 integ 46.9 46 0.001 37.0 6.5 26 194-219 71-96 (472)
102 PF06785 UPF0242: Uncharacteri 46.5 27 0.00058 37.2 4.4 36 393-430 299-336 (401)
103 PF14197 Cep57_CLD_2: Centroso 46.1 59 0.0013 26.8 5.6 20 238-257 47-66 (69)
104 TIGR00219 mreC rod shape-deter 43.7 36 0.00079 35.3 4.9 43 201-261 64-107 (283)
105 KOG3119 Basic region leucine z 43.2 45 0.00098 34.4 5.5 24 240-263 231-254 (269)
106 KOG3119 Basic region leucine z 43.0 50 0.0011 34.0 5.8 19 242-260 226-244 (269)
107 KOG0288 WD40 repeat protein Ti 42.9 57 0.0012 35.7 6.3 53 464-526 293-345 (459)
108 PF04967 HTH_10: HTH DNA bindi 42.2 26 0.00057 27.4 2.8 37 141-177 1-39 (53)
109 PRK00888 ftsB cell division pr 41.9 27 0.00059 30.9 3.2 42 177-219 16-57 (105)
110 COG5570 Uncharacterized small 41.2 78 0.0017 25.0 5.1 45 201-259 10-54 (57)
111 PRK13729 conjugal transfer pil 40.4 75 0.0016 35.5 6.9 57 186-256 66-122 (475)
112 KOG4343 bZIP transcription fac 40.2 29 0.00063 39.1 3.7 18 239-256 317-334 (655)
113 cd06171 Sigma70_r4 Sigma70, re 39.1 12 0.00026 26.8 0.5 42 140-186 10-51 (55)
114 PRK00888 ftsB cell division pr 38.2 38 0.00083 30.0 3.5 37 181-217 26-62 (105)
115 KOG3156 Uncharacterized membra 36.6 1.1E+02 0.0023 30.8 6.6 47 194-260 92-138 (220)
116 PRK06266 transcription initiat 36.0 36 0.00079 32.9 3.3 34 221-254 136-169 (178)
117 PF12824 MRP-L20: Mitochondria 35.5 65 0.0014 31.0 4.9 43 139-183 84-126 (164)
118 PF08961 DUF1875: Domain of un 35.5 12 0.00027 37.5 0.0 36 194-250 127-162 (243)
119 PRK10724 hypothetical protein; 35.0 1.8E+02 0.0039 27.4 7.8 53 400-464 18-70 (158)
120 TIGR02449 conserved hypothetic 35.0 1.4E+02 0.003 24.5 6.0 20 199-218 10-29 (65)
121 PRK03975 tfx putative transcri 33.9 33 0.00073 32.1 2.6 46 139-190 5-50 (141)
122 PRK00118 putative DNA-binding 31.9 76 0.0016 28.3 4.4 47 140-191 17-63 (104)
123 cd07813 COQ10p_like Coenzyme Q 31.6 1.6E+02 0.0035 25.9 6.6 37 402-442 4-40 (138)
124 cd01106 HTH_TipAL-Mta Helix-Tu 31.1 99 0.0021 26.7 5.0 17 137-153 35-51 (103)
125 KOG3755 SATB1 matrix attachmen 30.9 8.9 0.00019 43.5 -2.0 45 150-194 708-759 (769)
126 PRK10884 SH3 domain-containing 30.7 82 0.0018 31.3 4.9 19 201-219 130-148 (206)
127 PF07334 IFP_35_N: Interferon- 30.5 50 0.0011 27.9 2.8 18 242-259 4-21 (76)
128 cd00569 HTH_Hin_like Helix-tur 30.4 40 0.00086 21.4 1.9 37 140-181 5-41 (42)
129 cd04765 HTH_MlrA-like_sg2 Heli 30.2 53 0.0011 28.6 3.1 63 137-217 35-97 (99)
130 PF04545 Sigma70_r4: Sigma-70, 29.8 23 0.0005 26.4 0.7 37 140-181 4-40 (50)
131 PRK13922 rod shape-determining 29.7 84 0.0018 32.0 4.9 45 199-261 65-109 (276)
132 PRK10884 SH3 domain-containing 28.5 1.1E+02 0.0025 30.3 5.5 41 195-256 131-171 (206)
133 PF07106 TBPIP: Tat binding pr 28.4 1.2E+02 0.0025 28.7 5.4 71 177-259 55-130 (169)
134 PHA03162 hypothetical protein; 28.3 1.5E+02 0.0034 27.6 5.8 28 195-222 12-39 (135)
135 cd08861 OtcD1_ARO-CYC_like N-t 27.8 2.1E+02 0.0046 25.0 6.7 27 402-428 4-30 (142)
136 PF05494 Tol_Tol_Ttg2: Toluene 27.7 70 0.0015 30.1 3.7 56 434-494 85-140 (170)
137 smart00340 HALZ homeobox assoc 27.6 55 0.0012 24.7 2.2 26 194-219 3-28 (44)
138 KOG4196 bZIP transcription fac 26.7 90 0.0019 29.0 4.0 24 194-217 79-102 (135)
139 COG1792 MreC Cell shape-determ 24.7 1.1E+02 0.0024 31.8 4.8 42 202-261 65-106 (284)
140 PF07989 Microtub_assoc: Micro 24.6 1.8E+02 0.0039 24.3 5.2 59 196-260 7-65 (75)
141 PF00220 Hormone_4: Neurohypop 24.4 35 0.00075 17.7 0.5 9 513-521 1-9 (9)
142 PRK13169 DNA replication intia 24.3 2.8E+02 0.0061 25.0 6.6 25 240-264 31-55 (110)
143 PF00424 REV: REV protein (ant 24.3 1.1E+02 0.0024 26.8 3.9 37 146-196 14-50 (91)
144 PTZ00454 26S protease regulato 24.2 1.7E+02 0.0038 31.8 6.4 45 194-259 20-64 (398)
145 COG3413 Predicted DNA binding 23.7 66 0.0014 31.6 2.8 38 140-177 155-194 (215)
146 PF13936 HTH_38: Helix-turn-he 22.7 44 0.00096 24.7 1.1 37 138-179 2-38 (44)
147 cd04770 HTH_HMRTR Helix-Turn-H 22.6 2E+02 0.0042 25.6 5.4 35 137-184 35-69 (123)
148 PF10845 DUF2576: Protein of u 22.4 1.1E+02 0.0024 23.4 3.0 31 230-260 3-33 (48)
149 COG1675 TFA1 Transcription ini 22.3 85 0.0018 30.6 3.1 43 216-258 126-169 (176)
150 TIGR02209 ftsL_broad cell divi 22.3 2.6E+02 0.0057 22.9 5.8 13 254-266 60-72 (85)
151 TIGR02051 MerR Hg(II)-responsi 22.2 2.2E+02 0.0048 25.6 5.7 69 136-217 33-104 (124)
152 PRK02224 chromosome segregatio 21.9 3.3E+02 0.0071 32.3 8.6 16 220-235 450-465 (880)
153 PF04999 FtsL: Cell division p 21.8 2.3E+02 0.005 24.1 5.5 50 195-266 34-83 (97)
154 PRK03918 chromosome segregatio 21.6 2.6E+02 0.0056 33.1 7.6 13 221-233 435-447 (880)
155 cd04765 HTH_MlrA-like_sg2 Heli 21.6 22 0.00047 31.0 -0.9 21 164-184 3-23 (99)
156 cd07819 SRPBCC_2 Ligand-bindin 21.6 1.4E+02 0.003 25.8 4.2 39 401-443 6-44 (140)
157 cd04781 HTH_MerR-like_sg6 Heli 21.5 2.6E+02 0.0056 24.9 5.9 67 137-216 34-101 (120)
158 PF03364 Polyketide_cyc: Polyk 21.5 2.1E+02 0.0046 24.7 5.4 32 407-442 3-34 (130)
159 PRK09413 IS2 repressor TnpA; R 21.4 1.8E+02 0.0038 26.0 4.9 12 242-253 89-100 (121)
160 cd04783 HTH_MerR1 Helix-Turn-H 21.4 1.8E+02 0.0038 26.1 4.9 36 137-185 35-70 (126)
161 PF06005 DUF904: Protein of un 21.1 1.6E+02 0.0034 24.6 4.1 24 194-217 30-53 (72)
162 PF15294 Leu_zip: Leucine zipp 20.9 1.9E+02 0.0041 30.3 5.5 57 195-267 124-182 (278)
163 KOG0977 Nuclear envelope prote 20.8 2.3E+02 0.005 32.3 6.6 12 507-518 480-491 (546)
164 PF00196 GerE: Bacterial regul 20.8 44 0.00095 25.7 0.7 44 140-189 3-46 (58)
165 KOG2593 Transcription initiati 20.4 4.9E+02 0.011 28.9 8.7 125 139-266 53-198 (436)
166 PRK09642 RNA polymerase sigma 20.3 61 0.0013 29.5 1.7 48 141-193 107-154 (160)
167 PF10482 CtIP_N: Tumour-suppre 20.1 49 0.0011 30.1 1.0 32 198-229 44-75 (120)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.3e-78 Score=593.85 Aligned_cols=191 Identities=58% Similarity=0.977 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 009692 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (528)
Q Consensus 337 k~~~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (528)
|++|+|||++||+||++|||+++|||+++.+++ +|+||+|||.++|++..+.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999998887 6999999999999999999999999999999999999999999999
Q ss_pred cChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccC
Q 009692 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (528)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~ 496 (528)
||+++|.+|||+||++|+|++||++|++|+|||+|||||+|||+||||||+|||||||||||++||+|||||||||..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998853
Q ss_pred CCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 497 ~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.+..+.++||||+|||||||||+|||||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwV 191 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWV 191 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEE
Confidence 33344589999999999999999999999997
No 2
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.68 E-value=4.4e-17 Score=166.24 Aligned_cols=68 Identities=32% Similarity=0.430 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhh
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 198 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~ 198 (528)
..+|||+|..||..|+.+||+.|++.+|.+..+|++||+.|.|++.||||||||||-|.||+++.++.
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhh
Confidence 45667777789999999999999999999999999999999999999999999999999998876643
No 3
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.67 E-value=4.2e-17 Score=157.82 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=74.3
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHH
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~ 216 (528)
++.|||.+|+..||..|+...+....++..||++|||.+|||+|||||||||||.++.+.++..|+.+.+.|+.+|..+.
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 33479999999999999999999999999999999999999999999999999999999999999999999998755544
No 4
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.63 E-value=1.4e-16 Score=164.17 Aligned_cols=65 Identities=37% Similarity=0.480 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
.+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 169 pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 169 PKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 36778889999999999999999999999999999999999999999999999999999987765
No 5
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.62 E-value=4e-16 Score=150.39 Aligned_cols=65 Identities=34% Similarity=0.433 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
+.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+..-
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999999999987643
No 6
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.60 E-value=1.4e-16 Score=137.65 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
..|+||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.||+.+
T Consensus 14 krKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 14 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999997654
No 7
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=6.6e-16 Score=152.11 Aligned_cols=68 Identities=32% Similarity=0.457 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhh
Q 009692 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEN 205 (528)
Q Consensus 138 R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en 205 (528)
|+.||..|+++||+.|++.+||+...|+.||.++.|.+.+|+|||||||+||||+.++.-.....+|.
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maey 212 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEY 212 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhh
Confidence 77899999999999999999999999999999999999999999999999999999888766655544
No 8
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=2.7e-16 Score=158.87 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
.+.||.|+.||..|+.+||+.|+.++|.+...|.|||..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45688899999999999999999999999999999999999999999999999999999866543
No 9
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.58 E-value=7.3e-16 Score=157.41 Aligned_cols=65 Identities=38% Similarity=0.444 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
++-||||.-+|+.|+.+||+.|.-|.|.+.+.|.+|++.|+|++|||||||||||+|+||..++.
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 45577888899999999999999999999999999999999999999999999999999887654
No 10
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.58 E-value=7.6e-16 Score=144.98 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=61.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
+.||.|+.||.+|+..||..|+.++|-.-.+|++||+.|+|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 5688899999999999999999999999999999999999999999999999999999988775
No 11
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.57 E-value=1.1e-14 Score=139.68 Aligned_cols=164 Identities=24% Similarity=0.419 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCceecc--CCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh
Q 009692 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (528)
Q Consensus 342 elA~~Am~El~~~a~~~eplWi~~~--~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (528)
|+|.++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|.....++|+.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 6899999999999999999998865 332 1222332221 1146678899999999999999999998
Q ss_pred h-hHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccCCC
Q 009692 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (528)
Q Consensus 420 ~-~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~ 498 (528)
. +|-.++- .+.+++.|+.+ ..|..++.++..++|++| |||.++|++++..+|.|+|+..|+|.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 9999986 46888888865 578888899999999999 9999999999999999999999998654332
Q ss_pred CCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 499 GAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 499 ~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
....++|+..++||++|++.++|.|+||+|
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~ 167 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYV 167 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEE
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEE
Confidence 123479999999999999999999999985
No 12
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.56 E-value=7.6e-15 Score=145.34 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHh
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e 197 (528)
-+.|.|.|.+||..|..+||+.|..++|.++..+.|||.-|+|++|||||||||||+|+||..+++.
T Consensus 196 tRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 196 TRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 3445667888999999999999999999999999999999999999999999999999998776553
No 13
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.55 E-value=3.5e-15 Score=145.26 Aligned_cols=69 Identities=29% Similarity=0.393 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 127 DAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 127 ~~~~~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
-.++.+|.||.||.|+.-||+.|.+.|+++.|.-..+|.+||..|||+..||||||||||.|.||..+.
T Consensus 115 ~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~ 183 (245)
T KOG0850|consen 115 PNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQ 183 (245)
T ss_pred cCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhc
Confidence 345566778899999999999999999999999999999999999999999999999999999987763
No 14
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.51 E-value=1.4e-14 Score=139.06 Aligned_cols=64 Identities=39% Similarity=0.510 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.+..||.|+-||.+|+..||+.|++.+|.++.+|.+++..|.|++.||||||||||+|.||.++
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 3445788999999999999999999999999999999999999999999999999999998664
No 15
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.50 E-value=1e-14 Score=141.41 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
.+|+||.|++||-.|+++||.+|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 456788999999999999999999999999999999999999999999999999999999887665
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.50 E-value=6.9e-15 Score=114.52 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
||+|++||.+|+..||..|..++||+..++++||.++||++.||++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.42 E-value=2.1e-12 Score=124.10 Aligned_cols=160 Identities=31% Similarity=0.490 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhcCCCCCceeccC--CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhH-HHHHhcCh
Q 009692 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (528)
Q Consensus 343 lA~~Am~El~~~a~~~eplWi~~~~--~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~-LVe~lmD~ 419 (528)
-|+.++.|+++++..++..|....+ .+ ..+ |.+ + .+.+....+-|..++|-..+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~-----~~~-~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-DEV-----RSI-L------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-ceE-----EEE-c------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678889999999999999998764 22 111 112 1 1123567899999999999997 55677676
Q ss_pred ---hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccC
Q 009692 420 ---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (528)
Q Consensus 420 ---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~ 496 (528)
.+|-..| ..+++++.++.+ ..|......+.. +| |..|||.++|++++.++|.|+|+..|++.-..
T Consensus 69 ~~r~~Wd~~~----~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~ 136 (206)
T smart00234 69 RYRPEWDKNV----AKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS 136 (206)
T ss_pred cchhhCchhc----ccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC
Confidence 3444444 457888888754 233333333333 35 45599999999999999999999999985432
Q ss_pred CCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 497 ~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
+....++|...++||++|+++++|.|+|||+
T Consensus 137 -p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~ 167 (206)
T smart00234 137 -PPTSGYVRAENLPSGLLIEPLGNGPSKVTWV 167 (206)
T ss_pred -CCCCCceEEEEeceEEEEEECCCCCeEEEEE
Confidence 1123479999999999999999999999996
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.40 E-value=6.8e-13 Score=131.12 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
||.|+.||.+||+.|...|++++|.+...|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56688899999999999999999999999999999999999999999999999999754
No 19
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.34 E-value=4.1e-13 Score=103.66 Aligned_cols=55 Identities=45% Similarity=0.786 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 136 r~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
+.|++|+.+|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999999864
No 20
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.33 E-value=1.7e-12 Score=102.67 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCC----CCHHHHHHHHhhhCcccceEEEeecchh
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~----Ps~~~r~eLA~~LgLs~rQVkvWFQNRR 186 (528)
+||.|+.||++|+..||..|...+| |+...|.+||.++||++++|||||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 21
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.33 E-value=5.7e-13 Score=103.51 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 136 r~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
+.+..|+.+|+.+||..|..++||+..++.+||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 22
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.33 E-value=1e-12 Score=132.95 Aligned_cols=63 Identities=30% Similarity=0.523 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.|+||.|+.||.+|+++||..|++++||+...|++||...+|++.+|+|||.|||+||||+++
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrEr 172 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 172 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhh
Confidence 366778888999999999999999999999999999999999999999999999999997543
No 23
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.31 E-value=8.1e-13 Score=132.95 Aligned_cols=64 Identities=31% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
...-||.|+.||.|||..||+.|-+..|-+...|.|||..|+|.+..|||||||||+|+|||..
T Consensus 178 ~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 178 DDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 3455888999999999999999999999999999999999999999999999999999998653
No 24
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.31 E-value=1.2e-12 Score=122.88 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHh
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e 197 (528)
..+++|.|.|.+|+.+|++.|+.++||+...|.+|+..++|+++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778899999999999999999999999999999999999999999999999998776543
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.26 E-value=4e-13 Score=124.98 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHh
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e 197 (528)
+++|-|+.|+..|+..||+.|+..+|.+..+|.|||..|+|++.|||.||||||+|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45777899999999999999999999999999999999999999999999999999999887654
No 26
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.23 E-value=7e-12 Score=131.00 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
..||||||+.|+...+..||++|.+|++|+..++.+||.+|+|+...|+|||+|||.|+||-.
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999643
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.20 E-value=1.5e-11 Score=123.17 Aligned_cols=73 Identities=27% Similarity=0.410 Sum_probs=65.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhh
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEN 205 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en 205 (528)
..||.|+.+|..|++.|...|+..++|-...|++|+.++||..|.|||||||||+|+||.++..-...+-+-.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyf 238 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYF 238 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHH
Confidence 3488899999999999999999999999999999999999999999999999999999988776665554433
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.18 E-value=5.3e-12 Score=122.20 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
..+||..|..|+-.||..||..|+..+|+--..|.+||..+|+++.||+|||||||+||||+..
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 4566777888999999999999999999999999999999999999999999999999998664
No 29
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.03 E-value=1.7e-09 Score=101.37 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=116.7
Q ss_pred HHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChhhHhhh
Q 009692 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEM 425 (528)
Q Consensus 346 ~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~ 425 (528)
.|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ...+-|..++|-.++..++++|+|.+....-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4567788887766 6798764432 112244444221 3367788999999999999999994433322
Q ss_pred cccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccCCCCCCCccc
Q 009692 426 FPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVN 505 (528)
Q Consensus 426 Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~~~~~~~~ 505 (528)
.+ .+.++..++.++.+ .+++|..+..+.| +..|||.++|++.+.++|.++|+..|+|.-. .+....++|
T Consensus 68 ~~-~~~~~~vl~~~~~~--------~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 68 DK-NFEEFEVIEEIDEH--------TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred hh-cceEEEEEEEeCCC--------eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 22 23445666666532 6889999999999 9999999999999999999999999999731 121224789
Q ss_pred ccccCCcceeeecCCCccEEEEC
Q 009692 506 CRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 506 crr~PSGclIqdm~nGysKVtwv 528 (528)
++.+++|++|+++++|.|+|||+
T Consensus 137 ~~~~~~~~~i~~~~~~~~~vt~~ 159 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTKVTYV 159 (193)
T ss_pred EEEEccEEEEEECCCCCEEEEEE
Confidence 99999999999999999999985
No 30
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=99.03 E-value=1.3e-10 Score=113.60 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 3456778889999999999999999999999999999999999999999999999999997664
No 31
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.76 E-value=3.8e-09 Score=111.37 Aligned_cols=64 Identities=31% Similarity=0.532 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.++.+|.|+.|+..|+..||+.|+.++||+...|++||+++++++.+|++||+|||++++|+..
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 3445666789999999999999999999999999999999999999999999999999997653
No 32
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.72 E-value=1.7e-07 Score=91.87 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (528)
...|+++|++|++++-+ +.--|-.-.++. ..++ +.+ +...+..---|..|+|-.++.+|+|.|.|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~-~~~v--------~~k----~~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSK-KITV--------SWK----PSRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCC-ceEE--------EEE----EcCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 35789999999999987 567897654332 1111 111 012333456788999999999999999997
Q ss_pred hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhh-cccccccCceeeEEeeeeeecCCeEEEEEeeccCccCCC
Q 009692 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (528)
Q Consensus 420 ~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElq-vlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~ 498 (528)
+...+-=+ .+.....|+-|... ..+.|.-++ .+-++|-+|||..+||.++..+|.++|..+|++.-.- +
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id~~--------T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRIDSD--------TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeCCC--------cEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 65554444 34556777766532 245554332 4557899999999999999999999999999874321 2
Q ss_pred CCCCcccccccCCcceeeecCCC--ccEEEEC
Q 009692 499 GAPAFVNCRRLPSGCVVQDMPNG--YSKVIYY 528 (528)
Q Consensus 499 ~~~~~~~crr~PSGclIqdm~nG--ysKVtwv 528 (528)
....++|+.-.|+||+|++.+++ +|++||+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~ 170 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF 170 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 22348999999999999999874 9999995
No 33
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.66 E-value=3e-07 Score=89.44 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC-
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD- 418 (528)
+-.+|..|.+|++++.. .+.-|....+.. +.++|.+.. .++..-.-|..++|..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 45788899999999987 447897753321 112332211 122222357788888899999999998
Q ss_pred ----hhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhc-ccccccCceeeEEeeeeeecCCeEEEEEeeccC
Q 009692 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (528)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqv-lSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~ 493 (528)
+.+|...| ..+..++-|... ..++|-.+-- ..++|..|||.++||.++.++|.+.|+-+|++.
T Consensus 69 ~~~~r~~Wd~~~----~~~~~le~id~~--------~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKSL----KHYEVLEKISED--------LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Cccccccccccc----cceEEEEEeCCC--------eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 46787664 456777777522 2345542211 235799999999999999999999999999864
Q ss_pred ccCCCCCCCcccccccCCcceeeecC--CCccEEEEC
Q 009692 494 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVIYY 528 (528)
Q Consensus 494 ~~~~~~~~~~~~crr~PSGclIqdm~--nGysKVtwv 528 (528)
-. .+....++|....++|++|++.+ ++.|+|||+
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~ 172 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY 172 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE
Confidence 32 22223479999999999999876 578999996
No 34
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.57 E-value=4e-08 Score=98.99 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.-|||+|+.+..-+...||.+|...+.|+.+.+..+|++|.|....|+|||+|.|+|.||..
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 34677888999999999999999999999999999999999999999999999999998743
No 35
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.55 E-value=7.4e-07 Score=87.73 Aligned_cols=154 Identities=14% Similarity=0.233 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcCh---hh
Q 009692 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---NR 421 (528)
Q Consensus 346 ~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV-~m~~~~LVe~lmD~---~~ 421 (528)
+++++|+.++..+ .-|-...+.. . .++|.+.. .+...-.-|..+++ -..+..|.+.|+|. .+
T Consensus 10 ~~~~~~~~~~~~~-~~W~~~~~~~--g-------i~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 10 ADFEEFKKLCDST-DGWKLKYNKN--N-------VKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHhcCC-CCcEEEEcCC--C-------eEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 7788999999654 4798764432 1 13332221 22233345666655 46888999999996 66
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccCCCCCC
Q 009692 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAP 501 (528)
Q Consensus 422 W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~~~~ 501 (528)
|-..|- .+..|+.+.- ...++|..+..|-| |..|||.++|..+..+ |.++|+..|++.-. .+...
T Consensus 76 Wd~~~~----e~~~ie~~d~--------~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~~ 140 (222)
T cd08871 76 WDSNMI----ESFDICQLNP--------NNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPRK 140 (222)
T ss_pred hhhhhc----eeEEEEEcCC--------CCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCCC
Confidence 766652 3566666642 23678888888888 8999999999988766 88899999987432 12223
Q ss_pred CcccccccCCcceeeecCCCccEEEEC
Q 009692 502 AFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 502 ~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.++|.....+|++|++++++.|+|||+
T Consensus 141 g~VR~~~~~~g~~i~p~~~~~t~vt~~ 167 (222)
T cd08871 141 GFVRAISLLTGYLIRPTGPKGCTLTYV 167 (222)
T ss_pred CeEEeEEEccEEEEEECCCCCEEEEEE
Confidence 478999999999999998889999985
No 36
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.46 E-value=9.3e-07 Score=86.16 Aligned_cols=160 Identities=15% Similarity=0.204 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHH-hcC
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 418 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~-lmD 418 (528)
...++..|++|++.+.. ++-|-...+.. +...+|.+.. .| ..-.-|..++|-..+..+++. |+|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57889999999999954 56897654221 0112332221 12 114578889999999998764 555
Q ss_pred h---hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcc-cccccCceeeEEeeeeeecCCeEEEEEeeccCc
Q 009692 419 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (528)
Q Consensus 419 ~---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvl-SPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~ 494 (528)
. .+|-..|- .+..++.+.. ...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~~----~~~~i~~~d~--------~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTVL----ECKIIQVIDD--------NTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCccc----ceEEEEEecC--------CcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 4 66776663 2455565542 224455323222 3589999999999999866 7799999998732
Q ss_pred cCCCCCCCcccccccCCcceeeecCC--CccEEEEC
Q 009692 495 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVIYY 528 (528)
Q Consensus 495 ~~~~~~~~~~~crr~PSGclIqdm~n--GysKVtwv 528 (528)
. -+....++|....++|++|+++++ +.|+|||+
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~ 172 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL 172 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEE
Confidence 1 121234799999999999999987 68999985
No 37
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.41 E-value=1.5e-07 Score=94.51 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 141 fT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
|...-...|..+|..++||+..++.+||+.+||+..||-.||+|||+|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 55566789999999999999999999999999999999999999999998
No 38
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.34 E-value=4.5e-06 Score=81.85 Aligned_cols=160 Identities=15% Similarity=0.243 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (528)
..+++++|+++++.+-+ ++.-|-...+.. +.++|.+..... .| =.-|.-|+|-.++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~~~-~~---~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSAEF-AG---NLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecCCC-CC---cEEEEEEEecCCHHHHHHHHHhc
Confidence 46789999999999975 677897654321 223342211100 11 12678889999999999999976
Q ss_pred -----hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccc---cccCceeeEEeeeeeecCCeEEEEEeec
Q 009692 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (528)
Q Consensus 420 -----~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSP---LVP~Re~~FLRyckq~~~G~WaVvDVSl 491 (528)
.+|-..|-. ++.|+-|... ..+.|. ..+.| +|-.|||..+|+.++.++|.++|.-.|+
T Consensus 69 ~~~~r~~W~~~~~~----~~vle~id~~--------~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQNVKD----FEVVEAISDD--------VSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhcccc----EEEEEEecCC--------EEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 588888733 4666666622 222333 44555 6999999999999999999988777676
Q ss_pred cCccCCCCCCCcccccccCCcceeeecCC--CccEEEEC
Q 009692 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVIYY 528 (528)
Q Consensus 492 d~~~~~~~~~~~~~crr~PSGclIqdm~n--GysKVtwv 528 (528)
..-. -+....++|....|+|++|...++ +.|+|||+
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~ 172 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF 172 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 5311 111234899999999999999964 57999995
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.24 E-value=9.8e-06 Score=78.76 Aligned_cols=156 Identities=13% Similarity=0.243 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhcCCCCCceeccC-CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh-hhH
Q 009692 345 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (528)
Q Consensus 345 ~~Am~El~~~a~~~eplWi~~~~-~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~-~~W 422 (528)
+.+.++|++-+...+.-|....+ .| ..| |.|.. +.++..-+=|..++|--.+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999986532 23 222 22222 12445566788888888899999877764 456
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeee-ecCCeEEEEEeeccCccCCCCCC
Q 009692 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 501 (528)
Q Consensus 423 ~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq-~~~G~WaVvDVSld~~~~~~~~~ 501 (528)
-..| ..+..++.|+. ...+.|..+..+-| |+.|||..+|+++. .++|..+|.=.|++....-+ .
T Consensus 71 d~~~----~~~~vie~id~--------~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDDL----LQWKVVETLDE--------DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chhh----heEEEEEEecC--------CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 6665 34566666642 23467777777777 59999999999875 57889999989986321111 1
Q ss_pred CcccccccCCcceeeecCCCccEEEEC
Q 009692 502 AFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 502 ~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.++|.+.+++|++|++..+|.|+|||+
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~ 162 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHI 162 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEE
Confidence 489999999999999999999999986
No 40
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.18 E-value=1.5e-05 Score=78.42 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=89.5
Q ss_pred CCceeeeecceeEEechhHHH-HHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceee
Q 009692 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 471 (528)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LV-e~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~ 471 (528)
|...-+-|....|--.+..++ .+|-++..|-..| ..+++++.|. +-..+.|.-+.-+-|+ |.|+|+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~----~~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDF----LQWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhc----ceeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 344456676666666666664 4677788898887 3367766665 2234555555556675 999999
Q ss_pred EEeeeeee-cCCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 472 FLRFCKQH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 472 FLRyckq~-~~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.+|+-++. ++|.++|+..|++.....+ ..++|...+=+|++|+++++|.|+||+|
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i 170 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHI 170 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEE
Confidence 99997665 6999999999999764322 2478999999999999999999999985
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.07 E-value=1e-05 Score=91.18 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=93.9
Q ss_pred eeeecceeEEechhHHHHHhcChh----hHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhh--cccccccCcee
Q 009692 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 470 (528)
Q Consensus 397 EASR~sgvV~m~~~~LVe~lmD~~----~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElq--vlSPLVP~Re~ 470 (528)
-|=|+.|||-.++.+|+|.+|+.+ +|=..| ..++.|+.|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999777 776666 4467777663 55667776664 45566777999
Q ss_pred eEEeeeeeecCCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecC--C--CccEEEEC
Q 009692 471 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVIYY 528 (528)
Q Consensus 471 ~FLRyckq~~~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~--n--GysKVtwv 528 (528)
+++||-+..+||+++|+=+|+..-.-.+ ...++|....|.||+|.+++ + -+|.|||+
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP-~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~ 355 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGP-QPGFVRAHLESGGFNISPLKPRNGRPRTQVQHL 355 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCC-CCCeEEEEEeCCEEEEEECCCCCCCCceEEEEE
Confidence 9999999999999999999987432111 23489999999999999964 4 37999996
No 42
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=98.01 E-value=3.1e-06 Score=84.53 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHhh---cCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~---~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+|+|+.|+..-.++|..+|. .+|||+.+.+++||++++++..||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 55666899999999999994 589999999999999999999999999999999999744
No 43
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.94 E-value=3.3e-05 Score=75.79 Aligned_cols=159 Identities=13% Similarity=0.195 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCceecc--CCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 009692 339 MFLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (528)
Q Consensus 339 ~~~elA~~Am~El~~~a~~~eplWi~~~--~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (528)
-...++.+|++|++++.+ ++.-|-... +.| .++ |.+.||.. | -+-|.-++|-.++.+|++.|
T Consensus 5 ~y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g--i~v----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l 68 (209)
T cd08905 5 SYIKQGEEALQKSLSILQ-DQEGWKTEIVAENG--DKV----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSEL 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCCEEEEecCCC--CEE----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHH
Confidence 357899999999999986 666897652 223 111 23333221 1 45566678999999999555
Q ss_pred c-Ch---hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccc--cccCceeeEEeeeeeecCCeEEEEEee
Q 009692 417 M-DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVS 490 (528)
Q Consensus 417 m-D~---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSP--LVP~Re~~FLRyckq~~~G~WaVvDVS 490 (528)
. |. .+|...+-. +..++.|+.. .-++|. ...+.| +|-.|||..+|+.++..++. +++..|
T Consensus 69 ~~d~e~~~~W~~~~~~----~~vl~~id~~--------~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s 134 (209)
T cd08905 69 VDRMEQMGEWNPNVKE----VKILQRIGKD--------TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMA 134 (209)
T ss_pred HhchhhhceecccchH----HHHHhhcCCC--------ceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEe
Confidence 5 53 566666532 3444444421 234564 556665 79999999999999986655 455666
Q ss_pred ccCccCCCCCCCcccccccCCcceeeecCC--CccEEEEC
Q 009692 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVIYY 528 (528)
Q Consensus 491 ld~~~~~~~~~~~~~crr~PSGclIqdm~n--GysKVtwv 528 (528)
.+.-. -+....++|.+..+.|++|+++++ |.++|||+
T Consensus 135 ~~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~ 173 (209)
T cd08905 135 THFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL 173 (209)
T ss_pred ecCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE
Confidence 54321 111234899999999999999988 99999995
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=97.82 E-value=0.00014 Score=71.20 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCC-CCCCceeeeecceeEEechhHHHHHhcC
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~-~~g~~~EASR~sgvV~m~~~~LVe~lmD 418 (528)
...+|.++-++|++--+.++-.|-.-.+.+ ..+. ..+ ..-|..---|.-|+|--....||+.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~-~~~v-------------~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSK-DVTV-------------WRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCC-CEEE-------------EEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 456788888899998888999997653322 1121 112 1233344556677888889999999988
Q ss_pred ---hhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCcc
Q 009692 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 495 (528)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~ 495 (528)
+.+|=+.+ ..+..|+-|.-. ++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..+=||++.-.
T Consensus 69 ~~~r~~Wd~~v----~~~~Iie~Id~d-------t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSLM----TSMDIIEEFEEN-------CCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccchh----hheeHhhhhcCC-------cEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 44898765 445666655532 2221144445667799999999999999999998 77788887543
Q ss_pred CCCCCCCcccccccCCcceeeecCCC--ccEEEEC
Q 009692 496 ETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVIYY 528 (528)
Q Consensus 496 ~~~~~~~~~~crr~PSGclIqdm~nG--ysKVtwv 528 (528)
. ++.++|....|.||++.+.+|| +|+.||+
T Consensus 137 ~---ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~ 168 (202)
T cd08902 137 A---RPNFVRGFNHPCGWFCVPLKDNPSHSLLTGY 168 (202)
T ss_pred C---CCCeEeecccccEEEEEECCCCCCceEEEEE
Confidence 2 2258999999999999999998 6777884
No 45
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.78 E-value=3.5e-06 Score=61.97 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHhhhCcccceEEEeecchhhH
Q 009692 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (528)
Q Consensus 155 ~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak 188 (528)
.+|||+..++.+||+++||+..||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999875
No 46
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.77 E-value=0.00021 Score=70.30 Aligned_cols=162 Identities=10% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCceec-cC-CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHH-HH
Q 009692 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (528)
Q Consensus 339 ~~~elA~~Am~El~~~a~~~eplWi~~-~~-~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~ 415 (528)
-....+.+||+++.++... +.-|.-. .+ .| . ++|.+........| |.-++|-..+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g-i---------~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG-D---------TVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC-C---------EEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 4677899999999999865 4579853 22 34 1 23322211011233 55567777888885 68
Q ss_pred hcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccc--cccCceeeEEeeeeeecCCeEEEEEeeccC
Q 009692 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (528)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSP--LVP~Re~~FLRyckq~~~G~WaVvDVSld~ 493 (528)
|.|.+...+=.+.+ ..+..|+-|+.. .-+.| .+-.|.+ .|-.|||-.+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~~--------~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDDN--------TLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccCC--------cEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88887665555553 334555544421 13456 5555553 6899999999999998888 5777788763
Q ss_pred ccCCCCCCCcccccccCCcceeeec--CCCccEEEEC
Q 009692 494 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVIYY 528 (528)
Q Consensus 494 ~~~~~~~~~~~~crr~PSGclIqdm--~nGysKVtwv 528 (528)
-. -+....++|.+..++|++|+.. .+|.|+|||+
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~ 173 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWI 173 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 31 1112348999999999999985 5779999996
No 47
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.74 E-value=1.5e-05 Score=86.86 Aligned_cols=60 Identities=28% Similarity=0.309 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
..+.||.|.+||..|...|..+|+++++|+.+..+.|+.+|+|...-|..||-|-|.|.+
T Consensus 417 ~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 417 MLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred cccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 445678899999999999999999999999999999999999999999999999998863
No 48
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.62 E-value=4.2e-05 Score=74.81 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
..+.++.|+.++..|+..++..|...++|+...+.+|+..++++++.|++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 3456777888999999999999999999999999999999999999999999999999997654
No 49
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.60 E-value=0.00056 Score=67.36 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhcCCCCCceecc-CCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhc-Chhh
Q 009692 344 ALAAMDELVKMAQTDEPLWIRSF-EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM-DPNR 421 (528)
Q Consensus 344 A~~Am~El~~~a~~~eplWi~~~-~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lm-D~~~ 421 (528)
-+..+++|++.|..--=-|+.-. ..+ .|+. |.| +..|-..-.=|..+.+--.+..|+..|+ |+.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Eec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 34777888888865444565521 111 2222 112 2234444556666667777778775554 4577
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeee-eecCCeEEEEEeeccCccCCCCC
Q 009692 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (528)
Q Consensus 422 W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyck-q~~~G~WaVvDVSld~~~~~~~~ 500 (528)
|-..+ ..+++|+-|+... .+.|-.+..|-| +|.|||.++|..+ +.++|..+|+-.|++.-. . +
T Consensus 78 Wd~~~----~e~~vIe~ld~~~--------~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~--~-P 141 (204)
T cd08908 78 WDVDL----LDSKVIEILDSQT--------EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR--A-P 141 (204)
T ss_pred HHHHh----hheEeeEecCCCc--------eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc--C-C
Confidence 88877 3467777776322 467777788888 7999999997766 478999999999988432 1 1
Q ss_pred CCcccccccCCcceeeecCCCccEEEEC
Q 009692 501 PAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 501 ~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
...+|.+.+-+|.+|++..+|.|+||.+
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~vtyi 169 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSKLTYM 169 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEEEEEE
Confidence 2268999999999999999999999974
No 50
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.51 E-value=0.0004 Score=68.14 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=98.3
Q ss_pred HHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChh---hHhhhc
Q 009692 351 LVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMF 426 (528)
Q Consensus 351 l~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~---~W~~~F 426 (528)
++..-+.+.+-|-...+.. . .++|.+.. .|...-.=|..+++. +.+..|+++|+|.+ +|...+
T Consensus 16 ~~~~~~~~~~~W~l~~~~~--~-------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~ 82 (207)
T cd08910 16 ELQQPALDGAAWELLVESS--G-------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV 82 (207)
T ss_pred HhcCCCCCCCCeEEEEecC--C-------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 3455556667898765432 1 12332221 222233677778887 78999999999965 566654
Q ss_pred ccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeee-eecCC--eEEEEEeeccCccCCCCCCCc
Q 009692 427 PCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEG--VWAVVDVSIDTIRETSGAPAF 503 (528)
Q Consensus 427 p~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyck-q~~~G--~WaVvDVSld~~~~~~~~~~~ 503 (528)
-. .++.++. + ..++|-.+..|-| |..||+.++|-.. ...+| .|+|+.-|++.- .-+....+
T Consensus 83 ~~------~~~~~~~-------~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~ 146 (207)
T cd08910 83 KE------LYEKECD-------G-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGV 146 (207)
T ss_pred Hh------heeecCC-------C-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCC
Confidence 22 2333322 2 2567888999999 9999999996444 33344 689888877632 11222348
Q ss_pred ccccccCCcceeeecCCCccEEEEC
Q 009692 504 VNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 504 ~~crr~PSGclIqdm~nGysKVtwv 528 (528)
+|....-+|.+|++..++.|+||++
T Consensus 147 VRv~~~~~~~~i~p~~~~~t~i~~~ 171 (207)
T cd08910 147 IRVKQYKQSLAIESDGKKGSKVFMY 171 (207)
T ss_pred EEEEEEEEEEEEEeCCCCceEEEEE
Confidence 9999999999999998888999874
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.39 E-value=0.00078 Score=66.04 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh
Q 009692 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~lmD~ 419 (528)
+++=+...|+|+.+..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|+|--+...++.+|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566889999998876 55698764331 223332211 1222467788888988999999999999
Q ss_pred hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEE-eeeeee-cCCeEEEEEeeccCccC-
Q 009692 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 496 (528)
Q Consensus 420 ~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FL-Ryckq~-~~G~WaVvDVSld~~~~- 496 (528)
+...+-+|.. ..+..++.++-. -++.|-.+-+|-| |-.||+.+. +.|.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~~--------~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGRA--------DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCCc--------eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8888777763 445666655422 2566766666777 888999975 567777 89999999999984322
Q ss_pred -------CCCCC-CcccccccCCcceeeecCCCccEEEEC
Q 009692 497 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 497 -------~~~~~-~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
-+... .++|....-+|.+|+++++|-++|+++
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~ 178 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFV 178 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEE
Confidence 12223 578889999999999999999999974
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.25 E-value=0.00081 Score=66.12 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcCCCCCceeccCC-CcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhh
Q 009692 344 ALAAMDELVKMAQTDEPLWIRSFEG-SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (528)
Q Consensus 344 A~~Am~El~~~a~~~eplWi~~~~~-g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~~ 421 (528)
-+..+++|++-+....=-|+...+. + .|+- .+.-+. |...--=|.+.-|- ..+.-|-++|.|+..
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~-vev~-----~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~ 77 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDN-TELA-----CKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHL 77 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCC-cEEE-----EEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhh
Confidence 3478889999998777789874322 2 3333 111111 11111112222222 244556699999999
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeee-eecCCeEEEEEeeccCccCCCCC
Q 009692 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (528)
Q Consensus 422 W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyck-q~~~G~WaVvDVSld~~~~~~~~ 500 (528)
|=+.+ -...+|+.|.--. -..|.. +.-| +.+|.|+|.+||.=+ .+..|.-+|+.+||+....-+
T Consensus 78 WD~~m----~e~~~Ie~Ld~n~-----dI~yY~---~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-- 142 (205)
T cd08907 78 WDEDL----LHSQVIEALENNT-----EVYHYV---TDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-- 142 (205)
T ss_pred hhHHH----HhhhhheeecCCC-----EEEEEE---ecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC--
Confidence 99887 4468888886221 111211 1122 568999999999864 467789999999998654322
Q ss_pred CCcccccccCCcceeeecCCCccEEEEC
Q 009692 501 PAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 501 ~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
..-+|.--+=||+||+++..|.|+||-|
T Consensus 143 ~~gVRa~~l~sgYlIep~g~g~s~ltyi 170 (205)
T cd08907 143 EAGVRAVLLTSQYLIEPCGMGRSRLTHI 170 (205)
T ss_pred CCCeEEEEEeccEEEEECCCCCeEEEEE
Confidence 1138899999999999999999999964
No 53
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.24 E-value=0.0012 Score=64.93 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=81.1
Q ss_pred CCCCCceeeeecceeEEechhHHHHHhcChh---hHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhccccc-c
Q 009692 390 KPNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPL-V 465 (528)
Q Consensus 390 ~~~g~~~EASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPL-V 465 (528)
...+|+.| ++|-..+..|++.|.|.. +|-.++ .+.+||..-. ....++|..+..|=|+ +
T Consensus 43 ~~~~~~ge-----~~v~as~~~v~~ll~D~~~r~~Wd~~~-------~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~ 105 (205)
T cd08874 43 TYHGFLGA-----GVIKAPLATVWKAVKDPRTRFLYDTMI-------KTARIHKTFT-----EDICLVYLVHETPLCLLK 105 (205)
T ss_pred CcceEEEE-----EEEcCCHHHHHHHHhCcchhhhhHHhh-------hheeeeeecC-----CCeEEEEEEecCCCCCCC
Confidence 33566643 477888999999999975 566655 4455555322 2335666666555544 3
Q ss_pred cCceeeEEeeeeeecCCeEEEEEeeccC-ccCCCCCCCcccccccCCcceeeec---CCCccEEEEC
Q 009692 466 PVREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVIYY 528 (528)
Q Consensus 466 P~Re~~FLRyckq~~~G~WaVvDVSld~-~~~~~~~~~~~~crr~PSGclIqdm---~nGysKVtwv 528 (528)
+.|||..+|-....+++.. |.=.|++. ..+.. ...++|.+.+++|++|+++ ++|.|+||.+
T Consensus 106 ~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~ 170 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYI 170 (205)
T ss_pred CCCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEE
Confidence 9999999985555555544 65566664 22111 1147999999999999999 9999999964
No 54
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.94 E-value=0.00077 Score=79.98 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.+++.|++++..|+..+..+|....||...+.+.|...+++..+.|++||||-|+|.|+..+
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 45777899999999999999999999999999999999999999999999999999998665
No 55
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=96.68 E-value=0.021 Score=57.42 Aligned_cols=161 Identities=15% Similarity=0.251 Sum_probs=99.8
Q ss_pred HHHHHHHHhhcC--CCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhhH
Q 009692 346 AAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNRW 422 (528)
Q Consensus 346 ~Am~El~~~a~~--~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~lmD~~~W 422 (528)
+-.+|.+++|+. ++.-|--..+.+ + .++|.+... ..|+....=|+.++|. ..+..|.+.|.|.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~W~l~~~~~--g-------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r 78 (235)
T cd08872 10 EKVQEQLTYALEDVGADGWQLFAEEG--E-------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVR 78 (235)
T ss_pred HHHHHHHHHHHccCCCCCCEEEEeCC--c-------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChhhH
Confidence 556788999865 555797654332 1 134433221 1244455678888888 8899999999998644
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecC-------CeEEEEEeeccCcc
Q 009692 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTIR 495 (528)
Q Consensus 423 ~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~-------G~WaVvDVSld~~~ 495 (528)
.+=...+ ..+..|+-|+. ...+.|..+-.|=| +-.|||.|+|+-++.++ +.|+|+..|++.-.
T Consensus 79 ~~Wd~~~-~~~~vie~l~~--------~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~ 148 (235)
T cd08872 79 MDWETTL-ENFHVVETLSQ--------DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDS 148 (235)
T ss_pred HHHHhhh-heeEEEEecCC--------CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCcc
Confidence 4333221 22444454442 22456777777888 69999999999998776 78999999977421
Q ss_pred CCCCCCCcccccc---cCCcceeee------c--CCCccEEEEC
Q 009692 496 ETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVIYY 528 (528)
Q Consensus 496 ~~~~~~~~~~crr---~PSGclIqd------m--~nGysKVtwv 528 (528)
-+....++|.+. +=.|.+|.+ + .||-|+||++
T Consensus 149 -~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~ 191 (235)
T cd08872 149 -APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYV 191 (235)
T ss_pred -CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEE
Confidence 111123566554 222333332 1 4788999975
No 56
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.66 E-value=0.011 Score=56.42 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=81.6
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeee
Q 009692 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (528)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyck 477 (528)
.-|.+++|-.++..+.++++|.+.|.+-=|.+ ...+||..... + -.++|..+..+=| |..|||.+++...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~----~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC----KESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc----ceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 45888889999999999999998887666654 33445543221 1 2445554554444 7889999876443
Q ss_pred ee-cCCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 478 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 478 q~-~~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.. .+|..+|.=.|++.-. +....++|.+.+-+|..|++.++|-|+||++
T Consensus 112 ~~~~~~~~~i~~~s~~~~~--P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~ 161 (195)
T cd08876 112 QDADDGSVTITLEAAPEAL--PEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ 161 (195)
T ss_pred EcCCCCEEEEEeecCCccC--CCCCCeEEceeceeeEEEEECCCCeEEEEEE
Confidence 33 3677766666665421 1112478899999999999999999999974
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.26 E-value=0.039 Score=54.05 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=102.3
Q ss_pred HHHHHhhcCCC--CCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcChh---hH
Q 009692 349 DELVKMAQTDE--PLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPN---RW 422 (528)
Q Consensus 349 ~El~~~a~~~e--plWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV-~m~~~~LVe~lmD~~---~W 422 (528)
+||+.+.+.+. .-|-..++.. .+-....-|.|.. .|...-.=|..+++ -+++..|.+.|+|.+ +|
T Consensus 9 ~~~~~~~~~~~~~~~W~~~~~k~-~~~~~i~vy~r~~--------~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W 79 (209)
T cd08870 9 RDLVQELQEGAEGQAWQQVMDKS-TPDMSYQAWRRKP--------KGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW 79 (209)
T ss_pred HHHHHHhcCcCCCCcceEhhhcc-CCCceEEEEeccc--------CCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh
Confidence 45666655443 4697765432 0111122233322 22223456777777 469999999999965 56
Q ss_pred hhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCccCCCCCCC
Q 009692 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPA 502 (528)
Q Consensus 423 ~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~~~~~ 502 (528)
-..|- .+..++.... .| ..++|-.+..|-|| -.||+.+.|-..+..+|..+|+=-|++.-. .+.. .
T Consensus 80 d~~~~----~~~~le~~~~------~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~ 145 (209)
T cd08870 80 DETVI----EHETLEEDEK------SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPS-VPRS-G 145 (209)
T ss_pred hhhee----eEEEEEecCC------CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCC-CCCC-C
Confidence 66552 2344444221 02 46899999999988 899999998777777999988888877421 1111 4
Q ss_pred cccccccCCcceeeec--CCCccEEEE
Q 009692 503 FVNCRRLPSGCVVQDM--PNGYSKVIY 527 (528)
Q Consensus 503 ~~~crr~PSGclIqdm--~nGysKVtw 527 (528)
++|.+..=||++|+.. .+|.++|++
T Consensus 146 ~vRv~~~~~~~~i~p~~~~~~~t~~~~ 172 (209)
T cd08870 146 RKRVDDYESSLVIRAVKGDGQGSACEV 172 (209)
T ss_pred cEEEEEEEeEEEEEEecCCCCceEEEE
Confidence 7899999999999999 788888875
No 58
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.74 E-value=0.0078 Score=63.23 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
++|++..+..+...+|+.+..+ .+||+..++..|++++||+..||..||-|.|-|..+-....
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~~ 304 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIEE 304 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHHH
Confidence 4555567899999999987533 68999999999999999999999999999999877655544
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.66 E-value=0.057 Score=52.93 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=82.1
Q ss_pred eeecceeE-EechhHHHHHhcChh---hHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEE
Q 009692 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (528)
Q Consensus 398 ASR~sgvV-~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FL 473 (528)
.=|..+++ -..+..|++.|+|.+ +|-..+ .-.++|.-.. +-...++|..+..|-|| -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-------~~~~~le~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-------VELEVVDEDP----ETGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-------eeEEEEEccC----CCCCEEEEEEEECCCCC-CCccEEEE
Confidence 45665544 688899999999985 565554 2234444321 11236789999999886 89999998
Q ss_pred eeeeeec-CCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecC---CCccEEEE
Q 009692 474 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVIY 527 (528)
Q Consensus 474 Ryckq~~-~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~---nGysKVtw 527 (528)
|-..+.. +|.++|+--|++.-. .+....++|.....+|++|+... ++.++|++
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~ 170 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVL 170 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEE
Confidence 8876664 577888888887421 11122479999999999999983 55688876
No 60
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.08 E-value=0.11 Score=52.42 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=79.6
Q ss_pred CCceeeeecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeE
Q 009692 393 GFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (528)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~F 472 (528)
.|++|+. |-..+..|++.|.|.+...+=.+.+ ..+..|+-|+. ...++|..+..|. -+..|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~~~-~e~evI~~id~--------d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDPHG-RSCEEVKRVGE--------DDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhhcc-cEEEEEEEeCC--------CcEEEEEEcCCCC-CCCCceEEE
Confidence 4556654 7889999999999986544443322 22344444432 2245554444444 488999999
Q ss_pred EeeeeeecCC--eEEEEEeecc--CccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 473 LRFCKQHAEG--VWAVVDVSID--TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 473 LRyckq~~~G--~WaVvDVSld--~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
+|+-++..++ ..+|.=-|+. .+.+. ..++|.+.+=.|.+|++..+|-|+||.+
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~---kgyVR~~~~~ggW~I~p~~~~~t~VtY~ 199 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRVPQT---PGYSRTEVACAGFVIRQDCGTCTEVSYY 199 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccCCCC---CCeEEEEEEeeeEEEEECCCCcEEEEEE
Confidence 9999984443 3766655544 33222 2489999999999999999999999974
No 61
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=94.58 E-value=0.23 Score=50.21 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=73.4
Q ss_pred eeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhccc-c---cccCceeeEEeeeee
Q 009692 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-P---LVPVREVNFLRFCKQ 478 (528)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlS-P---LVP~Re~~FLRyckq 478 (528)
++|-..+..|++.|.|.+...+=.+.+ ..+..|+-|+-. . . . .|+.+ | -|..|||-.++.-.+
T Consensus 87 ~~vd~s~e~v~~lL~D~~~r~~Wd~~~-~e~~vIe~id~~-------~-~-v---Y~v~~~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 87 MVVHVDAAQAFLLLSDLRRRPEWDKHY-RSCELVQQVDED-------D-A-I---YHVTSPSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEcCCHHHHHHHHhChhhhhhhHhhc-cEEEEEEecCCC-------c-E-E---EEEecCCCCCCCCCCeEEEEEEEEe
Confidence 688889999999999987655544443 223444444421 1 1 1 22332 2 588999999988866
Q ss_pred ecC-C-eEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 479 HAE-G-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 479 ~~~-G-~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
..+ | .++|+=.|+..-. -+....++|.+.+..|.+|++..+|.|+||++
T Consensus 154 ~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~ 204 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYY 204 (240)
T ss_pred ccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEE
Confidence 544 4 3545444433211 12123489999999999999999999999985
No 62
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.21 E-value=0.0083 Score=47.38 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchh
Q 009692 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (528)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRR 186 (528)
.++.|++.|...+++...+...|..+.+|+..||+.||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 457799999999999999999999999999999999996554
No 63
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=93.36 E-value=0.16 Score=45.68 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCCCHHHHH-HHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeec
Q 009692 138 YHRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 138 R~rfT~eQl~-~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
|.+||.++.. ++...+... ....++|+++|+++.+|..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3457776644 444444432 2456789999999999999954
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.67 E-value=0.78 Score=46.40 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhccc-ccccCceeeEEeee
Q 009692 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 476 (528)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlS-PLVP~Re~~FLRyc 476 (528)
+-|.-..|-..+..|++.|.|.+...+=.+.+ ..+..|+-++-.. . +|...-.|= | |..|||-++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~-~e~~vI~qld~~~--------~-vY~~~~pPw~P-vk~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF-LSCEVIDWVSEDD--------Q-IYHITCPIVNN-DKPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh-ceEEEEEEeCCCc--------C-EEEEecCCCCC-CCCceEEEEEEE
Confidence 33444477889999999999987555444332 2234555444211 1 344332222 3 488999998776
Q ss_pred eeec-CCe-EEEEEeeccC-ccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 477 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 477 kq~~-~G~-WaVvDVSld~-~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.+.. +|. ++|.=-|+.. ..+. ...++|.+.+=+|.+|++..+|-|+||.+
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~Pp--~kg~VRv~~~~~G~~I~pl~~~~~~VtY~ 200 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVPP--SPQYIRSEIICAGFLIHAIDSNSCTVSYF 200 (236)
T ss_pred EecCCCCCEEEEEEeecccccCCC--CCCcEEeEEEEEEEEEEEcCCCcEEEEEE
Confidence 6666 885 8887777664 2221 12478888888999999999999999973
No 65
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=90.55 E-value=1.2 Score=41.04 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhh-CcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~L-gLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e 217 (528)
.+|+.+++..| .-.+|=+.| |++...|-.|=|.||+-.-|-.........-++-+.|..++..|..
T Consensus 22 d~lsDd~Lvsm-------------SVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM-------------SVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh-------------hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887765 122344444 7888888889899988665544444444333444555566555554
Q ss_pred hhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHh
Q 009692 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 218 ~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 258 (528)
+..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888887543
No 66
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=87.69 E-value=3.8 Score=41.44 Aligned_cols=38 Identities=34% Similarity=0.396 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHH--hhHHHHHhhHHHHhhhhhHHhhhc
Q 009692 183 QNRRTQMKTQLERH--ENSLLRQENDKLRAENMSIRDAMR 220 (528)
Q Consensus 183 QNRRak~Kr~~~r~--e~~~l~~en~~L~~en~~l~e~~~ 220 (528)
|+-|-|.|-+..+. +-..|..+|++|+.||++|++..+
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655555444 445577888888988888888765
No 67
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=85.50 E-value=0.36 Score=55.17 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
...|...|..|..|+..+-..+|.+.||..+.|+.||+++++.....+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhc
Confidence 678899999999999999999999999999999999999998876533
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.96 E-value=2.7 Score=35.01 Aligned_cols=51 Identities=33% Similarity=0.549 Sum_probs=36.6
Q ss_pred HHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH----HHhhhhhhc
Q 009692 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 264 (528)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~----r~~~~~~~~ 264 (528)
+.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++++|+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556778888888888888875 44568899999999875 566665553
No 69
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=84.59 E-value=0.59 Score=36.28 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecch
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNR 185 (528)
||+|..+|.+|...+-..++... ...+||+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46677899988888888888776 57789999999999999998875
No 70
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.40 E-value=3.5 Score=34.89 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=41.7
Q ss_pred HHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH----HHhhhhhh
Q 009692 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (528)
Q Consensus 190 Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~----r~~~~~~~ 263 (528)
|-++.-..-..|+-+.+.|+++|..+.+..... ......|..||.+||+|.. |++++++|
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~--------------~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------QHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556677788888888888888866421 1234468999999999974 67776655
No 71
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=83.26 E-value=3 Score=41.28 Aligned_cols=90 Identities=19% Similarity=0.100 Sum_probs=62.5
Q ss_pred ceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEee-eeeecC-CeEEEEEeeccCccCCCCCCCcccccccC
Q 009692 433 TATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRLP 510 (528)
Q Consensus 433 a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRy-ckq~~~-G~WaVvDVSld~~~~~~~~~~~~~crr~P 510 (528)
+..++++..+. ++...+.|...++|-| +..|+|..|.. +.+.+. ..++||.++++.-........++|.+ -=
T Consensus 77 ~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~ 150 (208)
T cd08864 77 LEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YA 150 (208)
T ss_pred eEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EE
Confidence 45566655333 2356778888888888 89999999999 666652 57899999987432110112367776 67
Q ss_pred CcceeeecCC---CccEEEEC
Q 009692 511 SGCVVQDMPN---GYSKVIYY 528 (528)
Q Consensus 511 SGclIqdm~n---GysKVtwv 528 (528)
||-.|+..|. +-.+|+|+
T Consensus 151 SgE~~~~~p~~~~~~~~vew~ 171 (208)
T cd08864 151 SVEKISYLPDADGKSNKVEWI 171 (208)
T ss_pred EEEEEEEcCccCCCcCCEEEE
Confidence 9989998885 46789995
No 72
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=82.70 E-value=1.8 Score=44.90 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=27.7
Q ss_pred hhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH
Q 009692 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (528)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~ 255 (528)
+...+++||++|+.|+..+++++. ...+.|+.||++||+.|+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 334566777777777777755442 123348889999998775
No 73
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.63 E-value=5.7 Score=32.94 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=37.0
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHH----HHHhhhhhhc
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el----~r~~~~~~~~ 264 (528)
.-..-..|+-+.+.|+++|..+.....++ .-...-|..||..||+|- +|++++++|+
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~--------------q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNA--------------QHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344556667788888887776654311 123335888999999996 5777776653
No 74
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.51 E-value=3 Score=42.54 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=26.4
Q ss_pred hhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH
Q 009692 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (528)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~ 255 (528)
....+++||++|++|+..++..+. +.+.|+.||.+||+.|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhc
Confidence 344566666666666666665543 44467788888888664
No 75
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.43 E-value=5.3 Score=30.30 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=28.6
Q ss_pred HHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
+.+.++..|++..+.|++++.+ |..||..|+.|+.++..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~----------------------------L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDS----------------------------LKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 4567788888888888886555 44577778888777654
No 76
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.53 E-value=9.3 Score=45.21 Aligned_cols=55 Identities=29% Similarity=0.364 Sum_probs=40.0
Q ss_pred HHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhh
Q 009692 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (528)
Q Consensus 200 ~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 260 (528)
.++..++.|..+..-|+++|.+- |+ ...+..+++..||..+|+|||+-|-|++.+
T Consensus 336 ~lkEr~deletdlEILKaEmeek-----G~-~~~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK-----GS-DGQAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CC-CCcccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666667788888866 33 333445789999999999999999988764
No 77
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=74.20 E-value=6.7 Score=43.85 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=14.7
Q ss_pred cCCCCCceeccCCCcccccChhhhhhh
Q 009692 356 QTDEPLWIRSFEGSGRQVLNHEEYLRT 382 (528)
Q Consensus 356 ~~~eplWi~~~~~g~~e~Ln~~eY~~~ 382 (528)
...++|.+.+.+ . +-..|.-||.+.
T Consensus 439 ne~p~L~~~s~d-c-r~~~n~te~~~l 463 (655)
T KOG4343|consen 439 NEEPLLYIPSPD-C-RPLINTTESLRL 463 (655)
T ss_pred cCCCceeccCcc-c-hhhhhhhhhhhh
Confidence 456667776543 2 346666677665
No 78
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=73.80 E-value=0.43 Score=38.62 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=27.0
Q ss_pred CCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHhhhCcccceEEEee
Q 009692 136 KRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWF 182 (528)
Q Consensus 136 r~R~rfT~eQl~~LE~~F-~~~~~Ps~~~r~eLA~~LgLs~rQVkvWF 182 (528)
++|++||+++...+-..+ .. .....++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~~-----g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLES-----GESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHHH-----HCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCceEeeecccccccccccHHH
Confidence 355679998877766655 32 2467889999999999988884
No 79
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=73.78 E-value=8 Score=33.36 Aligned_cols=43 Identities=30% Similarity=0.509 Sum_probs=29.4
Q ss_pred HhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhh
Q 009692 203 QENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (528)
Q Consensus 203 ~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 260 (528)
+++..|+.|.+-|++.+. ...+.-+..+||.+|++|+.|+..+
T Consensus 24 ~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666665543 2345667889999999999998765
No 80
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.65 E-value=8.6 Score=42.57 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 192 QLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 192 ~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
+....+|+.|++||++|+.....+.+.+.... .-+.++|..|-..|++|+.++..
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av-------------~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAV-------------QSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444333332111 12334455555556666555444
No 81
>smart00338 BRLZ basic region leucin zipper.
Probab=63.90 E-value=28 Score=27.71 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=26.4
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHH
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el 254 (528)
++.....|..+...|..+|..|+..+ .+|..|+..|++++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 34455566777777777777777643 35677777777765
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.34 E-value=17 Score=36.64 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHh
Q 009692 188 QMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 188 k~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 258 (528)
|.|-+....++..|..+++.|.++...+++.+ .+|+.||++|.+++.++-
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhch
Confidence 34445556667777777777777777777654 368888888888876643
No 83
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=61.14 E-value=8.7 Score=40.94 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=32.2
Q ss_pred HhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHH--hhhhhhccCCC
Q 009692 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV--CALAGKFLGRP 268 (528)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~--~~~~~~~~~~~ 268 (528)
.....+++||++|++||..|++.+. +.+.++.||++|++.+... .-++++.+++.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~~~~~~~i~ArVI~r~ 113 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILSPYFQKLIMGRVIFRD 113 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhcccccceEEEEEEEeC
Confidence 3445666777777777777766553 3445667888877655432 22344445444
No 84
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=60.90 E-value=3.9 Score=49.94 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhh
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMS 214 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~ 214 (528)
+-.+++++.-|...|..+|+...||.-.++..+++-|++..|.+-.||+++++++.+...+. ++-..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~-------------arg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRL-------------ARGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccc-------------ccccc
Confidence 44567788999999999999999999999999999999999999999999888888554433 22223
Q ss_pred HHhhhcCCCCCCCCCCCcc
Q 009692 215 IRDAMRNPICTNCGGPAII 233 (528)
Q Consensus 215 l~e~~~~~~C~~Cgg~~~~ 233 (528)
...--...-|-.|-..+..
T Consensus 512 ~~~~~~p~~C~~C~~sttt 530 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTT 530 (1406)
T ss_pred ccCCCCcccceeeeeeeec
Confidence 3333344568888887754
No 85
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.21 E-value=10 Score=28.52 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHhhh
Q 009692 242 HLRIENARLKDELDRVCAL 260 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~~~~ 260 (528)
.|..||.||+.|++.++++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5778999999999988875
No 86
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=58.57 E-value=37 Score=34.16 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=72.3
Q ss_pred echhHHHHHhcCh---hhHhhhcccccccceEeEEee-CCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCC
Q 009692 407 INSLALVETLMDP---NRWAEMFPCMIARTATTDVIS-SGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (528)
Q Consensus 407 m~~~~LVe~lmD~---~~W~~~Fp~iVs~a~T~~Vis-~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G 482 (528)
+.|..|-++|||. .+|=.+ |.+-.||+..+ ||. .++|=+.+.|.|+- .||+-++|---+..+-
T Consensus 64 vtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~tg~--------~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 64 VTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPVTGT--------EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCCCCc--------eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 4678889999995 688876 45568888776 554 68999999998876 5999999877777666
Q ss_pred eEEEEEeeccCccCCCCC-CCcccccccCCcceee-----ecCCC
Q 009692 483 VWAVVDVSIDTIRETSGA-PAFVNCRRLPSGCVVQ-----DMPNG 521 (528)
Q Consensus 483 ~WaVvDVSld~~~~~~~~-~~~~~crr~PSGclIq-----dm~nG 521 (528)
.-.||--|++.- ...+ ...+|..-.=||.+|+ +-++|
T Consensus 131 ~~~i~s~~v~h~--s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~ 173 (219)
T KOG2761|consen 131 DYYIVSKSVQHP--SYPPLKKKVRVTVYRSGWLIRVESRSGDEQG 173 (219)
T ss_pred eEEEEEecccCC--CcCCcCCcEEEEEEEEEEEEEcccccCCCCc
Confidence 677776666532 1111 1246667778999999 66666
No 87
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.24 E-value=20 Score=37.18 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH
Q 009692 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~ 255 (528)
-.+...+..+|+.|++++..+.+... +.+.|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhC
Confidence 34444555566666666555554432 55567777777777664
No 88
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.71 E-value=22 Score=31.79 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhHHHHHHHh
Q 009692 239 EEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~ 258 (528)
|..+|++||+.||+.|.+..
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777776654
No 89
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.66 E-value=47 Score=26.35 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=14.4
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (528)
+......|....+.|..+|..|+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777776666654
No 90
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.58 E-value=29 Score=26.31 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=11.0
Q ss_pred HhhHHHHHhhHHHHhhhhhHHh
Q 009692 196 HENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e 217 (528)
.....|+.+++.|..||..|+.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444443
No 91
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=56.03 E-value=35 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.7
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCC
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGM 443 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~ 443 (528)
.+-+|--.+..+-+++-|+.+|-+.||.+ .-++|++.|.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~ 43 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDG 43 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecC
Confidence 34556667888999999999999999997 5567777544
No 92
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.88 E-value=43 Score=30.21 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHhHHHHHHHh
Q 009692 239 EEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~ 258 (528)
|..+|++||..||+.|+++.
T Consensus 37 EN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 37 ENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55678888888888877653
No 93
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.03 E-value=39 Score=37.21 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCceec
Q 009692 339 MFLELALAAMDELVKMAQTDEPLWIRS 365 (528)
Q Consensus 339 ~~~elA~~Am~El~~~a~~~eplWi~~ 365 (528)
.|++ |..||.|+-.+.+-.---|.+.
T Consensus 398 kIle-ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 398 KILE-AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 6789999888776666668653
No 94
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.61 E-value=47 Score=34.71 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH
Q 009692 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (528)
Q Consensus 191 r~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~ 255 (528)
|+++|.+.+.+..|.+.|..+|.+||+.. .+|..|-.+||+=+.
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa---------------------~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQA---------------------SELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 44567777888888999999999888754 346667777777543
No 95
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=49.40 E-value=1.1e+02 Score=34.08 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHH-hhc-CCCCCHHHHHHHHhhhCcccceEEEeecchhhH-HHHHHHHHhhHHHHHhhHHHHhhhhh
Q 009692 138 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ-MKTQLERHENSLLRQENDKLRAENMS 214 (528)
Q Consensus 138 R~rfT~eQl~~LE~~-F~~-~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak-~Kr~~~r~e~~~l~~en~~L~~en~~ 214 (528)
--++|.+....|.+. |-. ..+|-.+.-+++-++.... .+|+|.. ++|++++.--..|......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvRRK-------IrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVRRK-------IRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHHHH-------HHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 446888888888765 222 4466666666666655211 1233322 22222222222333344445556666
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhhh
Q 009692 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 215 l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~ 261 (528)
|+. ..++|..+|.-|-++|.++.++.
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHH
Confidence 654 55678889999999998877653
No 96
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.65 E-value=22 Score=37.67 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=11.8
Q ss_pred hhHHHHHhhHHHHhhhhhHHhh
Q 009692 197 ENSLLRQENDKLRAENMSIRDA 218 (528)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~ 218 (528)
|+..||+||++|+.||..|+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~e 54 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIE 54 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHH
Confidence 4445555555555555555543
No 97
>PF15058 Speriolin_N: Speriolin N terminus
Probab=48.43 E-value=27 Score=34.44 Aligned_cols=39 Identities=36% Similarity=0.518 Sum_probs=27.7
Q ss_pred HHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
+-++.++++|-.||.+||+..+ |-.||.+||.-|-..++
T Consensus 8 eGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 3456677777778888877654 77789988887665554
No 98
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=47.63 E-value=58 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.0
Q ss_pred eeEEechhHHHHHhcChhhHhhhcccccccceEeEEee
Q 009692 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (528)
Q Consensus 403 gvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis 440 (528)
-.+-..+.++.++|.|.+.|.+-+|.+. .+++++
T Consensus 7 ~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~ 40 (144)
T cd05018 7 FRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIG 40 (144)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhccchh----hccccC
Confidence 3456678899999999999999999874 355554
No 99
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.40 E-value=18 Score=34.82 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHhHHHHHHHh
Q 009692 239 EEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~ 258 (528)
|+..|++|++|||||+..+.
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44457777777777765443
No 100
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=47.01 E-value=1.3e+02 Score=25.80 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHh
Q 009692 187 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 187 ak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 258 (528)
.+.+|...+++-..|+.+.++=..-+..|..++....++-+..|. .+....+.|..|-|.|..|+.++-
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~---~lp~~~keLL~EIA~lE~eV~~LE 74 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPS---SLPKKAKELLEEIALLEAEVAKLE 74 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccc---cCChHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777776666667777777765554433333 344566778888888888876654
No 101
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.85 E-value=46 Score=37.05 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~ 219 (528)
.|.+.+.+.++|++|++||++|++..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555556666666666666665543
No 102
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.51 E-value=27 Score=37.18 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=19.3
Q ss_pred CCceeeeecceeEEechhHHHHHhc--ChhhHhhhccccc
Q 009692 393 GFVTEASRETGMVIINSLALVETLM--DPNRWAEMFPCMI 430 (528)
Q Consensus 393 g~~~EASR~sgvV~m~~~~LVe~lm--D~~~W~~~Fp~iV 430 (528)
.+.+=|..+--+|+.|+ +.+++| .+++...+|+-||
T Consensus 299 mlfVYs~k~qRllFAN~--~fk~wtGy~~edFl~~~~dIV 336 (401)
T PF06785_consen 299 MLFVYSPKSQRLLFANS--QFKTWTGYSSEDFLKDFSDIV 336 (401)
T ss_pred eEEEecchhhHHHHhHH--HHHHHhccCHHHHHhcchHHH
Confidence 34555666666766553 445544 2444555555543
No 103
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.14 E-value=59 Score=26.80 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHhHHHHHHH
Q 009692 238 LEEQHLRIENARLKDELDRV 257 (528)
Q Consensus 238 ~e~~~L~~EN~~Lk~el~r~ 257 (528)
.+..+|+.||..|++|++..
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35567777888888777654
No 104
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.73 E-value=36 Score=35.26 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=31.1
Q ss_pred HHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhh-hHHHHHHHHhHHHHHHHhhhh
Q 009692 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 201 l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~-~~L~~EN~~Lk~el~r~~~~~ 261 (528)
.-.....|++||++|++++. +. +++......|++|.+|++.++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466788999999998764 22 455555566999999988864
No 105
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.18 E-value=45 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=14.1
Q ss_pred hhHHHHHHHHhHHHHHHHhhhhhh
Q 009692 240 EQHLRIENARLKDELDRVCALAGK 263 (528)
Q Consensus 240 ~~~L~~EN~~Lk~el~r~~~~~~~ 263 (528)
...|+.++.+|++|+..++.+...
T Consensus 231 n~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 231 NEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666677777766665433
No 106
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=42.97 E-value=50 Score=34.01 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHHHHHHhhh
Q 009692 242 HLRIENARLKDELDRVCAL 260 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~~~~ 260 (528)
.|..||+.|+.+++.+...
T Consensus 226 ~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 226 ELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555443
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=42.94 E-value=57 Score=35.73 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=28.6
Q ss_pred cccCceeeEEeeeeeecCCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEE
Q 009692 464 LVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVI 526 (528)
Q Consensus 464 LVP~Re~~FLRyckq~~~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVt 526 (528)
-+-+|++.++-||--+.-+ ++|| -+.|... .+|.+-.=|+=+.+.+|-|. +||
T Consensus 293 ~~C~kt~l~~S~cnDI~~~---~~~~--~SgH~Dk----kvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 293 AYCSKTVLPGSQCNDIVCS---ISDV--ISGHFDK----KVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred hheeccccccccccceEec---ceee--eeccccc----ceEEEeccCCceeeEeecCc-cee
Confidence 4556666666666544333 2222 2222211 36667666666677777665 666
No 108
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=42.24 E-value=26 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhcCCC--CCHHHHHHHHhhhCcccce
Q 009692 141 HTPQQIQELESLFKECPH--PDEKQRLELSKRLCLETRQ 177 (528)
Q Consensus 141 fT~eQl~~LE~~F~~~~~--Ps~~~r~eLA~~LgLs~rQ 177 (528)
+|+.|.+.|...|+..-| |-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999987543 6667778999999998753
No 109
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.87 E-value=27 Score=30.94 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=24.2
Q ss_pred eEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhh
Q 009692 177 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 219 (528)
Q Consensus 177 QVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~ 219 (528)
+...||++.-- .+-.+.+++...+++++++|+++|..|++.+
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578865411 1222344555667777777777777666544
No 110
>COG5570 Uncharacterized small protein [Function unknown]
Probab=41.21 E-value=78 Score=25.00 Aligned_cols=45 Identities=29% Similarity=0.524 Sum_probs=28.4
Q ss_pred HHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 201 l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
|.+....|.. .+.+++..+.| .+ ..-..|....-+||+|++++.+
T Consensus 10 L~kkHg~le~---ei~ea~n~Ps~---dd--------~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 10 LEKKHGNLER---EIQEAMNSPSS---DD--------LAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHhhchHHH---HHHHHhcCCCc---ch--------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444443 46777765543 22 3444577778899999999875
No 111
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.44 E-value=75 Score=35.49 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHH
Q 009692 186 RTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (528)
Q Consensus 186 Rak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r 256 (528)
..+.+-.+.+.....|.+++++|+.|...+..... +..-..+.|..||++|+++++.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555667777777777776653333222 1122334677899999998853
No 112
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=40.18 E-value=29 Score=39.08 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHhHHHHHH
Q 009692 239 EEQHLRIENARLKDELDR 256 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r 256 (528)
|.++|+.||+.||++|+-
T Consensus 317 Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHhhhHHHHHHHHH
Confidence 455566666666666553
No 113
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=39.07 E-value=12 Score=26.78 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchh
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRR 186 (528)
.+++.+...++..|... ....++|.++|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888887433 2456789999999999987765443
No 114
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.20 E-value=38 Score=30.02 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred eecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 181 WFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e 217 (528)
|+..+..+.+....++++..++++|+.|+.|...++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444445555555555666666666666666555553
No 115
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=36.63 E-value=1.1e+02 Score=30.84 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 260 (528)
.+.-..+++...+++|.|..++-+. |-..|+.||.+||.||+|+..-
T Consensus 92 q~~v~~QQ~~~f~kiRsel~S~e~s--------------------EF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 92 QEKVSYQQKVDFAKIRSELVSIERS--------------------EFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777888775554431 3345889999999999998763
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.97 E-value=36 Score=32.94 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHH
Q 009692 221 NPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (528)
Q Consensus 221 ~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el 254 (528)
.-.||.||++...-+-+-....|...-.+|++++
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 4569999998876554444444444444444444
No 117
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=35.50 E-value=65 Score=30.96 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeec
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
..+|+++++++.+.-.++ |....+..||+++|+++.-|.+-.+
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~ 126 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAP 126 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcC
Confidence 469999999999988776 6788999999999999876665543
No 118
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=35.49 E-value=12 Score=37.47 Aligned_cols=36 Identities=39% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARL 250 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~L 250 (528)
++-....|+.-.+-|-+||++|++ |.++|+.||+||
T Consensus 127 Q~T~I~dLrrlVe~L~aeNErLr~---------------------EnkqL~ae~arL 162 (243)
T PF08961_consen 127 QATKIADLRRLVEFLLAENERLRR---------------------ENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 334445566666777777777765 455677788887
No 119
>PRK10724 hypothetical protein; Provisional
Probab=35.02 E-value=1.8e+02 Score=27.37 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=37.2
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhccccc
Q 009692 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPL 464 (528)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPL 464 (528)
+.+.+|--.+..|.+.+.|.++|-+.+|-. .-.+|+.-.. ++ +.|+++|--.-
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~----~~----~~a~l~v~~~g 70 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTP----GQ----MTAAVDVSKAG 70 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecC----CE----EEEEEEEeeCC
Confidence 445778889999999999999999999985 3444555432 22 45777664443
No 120
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.00 E-value=1.4e+02 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=11.6
Q ss_pred HHHHHhhHHHHhhhhhHHhh
Q 009692 199 SLLRQENDKLRAENMSIRDA 218 (528)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~ 218 (528)
..|-...+.|+.||..|++.
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q 29 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQ 29 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666653
No 121
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=33.88 E-value=33 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
..+|+.|.++|+..++ . ....++|..+|++...|+.|-++.+.+.|
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr 50 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIE 50 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4689999999988432 2 24668999999999999888775544444
No 122
>PRK00118 putative DNA-binding protein; Validated
Probab=31.91 E-value=76 Score=28.26 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.+++.|...+...|.... ...++|+.+|+++..|+.|...-|.+.|+
T Consensus 17 ~L~ekqRevl~L~y~eg~-----S~~EIAe~lGIS~~TV~r~L~RArkkLr~ 63 (104)
T PRK00118 17 LLTEKQRNYMELYYLDDY-----SLGEIAEEFNVSRQAVYDNIKRTEKLLED 63 (104)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356777777766665432 45689999999999998888765555554
No 123
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=31.62 E-value=1.6e+02 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=28.3
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCC
Q 009692 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (528)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G 442 (528)
+..|...+..+.+++-|.+.|.+.+|.+ .-++|+..+
T Consensus 4 s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~ 40 (138)
T cd07813 4 SRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERD 40 (138)
T ss_pred EEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcC
Confidence 4455667778889999999999999997 445566643
No 124
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=31.14 E-value=99 Score=26.71 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHh
Q 009692 137 RYHRHTPQQIQELESLF 153 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F 153 (528)
.+..|+.+++..|....
T Consensus 35 g~R~y~~~di~~l~~i~ 51 (103)
T cd01106 35 GYRLYTEEDLERLQQIL 51 (103)
T ss_pred CceeeCHHHHHHHHHHH
Confidence 34569999999987654
No 125
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=30.95 E-value=8.9 Score=43.49 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHhhcCCCCCHHHHHHHHhhhCc-------ccceEEEeecchhhHHHHHHH
Q 009692 150 ESLFKECPHPDEKQRLELSKRLCL-------ETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 150 E~~F~~~~~Ps~~~r~eLA~~LgL-------s~rQVkvWFQNRRak~Kr~~~ 194 (528)
+.+|.+++.+......+--.++.+ +.+.|++||.|||.++|+-+.
T Consensus 708 ~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k~ 759 (769)
T KOG3755|consen 708 HHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLKM 759 (769)
T ss_pred hhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhhc
Confidence 555677777777666655555433 467899999999999987543
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.75 E-value=82 Score=31.34 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHhhHHHHhhhhhHHhhh
Q 009692 201 LRQENDKLRAENMSIRDAM 219 (528)
Q Consensus 201 l~~en~~L~~en~~l~e~~ 219 (528)
..+....|+.+|+.|++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455666666665544
No 127
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.50 E-value=50 Score=27.95 Aligned_cols=18 Identities=44% Similarity=0.697 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 009692 242 HLRIENARLKDELDRVCA 259 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~~~ 259 (528)
.|..||++||.||+++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEA 21 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366788888888875544
No 128
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=30.42 E-value=40 Score=21.37 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEe
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 181 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvW 181 (528)
.++.++...+...|.... ...++|+.++++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCCCHHHHHHh
Confidence 356677766666675332 4567889999988776655
No 129
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.22 E-value=53 Score=28.59 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHH
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~ 216 (528)
.+..||.+++..|...- .|.+..|++-.+|+-+..+.... -.....+......+++|+..|+
T Consensus 35 g~R~Yt~~di~~l~~I~------------~llr~~G~~l~~i~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~ 96 (99)
T cd04765 35 GRRYYRPKDVELLLLIK------------HLLYEKGYTIEGAKQALKEDGAA------AIREEEAEERLPSIRAELLDLR 96 (99)
T ss_pred CCeeeCHHHHHHHHHHH------------HHHHHCCCCHHHHHHHHHhcccc------ccchhhHHHHHHHHHHHHHHHH
Confidence 34569999999886542 23445555555555544432222 1122334455555666666665
Q ss_pred h
Q 009692 217 D 217 (528)
Q Consensus 217 e 217 (528)
+
T Consensus 97 ~ 97 (99)
T cd04765 97 D 97 (99)
T ss_pred h
Confidence 4
No 130
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=29.82 E-value=23 Score=26.41 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEe
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFW 181 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvW 181 (528)
.+++.|..+|...|... ..-.++|..+|++...|+.+
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~ 40 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRI 40 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHH
Confidence 47889999999999433 24678999999999877644
No 131
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.73 E-value=84 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhhh
Q 009692 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~ 261 (528)
...-....++++||+.|++++. +.+....+...|++|.++++.++
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~------------------~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 65 FESLASLFDLREENEELKKELL------------------ELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567788888888887654 22222233346788888887764
No 132
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.53 E-value=1.1e+02 Score=30.30 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHH
Q 009692 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r 256 (528)
......|+++|++|+.+...++... ..|..||..+++.+..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~---------------------~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKV---------------------DAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 3444457788888888777777643 3466778888876643
No 133
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.37 E-value=1.2e+02 Score=28.71 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=39.8
Q ss_pred eEEEeecchhhHH-----HHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhH
Q 009692 177 QVKFWFQNRRTQM-----KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (528)
Q Consensus 177 QVkvWFQNRRak~-----Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk 251 (528)
-.+|||.|...-. .-.....+...|+.++..|+.+...+...+....+. + -..+|..+.+.|+
T Consensus 55 KqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-----~-------t~~el~~~i~~l~ 122 (169)
T PF07106_consen 55 KQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE-----P-------TNEELREEIEELE 122 (169)
T ss_pred ceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-------CHHHHHHHHHHHH
Confidence 3478888766533 233334456667777777777777777666543211 1 1223555556666
Q ss_pred HHHHHHhh
Q 009692 252 DELDRVCA 259 (528)
Q Consensus 252 ~el~r~~~ 259 (528)
+|+..+..
T Consensus 123 ~e~~~l~~ 130 (169)
T PF07106_consen 123 EEIEELEE 130 (169)
T ss_pred HHHHHHHH
Confidence 66555443
No 134
>PHA03162 hypothetical protein; Provisional
Probab=28.32 E-value=1.5e+02 Score=27.57 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHhhhcCC
Q 009692 195 RHENSLLRQENDKLRAENMSIRDAMRNP 222 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~ 222 (528)
......|.++..+|+-||+.|+..+...
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778999999999999999999644
No 135
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=27.77 E-value=2.1e+02 Score=25.02 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.4
Q ss_pred ceeEEechhHHHHHhcChhhHhhhccc
Q 009692 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (528)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~ 428 (528)
+.+|--.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 345556788999999999999998886
No 136
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=27.72 E-value=70 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=26.4
Q ss_pred eEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeecCCeEEEEEeeccCc
Q 009692 434 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (528)
Q Consensus 434 ~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSld~~ 494 (528)
..++|++....+..+|.--.+.+++...+- +.+-|-|--...+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-----~~i~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-----QPIPVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-----EEEEEEEEEEEETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-----CcEEEEEEEEEcCCCeEEEEEEEcce
Confidence 345555444433322333334444444433 33334444444889999999999986
No 137
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.60 E-value=55 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=17.9
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~ 219 (528)
.+.+..-|+.-.+.|.+||.+|+..+
T Consensus 3 TEvdCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 3 TEVDCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777776644
No 138
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.69 E-value=90 Score=29.05 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=16.3
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (528)
.+.++..|.++.++|+.||.+++.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888877666554
No 139
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.73 E-value=1.1e+02 Score=31.80 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhhh
Q 009692 202 RQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 202 ~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~ 261 (528)
-++...+..||+.+++.+. +..|+..|...|++|..|++.++
T Consensus 65 ~~~~~~~~~en~~Lk~~l~------------------~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 65 LKSLKDLALENEELKKELA------------------ELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHhHHHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888889999999885 77888899999999999998864
No 140
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.61 E-value=1.8e+02 Score=24.32 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=35.9
Q ss_pred HhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhh
Q 009692 196 HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (528)
Q Consensus 196 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 260 (528)
..-..|+++|=.|+-...-|.+.+.. .+|....++.-+.-.|..|++.|+.|+++....
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~------~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQK------LGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666651 123223333445557888888888888776553
No 141
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=24.37 E-value=35 Score=17.70 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=7.3
Q ss_pred ceeeecCCC
Q 009692 513 CVVQDMPNG 521 (528)
Q Consensus 513 clIqdm~nG 521 (528)
|+||.+|-|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 789988865
No 142
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.34 E-value=2.8e+02 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhHHHHHHHhhhhhhc
Q 009692 240 EQHLRIENARLKDELDRVCALAGKF 264 (528)
Q Consensus 240 ~~~L~~EN~~Lk~el~r~~~~~~~~ 264 (528)
...|..||++|+-|.+.++..+.+.
T Consensus 31 ~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 31 LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468889999999998888776654
No 143
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=24.29 E-value=1.1e+02 Score=26.80 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
+....-.|+.+|||...--.. |+ .|||.+||+++.+.
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~-aR-------------RnRRRRWR~rq~QI 50 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQ-AR-------------RNRRRRWRARQRQI 50 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HH-HH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccc-cc-------------cchhhhHHHHHHHH
Confidence 344556689999997441111 00 48999999776543
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=24.23 E-value=1.7e+02 Score=31.77 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
.+.....++.+++.|..++..+... ..+++.|..+||+|+++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEE---------------------QKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhC
Confidence 3334444555666666666665543 34566777888999888765
No 145
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=23.68 E-value=66 Score=31.58 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHhhcCC--CCCHHHHHHHHhhhCcccce
Q 009692 140 RHTPQQIQELESLFKECP--HPDEKQRLELSKRLCLETRQ 177 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~--~Ps~~~r~eLA~~LgLs~rQ 177 (528)
.+|+.|+++|...|+..= +|-...-.+||+++|+++.-
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst 194 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKST 194 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHH
Confidence 699999999999998754 46677778999999999853
No 146
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=22.73 E-value=44 Score=24.70 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEE
Q 009692 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVK 179 (528)
Q Consensus 138 R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVk 179 (528)
++.+|.+|...++..++.. ....++|+.+|.++.-|.
T Consensus 2 ~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~lg~s~sTV~ 38 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQG-----MSIREIAKRLGRSRSTVS 38 (44)
T ss_dssp ----------HHHHHHCS--------HHHHHHHTT--HHHHH
T ss_pred ccchhhhHHHHHHHHHHcC-----CCHHHHHHHHCcCcHHHH
Confidence 4578999999999988754 356679999998876554
No 147
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.58 E-value=2e+02 Score=25.55 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecc
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQN 184 (528)
.+..|+.+++..|+.. ...+.+|++-..|+..|..
T Consensus 35 gyR~Y~~~~i~~l~~I-------------~~lr~~G~sl~eI~~~l~~ 69 (123)
T cd04770 35 GYRLYGEADLARLRFI-------------RRAQALGFSLAEIRELLSL 69 (123)
T ss_pred CCccCCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHh
Confidence 4567999999998554 2235555555555555543
No 148
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=22.37 E-value=1.1e+02 Score=23.44 Aligned_cols=31 Identities=19% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCccCCCChhhhHHHHHHHHhHHHHHHHhhh
Q 009692 230 PAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (528)
Q Consensus 230 ~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~ 260 (528)
|++.....++..||+.|+..|+.-+..+|.-
T Consensus 3 ~~v~~~~dydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 3 PVVVAQHDYDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred ceeecccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556788899999999999998888753
No 149
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.27 E-value=85 Score=30.59 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=26.3
Q ss_pred Hhhhc-CCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHh
Q 009692 216 RDAMR-NPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 216 ~e~~~-~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 258 (528)
-+|+. .-.||.||.....-+.+-....|..+-.+|++|+++..
T Consensus 126 deA~~~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~ 169 (176)
T COG1675 126 DEAMELGFTCPKCGEDLEEYDSSEEIEELESELDELEEELERND 169 (176)
T ss_pred HHHHHhCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHhccc
Confidence 34433 34699999988666655555555556666666665543
No 150
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.26 E-value=2.6e+02 Score=22.95 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=7.4
Q ss_pred HHHHhhhhhhccC
Q 009692 254 LDRVCALAGKFLG 266 (528)
Q Consensus 254 l~r~~~~~~~~~~ 266 (528)
.+|+..+|.+.+|
T Consensus 60 ~~rIe~~Ar~~lg 72 (85)
T TIGR02209 60 HERIEKIAKKQLG 72 (85)
T ss_pred HHHHHHHHHHhcC
Confidence 3455556666555
No 151
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.23 E-value=2.2e+02 Score=25.56 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhh---HHHHHHHHHhhHHHHHhhHHHHhhh
Q 009692 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT---QMKTQLERHENSLLRQENDKLRAEN 212 (528)
Q Consensus 136 r~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRa---k~Kr~~~r~e~~~l~~en~~L~~en 212 (528)
..+..|+.+++..|+.. ...+.+|++-.+|+-+|..... ...+...+.....++++.+.|....
T Consensus 33 ~g~R~Y~~~~l~~l~~I-------------~~l~~~G~sl~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 99 (124)
T TIGR02051 33 GGYRRYPEETVKRLRFI-------------KRAQELGFSLEEIGGLLGLVDGTHCREMYELASRKLKSVQAKMADLLRIE 99 (124)
T ss_pred CCCEeECHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557999999988433 2345556665555555543221 1112222333344444455454444
Q ss_pred hhHHh
Q 009692 213 MSIRD 217 (528)
Q Consensus 213 ~~l~e 217 (528)
..|.+
T Consensus 100 ~~L~~ 104 (124)
T TIGR02051 100 RLLEE 104 (124)
T ss_pred HHHHH
Confidence 44443
No 152
>PRK02224 chromosome segregation protein; Provisional
Probab=21.92 E-value=3.3e+02 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCCccCC
Q 009692 220 RNPICTNCGGPAIIGD 235 (528)
Q Consensus 220 ~~~~C~~Cgg~~~~~~ 235 (528)
....||.||.+....+
T Consensus 450 ~~~~Cp~C~r~~~~~~ 465 (880)
T PRK02224 450 EAGKCPECGQPVEGSP 465 (880)
T ss_pred hcccCCCCCCcCCCcc
Confidence 4678999999775433
No 153
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.76 E-value=2.3e+02 Score=24.10 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhhhhhccC
Q 009692 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLG 266 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~~~~~ 266 (528)
+.+...+..+.+++..+...+.+ |..+|+.|-++|+. .+|+..+|.+-+|
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~---------------------e~~~L~lE~~~l~~-~~rIe~iA~~~Lg 83 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQE---------------------ENERLRLEIATLSS-PSRIERIAREKLG 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhC-HHHHHHHHHHcCC
No 154
>PRK03918 chromosome segregation protein; Provisional
Probab=21.61 E-value=2.6e+02 Score=33.07 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCcc
Q 009692 221 NPICTNCGGPAII 233 (528)
Q Consensus 221 ~~~C~~Cgg~~~~ 233 (528)
.+.||.|+.+...
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 4679999998754
No 155
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.60 E-value=22 Score=30.99 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.0
Q ss_pred HHHHHhhhCcccceEEEeecc
Q 009692 164 RLELSKRLCLETRQVKFWFQN 184 (528)
Q Consensus 164 r~eLA~~LgLs~rQVkvWFQN 184 (528)
..++|+.+|+++..++.|-++
T Consensus 3 i~EvA~~~gVs~~tLR~ye~~ 23 (99)
T cd04765 3 IGEVAEILGLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 357899999999999999654
No 156
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.60 E-value=1.4e+02 Score=25.80 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.4
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCC
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGM 443 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~ 443 (528)
.+..|-..+.++.+.|.|.+.|.+.+|.+ .-++++..+.
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~ 44 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDN 44 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCC
Confidence 34566778899999999999999999996 3455665543
No 157
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=21.55 E-value=2.6e+02 Score=24.89 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhh-HHHHHHHHHhhHHHHHhhHHHHhhhhhH
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT-QMKTQLERHENSLLRQENDKLRAENMSI 215 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRa-k~Kr~~~r~e~~~l~~en~~L~~en~~l 215 (528)
.+..|+.+++..|+.. ...+.+|++-.+|+..+.+... +..+..-.+....+.++.+.|......+
T Consensus 34 gyR~Y~~~~l~~l~~I-------------~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L 100 (120)
T cd04781 34 LRRQYDPQVLDRLALI-------------ALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELL 100 (120)
T ss_pred CceecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999988543 3344455555555555544321 1112223333344444455554444444
Q ss_pred H
Q 009692 216 R 216 (528)
Q Consensus 216 ~ 216 (528)
.
T Consensus 101 ~ 101 (120)
T cd04781 101 R 101 (120)
T ss_pred H
Confidence 3
No 158
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=21.52 E-value=2.1e+02 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=24.1
Q ss_pred echhHHHHHhcChhhHhhhcccccccceEeEEeeCC
Q 009692 407 INSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (528)
Q Consensus 407 m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G 442 (528)
..+..+-+++.|.+.|.+.+|.+. -++|+...
T Consensus 3 ap~~~V~~~i~D~e~~~~~~p~~~----~v~vl~~~ 34 (130)
T PF03364_consen 3 APPEEVWSVITDYENYPRFFPPVK----EVRVLERD 34 (130)
T ss_dssp S-HHHHHHHHTTGGGHHHHCTTEE----EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCc----eEEEEEeC
Confidence 346677899999999999999973 35566644
No 159
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.38 E-value=1.8e+02 Score=26.03 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHH
Q 009692 242 HLRIENARLKDE 253 (528)
Q Consensus 242 ~L~~EN~~Lk~e 253 (528)
+|++||+-||+-
T Consensus 89 ~L~~E~diLKKa 100 (121)
T PRK09413 89 KKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHH
Confidence 344455555443
No 160
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.38 E-value=1.8e+02 Score=26.13 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecch
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNR 185 (528)
.+..|+.+++..|.. ....+.+|++-.+|+-+|...
T Consensus 35 gyR~Y~~~~l~~l~~-------------I~~lr~~G~sL~eI~~~l~~~ 70 (126)
T cd04783 35 GYRRYPEETVTRLRF-------------IKRAQELGFTLDEIAELLELD 70 (126)
T ss_pred CCeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHhcc
Confidence 456799999998853 233466666666666666543
No 161
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.12 E-value=1.6e+02 Score=24.55 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=12.5
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (528)
.+.++..+..+++.|+.||..+++
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555553
No 162
>PF15294 Leu_zip: Leucine zipper
Probab=20.92 E-value=1.9e+02 Score=30.27 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=38.2
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhh--HHHHHHHHhHHHHHHHhhhhhhccCC
Q 009692 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQ--HLRIENARLKDELDRVCALAGKFLGR 267 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~--~L~~EN~~Lk~el~r~~~~~~~~~~~ 267 (528)
......+..+.++|++||..+++.+. +++.+ ....|+..|+.+|..++..++.+-++
T Consensus 124 ~g~~~ll~kEi~rLq~EN~kLk~rl~----------------~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k 182 (278)
T PF15294_consen 124 SGGSELLNKEIDRLQEENEKLKERLK----------------SLEKQATSALDEKSKLEAQLKELQDEQGDQKGK 182 (278)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33345577888888888888888776 33333 33447888888888877765555444
No 163
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.81 E-value=2.3e+02 Score=32.34 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=9.2
Q ss_pred cccCCcceeeec
Q 009692 507 RRLPSGCVVQDM 518 (528)
Q Consensus 507 rr~PSGclIqdm 518 (528)
-++|+|++|.+-
T Consensus 480 ~~f~~~~~~~~g 491 (546)
T KOG0977|consen 480 FKFPSGYVLKPG 491 (546)
T ss_pred EECCCCceecCC
Confidence 478999988754
No 164
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=20.79 E-value=44 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQM 189 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~ 189 (528)
.+|+.++++|.....-. ...++|..++++++.|+.+..+=+.|.
T Consensus 3 ~LT~~E~~vl~~l~~G~------~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 3 SLTERELEVLRLLAQGM------SNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp SS-HHHHHHHHHHHTTS-------HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcC------CcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 58899999998877654 377899999999998887665544443
No 165
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.43 E-value=4.9e+02 Score=28.91 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhh-----HHHHHHHHHhhHHH-H----------
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT-----QMKTQLERHENSLL-R---------- 202 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRa-----k~Kr~~~r~e~~~l-~---------- 202 (528)
-.|...|+..|-..|+..++.....|.+-+. =|=....+-++|-|-++ |||-.+.++.-..- +
T Consensus 53 lk~~~KqLR~li~~LredKlI~~~~r~E~~~-nGr~~~~~~YyyInY~~~idvVKyKlh~m~krled~~~d~t~~~~Y~C 131 (436)
T KOG2593|consen 53 LKFNKKQLRKLIASLREDKLIKIRTRTETAE-NGRAVDKHTYYYINYAQVIDVVKYKLHQMRKRLEDRLRDDTNVAGYVC 131 (436)
T ss_pred hcccHHHHHHHHHHhhhhhhhhhhhhhhcCC-CCcceeeeEEEEeehHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 3578889999999999999888888877655 11111114677778765 45533322211110 0
Q ss_pred ----HhhHHHHhhhhhHHhhh-cCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhhhhhhccC
Q 009692 203 ----QENDKLRAENMSIRDAM-RNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLG 266 (528)
Q Consensus 203 ----~en~~L~~en~~l~e~~-~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~~~~~~~~ 266 (528)
+....|.+ .+|-... ....|-.|+|+.+-.+-......-+.--++|.+|++-+-.++.+.-+
T Consensus 132 p~C~kkyt~Lea--~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~~~l~~~~~Q~~pi~d~Lk~~e~ 198 (436)
T KOG2593|consen 132 PNCQKKYTSLEA--LQLLDNETGEFHCENCGGELVEDENKLPSKESRTALNRLMEQLEPIIDLLKELEG 198 (436)
T ss_pred CccccchhhhHH--HHhhcccCceEEEecCCCchhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11122222 1111111 12348888888766553333333334456777777776666555444
No 166
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=20.28 E-value=61 Score=29.53 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 141 fT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+++.+..++...|-..- .-.++|+.+|+++..|+.....-|.+.|+..
T Consensus 107 Lp~~~r~v~~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l 154 (160)
T PRK09642 107 LPENYRDVVLAHYLEEK-----SYQEIALQEKIEVKTVEMKLYRARKWIKKHW 154 (160)
T ss_pred CCHHHHHHHHHHHHhCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 56666666665543321 3558999999999999988775555555443
No 167
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=20.11 E-value=49 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=21.0
Q ss_pred hHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCC
Q 009692 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGG 229 (528)
Q Consensus 198 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg 229 (528)
|.+|+.++..|++-...+-..++.-.|-.|-.
T Consensus 44 nqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 44 NQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 44455555555555566666777888998854
Done!