Query 009692
Match_columns 528
No_of_seqs 420 out of 1696
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a01_A Homeodomain-containing 99.7 9.8E-19 3.3E-23 149.2 4.4 77 130-206 13-89 (93)
2 2kt0_A Nanog, homeobox protein 99.7 8.8E-19 3E-23 146.2 3.4 64 130-193 18-81 (84)
3 2dmt_A Homeobox protein BARH-l 99.7 2.1E-18 7E-23 143.0 4.6 63 131-193 14-76 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 2E-18 6.9E-23 142.5 3.6 63 131-193 14-76 (80)
5 2dmq_A LIM/homeobox protein LH 99.7 4.4E-18 1.5E-22 140.7 3.8 65 132-196 5-69 (80)
6 2cue_A Paired box protein PAX6 99.7 7.6E-18 2.6E-22 139.5 5.2 65 132-196 5-69 (80)
7 1nk2_P Homeobox protein VND; h 99.7 7.1E-18 2.4E-22 138.8 4.9 65 132-196 7-71 (77)
8 1wh5_A ZF-HD homeobox family p 99.7 4.8E-18 1.7E-22 141.2 3.2 60 132-191 15-78 (80)
9 2dms_A Homeobox protein OTX2; 99.7 4.6E-18 1.6E-22 140.8 2.1 64 132-195 5-68 (80)
10 2cra_A Homeobox protein HOX-B1 99.7 6.6E-18 2.3E-22 136.4 3.0 62 132-193 5-66 (70)
11 2dmu_A Homeobox protein goosec 99.7 9E-18 3.1E-22 135.5 3.6 61 133-193 6-66 (70)
12 2vi6_A Homeobox protein nanog; 99.7 3.5E-18 1.2E-22 134.8 1.1 60 133-192 2-61 (62)
13 1puf_A HOX-1.7, homeobox prote 99.7 2.2E-17 7.6E-22 135.8 5.8 64 132-195 11-74 (77)
14 2e1o_A Homeobox protein PRH; D 99.7 1.3E-17 4.6E-22 134.6 4.4 61 133-193 6-66 (70)
15 2r55_A STAR-related lipid tran 99.7 2E-16 6.8E-21 153.6 13.5 165 337-528 21-193 (231)
16 1fjl_A Paired protein; DNA-bin 99.7 1.1E-17 3.8E-22 138.8 4.0 64 131-194 15-78 (81)
17 2h1k_A IPF-1, pancreatic and d 99.7 9.8E-18 3.4E-22 132.7 3.2 59 134-192 3-61 (63)
18 1wh7_A ZF-HD homeobox family p 99.7 7.6E-18 2.6E-22 140.2 2.6 60 131-191 14-78 (80)
19 2da2_A Alpha-fetoprotein enhan 99.7 1.2E-17 4E-22 134.8 3.1 62 132-193 5-66 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.7 1.3E-17 4.4E-22 134.1 3.2 63 134-196 2-64 (68)
21 2djn_A Homeobox protein DLX-5; 99.7 1.1E-17 3.8E-22 135.1 2.7 61 132-192 5-65 (70)
22 2hdd_A Protein (engrailed home 99.7 1.1E-17 3.6E-22 131.6 2.5 58 134-191 3-60 (61)
23 1ig7_A Homeotic protein MSX-1; 99.7 1.9E-17 6.5E-22 128.7 3.2 57 135-191 1-57 (58)
24 2da1_A Alpha-fetoprotein enhan 99.7 1.5E-17 5E-22 134.2 2.5 62 132-193 5-66 (70)
25 1ahd_P Antennapedia protein mu 99.7 2E-17 6.8E-22 133.1 2.5 61 134-194 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.7 1E-17 3.4E-22 134.6 0.6 62 133-194 2-63 (68)
27 1bw5_A ISL-1HD, insulin gene e 99.7 1.6E-17 5.6E-22 132.5 1.7 61 133-193 2-62 (66)
28 1ftt_A TTF-1 HD, thyroid trans 99.7 1.3E-17 4.4E-22 134.1 1.0 61 134-194 2-62 (68)
29 2da4_A Hypothetical protein DK 99.7 2.3E-17 7.8E-22 136.6 2.4 61 132-192 6-70 (80)
30 2l7z_A Homeobox protein HOX-A1 99.6 3.9E-17 1.3E-21 133.1 3.6 62 132-193 5-66 (73)
31 1jgg_A Segmentation protein EV 99.6 2.7E-17 9.3E-22 128.8 2.5 58 135-192 2-59 (60)
32 1b8i_A Ultrabithorax, protein 99.6 1.9E-17 6.4E-22 137.7 1.5 62 132-193 18-79 (81)
33 3nar_A ZHX1, zinc fingers and 99.6 3.7E-17 1.3E-21 140.0 2.5 65 132-196 23-87 (96)
34 3rkq_A Homeobox protein NKX-2. 99.6 4.8E-17 1.6E-21 125.9 2.8 57 134-190 2-58 (58)
35 2r5y_A Homeotic protein sex co 99.6 3E-17 1E-21 138.3 1.6 60 133-192 27-86 (88)
36 1uhs_A HOP, homeodomain only p 99.6 7.8E-17 2.7E-21 130.8 3.6 59 135-193 2-61 (72)
37 3a02_A Homeobox protein arista 99.6 4.5E-17 1.5E-21 127.6 2.0 57 137-193 2-58 (60)
38 1akh_A Protein (mating-type pr 99.6 4.1E-17 1.4E-21 128.0 1.7 59 132-190 3-61 (61)
39 2hi3_A Homeodomain-only protei 99.6 9.1E-17 3.1E-21 130.8 3.8 59 135-193 3-62 (73)
40 2m0c_A Homeobox protein arista 99.6 8.8E-17 3E-21 130.9 3.6 62 132-193 7-68 (75)
41 3a03_A T-cell leukemia homeobo 99.6 7.1E-17 2.4E-21 124.9 2.6 54 139-192 2-55 (56)
42 2da5_A Zinc fingers and homeob 99.6 9.7E-17 3.3E-21 131.5 3.5 59 136-194 9-67 (75)
43 1b72_A Protein (homeobox prote 99.6 8.3E-17 2.8E-21 138.1 2.8 62 133-194 33-94 (97)
44 2k40_A Homeobox expressed in E 99.6 1.1E-16 3.6E-21 128.2 2.9 60 135-194 2-61 (67)
45 2cuf_A FLJ21616 protein; homeo 99.6 1.6E-16 5.4E-21 135.8 4.1 64 132-195 5-83 (95)
46 1x2n_A Homeobox protein pknox1 99.6 1.2E-16 4.2E-21 129.9 2.7 62 132-193 5-69 (73)
47 2ecc_A Homeobox and leucine zi 99.6 1.9E-16 6.4E-21 130.5 3.1 57 138-194 7-63 (76)
48 2ly9_A Zinc fingers and homeob 99.6 1.5E-16 5.1E-21 129.6 2.2 61 134-194 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.6 1.9E-16 6.4E-21 129.9 2.2 59 135-193 9-67 (76)
50 1puf_B PRE-B-cell leukemia tra 99.6 2.2E-16 7.6E-21 128.3 2.3 62 135-196 2-66 (73)
51 2dmn_A Homeobox protein TGIF2L 99.6 3.3E-16 1.1E-20 130.9 3.3 65 132-196 5-72 (83)
52 2ecb_A Zinc fingers and homeob 99.6 1.1E-16 3.8E-21 135.7 0.3 55 139-193 16-70 (89)
53 1e3o_C Octamer-binding transcr 99.6 2.1E-16 7.2E-21 147.3 1.6 61 132-192 99-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.6 3.9E-16 1.3E-20 130.9 2.9 61 135-195 2-65 (87)
55 2dmp_A Zinc fingers and homeob 99.6 7.1E-16 2.4E-20 130.5 4.5 57 137-193 16-72 (89)
56 1k61_A Mating-type protein alp 99.6 4.5E-16 1.5E-20 121.8 2.5 55 137-191 1-58 (60)
57 1du6_A PBX1, homeobox protein 99.6 3E-16 1E-20 124.4 1.2 58 134-191 3-63 (64)
58 2xsd_C POU domain, class 3, tr 99.6 2.3E-16 7.8E-21 147.8 0.5 64 131-194 96-159 (164)
59 2cqx_A LAG1 longevity assuranc 99.6 2E-16 6.9E-21 128.9 -0.1 58 135-192 9-67 (72)
60 2da6_A Hepatocyte nuclear fact 99.6 1.3E-15 4.3E-20 132.0 4.9 65 131-195 3-88 (102)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 3.3E-16 1.1E-20 144.1 0.8 62 131-192 84-145 (146)
62 1le8_B Mating-type protein alp 99.6 3.9E-16 1.3E-20 130.3 0.9 59 135-193 3-64 (83)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 1E-15 3.4E-20 128.7 3.1 59 133-191 26-87 (87)
64 2l9r_A Homeobox protein NKX-3. 99.5 3.6E-16 1.2E-20 126.6 -0.9 57 139-195 9-65 (69)
65 3d1n_I POU domain, class 6, tr 99.5 1.7E-15 6E-20 139.7 3.4 60 132-191 91-150 (151)
66 1wi3_A DNA-binding protein SAT 99.5 2.4E-15 8.1E-20 120.7 3.1 59 132-190 5-64 (71)
67 1lfb_A Liver transcription fac 99.5 1E-15 3.5E-20 132.3 0.2 63 132-194 7-90 (99)
68 3nau_A Zinc fingers and homeob 99.5 2.4E-15 8.3E-20 120.4 2.2 53 141-193 11-63 (66)
69 1x2m_A LAG1 longevity assuranc 99.5 1.4E-15 4.9E-20 121.3 0.4 49 143-191 9-58 (64)
70 2e19_A Transcription factor 8; 99.5 3.4E-15 1.2E-19 119.0 1.6 52 140-191 9-60 (64)
71 3l1p_A POU domain, class 5, tr 99.5 5E-15 1.7E-19 137.4 2.3 61 132-192 94-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.5 6.7E-15 2.3E-19 137.3 1.4 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 1.3E-14 4.6E-19 116.4 0.8 59 140-198 4-65 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 1E-13 3.6E-18 133.0 -0.6 61 131-191 112-193 (194)
75 2lk2_A Homeobox protein TGIF1; 99.2 2.5E-12 8.6E-17 108.8 2.9 58 139-196 10-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.2 4.4E-12 1.5E-16 123.5 1.8 61 130-190 138-219 (221)
77 2da7_A Zinc finger homeobox pr 99.1 9.9E-12 3.4E-16 100.3 1.4 46 143-188 14-59 (71)
78 1mh3_A Maltose binding-A1 home 99.1 1.1E-11 3.9E-16 128.2 -0.9 56 135-190 366-421 (421)
79 3p0l_A Steroidogenic acute reg 98.9 4.2E-09 1.4E-13 101.5 11.4 160 339-528 11-179 (221)
80 2pso_A STAR-related lipid tran 98.9 2.8E-09 9.7E-14 104.6 9.6 159 343-528 33-193 (237)
81 1em2_A MLN64 protein; beta bar 98.8 4.4E-08 1.5E-12 94.7 11.7 163 338-528 21-190 (229)
82 1jss_A Stard4, cholesterol-reg 98.5 2.7E-07 9.4E-12 89.1 10.4 115 398-528 68-188 (224)
83 2nzz_A Penetratin conjugated G 98.5 4.3E-09 1.5E-13 74.9 -2.5 22 176-197 1-22 (37)
84 3fo5_A Thioesterase, adipose a 98.5 4.1E-07 1.4E-11 90.8 9.3 117 400-528 91-211 (258)
85 1ln1_A PC-TP, phosphatidylchol 98.4 4.3E-07 1.5E-11 86.2 8.8 115 398-528 53-174 (214)
86 3qsz_A STAR-related lipid tran 98.0 2.8E-05 9.5E-10 72.5 9.6 116 398-528 28-144 (189)
87 2e3n_A Lipid-transfer protein 97.7 8E-05 2.7E-09 73.0 8.7 164 340-528 24-211 (255)
88 2jn6_A Protein CGL2762, transp 91.8 0.047 1.6E-06 45.2 1.2 76 139-218 4-88 (97)
89 2ys9_A Homeobox and leucine zi 87.9 0.096 3.3E-06 42.1 -0.1 39 145-183 17-55 (70)
90 2jee_A YIIU; FTSZ, septum, coi 84.7 1.7 5.6E-05 35.9 5.7 23 241-263 51-77 (81)
91 2j5u_A MREC protein; bacterial 80.4 0.64 2.2E-05 45.9 2.0 17 239-255 44-60 (255)
92 2wt7_B Transcription factor MA 71.7 5.8 0.0002 33.3 5.2 67 172-259 17-83 (90)
93 1ci6_A Transcription factor AT 71.3 11 0.00037 29.3 6.5 42 193-255 20-61 (63)
94 1hjb_A Ccaat/enhancer binding 69.4 9.2 0.00031 31.8 5.9 19 199-217 39-57 (87)
95 1t2k_D Cyclic-AMP-dependent tr 68.3 14 0.00049 28.2 6.5 40 194-254 20-59 (61)
96 3ra3_B P2F; coiled coil domain 64.8 4.3 0.00015 26.1 2.3 17 241-257 3-19 (28)
97 3tl1_A WHIE ORF VI, polyketide 63.3 16 0.00054 32.9 6.9 39 400-442 6-44 (159)
98 1l8d_A DNA double-strand break 60.0 9.4 0.00032 32.3 4.5 12 221-232 47-58 (112)
99 3s9g_A Protein hexim1; cyclin 56.7 4.1 0.00014 34.6 1.6 58 193-257 34-91 (104)
100 1gu4_A CAAT/enhancer binding p 56.3 18 0.00062 29.4 5.3 15 246-260 58-72 (78)
101 2rn7_A IS629 ORFA; helix, all 56.3 0.15 5.2E-06 42.9 -7.5 45 139-183 5-52 (108)
102 1gd2_E Transcription factor PA 55.1 21 0.00071 28.5 5.4 13 245-257 50-62 (70)
103 1jnm_A Proto-oncogene C-JUN; B 54.0 19 0.00064 27.6 4.9 23 195-217 21-43 (62)
104 3m91_A Proteasome-associated A 50.1 32 0.0011 25.8 5.4 38 200-258 13-50 (51)
105 3p9v_A Uncharacterized protein 48.0 43 0.0015 29.6 7.1 102 401-527 11-112 (161)
106 3a5t_A Transcription factor MA 47.9 1.8 6.1E-05 37.5 -2.1 66 172-258 27-92 (107)
107 1hlv_A CENP-B, major centromer 46.9 9 0.00031 32.6 2.2 48 137-187 4-51 (131)
108 2elh_A CG11849-PA, LD40883P; s 46.9 7.7 0.00026 31.3 1.7 43 135-182 17-59 (87)
109 3m48_A General control protein 46.3 19 0.00065 24.7 3.2 22 240-261 9-30 (33)
110 2wt7_A Proto-oncogene protein 42.9 73 0.0025 24.4 6.7 26 194-219 21-46 (63)
111 2d4r_A Hypothetical protein TT 42.3 42 0.0015 27.4 5.8 36 402-441 7-42 (147)
112 2glo_A Brinker CG9653-PA; prot 41.7 6.3 0.00022 29.4 0.3 45 138-183 3-47 (59)
113 3m9b_A Proteasome-associated A 41.6 27 0.00091 34.4 4.9 20 240-259 77-96 (251)
114 3hug_A RNA polymerase sigma fa 39.0 13 0.00044 30.0 1.9 48 140-192 37-84 (92)
115 3he5_B Synzip2; heterodimeric 38.1 86 0.0029 22.7 5.8 21 239-259 25-45 (52)
116 1gd2_E Transcription factor PA 37.1 57 0.0019 25.9 5.3 18 239-256 51-68 (70)
117 1jko_C HIN recombinase, DNA-in 36.9 6.2 0.00021 27.4 -0.4 42 140-186 5-46 (52)
118 1uii_A Geminin; human, DNA rep 36.3 69 0.0024 26.4 5.7 21 242-262 57-77 (83)
119 2j5u_A MREC protein; bacterial 36.2 23 0.00079 34.6 3.5 19 243-261 41-59 (255)
120 1go4_E MAD1 (mitotic arrest de 35.9 99 0.0034 26.3 6.9 25 239-263 69-93 (100)
121 3tvq_A Multifunctional cyclase 34.7 77 0.0026 28.6 6.6 38 401-442 7-44 (169)
122 3s9g_A Protein hexim1; cyclin 32.6 45 0.0015 28.4 4.1 23 195-217 64-86 (104)
123 1t17_A Conserved hypothetical 32.6 28 0.00096 29.9 3.1 71 401-481 6-76 (148)
124 2oa5_A Hypothetical protein BQ 32.6 74 0.0025 27.5 5.6 25 197-221 9-33 (110)
125 1s7o_A Hypothetical UPF0122 pr 31.8 34 0.0012 29.1 3.5 49 140-193 22-70 (113)
126 1tc3_C Protein (TC3 transposas 30.5 15 0.00051 24.8 0.8 40 140-184 5-44 (51)
127 3tfz_A Cyclase; helix-GRIP, BE 30.4 90 0.0031 27.6 6.3 37 401-441 9-45 (172)
128 1xsv_A Hypothetical UPF0122 pr 29.1 40 0.0014 28.5 3.4 50 140-194 25-74 (113)
129 3oja_A Leucine-rich immune mol 28.4 1.1E+02 0.0037 31.8 7.4 22 238-259 442-463 (487)
130 2oxj_A Hybrid alpha/beta pepti 28.1 54 0.0019 22.5 3.2 21 241-261 11-31 (34)
131 2rgt_A Fusion of LIM/homeobox 27.8 1.7 5.8E-05 39.6 -5.9 29 133-161 135-163 (169)
132 3lph_A Protein REV; helix-loop 26.7 89 0.003 25.0 4.7 37 146-196 18-54 (72)
133 2o8x_A Probable RNA polymerase 26.5 17 0.0006 27.0 0.6 46 140-190 15-60 (70)
134 3mzy_A RNA polymerase sigma-H 25.5 30 0.001 29.4 2.1 46 140-191 109-154 (164)
135 1deb_A APC protein, adenomatou 24.3 66 0.0023 24.1 3.3 22 199-220 6-27 (54)
136 3a2a_A Voltage-gated hydrogen 23.9 1.3E+02 0.0044 23.0 4.8 25 239-263 26-50 (58)
137 2dfs_A Myosin-5A; myosin-V, in 23.9 48 0.0016 39.0 3.9 56 194-259 989-1044(1080)
138 2zxx_A Geminin; coiled-coil, c 23.9 1.7E+02 0.0058 23.8 6.0 19 242-260 52-70 (79)
139 1hjb_A Ccaat/enhancer binding 23.8 1.5E+02 0.0052 24.4 5.8 16 242-257 47-62 (87)
140 2yf2_A C4B binding protein; im 22.7 19 0.00065 27.4 0.1 35 225-259 21-55 (65)
141 1deb_A APC protein, adenomatou 22.2 1.2E+02 0.004 22.7 4.3 21 239-259 11-31 (54)
142 1p4w_A RCSB; solution structur 22.0 35 0.0012 28.3 1.7 40 139-184 33-72 (99)
143 3mq7_A Bone marrow stromal ant 21.4 1E+02 0.0035 26.9 4.5 47 174-220 42-88 (121)
144 2jtd_A Myomesin-1, skelemin; i 21.2 3.7 0.00013 36.7 -4.7 43 140-183 18-60 (142)
145 3m9b_A Proteasome-associated A 20.9 94 0.0032 30.5 4.7 24 194-217 59-82 (251)
146 3c3g_A Alpha/beta peptide with 20.8 90 0.0031 21.3 3.1 21 241-261 10-30 (33)
147 1uo4_A General control protein 20.3 97 0.0033 21.3 3.2 21 241-261 11-31 (34)
148 1iuf_A Centromere ABP1 protein 20.3 47 0.0016 29.2 2.2 47 135-184 6-59 (144)
149 1wlq_A Geminin; coiled-coil; 2 20.2 3.5E+02 0.012 22.1 7.2 10 243-252 57-66 (83)
150 1je8_A Nitrate/nitrite respons 20.1 21 0.00072 28.3 -0.1 44 139-188 20-63 (82)
No 1
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=9.8e-19 Score=149.22 Aligned_cols=77 Identities=32% Similarity=0.428 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhhHHHHHhhH
Q 009692 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (528)
Q Consensus 130 ~~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~ 206 (528)
..+++||+|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999887776666555443
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-19 Score=146.19 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 130 ~~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
...+++|.|+.||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456688899999999999999999999999999999999999999999999999999999754
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-18 Score=142.98 Aligned_cols=63 Identities=29% Similarity=0.384 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.++.+|.|++||.+|+.+||..|..++||+..+|.+||.+|+|+++||++||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456678889999999999999999999999999999999999999999999999999999753
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=2e-18 Score=142.49 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
..++||.|++||.+|+.+||..|..++||+..++.+||.+|+|+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 346678889999999999999999999999999999999999999999999999999999754
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=140.68 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
.++||.|++||.+|+.+||..|..++||+..++.+||.+++|+++||++||||||+|+|++..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999876544
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.6e-18 Score=139.55 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
.+.+|.|++||.+|+.+||..|..++||+..+|.+||.+|+|+++||++||||||+|+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35577889999999999999999999999999999999999999999999999999999876544
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=7.1e-18 Score=138.78 Aligned_cols=65 Identities=31% Similarity=0.396 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
++++|.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|+.+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 45677889999999999999999999999999999999999999999999999999999876544
No 8
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=4.8e-18 Score=141.23 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~----~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.++||.|+.||.+|+.+||..|+. ++||+..+|++||.+|+|+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 466788899999999999999999 999999999999999999999999999999999884
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.6e-18 Score=140.77 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
.+.+|.|++||.+|+.+||..|..++||+..+|.+||.+++|+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4567888999999999999999999999999999999999999999999999999999976543
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=6.6e-18 Score=136.41 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+.+|+|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35677889999999999999999999999999999999999999999999999999999753
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9e-18 Score=135.53 Aligned_cols=61 Identities=30% Similarity=0.563 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+.+|.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4577889999999999999999999999999999999999999999999999999999754
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.68 E-value=3.5e-18 Score=134.82 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
+++|.|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457788999999999999999999999999999999999999999999999999999975
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=2.2e-17 Score=135.81 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
++.++.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.3e-17 Score=134.62 Aligned_cols=61 Identities=36% Similarity=0.425 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+.+++|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567788999999999999999999999999999999999999999999999999999754
No 15
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=153.59 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 009692 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (528)
Q Consensus 337 k~~~~elA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (528)
++.++++|++||+||+++++. +..|....+.. +.++|.+.. .+....+-|..++|-+++.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD-TAGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CSSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 788999999999999999975 46898654321 223443222 1233478899999999999999999
Q ss_pred cC-----hhhHhhhcccccccceEeEEeeCCCCCCCCcceehhh-hhhhcccccccCceeeEEeeeeeecCCeEEEEEee
Q 009692 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMH-AELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (528)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~-aElqvlSPLVP~Re~~FLRyckq~~~G~WaVvDVS 490 (528)
|+ +.+|-..|. .+.+|+.|+. + -.++| ....+++++|+.|||.+||||++.++|.|+|+..|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~------~--~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD------T--LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS------S--EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC------C--EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 899988774 4688888862 1 12333 22234567999999999999999999999999999
Q ss_pred ccCccCCCCCCCcccccccCCcceeeecC--CCccEEEEC
Q 009692 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVIYY 528 (528)
Q Consensus 491 ld~~~~~~~~~~~~~crr~PSGclIqdm~--nGysKVtwv 528 (528)
++.-. .+....++|+..++|||+||+++ +|.|+|||+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~ 193 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTF 193 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEE
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEE
Confidence 98422 12223479999999999999998 789999996
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=1.1e-17 Score=138.79 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.++++|.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3456778899999999999999999999999999999999999999999999999999998653
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.68 E-value=9.8e-18 Score=132.71 Aligned_cols=59 Identities=36% Similarity=0.473 Sum_probs=55.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+|.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 57788999999999999999999999999999999999999999999999999999975
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=7.6e-18 Score=140.18 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~-----~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
..++||.|+.||.+|+.+|| .|.. ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 35668889999999999999 7999 999999999999999999999999999999999884
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=134.76 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.++++.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999753
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=1.3e-17 Score=134.06 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
++|.|+.||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467889999999999999999999999999999999999999999999999999999877654
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=135.10 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+.+|.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567888999999999999999999999999999999999999999999999999999974
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=1.1e-17 Score=131.60 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
+||.|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999996
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.9e-17 Score=128.66 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
||.|+.||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999986
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=134.17 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+.+|.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678889999999999999999999999999999999999999999999999999999753
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.66 E-value=2e-17 Score=133.06 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
+||.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678899999999999999999999999999999999999999999999999999998653
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.65 E-value=1e-17 Score=134.61 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
+++|.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788899999999999999999999999999999999999999999999999999998654
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=1.6e-17 Score=132.50 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+++|.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4578889999999999999999999999999999999999999999999999999999743
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=1.3e-17 Score=134.09 Aligned_cols=61 Identities=38% Similarity=0.510 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
++|.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5778899999999999999999999999999999999999999999999999999998654
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-17 Score=136.57 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~----~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+++|.|+.||.+|+.+||..|+.+ +||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4567888999999999999999999 999999999999999999999999999999999974
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.65 E-value=3.9e-17 Score=133.08 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+.+|+|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35577889999999999999999999999999999999999999999999999999999754
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=2.7e-17 Score=128.85 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678899999999999999999999999999999999999999999999999999974
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.65 E-value=1.9e-17 Score=137.70 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
++++|.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.7e-17 Score=140.05 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
...+|+|++||.+|+.+||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999865443
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.64 E-value=4.8e-17 Score=125.87 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
++|.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999986
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.64 E-value=3e-17 Score=138.30 Aligned_cols=60 Identities=35% Similarity=0.511 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
+.+|.|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 457788999999999999999999999999999999999999999999999999999975
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=7.8e-17 Score=130.80 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~-~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.++|++||.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356788999999999999996 99999999999999999999999999999999999865
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=4.5e-17 Score=127.61 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367899999999999999999999999999999999999999999999999999864
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=4.1e-17 Score=128.05 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
.++++.|++||.+|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35577888999999999999999999999999999999999999999999999999986
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=9.1e-17 Score=130.83 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~-~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+++|++||.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999995 99999999999999999999999999999999999865
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=8.8e-17 Score=130.92 Aligned_cols=62 Identities=31% Similarity=0.518 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+++++.|++||.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999754
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=7.1e-17 Score=124.93 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-17 Score=131.49 Aligned_cols=59 Identities=25% Similarity=0.551 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 136 r~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
++|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999997653
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=8.3e-17 Score=138.07 Aligned_cols=62 Identities=32% Similarity=0.431 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
+.++.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 45778899999999999999999999999999999999999999999999999999998754
No 44
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=128.18 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
||.|++||.+|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997553
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=135.80 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhC---------------cccceEEEeecchhhHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~Lg---------------Ls~rQVkvWFQNRRak~Kr~~~r 195 (528)
.+++|.|+.||++|+.+||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 46678889999999999999999999999999999999999 99999999999999999987653
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.2e-16 Score=129.87 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
++.+++|++|+.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456778889999999999999977 99999999999999999999999999999999999754
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.9e-16 Score=130.51 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 138 R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
|.+||.+|+.+||..|..++||+..+|++||+.+||+++||++||||||+|+|+.+.
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 446999999999999999999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=129.61 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.++.|+.||.+|+.+||..|+.++||+..++.+||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4677889999999999999999999999999999999999999999999999999997543
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-16 Score=129.93 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+.|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34478899999999999999999999999999999999999999999999999999754
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=2.2e-16 Score=128.34 Aligned_cols=62 Identities=26% Similarity=0.494 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F---~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
||+|++||.+|+.+||..| ..++||+..++.+||.++||+++||++||||||+|+|++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6778899999999999999 8999999999999999999999999999999999999765443
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-16 Score=130.89 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
.+++|+|++|+.+|+.+||.+|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 456778889999999999999987 59999999999999999999999999999999999765443
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.1e-16 Score=135.75 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999744
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=2.1e-16 Score=147.30 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
+++||+|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678889999999999999999999999999999999999999999999999999999974
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.58 E-value=3.9e-16 Score=130.94 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F---~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
||+|++||.+|+.+||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999986544
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-16 Score=130.53 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
++.+||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 344599999999999999999999999999999999999999999999999998644
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.57 E-value=4.5e-16 Score=121.80 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
+|++||.+|+.+||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3e-16 Score=124.36 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 134 ~kr~R~rfT~eQl~~LE~~F---~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.+++|++|+.+|+.+||..| ..++||+..++.+||.++||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999986
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=2.3e-16 Score=147.83 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
..++||+|++||.+|+.+||..|..++||+..+|.+||++++|+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3566778999999999999999999999999999999999999999999999999999998654
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2e-16 Score=128.92 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=53.4
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F-~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+.+.+++.+|+.+||..| ..++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3445678899999999999 999999999999999999999999999999999999963
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=132.03 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhh---------------------CcccceEEEeecchhhHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~L---------------------gLs~rQVkvWFQNRRak~ 189 (528)
.+++||.|+.|++.|+.+||..|+.++||+..+|++||.+| .|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678889999999999999999999999999999999999 789999999999999999
Q ss_pred HHHHHH
Q 009692 190 KTQLER 195 (528)
Q Consensus 190 Kr~~~r 195 (528)
|+++..
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 976543
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.56 E-value=3.3e-16 Score=144.06 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+++||+|++||.+|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34567789999999999999999999999999999999999999999999999999999974
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=3.9e-16 Score=130.27 Aligned_cols=59 Identities=36% Similarity=0.419 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
+++|++||.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455677999999999999999 99999999999999999999999999999999999754
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=1e-15 Score=128.70 Aligned_cols=59 Identities=37% Similarity=0.473 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
+++|+|++||.+|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 45666889999999999999999 999999999999999999999999999999999983
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-16 Score=126.61 Aligned_cols=57 Identities=35% Similarity=0.454 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHH
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r 195 (528)
..+|..|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+|+++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 358999999999999999999999999999999999999999999999999986543
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=139.70 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.++||+|++||.+|+.+||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466778899999999999999999999999999999999999999999999999999986
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=2.4e-15 Score=120.69 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~-~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
..+||.|+.|+.+|+.+|+..|+. ++||+.+.|+.||.++||++++|++||||||--.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 456888999999999999999999 99999999999999999999999999999997544
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.52 E-value=1e-15 Score=132.27 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhh------------------hC---cccceEEEeecchhhHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~------------------Lg---Ls~rQVkvWFQNRRak~K 190 (528)
+++||.|+.||.+|+.+||..|..++||+..+|++||.. || |++.||++||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 456778889999999999999999999999999999999 88 999999999999999998
Q ss_pred HHHH
Q 009692 191 TQLE 194 (528)
Q Consensus 191 r~~~ 194 (528)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 6553
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.52 E-value=2.4e-15 Score=120.35 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 141 fT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.4e-15 Score=121.31 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 143 ~eQl~~LE~~F-~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
++|+.+||+.| ..++||+..+|.+||++|+|+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999999985
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-15 Score=118.98 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.++.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4578999999999999999999999999999999999999999999999875
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=5e-15 Score=137.37 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 132 ~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3557788999999999999999999999999999999999999999999999999999973
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.47 E-value=6.7e-15 Score=137.31 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.++.||+|++||.+|+.+||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345678899999999999999999999999999999999999999999999999999999754
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.3e-14 Score=116.41 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHHhh
Q 009692 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHEN 198 (528)
Q Consensus 140 rfT~eQl~~LE~~F~---~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~e~ 198 (528)
+|+.+|+.+|+..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987655543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=1e-13 Score=133.04 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhC---------------------cccceEEEeecchhhHH
Q 009692 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQM 189 (528)
Q Consensus 131 ~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~Lg---------------------Ls~rQVkvWFQNRRak~ 189 (528)
.+++||.|+.|++.|+.+||+.|..++||+...|++||..++ |++.||++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356678888999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 009692 190 KT 191 (528)
Q Consensus 190 Kr 191 (528)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-12 Score=108.80 Aligned_cols=58 Identities=29% Similarity=0.411 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~---~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
+.|+.+++.+|+.+|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 99999999999999999999999999999999999876554
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.17 E-value=4.4e-12 Score=123.50 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhC---------------------cccceEEEeecchhhH
Q 009692 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (528)
Q Consensus 130 ~~~k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~Lg---------------------Ls~rQVkvWFQNRRak 188 (528)
..+++||.|+.|++.|+.+||..|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3455677888899999999999999999999999999999998 8999999999999987
Q ss_pred HH
Q 009692 189 MK 190 (528)
Q Consensus 189 ~K 190 (528)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=9.9e-12 Score=100.28 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhH
Q 009692 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (528)
Q Consensus 143 ~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak 188 (528)
.+|+..||..|..+++|+.+++..||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 78
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.06 E-value=1.1e-11 Score=128.20 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
++.+..++.+|+..||+.|+.++||+..+|++||+++||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45566799999999999999999999999999999999999999999999999986
No 79
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=98.93 E-value=4.2e-09 Score=101.51 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCceecc-C-CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 009692 339 MFLELALAAMDELVKMAQTDEPLWIRSF-E-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (528)
Q Consensus 339 ~~~elA~~Am~El~~~a~~~eplWi~~~-~-~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LVe~l 416 (528)
-.+.+|++||+|++++.+ ++.-|.... + .| ..+ |.+.++. .| -.=|..++|-..+..|.+.|
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g--v~v----y~~~~~~------~g---~~~k~~~~v~~~~~~v~~~l 74 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNG--DKV----MSKVVPD------VG---KVFRLEVVVDQPMERLYEEL 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS--CEE----EEEECSS------SC---EEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC--cEE----EEEEcCC------Cc---eEEEEEEEEcCCHHHHHHHH
Confidence 357999999999999986 345797762 3 33 222 3343321 12 23488899999999999998
Q ss_pred -cC---hhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhh-hcccccccCceeeEEeeeeeecCCeEEEEEeec
Q 009692 417 -MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAEL-QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (528)
Q Consensus 417 -mD---~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aEl-qvlSPLVP~Re~~FLRyckq~~~G~WaVvDVSl 491 (528)
+| +.+|-..| ..+..++.|+.. + .+.|.-. ..+.++|..|||.++||.++. +|.++|+-.|+
T Consensus 75 ~~d~~~r~~Wd~~~----~~~~vle~~~~~-------t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 75 VERMEAMGEWNPNV----KEIKVLQKIGKD-------T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTTGGGTTTSCTTC----SEEEEEEECSSS-------E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred HhccchhhhcCcch----heEEEEEecCCC-------e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 46 45677665 335666666532 2 3555322 123468999999999999985 68899999998
Q ss_pred cCccCCCCCCCcccccccCCcceeeecCCC--ccEEEEC
Q 009692 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVIYY 528 (528)
Q Consensus 492 d~~~~~~~~~~~~~crr~PSGclIqdm~nG--ysKVtwv 528 (528)
+.-. -+....++|...+++|++|+++++| .|+|||+
T Consensus 142 ~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~ 179 (221)
T 3p0l_A 142 DFGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWL 179 (221)
T ss_dssp CCTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEE
T ss_pred cCCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEE
Confidence 7321 1212348999999999999999988 9999995
No 80
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=98.91 E-value=2.8e-09 Score=104.63 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhhcCCCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHH-HHhcChhh
Q 009692 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (528)
Q Consensus 343 lA~~Am~El~~~a~~~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e~lmD~~~ 421 (528)
++..++.||++.+.....-|....+.... ++|.+.. +.|...-.=|..++|-..+..++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi---------~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNT---------DLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSC---------EEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCe---------EEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 34467777777765445569765433201 2221111 12333335577777777676764 78999999
Q ss_pred HhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeee-ecCCeEEEEEeeccCccCCCCC
Q 009692 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (528)
Q Consensus 422 W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq-~~~G~WaVvDVSld~~~~~~~~ 500 (528)
|-..|-. +..|+.|+.. ..++|..+..+.| ++.|||.++|+.++ .++|.++|+-.|++.-. .+..
T Consensus 101 Wd~~~~~----~~vle~id~~--------~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDEDFVQ----WKVVETLDRQ--------TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTTBCC----CEEEEEEETT--------EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhhhce----EEEEEEcCCC--------cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 9888744 5888887632 2456666666665 79999999999986 68999999999998532 1222
Q ss_pred CCcccccccCCcceeeecCCCccEEEEC
Q 009692 501 PAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 501 ~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.++|...+++|++|+++.+|.|+|||+
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~ 193 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHI 193 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEE
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEE
Confidence 579999999999999999999999996
No 81
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=98.75 E-value=4.4e-08 Score=94.71 Aligned_cols=163 Identities=9% Similarity=0.114 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCceeccC--CCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEEechhHHH-H
Q 009692 338 SMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-E 414 (528)
Q Consensus 338 ~~~~elA~~Am~El~~~a~~~eplWi~~~~--~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~m~~~~LV-e 414 (528)
...++++..|+++++++... .--|....+ .+ ..+ |.+..+. .|. .-|..++|-..+..|. +
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g--~~v----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG--DTV----YTIEVPF------HGK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC--CEE----EEEEETT------TEE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC--CEE----EEEecCC------CCc---eEEEEEEecCCHHHHHHH
Confidence 56789999999999999863 346976532 23 122 3443321 121 2388889988999998 7
Q ss_pred HhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcc--cccccCceeeEEeeeeeecCCeEEEEEeecc
Q 009692 415 TLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (528)
Q Consensus 415 ~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvl--SPLVP~Re~~FLRyckq~~~G~WaVvDVSld 492 (528)
+|+|.+...+--+. +..+..|+.|..+ + .+ +-++..+ .++|+.|||.++|+++.. ++.|+||-.|++
T Consensus 85 ~~~d~~~r~~Wd~~-~~~~~vle~~~~~-------t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 153 (229)
T 1em2_A 85 VILQPERMVLWNKT-VTACQILQRVEDN-------T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATS 153 (229)
T ss_dssp TTTCHHHHTTTCTT-EEEEEEEEEETTT-------E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECC
T ss_pred HHhCccchhhcccc-cceEEEEEecCCC-------e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEeccc
Confidence 77776543333333 2446777777633 2 22 3335544 568999999999999997 667999999997
Q ss_pred CccCCCCCCCcccccccCCcceeeecC--CCccEEEEC
Q 009692 493 TIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVIYY 528 (528)
Q Consensus 493 ~~~~~~~~~~~~~crr~PSGclIqdm~--nGysKVtwv 528 (528)
.-. .+....++|....++|++|++++ +|.|+|||+
T Consensus 154 ~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~ 190 (229)
T 1em2_A 154 HSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI 190 (229)
T ss_dssp CTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE
T ss_pred CCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEE
Confidence 432 12223489999999999999987 678999985
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.54 E-value=2.7e-07 Score=89.12 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=87.6
Q ss_pred eeecceeEEechhHHHHHhcChh---hHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhc-ccccccCceeeEE
Q 009692 398 ASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFL 473 (528)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~---~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqv-lSPLVP~Re~~FL 473 (528)
.-|..++|-..+..|++.|+|.. +|-..|- .+..|+.|.. .-.+.|.-+.- +-|+|..|||.++
T Consensus 68 ~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~----~~~vle~id~--------~~~I~y~~~~~~~~~~v~~RDfv~~ 135 (224)
T 1jss_A 68 LYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMT----SLDVLEHFEE--------NCCVMRYTTAGQLLNIISPREFVDF 135 (224)
T ss_dssp EEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEE----EEEEEEECST--------TEEEEEEEECCBTTTTBCCEEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHhCccccccccccee----eEEEEEEcCC--------CeEEEEEEcccccCCCCCCCeEEEE
Confidence 44888899899999999999965 8877662 3466665542 12445544443 3457999999999
Q ss_pred eeeeeecCCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCC--ccEEEEC
Q 009692 474 RFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVIYY 528 (528)
Q Consensus 474 Ryckq~~~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nG--ysKVtwv 528 (528)
|+.++.++| ++|+-+|++.-.. ...++|..-.++|++|+++++| .|+|||+
T Consensus 136 r~~~~~~~~-~vi~~~Sv~hp~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~ 188 (224)
T 1jss_A 136 SYTVGYEEG-LLSCGVSVEWSET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGY 188 (224)
T ss_dssp EEEEEETTE-EEEEEEECCCCCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEcCCe-EEEEEeeeecCCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEE
Confidence 999998777 8889999984322 2358999999999999999876 8999995
No 83
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.50 E-value=4.3e-09 Score=74.93 Aligned_cols=22 Identities=45% Similarity=0.835 Sum_probs=19.0
Q ss_pred ceEEEeecchhhHHHHHHHHHh
Q 009692 176 RQVKFWFQNRRTQMKTQLERHE 197 (528)
Q Consensus 176 rQVkvWFQNRRak~Kr~~~r~e 197 (528)
+||+|||||||+||||++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998776643
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.45 E-value=4.1e-07 Score=90.79 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=88.0
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccc--cccCceeeEEeeee
Q 009692 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (528)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSP--LVP~Re~~FLRyck 477 (528)
|..++|-..+..|.+.|+|.+.+.+=-+.+ ..+..++-|+.. .++| ++..++| +++.|||..||+.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~~---------~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDED---------DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEETT---------EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCCC---------eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 778889999999999999987544444432 335666666532 3566 5666775 79999999999998
Q ss_pred ee-cCCe-EEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 478 q~-~~G~-WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
.. .+|. ++|+-+|++.-. -+....++|...+|+|++|+++++|-||||++
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~ 211 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYY 211 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEE
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEE
Confidence 74 4774 999999987321 12123489999999999999999999999985
No 85
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.44 E-value=4.3e-07 Score=86.22 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=89.9
Q ss_pred eeecceeEE-echhHHHHHhcC---hhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEE
Q 009692 398 ASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (528)
Q Consensus 398 ASR~sgvV~-m~~~~LVe~lmD---~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FL 473 (528)
.-|..++|- ..+..+.+.|+| ..+|...+ ...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-------~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-------KELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-------EEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-------hhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568889995 999999999999 56777665 44455553 232 4678888888886 99999999
Q ss_pred eeeeeec-CC--eEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 474 RFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 474 Ryckq~~-~G--~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
|+++... +| .|+|+-.|++.-. .+....++|...+++|++|++..+|.|+||++
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~ 174 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMY 174 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEE
T ss_pred EEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEE
Confidence 9999875 66 5999999987432 12223478999999999999999999999985
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.95 E-value=2.8e-05 Score=72.45 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=84.6
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeee
Q 009692 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (528)
Q Consensus 398 ASR~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyck 477 (528)
.=|..++|-..+..+.+.|+|.+...+--|.+ ...+||.. . ++ -.++|.++..+-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 46778899899999999999987766666654 44555655 2 12 3456777766655 7999999999999
Q ss_pred eecCCeEEEEEeeccCccCC-CCCCCcccccccCCcceeeecCCCccEEEEC
Q 009692 478 QHAEGVWAVVDVSIDTIRET-SGAPAFVNCRRLPSGCVVQDMPNGYSKVIYY 528 (528)
Q Consensus 478 q~~~G~WaVvDVSld~~~~~-~~~~~~~~crr~PSGclIqdm~nGysKVtwv 528 (528)
+..+|...|+=.+ + .+. +....++|.+.+++|++|++ .+|.|||||+
T Consensus 97 ~~~~g~~~i~~~~-~--~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~ 144 (189)
T 3qsz_A 97 KAGDGAITVRVEA-V--PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQ 144 (189)
T ss_dssp ECTTSCEEEEEEE-C--TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEE
T ss_pred ECCCCeEEEEEEc-C--CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEE
Confidence 9888876554333 2 111 11234789999999999999 9999999984
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=97.71 E-value=8e-05 Score=72.96 Aligned_cols=164 Identities=13% Similarity=0.265 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCCceeccCCCcccccChhhhhhhcCCCCCCCCCCCceeeeecceeEE-echhHHHHH
Q 009692 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (528)
Q Consensus 340 ~~elA~~Am~El~~~a~~---~eplWi~~~~~g~~e~Ln~~eY~~~F~~~~g~~~~g~~~EASR~sgvV~-m~~~~LVe~ 415 (528)
+.+++...+.|.+..|.. ++.-|-...+.. . .++|.+.. ...|...-.=|..++|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~-g--------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEG-E--------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEET-T--------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCC-C--------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 445555666665555543 235687653221 0 13332211 01232211235556665 778999999
Q ss_pred hcCh---hhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeec----C--CeEEE
Q 009692 416 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 486 (528)
Q Consensus 416 lmD~---~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~----~--G~WaV 486 (528)
|+|. .+|-..+ ..+..++.|..+ . .+.|..+..+.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~~----~~~~vle~i~~~------~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETTI----ENFHVVETLADN------A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCSE----EEEEEEEEEETT------E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhhc----ceeEEEEEcCCC------C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9995 5666554 445777766532 2 6788888888885 889999999999883 3 59999
Q ss_pred EEeeccCccCCCCCCCcccccc---cCCcceeeecCC--------CccEEEEC
Q 009692 487 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVIYY 528 (528)
Q Consensus 487 vDVSld~~~~~~~~~~~~~crr---~PSGclIqdm~n--------GysKVtwv 528 (528)
+..|++.-. -+....++|... +.+|++|++..+ +.|+|||+
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~ 211 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYV 211 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEE
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEE
Confidence 999998432 111223678774 678999998733 46999985
No 88
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.85 E-value=0.047 Score=45.25 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHhhhCcccceEEEeecchhhH--------HHHHHHHHhhHHHHHhhHHHH
Q 009692 139 HRHTPQQIQELESLFKEC-PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ--------MKTQLERHENSLLRQENDKLR 209 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~-~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak--------~Kr~~~r~e~~~l~~en~~L~ 209 (528)
.+||.++....-..+... . ....++|+.+|+++..|..|.+.-+.. ........+...|++++..|+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~~~~~g~~~~~~~~~~~~~~~ei~~L~~e~~~L~ 79 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQR 79 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHHHCCCSTTCSCCCCHHHHTHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHHHhhcCcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 468888876665555322 1 135689999999999999997543321 012223344455555555555
Q ss_pred hhhhhHHhh
Q 009692 210 AENMSIRDA 218 (528)
Q Consensus 210 ~en~~l~e~ 218 (528)
.||.-|+.+
T Consensus 80 ~e~~~Lkk~ 88 (97)
T 2jn6_A 80 ARTRHPAES 88 (97)
T ss_dssp GTTSCCCGG
T ss_pred HHHHHHHHH
Confidence 555555443
No 89
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.90 E-value=0.096 Score=42.08 Aligned_cols=39 Identities=33% Similarity=0.420 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeec
Q 009692 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
-.+.|++.|+..+.+.......|+.+..|+..||+-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999994
No 90
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.66 E-value=1.7 Score=35.91 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=17.9
Q ss_pred hHHHHHHHHhHHHHH----HHhhhhhh
Q 009692 241 QHLRIENARLKDELD----RVCALAGK 263 (528)
Q Consensus 241 ~~L~~EN~~Lk~el~----r~~~~~~~ 263 (528)
..|..||.+||+|.. |++++++|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999985 66666665
No 91
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=80.42 E-value=0.64 Score=45.87 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHhHHHHH
Q 009692 239 EEQHLRIENARLKDELD 255 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~ 255 (528)
+.++|+.||++||+.|+
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44557788888888664
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=71.72 E-value=5.8 Score=33.28 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=44.3
Q ss_pred CcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhH
Q 009692 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (528)
Q Consensus 172 gLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk 251 (528)
||+..+|.-|=|-||+-.-|-..+.....-..+...|..++..+.. +..+|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777777666666554444444444444556666666666654 5567889999999
Q ss_pred HHHHHHhh
Q 009692 252 DELDRVCA 259 (528)
Q Consensus 252 ~el~r~~~ 259 (528)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.27 E-value=11 Score=29.26 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHH
Q 009692 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (528)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~ 255 (528)
.++.....+..+.+.|..+|..|...+ ..|+.|+..||+-|.
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 345566778888888999888888744 467788888887553
No 94
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.38 E-value=9.2 Score=31.83 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.4
Q ss_pred HHHHHhhHHHHhhhhhHHh
Q 009692 199 SLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 199 ~~l~~en~~L~~en~~l~e 217 (528)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555553
No 95
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.33 E-value=14 Score=28.19 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHH
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el 254 (528)
+......|..+.+.|..+|..|... ...|+.|++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 4445666777888888888877763 345777777777654
No 96
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=64.82 E-value=4.3 Score=26.10 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=14.2
Q ss_pred hHHHHHHHHhHHHHHHH
Q 009692 241 QHLRIENARLKDELDRV 257 (528)
Q Consensus 241 ~~L~~EN~~Lk~el~r~ 257 (528)
++|...|+|||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 47889999999998654
No 97
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=63.33 E-value=16 Score=32.90 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=30.8
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCC
Q 009692 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (528)
Q Consensus 400 R~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G 442 (528)
..+.+|--.+..+-+++-|.++|-+.||.+ ...+|++.+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~ 44 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRD 44 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEEC
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecC
Confidence 345566678888999999999999999986 556677654
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.02 E-value=9.4 Score=32.26 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q 009692 221 NPICTNCGGPAI 232 (528)
Q Consensus 221 ~~~C~~Cgg~~~ 232 (528)
...||.||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446999998764
No 99
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.73 E-value=4.1 Score=34.64 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHH
Q 009692 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRV 257 (528)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~ 257 (528)
..-+++-.|....+++..||.+++..-... | +-.-++..+..+|+.||.+|+.|-+.-
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566667777777777777777653211 0 111123446678888999888886543
No 100
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.33 E-value=18 Score=29.41 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHHhhh
Q 009692 246 ENARLKDELDRVCAL 260 (528)
Q Consensus 246 EN~~Lk~el~r~~~~ 260 (528)
+...|+.|+..+..+
T Consensus 58 ~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 58 KVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555554443
No 101
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=56.26 E-value=0.15 Score=42.88 Aligned_cols=45 Identities=11% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHhhcC--CCCCH-HHHHHHHhhhCcccceEEEeec
Q 009692 139 HRHTPQQIQELESLFKEC--PHPDE-KQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~--~~Ps~-~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
.+||.++....-..+... .|.+. ....++|+++|+++..|..|.+
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 468988876554444321 12222 3567899999999999988853
No 102
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.13 E-value=21 Score=28.47 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.4
Q ss_pred HHHHHhHHHHHHH
Q 009692 245 IENARLKDELDRV 257 (528)
Q Consensus 245 ~EN~~Lk~el~r~ 257 (528)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 103
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.04 E-value=19 Score=27.64 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHh
Q 009692 195 RHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (528)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777776666664
No 104
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.11 E-value=32 Score=25.76 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=27.1
Q ss_pred HHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHh
Q 009692 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (528)
Q Consensus 200 ~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~ 258 (528)
.++.+++.|.+.|.+|.+++. .-+.|-..|++||+++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 466677777777777777653 35567788999998863
No 105
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=48.05 E-value=43 Score=29.59 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=59.2
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeec
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~ 480 (528)
.+.+|--.+..+-+.+-|.++|...||..+.- ...+ +|....+.|++.+-. ...|+.|..|+...-+
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~ 77 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADKE 77 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEETT
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcCC
Confidence 35567778889999999999999999986542 1112 233334445555433 2348888888876543
Q ss_pred CCeEEEEEeeccCccCCCCCCCcccccccCCcceeeecCCCccEEEE
Q 009692 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVIY 527 (528)
Q Consensus 481 ~G~WaVvDVSld~~~~~~~~~~~~~crr~PSGclIqdm~nGysKVtw 527 (528)
+. . |+..+. +++........+ -+++.++|-|+|+|
T Consensus 78 ~~-~--I~~~~~---~g~~~~~l~g~w------~f~p~~~g~t~V~~ 112 (161)
T 3p9v_A 78 AG-K--ITWSPI---KGEGNGVVSGSW------TLSAKGDNATAVKF 112 (161)
T ss_dssp TT-E--EEEEEC---TTSTTEEEEEEE------EEEESSSSCEEEEE
T ss_pred CC-E--EEEEEe---cCccceeEEEEE------EEEECCCCeEEEEE
Confidence 33 2 222221 111100011222 35677788899998
No 106
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=47.87 E-value=1.8 Score=37.51 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=37.5
Q ss_pred CcccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhH
Q 009692 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (528)
Q Consensus 172 gLs~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk 251 (528)
||++.+|.-.=|-||.-.-|...+.....-..+.+.|..++..|.. +..+|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~---------------------e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ---------------------EVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS---------------------TTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 5666555544444444433333344444444455666666544443 4456778888888
Q ss_pred HHHHHHh
Q 009692 252 DELDRVC 258 (528)
Q Consensus 252 ~el~r~~ 258 (528)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8887654
No 107
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=46.94 E-value=9 Score=32.60 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhh
Q 009692 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (528)
Q Consensus 137 ~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRa 187 (528)
+|.+||.++...+-..+....... ..++|+++|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999887777775555443 236899999999999888765443
No 108
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=46.93 E-value=7.7 Score=31.28 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEee
Q 009692 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWF 182 (528)
++.+..|+.++....-..+... . ...++|+++|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 4455679998866555556432 1 25688999999999988885
No 109
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.34 E-value=19 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhHHHHHHHhhhh
Q 009692 240 EQHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 240 ~~~L~~EN~~Lk~el~r~~~~~ 261 (528)
...|..||..|.+|+.|+..++
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3468899999999999998875
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.93 E-value=73 Score=24.39 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=17.1
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~ 219 (528)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777643
No 111
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=42.25 E-value=42 Score=27.43 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=27.0
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeC
Q 009692 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISS 441 (528)
Q Consensus 402 sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~ 441 (528)
+..|-..+..+-+.|.|.+.|.+-+|.+ ..++++..
T Consensus 7 ~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~ 42 (147)
T 2d4r_A 7 ERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAR 42 (147)
T ss_dssp EEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEE
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEe
Confidence 3455667788999999999999999986 33555553
No 112
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.68 E-value=6.3 Score=29.36 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeec
Q 009692 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 138 R~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
|..||+++.......+.... .......++|+++|+++..|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 34689888777755554332 2111256899999999999999954
No 113
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.61 E-value=27 Score=34.44 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.1
Q ss_pred hhHHHHHHHHhHHHHHHHhh
Q 009692 240 EQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 240 ~~~L~~EN~~Lk~el~r~~~ 259 (528)
.++++.|..+||+|++++..
T Consensus 77 Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34577889999999999864
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.01 E-value=13 Score=29.96 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~ 192 (528)
.+++.|..+|...|-... .-.++|+.+|++...|+.+...=|.+.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 377888888877654332 356899999999999987766555544443
No 115
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.05 E-value=86 Score=22.71 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHhHHHHHHHhh
Q 009692 239 EEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~~ 259 (528)
++|.|..--+.|++|+.|+..
T Consensus 25 deqnlekiianlrdeiarlen 45 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHH
Confidence 556666566777788777654
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.06 E-value=57 Score=25.92 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHhHHHHHH
Q 009692 239 EEQHLRIENARLKDELDR 256 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r 256 (528)
+.+.|+.++..|..|+..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444566666666666643
No 117
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.92 E-value=6.2 Score=27.44 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchh
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRR 186 (528)
.++.++...+...+... . ...++|+.+|++...|..|++...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35666666665556543 2 356899999999999999986544
No 118
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.28 E-value=69 Score=26.38 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHhhhhh
Q 009692 242 HLRIENARLKDELDRVCALAG 262 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~~~~~~ 262 (528)
.|..|++.||+|++++..+|.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888777653
No 119
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=36.22 E-value=23 Score=34.64 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHHhhhh
Q 009692 243 LRIENARLKDELDRVCALA 261 (528)
Q Consensus 243 L~~EN~~Lk~el~r~~~~~ 261 (528)
...+...|++|.+|++.++
T Consensus 41 ~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 41 LESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567788889999988864
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.93 E-value=99 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHhHHHHHHHhhhhhh
Q 009692 239 EEQHLRIENARLKDELDRVCALAGK 263 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~~~~~~ 263 (528)
..++...+-..|++|++|++....+
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667788888888888775433
No 121
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=34.67 E-value=77 Score=28.62 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCC
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSG 442 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G 442 (528)
.+.+|--.+..+-+.+-|.++|-+.+|.+ ...+|+..+
T Consensus 7 ~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~ 44 (169)
T 3tvq_A 7 NSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQD 44 (169)
T ss_dssp EEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecC
Confidence 44556667778999999999999999997 445566543
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.65 E-value=45 Score=28.36 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=12.8
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHh
Q 009692 195 RHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (528)
...-..|..+.++|++||..|+.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666555543
No 123
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=32.64 E-value=28 Score=29.90 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=43.3
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeCCCCCCCCcceehhhhhhhcccccccCceeeEEeeeeeec
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~G~~g~~~GalqlM~aElqvlSPLVP~Re~~FLRyckq~~ 480 (528)
.+..|-..+..+-+.+.|.++|.+.+|.+.. ++|+..+..|. |. -+.+++.+- .-+.++-|..|+..+-.
T Consensus 6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~----~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~~ 75 (148)
T 1t17_A 6 VTKVLPYTPDQLFELVGDVDAYPKFVPWITG----MRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDKD 75 (148)
T ss_dssp EEEEESSCTHHHHHHHTTTTCCSSCCSSCCC----CCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEETT
T ss_pred EEEEecCCHHHHHHHHHHHhhHHhhCCCcCe----eEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcCC
Confidence 4556667888999999999999999999733 34554322110 11 134444442 23556667777775433
Q ss_pred C
Q 009692 481 E 481 (528)
Q Consensus 481 ~ 481 (528)
+
T Consensus 76 ~ 76 (148)
T 1t17_A 76 A 76 (148)
T ss_dssp T
T ss_pred C
Confidence 3
No 124
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=32.60 E-value=74 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=20.5
Q ss_pred hhHHHHHhhHHHHhhhhhHHhhhcC
Q 009692 197 ENSLLRQENDKLRAENMSIRDAMRN 221 (528)
Q Consensus 197 e~~~l~~en~~L~~en~~l~e~~~~ 221 (528)
....|.++..+|+-||+.|+..+..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999975
No 125
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.77 E-value=34 Score=29.07 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~ 193 (528)
.+++.|..++...|...- .-.++|..+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888764432 3568999999999999998876666665543
No 126
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.53 E-value=15 Score=24.85 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecc
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQN 184 (528)
.++.++...+...+.... ...++|+.+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHhh
Confidence 467777755555564332 2568999999999988888643
No 127
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=30.41 E-value=90 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=29.1
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeEEeeC
Q 009692 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISS 441 (528)
Q Consensus 401 ~sgvV~m~~~~LVe~lmD~~~W~~~Fp~iVs~a~T~~Vis~ 441 (528)
.+.+|--.+..+-+.+-|.+.|-+.+|.+ .-++|+..
T Consensus 9 ~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~ 45 (172)
T 3tfz_A 9 HTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEE 45 (172)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEec
Confidence 44566667888899999999999999996 55566654
No 128
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.13 E-value=40 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~ 194 (528)
.+++.|..++...|-..- .-.++|..+|+++..|+.+...-|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887754332 35689999999999999888766666665443
No 129
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.38 E-value=1.1e+02 Score=31.83 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHhHHHHHHHhh
Q 009692 238 LEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 238 ~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
-+.++|+.||+||+++++.+..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhh
Confidence 4677899999999999886543
No 130
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.12 E-value=54 Score=22.53 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.6
Q ss_pred hHHHHHHHHhHHHHHHHhhhh
Q 009692 241 QHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 241 ~~L~~EN~~Lk~el~r~~~~~ 261 (528)
..|..+|.-|++|+.|+.+++
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 358889999999999998875
No 131
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.84 E-value=1.7 Score=39.60 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCH
Q 009692 133 PRKKRYHRHTPQQIQELESLFKECPHPDE 161 (528)
Q Consensus 133 k~kr~R~rfT~eQl~~LE~~F~~~~~Ps~ 161 (528)
+.||.|+.|+.+|++.|+..|+.++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 45677889999999999999999999874
No 132
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=26.69 E-value=89 Score=25.01 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHHHHHHH
Q 009692 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (528)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr~~~r~ 196 (528)
+....-.|+.+|||+..--.+ |+ .|||.+||.++.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHHH
Confidence 455666789999998542111 11 48999999776554
No 133
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.53 E-value=17 Score=26.99 Aligned_cols=46 Identities=9% Similarity=-0.096 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~K 190 (528)
.+++.+..+|...|-... .-.++|..+|+++..|+.+...-|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478889999988764331 3568999999999988876654444333
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.49 E-value=30 Score=29.44 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhHHHH
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak~Kr 191 (528)
.+++.|..++. .|-.. ..-.++|+.+|++...|+.+.+.=|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777777777 33322 245689999999999998776544444443
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.30 E-value=66 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHhhhhhHHhhhc
Q 009692 199 SLLRQENDKLRAENMSIRDAMR 220 (528)
Q Consensus 199 ~~l~~en~~L~~en~~l~e~~~ 220 (528)
.+|-++.+.|+.||.-||+++.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 3445555666666666665554
No 136
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.93 E-value=1.3e+02 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHhHHHHHHHhhhhhh
Q 009692 239 EEQHLRIENARLKDELDRVCALAGK 263 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~~~~~~ 263 (528)
..+||...+....+|++|+.+++..
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888889999999887644
No 137
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.92 E-value=48 Score=39.05 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHhhhcCCCCCCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
.+.+...++.+++++..|.+.+.+...... .++.-...+|..||+.|+++++.+..
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544432110 01112233688888888888887764
No 138
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.85 E-value=1.7e+02 Score=23.81 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHhhh
Q 009692 242 HLRIENARLKDELDRVCAL 260 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~~~~ 260 (528)
.|+.||..|++-++.+..+
T Consensus 52 ~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 52 RLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777666665544
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.79 E-value=1.5e+02 Score=24.42 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHH
Q 009692 242 HLRIENARLKDELDRV 257 (528)
Q Consensus 242 ~L~~EN~~Lk~el~r~ 257 (528)
.|..||+.|+.+++.+
T Consensus 47 ~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 47 ELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555444433
No 140
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=22.65 E-value=19 Score=27.44 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCCCCCCccCCCChhhhHHHHHHHHhHHHHHHHhh
Q 009692 225 TNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 225 ~~Cgg~~~~~~~~~e~~~L~~EN~~Lk~el~r~~~ 259 (528)
..|+.|+.--..-+|.|+|-.|-.+|+.||.-++.
T Consensus 21 ~DC~~P~~~~rTLLEi~KL~LEIQKL~~EL~glsk 55 (65)
T 2yf2_A 21 SDCHVPTEDVKTLLEIRKLFLEIQKLKVELQGLSK 55 (65)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcchhH
Confidence 45777764333456888999999999999987654
No 141
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.16 E-value=1.2e+02 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHhHHHHHHHhh
Q 009692 239 EEQHLRIENARLKDELDRVCA 259 (528)
Q Consensus 239 e~~~L~~EN~~Lk~el~r~~~ 259 (528)
+..-|+.||..||+||+.-+.
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHH
Confidence 444577888888888765443
No 142
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.01 E-value=35 Score=28.33 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecc
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQN 184 (528)
..+|+.|.++|...++... -.++|+.+++++..|+.+.++
T Consensus 33 ~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999988764332 478999999999998876543
No 143
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.35 E-value=1e+02 Score=26.91 Aligned_cols=47 Identities=9% Similarity=0.057 Sum_probs=24.7
Q ss_pred ccceEEEeecchhhHHHHHHHHHhhHHHHHhhHHHHhhhhhHHhhhc
Q 009692 174 ETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMR 220 (528)
Q Consensus 174 s~rQVkvWFQNRRak~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~ 220 (528)
-....+.|-+|+-...-+.....+..+-++..++|+.|...|.+.+.
T Consensus 42 ~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 42 QDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666554444444444444445556666666666666443
No 144
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=21.23 E-value=3.7 Score=36.72 Aligned_cols=43 Identities=33% Similarity=0.590 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeec
Q 009692 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (528)
Q Consensus 140 rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQ 183 (528)
.++.+.+..|.+.-..-++|..+-+.+|+-++ |..-+|++|.|
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel~vEi-LEkG~VRfWlQ 60 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQ 60 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEE
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhhhHHH-HhcCcEEEEEE
Confidence 46677888888888888999999888888877 77789999987
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.89 E-value=94 Score=30.55 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=12.4
Q ss_pred HHHhhHHHHHhhHHHHhhhhhHHh
Q 009692 194 ERHENSLLRQENDKLRAENMSIRD 217 (528)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (528)
.+.+...|.+.|++|.++.+.+++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~ 82 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQ 82 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444
No 146
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.84 E-value=90 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=16.9
Q ss_pred hHHHHHHHHhHHHHHHHhhhh
Q 009692 241 QHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 241 ~~L~~EN~~Lk~el~r~~~~~ 261 (528)
..|..+|.-|.+|+.|+..++
T Consensus 10 EeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 10 XEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 357788899999999988775
No 147
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.27 E-value=97 Score=21.31 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.5
Q ss_pred hHHHHHHHHhHHHHHHHhhhh
Q 009692 241 QHLRIENARLKDELDRVCALA 261 (528)
Q Consensus 241 ~~L~~EN~~Lk~el~r~~~~~ 261 (528)
..|..+|..|.+|+.|+..++
T Consensus 11 EeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 11 EEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 358889999999999998875
No 148
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.25 E-value=47 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHh----hh--CcccceEEEeecc
Q 009692 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSK----RL--CLETRQVKFWFQN 184 (528)
Q Consensus 135 kr~R~rfT~eQl~~LE~~F-~~~~~Ps~~~r~eLA~----~L--gLs~rQVkvWFQN 184 (528)
+++|.++|.+|...+-..+ +.++..+.. +||+ ++ +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5567889999999999988 667666554 4455 67 6676777666533
No 149
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.22 E-value=3.5e+02 Score=22.14 Aligned_cols=10 Identities=50% Similarity=0.654 Sum_probs=4.5
Q ss_pred HHHHHHHhHH
Q 009692 243 LRIENARLKD 252 (528)
Q Consensus 243 L~~EN~~Lk~ 252 (528)
|+.||..|+.
T Consensus 57 Lk~en~~L~e 66 (83)
T 1wlq_A 57 LRKENKDLAE 66 (83)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 150
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.10 E-value=21 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhhhCcccceEEEeecchhhH
Q 009692 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (528)
Q Consensus 139 ~rfT~eQl~~LE~~F~~~~~Ps~~~r~eLA~~LgLs~rQVkvWFQNRRak 188 (528)
..+|+.|.++|...++.. .-.++|+.+|++...|+.+.++=+.|
T Consensus 20 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 458999999998854322 35689999999999888665543333
Done!