Query 009693
Match_columns 528
No_of_seqs 274 out of 1476
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 16:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 6.8E-31 1.5E-35 257.9 4.6 105 127-246 7-112 (238)
2 PLN03212 Transcription repress 100.0 6.3E-30 1.4E-34 252.2 6.0 121 101-244 6-126 (249)
3 PLN03091 hypothetical protein; 99.9 4.9E-28 1.1E-32 253.7 5.6 108 123-244 8-115 (459)
4 PF13921 Myb_DNA-bind_6: Myb-l 99.6 4E-15 8.6E-20 116.6 5.4 60 132-201 1-60 (60)
5 KOG0049 Transcription factor, 99.5 6.5E-15 1.4E-19 160.2 5.5 111 121-244 352-471 (939)
6 KOG0049 Transcription factor, 99.4 3.6E-14 7.8E-19 154.5 1.6 103 127-243 303-408 (939)
7 COG5147 REB1 Myb superfamily p 99.3 3.1E-13 6.8E-18 146.1 2.4 107 124-245 15-121 (512)
8 PF00249 Myb_DNA-binding: Myb- 99.3 8.3E-13 1.8E-17 100.0 2.8 45 129-175 1-46 (48)
9 KOG0050 mRNA splicing protein 99.2 1.8E-12 3.9E-17 138.8 -0.8 102 127-244 5-106 (617)
10 KOG0051 RNA polymerase I termi 99.1 5.7E-11 1.2E-15 130.2 5.0 107 128-244 383-510 (607)
11 smart00717 SANT SANT SWI3, AD 99.0 3.6E-10 7.8E-15 82.2 4.2 45 129-175 1-45 (49)
12 PLN03091 hypothetical protein; 98.9 9E-10 1.9E-14 117.2 5.1 52 122-176 60-111 (459)
13 PLN03212 Transcription repress 98.9 4E-10 8.8E-15 112.5 2.0 51 122-175 71-121 (249)
14 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.1E-09 2.4E-14 78.7 3.7 43 131-175 1-43 (45)
15 PF00249 Myb_DNA-binding: Myb- 98.7 2.3E-09 5.1E-14 81.2 -1.0 47 190-241 1-48 (48)
16 smart00717 SANT SANT SWI3, AD 98.5 2.6E-08 5.7E-13 72.4 1.2 47 190-242 1-48 (49)
17 KOG0048 Transcription factor, 98.5 5.9E-08 1.3E-12 96.1 4.0 52 121-175 54-105 (238)
18 PF13921 Myb_DNA-bind_6: Myb-l 98.4 3.9E-08 8.4E-13 77.1 0.1 47 193-245 1-47 (60)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 1.8E-07 4E-12 67.1 1.0 43 192-240 1-44 (45)
20 COG5147 REB1 Myb superfamily p 98.1 6.4E-07 1.4E-11 97.8 1.1 109 124-242 286-397 (512)
21 TIGR01557 myb_SHAQKYF myb-like 97.8 2.2E-05 4.7E-10 62.9 4.6 48 128-176 2-53 (57)
22 KOG0457 Histone acetyltransfer 97.3 0.00013 2.8E-09 78.2 3.4 49 126-176 69-117 (438)
23 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00024 5.2E-09 59.2 1.1 56 129-184 1-71 (90)
24 KOG0051 RNA polymerase I termi 96.7 0.0012 2.7E-08 73.6 4.0 111 127-244 306-431 (607)
25 COG5259 RSC8 RSC chromatin rem 96.5 0.0016 3.5E-08 70.7 2.6 46 128-176 278-323 (531)
26 PF08914 Myb_DNA-bind_2: Rap1 96.1 0.0048 1E-07 50.8 3.1 52 129-184 2-62 (65)
27 KOG1279 Chromatin remodeling f 96.1 0.004 8.8E-08 68.7 3.5 55 127-184 251-305 (506)
28 PF13325 MCRS_N: N-terminal re 96.0 0.0072 1.6E-07 59.6 4.2 111 131-247 1-132 (199)
29 PF13873 Myb_DNA-bind_5: Myb/S 95.6 0.017 3.7E-07 47.5 4.2 50 129-178 2-70 (78)
30 KOG0050 mRNA splicing protein 95.6 0.0055 1.2E-07 67.4 1.6 51 122-176 52-102 (617)
31 COG5114 Histone acetyltransfer 94.3 0.026 5.6E-07 59.3 2.4 45 130-176 64-108 (432)
32 TIGR02894 DNA_bind_RsfA transc 94.2 0.023 5E-07 54.4 1.7 46 127-175 2-53 (161)
33 KOG0457 Histone acetyltransfer 92.6 0.041 8.8E-07 59.6 0.6 49 190-243 72-120 (438)
34 PF09111 SLIDE: SLIDE; InterP 92.5 0.087 1.9E-06 48.1 2.4 51 126-176 46-109 (118)
35 TIGR01557 myb_SHAQKYF myb-like 91.8 0.087 1.9E-06 42.3 1.5 44 190-239 3-52 (57)
36 KOG4282 Transcription factor G 91.5 0.088 1.9E-06 54.8 1.5 56 129-184 54-120 (345)
37 PRK13923 putative spore coat p 91.0 0.1 2.2E-06 50.6 1.3 46 127-175 3-54 (170)
38 PF08914 Myb_DNA-bind_2: Rap1 89.8 0.062 1.3E-06 44.3 -1.1 55 190-245 2-61 (65)
39 PF12776 Myb_DNA-bind_3: Myb/S 89.3 0.41 8.8E-06 40.3 3.4 48 131-178 1-63 (96)
40 COG5118 BDP1 Transcription ini 82.7 1.4 2.9E-05 47.8 3.9 76 120-198 356-432 (507)
41 PLN03142 Probable chromatin-re 81.6 1.5 3.2E-05 52.8 4.2 50 127-176 924-983 (1033)
42 PF13325 MCRS_N: N-terminal re 80.1 1.6 3.4E-05 43.5 3.1 51 127-177 71-126 (199)
43 KOG2656 DNA methyltransferase 78.4 2.1 4.5E-05 46.5 3.6 47 129-176 130-180 (445)
44 TIGR02894 DNA_bind_RsfA transc 78.0 0.57 1.2E-05 45.1 -0.6 53 190-244 4-58 (161)
45 KOG1279 Chromatin remodeling f 75.3 3 6.5E-05 46.7 4.0 50 187-242 250-299 (506)
46 COG5114 Histone acetyltransfer 73.8 1.4 2.9E-05 46.9 0.8 46 190-240 63-108 (432)
47 PLN03142 Probable chromatin-re 70.4 5.5 0.00012 48.2 4.9 105 131-242 826-985 (1033)
48 COG5259 RSC8 RSC chromatin rem 69.2 2.6 5.6E-05 46.8 1.6 44 190-239 279-322 (531)
49 PF13837 Myb_DNA-bind_4: Myb/S 68.4 0.55 1.2E-05 39.0 -2.9 51 191-242 2-65 (90)
50 PF11626 Rap1_C: TRF2-interact 62.6 6.8 0.00015 33.6 2.7 24 125-148 43-74 (87)
51 KOG4167 Predicted DNA-binding 61.9 7.7 0.00017 45.3 3.6 52 130-184 620-674 (907)
52 PF13404 HTH_AsnC-type: AsnC-t 59.0 8.3 0.00018 29.0 2.3 39 135-176 3-41 (42)
53 PF12776 Myb_DNA-bind_3: Myb/S 48.0 6.4 0.00014 33.1 0.2 48 192-239 1-60 (96)
54 PLN03162 golden-2 like transcr 45.4 42 0.0009 36.8 5.7 56 123-178 231-288 (526)
55 PRK11179 DNA-binding transcrip 45.3 19 0.00042 33.4 2.9 40 134-176 8-47 (153)
56 PF07750 GcrA: GcrA cell cycle 44.1 22 0.00049 34.1 3.2 38 192-236 2-39 (162)
57 KOG1194 Predicted DNA-binding 41.8 36 0.00078 38.1 4.6 44 190-239 187-230 (534)
58 smart00595 MADF subfamily of S 41.3 11 0.00023 31.4 0.5 25 151-178 29-53 (89)
59 PF09111 SLIDE: SLIDE; InterP 41.1 19 0.00041 33.0 2.1 52 165-224 28-82 (118)
60 KOG0384 Chromodomain-helicase 40.5 13 0.00028 45.7 1.2 65 128-207 1132-1196(1373)
61 COG5118 BDP1 Transcription ini 39.7 17 0.00037 39.7 1.8 49 190-244 365-413 (507)
62 PRK11169 leucine-responsive tr 35.9 28 0.0006 32.8 2.4 41 133-176 12-52 (164)
63 PF10545 MADF_DNA_bdg: Alcohol 35.7 14 0.00031 29.6 0.4 27 151-178 28-54 (85)
64 KOG2009 Transcription initiati 33.8 49 0.0011 38.0 4.3 52 121-175 401-452 (584)
65 PRK13923 putative spore coat p 26.4 8.6 0.00019 37.6 -2.7 53 190-244 5-59 (170)
66 KOG1194 Predicted DNA-binding 26.3 71 0.0015 35.9 3.8 49 125-176 183-231 (534)
67 PF04504 DUF573: Protein of un 24.2 87 0.0019 27.7 3.4 79 129-207 4-94 (98)
68 PRK09413 IS2 repressor TnpA; R 20.4 3.5E+02 0.0076 24.2 6.5 43 128-175 9-51 (121)
69 KOG2656 DNA methyltransferase 20.3 14 0.0003 40.5 -2.9 48 190-243 130-183 (445)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.96 E-value=6.8e-31 Score=257.92 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCccccccccccc-ccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHHHH
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAM 205 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~p-gRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lleav 205 (528)
+.||+||+|||++|+++|++||.++|..|++. ++ +|++++||.||.| ||+|+|+ ++.||.|||++|++++
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~--~gl~R~GKSCRlRW~N--yLrP~ik-----rg~fT~eEe~~Ii~lH 77 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKL--AGLRRCGKSCRLRWTN--YLRPDLK-----RGNFSDEEEDLIIKLH 77 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhh--cCCCccchHHHHHhhc--ccCCCcc-----CCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999998 55 9999999999999 9999999 9999999999999999
Q ss_pred HhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCCCc
Q 009693 206 SLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 246 (528)
Q Consensus 206 ~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~~s 246 (528)
.+ +|++ |+.||++|||||||. |||+|+++++++..
T Consensus 78 ~~---~GNr--Ws~IA~~LPGRTDNe-IKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 78 AL---LGNR--WSLIAGRLPGRTDNE-VKNHWNTHLKKKLL 112 (238)
T ss_pred HH---HCcH--HHHHHhhCCCcCHHH-HHHHHHHHHHHHHH
Confidence 99 9999 999999999999999 99999999988754
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.96 E-value=6.3e-30 Score=252.19 Aligned_cols=121 Identities=24% Similarity=0.323 Sum_probs=109.9
Q ss_pred cCCCCCCCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcC
Q 009693 101 QKVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKH 180 (528)
Q Consensus 101 skQ~l~~~S~d~~d~ng~~s~sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~Ld 180 (528)
.+.++++-.+.+|++.+. +|++||+|||++|+.+|++||..+|..||+. +.++||++|||+||.+ +|+
T Consensus 6 ~~~~~~~~~~pcc~K~gl---------KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~-~g~gRT~KQCReRW~N--~L~ 73 (249)
T PLN03212 6 GKKPVSKKTTPCCTKMGM---------KRGPWTVEEDEILVSFIKKEGEGRWRSLPKR-AGLLRCGKSCRLRWMN--YLR 73 (249)
T ss_pred CCCCCCCCCCCCcccCCC---------cCCCCCHHHHHHHHHHHHHhCcccHHHHHHh-hhcCCCcchHHHHHHH--hhc
Confidence 344555555777776666 8999999999999999999999999999997 2469999999999999 999
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 181 GNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 181 P~Ik~~~~kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
|.|+ +++||.|||++|++++.. ||++ |+.||.+|||||+++ |||||+.++++.
T Consensus 74 P~I~-----kgpWT~EED~lLlel~~~---~GnK--Ws~IAk~LpGRTDnq-IKNRWns~LrK~ 126 (249)
T PLN03212 74 PSVK-----RGGITSDEEDLILRLHRL---LGNR--WSLIAGRIPGRTDNE-IKNYWNTHLRKK 126 (249)
T ss_pred hhcc-----cCCCChHHHHHHHHHHHh---cccc--HHHHHhhcCCCCHHH-HHHHHHHHHhHH
Confidence 9999 999999999999999999 9999 999999999999999 999999998886
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.94 E-value=4.9e-28 Score=253.72 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=102.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHH
Q 009693 123 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 202 (528)
Q Consensus 123 l~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Ll 202 (528)
++.+++|++||+|||++|+++|++||.++|..||+. +.++|+++|||+||.+ +|+|.|+ +++||.|||++|+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~-~g~gRT~KQCRERW~N--yLdP~Ik-----KgpWT~EED~lLL 79 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ-AGLQRCGKSCRLRWIN--YLRPDLK-----RGTFSQQEENLII 79 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh-hccCcCcchHhHHHHh--ccCCccc-----CCCCCHHHHHHHH
Confidence 466779999999999999999999999999999987 2469999999999999 9999999 9999999999999
Q ss_pred HHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 203 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 203 eav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
+++.+ ||++ |++||.+|||||+++ |||||+.++++.
T Consensus 80 eL~k~---~GnK--WskIAk~LPGRTDnq-IKNRWnslLKKk 115 (459)
T PLN03091 80 ELHAV---LGNR--WSQIAAQLPGRTDNE-IKNLWNSCLKKK 115 (459)
T ss_pred HHHHH---hCcc--hHHHHHhcCCCCHHH-HHHHHHHHHHHH
Confidence 99999 9999 999999999999999 999999988875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.56 E-value=4e-15 Score=116.60 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHH
Q 009693 132 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 201 (528)
Q Consensus 132 WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~L 201 (528)
||+|||++|+.+|.+|| .+|..||.. |+.||..||+.||.+ +|.+.++ +++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~--l~~Rt~~~~~~r~~~--~l~~~~~-----~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEH--LGNRTPKQCRNRWRN--HLRPKIS-----RGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHH--STTS-HHHHHHHHHH--TTSTTST-----SSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHH--HCcCCHHHHHHHHHH--HCccccc-----CCCcCHHHHhcC
Confidence 99999999999999999 799999997 667999999999999 8899999 999999999886
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.52 E-value=6.5e-15 Score=160.16 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHH
Q 009693 121 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLA 200 (528)
Q Consensus 121 ~sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~ 200 (528)
..|.|..++++||++||.+|+.+|.+||...|.+|-.. +|||+..|||+||.+ +|+...| .+.|+-.||+.
T Consensus 352 ~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~--vPnRSdsQcR~RY~n--vL~~s~K-----~~rW~l~edeq 422 (939)
T KOG0049|consen 352 HTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA--VPNRSDSQCRERYTN--VLNRSAK-----VERWTLVEDEQ 422 (939)
T ss_pred eccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHh--cCCccHHHHHHHHHH--HHHHhhc-----cCceeecchHH
Confidence 35789999999999999999999999999999999997 899999999999999 9999999 99999999999
Q ss_pred HHHHHHhhcCCCCCCchHHHhhhCCCCCCCC---------CccccCCCCcCCC
Q 009693 201 ARHAMSLALDMPVKNITASCTNTTAGTTSSA---------TMNNPVPSTANAE 244 (528)
Q Consensus 201 Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq---------~IKNrW~s~l~k~ 244 (528)
|+.+|.. ||.. .|.+||.+||.||..| .+|-||......+
T Consensus 423 L~~~V~~---YG~g-~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~~~~~~ 471 (939)
T KOG0049|consen 423 LLYAVKV---YGKG-NWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAAGFCNA 471 (939)
T ss_pred HHHHHHH---Hccc-hHHHHHHHccccchhHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999 9987 8999999999999966 3445665544443
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.42 E-value=3.6e-14 Score=154.47 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=95.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCC---CcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHH
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 203 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~---nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lle 203 (528)
++.+.||+|||.+|+++|++...+ +|++|-.+ |+||+..|.-.||.. .|+|.|+ +|+||.+||.+|+.
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Y--mpgr~~~qLI~R~~~--~LdPsik-----hg~wt~~ED~~L~~ 373 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQY--MPGRTRQQLITRFSH--TLDPSVK-----HGRWTDQEDVLLVC 373 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHh--cCCcchhhhhhhhee--ccCcccc-----CCCCCCHHHHHHHH
Confidence 456789999999999999988755 49999996 999999999999999 9999999 99999999999999
Q ss_pred HHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCC
Q 009693 204 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 243 (528)
Q Consensus 204 av~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k 243 (528)
+|.+ ||.+ .|.+|...+|||++.| |+.||.+.|+.
T Consensus 374 AV~~---Yg~k-dw~k~R~~vPnRSdsQ-cR~RY~nvL~~ 408 (939)
T KOG0049|consen 374 AVSR---YGAK-DWAKVRQAVPNRSDSQ-CRERYTNVLNR 408 (939)
T ss_pred HHHH---hCcc-chhhHHHhcCCccHHH-HHHHHHHHHHH
Confidence 9999 9887 7999999999999999 99999887654
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.34 E-value=3.1e-13 Score=146.09 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHH
Q 009693 124 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 203 (528)
Q Consensus 124 ~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lle 203 (528)
.-+++.+.|+..||+.|..+|++||..+|..||.. +..|+++||+.||.+ +++|.++ +..|+.|||..|++
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~--~~~~~~kq~~~rw~~--~lnp~lk-----~~~~~~eed~~li~ 85 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL--LISSTGKQSSNRWNN--HLNPQLK-----KKNWSEEEDEQLID 85 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHH--hcccccccccchhhh--hhchhcc-----cccccHHHHHHHHH
Confidence 45568889999999999999999999999999998 556999999999999 9999999 99999999999999
Q ss_pred HHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCCC
Q 009693 204 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 245 (528)
Q Consensus 204 av~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~~ 245 (528)
+..+ +|.+ |+.|+..++|||..+ |.+||..++....
T Consensus 86 l~~~---~~~~--wstia~~~d~rt~~~-~~ery~~~~~~~~ 121 (512)
T COG5147 86 LDKE---LGTQ--WSTIADYKDRRTAQQ-CVERYVNTLEDLS 121 (512)
T ss_pred HHHh---cCch--hhhhccccCccchHH-HHHHHHHHhhhhh
Confidence 9999 9999 999999999999999 9999997766553
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.31 E-value=8.3e-13 Score=100.05 Aligned_cols=45 Identities=44% Similarity=0.721 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCccccccccccc-ccchhhhhHHHHh
Q 009693 129 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI 175 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~p-gRT~kQCR~RW~n 175 (528)
|++||+|||++|+++|.+||.++|..||.. ++ +||..||+.||.+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR--MPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH--HSSSSTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH--cCCCCCHHHHHHHHHh
Confidence 579999999999999999997779999998 67 9999999999998
No 9
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.8e-12 Score=138.77 Aligned_cols=102 Identities=23% Similarity=0.228 Sum_probs=93.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHHHHH
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 206 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lleav~ 206 (528)
.+.+-|+--||+.|..+|.+||.+.|.+|+.. +...+++||+.||.. +++|.|+ +..|+.|||++|+++..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sl--l~~kt~rqC~~rw~e--~ldp~i~-----~tews~eederlLhlak 75 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASL--LNRKTARQCKARWEE--WLDPAIK-----KTEWSREEDERLLHLAK 75 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHH--HhhcchhHHHHHHHH--HhCHHHh-----hhhhhhhHHHHHHHHHH
Confidence 36679999999999999999999999999997 789999999999998 9999999 99999999999999999
Q ss_pred hhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 207 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 207 ~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
+ ++.. |..|+.. -|||+++ |-.||+..+-..
T Consensus 76 l---~p~q--wrtIa~i-~gr~~~q-c~eRy~~ll~~~ 106 (617)
T KOG0050|consen 76 L---EPTQ--WRTIADI-MGRTSQQ-CLERYNNLLDVY 106 (617)
T ss_pred h---cCCc--cchHHHH-hhhhHHH-HHHHHHHHHHHH
Confidence 9 9999 9999985 5999999 888877655443
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.10 E-value=5.7e-11 Score=130.23 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHh
Q 009693 128 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 207 (528)
Q Consensus 128 Kkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lleav~~ 207 (528)
++|.||+||++.|..+|.++| +.|..|++. -||.+..||+||++|.+..-..+ ++.||.||++.|+++|+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~---lgr~P~~crd~wr~~~~~g~~~~-----r~~Ws~eEe~~Llk~V~~ 453 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKA---LGRMPMDCRDRWRQYVKCGSKRN-----RGAWSIEEEEKLLKTVNE 453 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHH---HccCcHHHHHHHHHhhccccccc-----cCcchHHHHHHHHHHHHH
Confidence 789999999999999999999 999999995 59999999999999655554567 999999999999999962
Q ss_pred hcC----C------------C-----CCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 208 ALD----M------------P-----VKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 208 al~----~------------G-----~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
.+. + + ...+|..|+..+.-|+-.+ |+-+|+.++...
T Consensus 454 ~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q-Cr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 454 MIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ-CRYKWYKLTTSP 510 (607)
T ss_pred HHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch-HHHHHHHHHhhH
Confidence 111 1 1 2236999999888888888 999999988876
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.00 E-value=3.6e-10 Score=82.23 Aligned_cols=45 Identities=44% Similarity=0.710 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 129 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
++.||++||++|+.++.+||..+|..|+.. +++||+.+|+.||.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~--~~~rt~~~~~~~~~~ 45 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE--LPGRTAEQCRERWNN 45 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 468999999999999999999999999997 789999999999998
No 12
>PLN03091 hypothetical protein; Provisional
Probab=98.92 E-value=9e-10 Score=117.19 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 122 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 122 sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
+|.+..++++||+|||++|++++.+|| .+|.+||+. ++|||+.|||+||+.+
T Consensus 60 yLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~--LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 60 YLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSC 111 (459)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHh--cCCCCHHHHHHHHHHH
Confidence 478889999999999999999999999 799999996 8999999999999963
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.91 E-value=4e-10 Score=112.45 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 122 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 122 sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
+|.|..++++||+|||++|++++.+|| .+|..||+. |+|||..||++||..
T Consensus 71 ~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~--LpGRTDnqIKNRWns 121 (249)
T PLN03212 71 YLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGR--IPGRTDNEIKNYWNT 121 (249)
T ss_pred hhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhh--cCCCCHHHHHHHHHH
Confidence 478899999999999999999999999 889999996 899999999999997
No 14
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.90 E-value=1.1e-09 Score=78.65 Aligned_cols=43 Identities=44% Similarity=0.767 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 131 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 131 ~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
+||+|||++|+.++.+||.++|..|+.. +++|+..||++||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~--~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE--LPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH--cCCCCHHHHHHHHHH
Confidence 5999999999999999999999999997 789999999999987
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.67 E-value=2.3e-09 Score=81.21 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCC-CCCCCCCccccCCCCc
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-GTTSSATMNNPVPSTA 241 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~Lp-GRTdnq~IKNrW~s~l 241 (528)
+++||.|||++|++++.+ ||.+ +|..|+..|+ |||..+ |++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~---~g~~-~W~~Ia~~~~~~Rt~~q-c~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKK---YGKD-NWKKIAKRMPGGRTAKQ-CRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHH---STTT-HHHHHHHHHSSSSTHHH-HHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH---hCCc-HHHHHHHHcCCCCCHHH-HHHHHHhhC
Confidence 478999999999999999 9987 8999999999 999999 999998653
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.53 E-value=2.6e-08 Score=72.37 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhhCCCCCCCCCccccCCCCcC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTAN 242 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~ 242 (528)
+++||.+||.+|+.++.. +| .+ |..|+..|++||..+ |++||+..++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~---~g~~~--w~~Ia~~~~~rt~~~-~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKK---YGKNN--WEKIAKELPGRTAEQ-CRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCHHH-HHHHHHHHcC
Confidence 368999999999999999 99 78 999999999999999 9999987664
No 17
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.53 E-value=5.9e-08 Score=96.12 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 121 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 121 ~sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
.+|+|..||+.||+|||++|++++..+| .+|..||++ +||||+..+++.|+-
T Consensus 54 NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~--LPGRTDNeIKN~Wnt 105 (238)
T KOG0048|consen 54 NYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGR--LPGRTDNEVKNHWNT 105 (238)
T ss_pred cccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhh--CCCcCHHHHHHHHHH
Confidence 3589999999999999999999999999 889999997 999999999999985
No 18
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.44 E-value=3.9e-08 Score=77.08 Aligned_cols=47 Identities=6% Similarity=-0.095 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCCC
Q 009693 193 QLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 245 (528)
Q Consensus 193 WT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~~ 245 (528)
||.|||++|++++.. ||.+ |..||.+|+.||..+ |++||+..|++..
T Consensus 1 WT~eEd~~L~~~~~~---~g~~--W~~Ia~~l~~Rt~~~-~~~r~~~~l~~~~ 47 (60)
T PF13921_consen 1 WTKEEDELLLELVKK---YGND--WKKIAEHLGNRTPKQ-CRNRWRNHLRPKI 47 (60)
T ss_dssp S-HHHHHHHHHHHHH---HTS---HHHHHHHSTTS-HHH-HHHHHHHTTSTTS
T ss_pred CCHHHHHHHHHHHHH---HCcC--HHHHHHHHCcCCHHH-HHHHHHHHCcccc
Confidence 999999999999999 9988 999999996699999 9999999887653
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.31 E-value=1.8e-07 Score=67.07 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhhCCCCCCCCCccccCCCC
Q 009693 192 SQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPST 240 (528)
Q Consensus 192 pWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdnq~IKNrW~s~ 240 (528)
+||.+||..|+.++.. +| .+ |..|+..+++||..+ |++||+..
T Consensus 1 ~Wt~eE~~~l~~~~~~---~g~~~--w~~Ia~~~~~rs~~~-~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKK---YGKNN--WEKIAKELPGRTPKQ-CRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHH---HCcCC--HHHHHhHcCCCCHHH-HHHHHHHh
Confidence 5999999999999999 99 77 999999999999999 99999764
No 20
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.14 E-value=6.4e-07 Score=97.83 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHH
Q 009693 124 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 203 (528)
Q Consensus 124 ~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lle 203 (528)
.+=..++.||.|||..|...+.++| +.|..|.+. .+|-+..||+||+++..+.-.++ +++|+.||+.+|..
T Consensus 286 ~~f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~---~~rmp~~crd~wr~~~~~g~t~~-----~~~ws~eee~~l~~ 356 (512)
T COG5147 286 NIFEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKL---LGRMPNDCRDRWRDYVKCGDTLK-----RNRWSIEEEELLDK 356 (512)
T ss_pred hHHhhhccCcccccccccccccccc-chhhHhhhh---hccCcHHHHHHHhhhccccCccC-----CCCCchhhhhhHHH
Confidence 3445688999999999999999999 999999995 49999999999999666665788 89999999988877
Q ss_pred HHHhhc--CC-CCCCchHHHhhhCCCCCCCCCccccCCCCcC
Q 009693 204 AMSLAL--DM-PVKNITASCTNTTAGTTSSATMNNPVPSTAN 242 (528)
Q Consensus 204 av~~al--~~-G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~ 242 (528)
.+.... .. -....|..|+.+++.|.-.. ++-++..+..
T Consensus 357 vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~~~~~ 397 (512)
T COG5147 357 VVNEMRLEAQQSSRILWLLIAQNIRNRLQHH-CRDKYGVLIS 397 (512)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhccccCC-CCCccccccc
Confidence 776311 01 11125999999999888777 5555444443
No 21
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.85 E-value=2.2e-05 Score=62.89 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCc---cccccccccccc-chhhhhHHHHhh
Q 009693 128 KRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDR-TASQLSQRWNIL 176 (528)
Q Consensus 128 Kkg~WT~EEDe~Li~lV~k~G~~nW---~kIAk~~F~pgR-T~kQCR~RW~nl 176 (528)
++..||+||..+++.+++.+|.|+| +.|+..+ ...| |..||+.+.+.|
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998899 9999873 3455 999999999984
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.35 E-value=0.00013 Score=78.22 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 126 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 126 kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
..-...||.+|+-+|+++++.||.|||..||.+ +..|+..+|+++|.++
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~h--IGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADH--IGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHH--HcccchHHHHHHHHHH
Confidence 345668999999999999999999999999998 7899999999999984
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.02 E-value=0.00024 Score=59.16 Aligned_cols=56 Identities=30% Similarity=0.542 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHH------cCC-C------Ccccccccc--cccccchhhhhHHHHhhhhcCCCcc
Q 009693 129 RKPWTAEEDLELISAVQK------CGE-G------NWANILRGD--FKWDRTASQLSQRWNILRKKHGNVI 184 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k------~G~-~------nW~kIAk~~--F~pgRT~kQCR~RW~nlr~LdP~Ik 184 (528)
|..||.+|...|++++.. ++. + -|..||..+ ....||+.||+.||.+|+..+..++
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999887 211 1 299999871 1348999999999999877666666
No 24
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.73 E-value=0.0012 Score=73.64 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CCcccccccccccccch-hhhhHHHHhhhhcCCC-------------cccCCCCCC
Q 009693 127 KKRKPWTAEEDLELISAVQKCGE-GNWANILRGDFKWDRTA-SQLSQRWNILRKKHGN-------------VILGSNSSG 191 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~-~nW~kIAk~~F~pgRT~-kQCR~RW~nlr~LdP~-------------Ik~~~~kkg 191 (528)
.+-+.|+.|||..|-..|..|-. ..|...-..+++-.-.. .+.+.=|++|..+-|- .++-...+|
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg 385 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRG 385 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccC
Confidence 34578999999999999987621 22433322211111110 2333333333222221 000012589
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 192 SQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 192 pWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
.||+||++.|..+|.+ +|+. |..|+..| ||.... |+.||.......
T Consensus 386 ~wt~ee~eeL~~l~~~---~g~~--W~~Ig~~l-gr~P~~-crd~wr~~~~~g 431 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVE---HGND--WKEIGKAL-GRMPMD-CRDRWRQYVKCG 431 (607)
T ss_pred CCCcchHHHHHHHHHH---hccc--HHHHHHHH-ccCcHH-HHHHHHHhhccc
Confidence 9999999999999999 9999 99999966 899999 999999876654
No 25
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.46 E-value=0.0016 Score=70.70 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 128 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 128 Kkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
....||.+|-.+|+++|+.|| .+|.+||++ +..||.-||-.||.+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~H--VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARH--VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHH--hCCCCHHHHHHHHHcC
Confidence 456899999999999999999 899999999 8899999999999985
No 26
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.13 E-value=0.0048 Score=50.79 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHc---C---CCC--ccccccccccc-ccchhhhhHHHHhhhhcCCCcc
Q 009693 129 RKPWTAEEDLELISAVQKC---G---EGN--WANILRGDFKW-DRTASQLSQRWNILRKKHGNVI 184 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~---G---~~n--W~kIAk~~F~p-gRT~kQCR~RW~nlr~LdP~Ik 184 (528)
|.++|.|||+.|++.|.++ | .|| |.++++. .+ .+|-.+-|+||.. +|.+...
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~--~~t~HtwQSwR~Ry~K--~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK--HPTRHTWQSWRDRYLK--HLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS---SSS--SHHHHHHHHH--HT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH--cCCCCCHHHHHHHHHH--HHhcccc
Confidence 5689999999999999654 2 234 9999998 45 9999999999987 7766543
No 27
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.12 E-value=0.004 Score=68.69 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcc
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 184 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik 184 (528)
.-++.||.+|+-+|+++|+.|| .+|.+|+.+ ...||..||-.++.+|=..++.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~h--Vg~ks~eqCI~kFL~LPieD~~l~ 305 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADH--VGTKSQEQCILKFLRLPIEDPYLA 305 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhc--cCCCCHHHHHHHHHhcCccchhhh
Confidence 4577999999999999999999 999999999 889999999999998655555554
No 28
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=95.98 E-value=0.0072 Score=59.61 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCccccccc-ccccccchhhhhHHHHhh--------------hhcCCCcccCCCCCCCCCH
Q 009693 131 PWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNIL--------------RKKHGNVILGSNSSGSQLS 195 (528)
Q Consensus 131 ~WT~EEDe~Li~lV~k~G~~nW~kIAk~-~F~pgRT~kQCR~RW~nl--------------r~LdP~Ik~~~~kkgpWT~ 195 (528)
+|++++|-+|+.+|..-. +-..|++. -|--..|-..+.+||..| +.|.|.+......+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998654 55556555 344567889999999854 4556665555567899999
Q ss_pred HHHHHHHHHHHhhcCCCCC-CchHHH-----hhhCCCCCCCCCccccCCCCcCCCCcc
Q 009693 196 EAQLAARHAMSLALDMPVK-NITASC-----TNTTAGTTSSATMNNPVPSTANAEASS 247 (528)
Q Consensus 196 EED~~Lleav~~al~~G~k-k~Ws~I-----A~~LpGRTdnq~IKNrW~s~l~k~~s~ 247 (528)
+|+++|...... .... ..+.+| +-+.++||... +.++|..+.+-...+
T Consensus 79 ~EE~lL~~v~s~---~~p~le~Fq~LL~~n~~vFh~sRTak~-L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 79 EEEQLLGTVASS---SQPSLETFQELLDKNRSVFHPSRTAKS-LQDHWRLMKQYHLLP 132 (199)
T ss_pred HHHHHHHhhhhc---cCCcHHHHHHHHHhChhhhccccCHHH-HHHHHHHHHHhchhh
Confidence 999999775433 2111 124443 23558999999 999999755555443
No 29
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.57 E-value=0.017 Score=47.50 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHc-----C-----------CCCccccccc---ccccccchhhhhHHHHhhhh
Q 009693 129 RKPWTAEEDLELISAVQKC-----G-----------EGNWANILRG---DFKWDRTASQLSQRWNILRK 178 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~-----G-----------~~nW~kIAk~---~F~pgRT~kQCR~RW~nlr~ 178 (528)
+..||++|.+.|+++|.+| | ..-|..|+.. .+...|+..||+.+|.+|+.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999987 2 1129999987 22348999999999998643
No 30
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.0055 Score=67.39 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 122 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 122 sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
++.+..++--|+.|||++|+.+...+. ..|..|+.. -||++.||-+||.++
T Consensus 52 ~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i---~gr~~~qc~eRy~~l 102 (617)
T KOG0050|consen 52 WLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADI---MGRTSQQCLERYNNL 102 (617)
T ss_pred HhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHH---hhhhHHHHHHHHHHH
Confidence 467888999999999999999999988 889999994 599999999999875
No 31
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.31 E-value=0.026 Score=59.34 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 130 KPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 130 g~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
--|+..|+-+|+++.+..|.|||..||.+ ++.|+...|+++|..+
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIady--iGsr~kee~k~HylK~ 108 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADY--IGSRAKEEIKSHYLKM 108 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHH--HhhhhhHHHHHHHHHH
Confidence 36999999999999999999999999997 7899999999999874
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.21 E-value=0.023 Score=54.42 Aligned_cols=46 Identities=37% Similarity=0.627 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCC-----cccccccccccccchhhhhHHHHh
Q 009693 127 KKRKPWTAEEDLELISAVQKCG-EGN-----WANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G-~~n-----W~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
.+...||.|||.+|-..|-+|= .|. ..++++. .+||+-.|.-||+.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~---L~RTsAACGFRWNs 53 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA---LNRTAAACGFRWNA 53 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---HcccHHHhcchHHH
Confidence 3567899999999999998772 122 6777775 49999999999996
No 33
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.60 E-value=0.041 Score=59.64 Aligned_cols=49 Identities=6% Similarity=-0.083 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 243 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k 243 (528)
...||.+|+.+|++++.. ||-. ||..||.++.-||..+ ||.||..+.-.
T Consensus 72 ~~~WtadEEilLLea~~t---~G~G-NW~dIA~hIGtKtkee-ck~hy~k~fv~ 120 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAET---YGFG-NWQDIADHIGTKTKEE-CKEHYLKHFVN 120 (438)
T ss_pred CCCCChHHHHHHHHHHHH---hCCC-cHHHHHHHHcccchHH-HHHHHHHHHhc
Confidence 578999999999999999 9888 8999999999888888 99998875443
No 34
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.45 E-value=0.087 Score=48.09 Aligned_cols=51 Identities=37% Similarity=0.538 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC---CCccccccc----------ccccccchhhhhHHHHhh
Q 009693 126 RKKRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 126 kkKkg~WT~EEDe~Li~lV~k~G~---~nW~kIAk~----------~F~pgRT~kQCR~RW~nl 176 (528)
..+++.||+|||.-|+-.+.+||. +.|..|-.. .|+..||+..+..|-..|
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 456779999999999999999999 889888543 235689999998887753
No 35
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=91.84 E-value=0.087 Score=42.33 Aligned_cols=44 Identities=5% Similarity=-0.118 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCch---HHHhhhCC-CC-CCCCCccccCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPV-KNIT---ASCTNTTA-GT-TSSATMNNPVPS 239 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~-kk~W---s~IA~~Lp-GR-Tdnq~IKNrW~s 239 (528)
+-.||+||....++++.. +|. . | ..|+..|. .| |..+ |+.|.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~---~G~g~--~a~pk~I~~~~~~~~lT~~q-V~SH~QK 52 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK---LGGPD--WATPKRILELMVVDGLTRDQ-VASHLQK 52 (57)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCc--ccchHHHHHHcCCCCCCHHH-HHHHHHH
Confidence 568999999999999999 998 6 9 99999884 23 7777 8776543
No 36
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.49 E-value=0.088 Score=54.84 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHc----CCCC-----ccccccc--ccccccchhhhhHHHHhhhhcCCCcc
Q 009693 129 RKPWTAEEDLELISAVQKC----GEGN-----WANILRG--DFKWDRTASQLSQRWNILRKKHGNVI 184 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~----G~~n-----W~kIAk~--~F~pgRT~kQCR~RW~nlr~LdP~Ik 184 (528)
...|+.+|-..|+.+..+. ..++ |..||+. ....-|++.||+.+|.+|.+++...+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k 120 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK 120 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999988632 3333 9999995 22558999999999999877776655
No 37
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.05 E-value=0.1 Score=50.57 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC------cccccccccccccchhhhhHHHHh
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEGN------WANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~n------W~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
.+...||.|||.+|-..|-+|+... ...++.. .+||+.+|..||+.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~---L~rt~aac~fRwNs 54 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA---LKRTAAACGFRWNS 54 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH---HhhhHHHHHhHHHH
Confidence 4677999999999988888886433 3333442 49999999999975
No 38
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=89.82 E-value=0.062 Score=44.29 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHhhc----CCCCCCchHHHhhhCC-CCCCCCCccccCCCCcCCCC
Q 009693 190 SGSQLSEAQLAARHAMSLAL----DMPVKNITASCTNTTA-GTTSSATMNNPVPSTANAEA 245 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al----~~G~kk~Ws~IA~~Lp-GRTdnq~IKNrW~s~l~k~~ 245 (528)
+.+||.|||.+|++.|...- ..+.++.|..++...+ .+|-.. .|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQS-wR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQS-WRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHH-HHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhccc
Confidence 56899999999999996521 1222337999999988 776666 9999988887764
No 39
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=89.27 E-value=0.41 Score=40.33 Aligned_cols=48 Identities=31% Similarity=0.597 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHc---CC----CC-----ccccccc---ccccccchhhhhHHHHhhhh
Q 009693 131 PWTAEEDLELISAVQKC---GE----GN-----WANILRG---DFKWDRTASQLSQRWNILRK 178 (528)
Q Consensus 131 ~WT~EEDe~Li~lV~k~---G~----~n-----W~kIAk~---~F~pgRT~kQCR~RW~nlr~ 178 (528)
.||+++|+.|++++... |. +. |..|+.. .|....+..||++||..|++
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988533 21 22 7788776 22346688999999998544
No 40
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=82.68 E-value=1.4 Score=47.80 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCC-cccCCCCCCCCCHHHH
Q 009693 120 GGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN-VILGSNSSGSQLSEAQ 198 (528)
Q Consensus 120 s~sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~-Ik~~~~kkgpWT~EED 198 (528)
++++.++.+.-+||.+|-++.+.+...+| .++..|+.. +|.|..+|++..|.+--+.+|- |+-+-..+.|+..+|-
T Consensus 356 s~t~g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~l--fP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY 432 (507)
T COG5118 356 SSTFGKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSL--FPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEY 432 (507)
T ss_pred cccccCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHh--cCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHH
Confidence 34566777888999999999999999999 899999997 8999999999999875566663 2212223467777765
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=81.59 E-value=1.5 Score=52.80 Aligned_cols=50 Identities=32% Similarity=0.475 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCccccccc----------ccccccchhhhhHHHHhh
Q 009693 127 KKRKPWTAEEDLELISAVQKCGEGNWANILRG----------DFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~----------~F~pgRT~kQCR~RW~nl 176 (528)
.+++.||+|||..|+-.+.+||.++|.+|-.. .|+..||+..+..|-..|
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 45667999999999999999999999998322 346799999999888763
No 42
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=80.10 E-value=1.6 Score=43.48 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC--CCCccccccc---ccccccchhhhhHHHHhhh
Q 009693 127 KKRKPWTAEEDLELISAVQKCG--EGNWANILRG---DFKWDRTASQLSQRWNILR 177 (528)
Q Consensus 127 kKkg~WT~EEDe~Li~lV~k~G--~~nW~kIAk~---~F~pgRT~kQCR~RW~nlr 177 (528)
..+-+||.+|+++|........ ...+.+|... .|-++||+++..++|+.|+
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk 126 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK 126 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence 3677999999999999776553 2347777655 4677999999999999763
No 43
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=78.42 E-value=2.1 Score=46.50 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCcccccccc----cccccchhhhhHHHHhh
Q 009693 129 RKPWTAEEDLELISAVQKCGEGNWANILRGD----FKWDRTASQLSQRWNIL 176 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~----F~pgRT~kQCR~RW~nl 176 (528)
-..||.||.+.|.+++++|. -+|--|+..+ |...||--.+++||...
T Consensus 130 dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred cccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 36799999999999999999 8999999883 56679999999999854
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.03 E-value=0.57 Score=45.14 Aligned_cols=53 Identities=8% Similarity=-0.030 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk--~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
.+.||.|||.+|-+.|-..+--|.-. .+-.++..| |||+-+ |.=|||+.++++
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAA-CGFRWNs~VRkq 58 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAA-CGFRWNAYVRKQ 58 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHH-hcchHHHHHHHH
Confidence 57899999999998888855444431 233444444 899999 999999999987
No 45
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=75.31 E-value=3 Score=46.69 Aligned_cols=50 Identities=4% Similarity=-0.069 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcC
Q 009693 187 SNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 242 (528)
Q Consensus 187 ~~kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~ 242 (528)
..-++.||.+|..+|++++.+ ||-. |.+|+.+...||--+ |--+|..+-.
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~---y~dd--W~kVa~hVg~ks~eq-CI~kFL~LPi 299 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEM---YGDD--WNKVADHVGTKSQEQ-CILKFLRLPI 299 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHH---hccc--HHHHHhccCCCCHHH-HHHHHHhcCc
Confidence 344689999999999999999 9999 999999999999888 6655554433
No 46
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=73.80 E-value=1.4 Score=46.92 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 240 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~ 240 (528)
...|+.+|+.+|++.... +|-. ||..||.++..|+... ||.||..+
T Consensus 63 ~e~WgadEEllli~~~~T---lGlG-NW~dIadyiGsr~kee-~k~HylK~ 108 (432)
T COG5114 63 EEGWGADEELLLIECLDT---LGLG-NWEDIADYIGSRAKEE-IKSHYLKM 108 (432)
T ss_pred CCCcCchHHHHHHHHHHh---cCCC-cHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 368999999999999998 7766 7999999999999999 99987653
No 47
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=70.42 E-value=5.5 Score=48.17 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhH-------HHHh----------------------------
Q 009693 131 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ-------RWNI---------------------------- 175 (528)
Q Consensus 131 ~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~-------RW~n---------------------------- 175 (528)
.|+.-+=..++.+..+||..+...||.. +.+.|...++. ||..
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~--~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASE--MEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHH--hcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777888888887778888886 66666666552 1100
Q ss_pred ----hhhcCCC----cccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhC------------CCCCCCCCccc
Q 009693 176 ----LRKKHGN----VILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT------------AGTTSSATMNN 235 (528)
Q Consensus 176 ----lr~LdP~----Ik~~~~kkgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~L------------pGRTdnq~IKN 235 (528)
-.+.+|- |+.+.+++..||.|||+.|+-.+.+ ||-. +|-.|...+ ..||... |+.
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~---~g~~-~~~~~~~~i~~~~~f~fd~~~~srt~~~-~~~ 978 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHK---LGYG-NWDELKAAFRTSPLFRFDWFVKSRTPQE-LAR 978 (1033)
T ss_pred HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHH---hccc-hHHHHHHHHHhCCceeeehhhccCCHHH-HHH
Confidence 0112221 3333344678999999999999999 8854 498885543 4677777 777
Q ss_pred cCCCCcC
Q 009693 236 PVPSTAN 242 (528)
Q Consensus 236 rW~s~l~ 242 (528)
|.+++++
T Consensus 979 r~~~l~~ 985 (1033)
T PLN03142 979 RCDTLIR 985 (1033)
T ss_pred HHHHHHH
Confidence 7665443
No 48
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=69.19 E-value=2.6 Score=46.76 Aligned_cols=44 Identities=5% Similarity=-0.102 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPS 239 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s 239 (528)
...||.+|..+|++.+++ ||.. |.+||.++..+|-.| |=-||..
T Consensus 279 dk~WS~qE~~LLLEGIe~---ygDd--W~kVA~HVgtKt~Eq-CIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEM---YGDD--WDKVARHVGTKTKEQ-CILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHH---hhhh--HHHHHHHhCCCCHHH-HHHHHHc
Confidence 459999999999999999 9999 999999999999887 6666554
No 49
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=68.36 E-value=0.55 Score=38.99 Aligned_cols=51 Identities=8% Similarity=-0.040 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhhc---CC----CCC-C-chHHHhhhC----CCCCCCCCccccCCCCcC
Q 009693 191 GSQLSEAQLAARHAMSLAL---DM----PVK-N-ITASCTNTT----AGTTSSATMNNPVPSTAN 242 (528)
Q Consensus 191 gpWT~EED~~Lleav~~al---~~----G~k-k-~Ws~IA~~L----pGRTdnq~IKNrW~s~l~ 242 (528)
..||.+|-..|++++..-+ .+ ..+ . .|..|+..| ..||..| |+++|.++.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~q-c~~Kw~~L~~ 65 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQ-CRNKWKNLKK 65 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 5799999999999988721 11 111 1 599999998 4689989 9999988544
No 50
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=62.59 E-value=6.8 Score=33.58 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=13.1
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHcC
Q 009693 125 PRKKRKPWTAEEDLEL--------ISAVQKCG 148 (528)
Q Consensus 125 ~kkKkg~WT~EEDe~L--------i~lV~k~G 148 (528)
|.-..|-||+|+|+.| .+++++||
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 4446789999999999 34555666
No 51
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=61.94 E-value=7.7 Score=45.29 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHH---hhhhcCCCcc
Q 009693 130 KPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWN---ILRKKHGNVI 184 (528)
Q Consensus 130 g~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~---nlr~LdP~Ik 184 (528)
..||+.|-.++.+++-.|. +++..|++. ++++|..||-+-|. .+++++-.+-
T Consensus 620 d~WTp~E~~lF~kA~y~~~-KDF~~v~km--~~~KtVaqCVeyYYtWKK~~~~~~~~~ 674 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYS-KDFIFVQKM--VKSKTVAQCVEYYYTWKKIMRLGRKII 674 (907)
T ss_pred ccccHHHHHHHHHHHHHhc-ccHHHHHHH--hccccHHHHHHHHHHHHHhccchhhhH
Confidence 4899999999999999999 899999997 89999999998754 5444443333
No 52
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=59.01 E-value=8.3 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 135 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 135 EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
+=|.+|+...++.|...|..||+. -|=+...|..|+..|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~---lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEE---LGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHH---HTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHH---HCcCHHHHHHHHHHh
Confidence 458999999999998889999996 488999999999874
No 53
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=48.04 E-value=6.4 Score=33.06 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCC--------chHHHhhhCCCCCCCC----CccccCCC
Q 009693 192 SQLSEAQLAARHAMSLALDMPVKN--------ITASCTNTTAGTTSSA----TMNNPVPS 239 (528)
Q Consensus 192 pWT~EED~~Lleav~~al~~G~kk--------~Ws~IA~~LpGRTdnq----~IKNrW~s 239 (528)
.||++.++.|++++...+.-|++. .|..|+..|-.++... +|+|||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 499999999999887754344441 4888998884444332 48888654
No 54
>PLN03162 golden-2 like transcription factor; Provisional
Probab=45.44 E-value=42 Score=36.80 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCC--cccccccccccccchhhhhHHHHhhhh
Q 009693 123 MPPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNILRK 178 (528)
Q Consensus 123 l~~kkKkg~WT~EEDe~Li~lV~k~G~~n--W~kIAk~~F~pgRT~kQCR~RW~nlr~ 178 (528)
...|+.|-.||+|=.++++++|.+.|..+ =+.|.+.|-+++=|..+++.+.+.||.
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl 288 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRS 288 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 34667788999999999999999999433 455666533567888888888777533
No 55
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=45.28 E-value=19 Score=33.36 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 134 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 134 ~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
.+-|.+|+.+.++.|.-.|.+||+. -|-+...|+.||..|
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~---lglS~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQ---FGVSPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 4679999999999998899999996 499999999999985
No 56
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=44.14 E-value=22 Score=34.10 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCcccc
Q 009693 192 SQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNP 236 (528)
Q Consensus 192 pWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNr 236 (528)
.||.|..+.|.++...|+. -++||..|.|.|-|+ |--+
T Consensus 2 ~Wtde~~~~L~~lw~~G~S------asqIA~~lg~vsRnA-ViGk 39 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGLS------ASQIARQLGGVSRNA-VIGK 39 (162)
T ss_pred CCCHHHHHHHHHHHHcCCC------HHHHHHHhCCcchhh-hhhh
Confidence 5999999999999988444 799999999899888 5443
No 57
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=41.83 E-value=36 Score=38.09 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPS 239 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s 239 (528)
...||.||--++-.+|.. ||.. +.+|-+.||.|+=.. |.-+|+.
T Consensus 187 ~d~WT~Ed~vlFe~aF~~---~GK~--F~kIrq~LP~rsLaS-lvqyYy~ 230 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQF---FGKD--FHKIRQALPHRSLAS-LVQYYYS 230 (534)
T ss_pred cccchHHHHHHHHHHHHH---hccc--HHHHHHHccCccHHH-HHHHHHH
Confidence 579999998888899999 9999 999999999999766 6555554
No 58
>smart00595 MADF subfamily of SANT domain.
Probab=41.35 E-value=11 Score=31.43 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=20.4
Q ss_pred CcccccccccccccchhhhhHHHHhhhh
Q 009693 151 NWANILRGDFKWDRTASQLSQRWNILRK 178 (528)
Q Consensus 151 nW~kIAk~~F~pgRT~kQCR~RW~nlr~ 178 (528)
-|..|+.. + +-+..+|+.||.+|+.
T Consensus 29 aW~~Ia~~--l-~~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEE--L-GLSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHH--H-CcCHHHHHHHHHHHHH
Confidence 39999997 4 4499999999998743
No 59
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=41.07 E-value=19 Score=33.04 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=32.1
Q ss_pred chhhhhHHHHhhhhcCC-CcccCCCCCCCCCHHHHHHHHHHHHhhcCCCC--CCchHHHhhhC
Q 009693 165 TASQLSQRWNILRKKHG-NVILGSNSSGSQLSEAQLAARHAMSLALDMPV--KNITASCTNTT 224 (528)
Q Consensus 165 T~kQCR~RW~nlr~LdP-~Ik~~~~kkgpWT~EED~~Lleav~~al~~G~--kk~Ws~IA~~L 224 (528)
--.+|++=|..|...+| +-+ +..||.+||..|+-.+.+ ||- -++|-.|...+
T Consensus 28 Kv~~~~~P~~~L~i~y~~~~~-----~k~yseeEDRfLl~~~~~---~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 28 KVEQYKNPWQELKINYPPNNK-----KKVYSEEEDRFLLCMLYK---YGYDAEGNWEKIKQEI 82 (118)
T ss_dssp HHCC-SSHHHH---SSTSTSS------SSS-HHHHHHHHHHHHH---HTTTSTTHHHHHHHHH
T ss_pred HHHHccCCHHHCeeccCCCCC-----CCCcCcHHHHHHHHHHHH---hCCCCCchHHHHHHHH
Confidence 33455566776655555 333 789999999999999888 666 22588887644
No 60
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=40.49 E-value=13 Score=45.70 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHh
Q 009693 128 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 207 (528)
Q Consensus 128 Kkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nlr~LdP~Ik~~~~kkgpWT~EED~~Lleav~~ 207 (528)
.---|..+||..|+-+|-+||.|+|..|-..- ..+=+.+ +.--.+ +. ...|-...-..|+.++..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp-~L~l~dK--------i~~~e~-~P-----~a~~L~~R~~yLls~~~~ 1196 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDP-DLGLTDK--------IFLVET-VP-----QAKHLQRRADYLLSLLRK 1196 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCc-cccchhh--------hccccc-CC-----chHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999998885430 0011111 000001 22 556777777777777777
No 61
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=39.72 E-value=17 Score=39.74 Aligned_cols=49 Identities=4% Similarity=-0.073 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
-.+|+.+|-++..+++.+ +|.. ++.|+..+|.|.-.| ||-.|..--+.+
T Consensus 365 ~~~Ws~~e~ekFYKALs~---wGtd--F~LIs~lfP~R~Rkq-IKaKfi~Eek~n 413 (507)
T COG5118 365 ALRWSKKEIEKFYKALSI---WGTD--FSLISSLFPNRERKQ-IKAKFIKEEKVN 413 (507)
T ss_pred CCcccHHHHHHHHHHHHH---hcch--HHHHHHhcCchhHHH-HHHHHHHHhhhC
Confidence 358999999999999999 9999 999999999999999 998876644443
No 62
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=35.87 E-value=28 Score=32.77 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 133 TAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 133 T~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
-.+-|.+|+.+.++.|.-.|.+||+. -|-+...|+.||+.|
T Consensus 12 lD~~D~~IL~~Lq~d~R~s~~eiA~~---lglS~~tv~~Ri~rL 52 (164)
T PRK11169 12 LDRIDRNILNELQKDGRISNVELSKR---VGLSPTPCLERVRRL 52 (164)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 36779999999999998899999996 488999999999985
No 63
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=35.68 E-value=14 Score=29.65 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=20.5
Q ss_pred CcccccccccccccchhhhhHHHHhhhh
Q 009693 151 NWANILRGDFKWDRTASQLSQRWNILRK 178 (528)
Q Consensus 151 nW~kIAk~~F~pgRT~kQCR~RW~nlr~ 178 (528)
-|..|+.. +...-+..+|+.||.+|+.
T Consensus 28 aw~~Ia~~-l~~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARE-LGKEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHH-HccchhHHHHHHHHHHHHH
Confidence 39999987 2334678899999998644
No 64
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=33.81 E-value=49 Score=37.98 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 121 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 121 ~sl~~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
.++.++....+|+.+|-++.......+| .+...|+.. ++.|..+|+|..+..
T Consensus 401 ~t~sk~~~~~~w~~se~e~fyka~~~~g-s~~slis~l--~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 401 ATYSKKLETDKWDASETELFYKALSERG-SDFSLISNL--FPLRDRKQIKAKFKK 452 (584)
T ss_pred hhccCccccCcccchhhHHhhhHHhhhc-ccccccccc--cccccHHHHHHHHhh
Confidence 4457777899999999999999999999 889999997 899999999999985
No 65
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.41 E-value=8.6 Score=37.55 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC-c-hHHHhhhCCCCCCCCCccccCCCCcCCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKN-I-TASCTNTTAGTTSSATMNNPVPSTANAE 244 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk-~-Ws~IA~~LpGRTdnq~IKNrW~s~l~k~ 244 (528)
.+.||.|+|.+|-+.|-..+.-|... . ...++. .-+||.-+ |.-|||+.++++
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~-~L~rt~aa-c~fRwNs~vrk~ 59 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD-ALKRTAAA-CGFRWNSVVRKQ 59 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHhhhHHH-HHhHHHHHHHHH
Confidence 68899999998876666622222221 1 222223 24799999 999999999876
No 66
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=26.33 E-value=71 Score=35.91 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHhh
Q 009693 125 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 176 (528)
Q Consensus 125 ~kkKkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~nl 176 (528)
..-....||.||=-++..+.+.|| .+..+|-+. ++.|+-..+++-|...
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~--LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQA--LPHRSLASLVQYYYSW 231 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHH--ccCccHHHHHHHHHHH
Confidence 334577899999999999999999 999999997 8999999999887653
No 67
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.23 E-value=87 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHc----CCC---Cccccccc---ccccccchhhhhHHHHhhhhcCCCcccC--CCCCCCCCHH
Q 009693 129 RKPWTAEEDLELISAVQKC----GEG---NWANILRG---DFKWDRTASQLSQRWNILRKKHGNVILG--SNSSGSQLSE 196 (528)
Q Consensus 129 kg~WT~EEDe~Li~lV~k~----G~~---nW~kIAk~---~F~pgRT~kQCR~RW~nlr~LdP~Ik~~--~~kkgpWT~E 196 (528)
.+.||+|++-.|++++-.| |.. +|..+... .+-..=+..|..+.-+.|++++-+.... ......++..
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k~~~g~~~~~~~~ 83 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKKSKNGKDPSFSKP 83 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhhcccCcCCCCCCH
Confidence 4579999999988887655 633 34333221 0011235566666555554443332210 0001267888
Q ss_pred HHHHHHHHHHh
Q 009693 197 AQLAARHAMSL 207 (528)
Q Consensus 197 ED~~Lleav~~ 207 (528)
-|+.+.++-++
T Consensus 84 hd~~~f~Lsk~ 94 (98)
T PF04504_consen 84 HDRRLFELSKK 94 (98)
T ss_pred hHHHHHHHHHH
Confidence 88888777665
No 68
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.39 E-value=3.5e+02 Score=24.22 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCcccccccccccccchhhhhHHHHh
Q 009693 128 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 175 (528)
Q Consensus 128 Kkg~WT~EEDe~Li~lV~k~G~~nW~kIAk~~F~pgRT~kQCR~RW~n 175 (528)
+++.||.|+=..++..+...| ..=..||+. |.- ..+--.+|.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e-~gI---s~~tl~~W~r 51 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQ-HGV---AASQLFLWRK 51 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHH-HCc---CHHHHHHHHH
Confidence 456899999877777776666 456688887 222 3445567876
No 69
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=20.30 E-value=14 Score=40.50 Aligned_cols=48 Identities=8% Similarity=-0.075 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhh-----CCC-CCCCCCccccCCCCcCC
Q 009693 190 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNT-----TAG-TTSSATMNNPVPSTANA 243 (528)
Q Consensus 190 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~-----LpG-RTdnq~IKNrW~s~l~k 243 (528)
...||.+|-+.|+++.+. |--+ |..|+.+ ++. ||-.. +|.|||.+.++
T Consensus 130 dn~WskeETD~LF~lck~---fDLR--f~VIaDRyd~qq~~~sRTvEd-LKeRyY~v~r~ 183 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKR---FDLR--FFVIADRYDNQQYKKSRTVED-LKERYYSVCRK 183 (445)
T ss_pred cccccHHHHHHHHHHHHh---cCee--EEEEeeccchhhccccccHHH-HHHHHHHHHHH
Confidence 467999999999999999 9999 9999987 555 88888 99999986654
Done!