BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009694
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 28/259 (10%)
Query: 84 FVAGATGKVGSRTVRELLKLG---FRVRAGVRSVQRAENLVQSVKQMKLDGELAN----- 135
V GA+G+ G + V + LK G F + VRS Q E + D A+
Sbjct: 8 LVTGASGRTG-QIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPA 66
Query: 136 -KGIQQMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLV 194
+GI ++ L + + +P G I G P ++D+ KN +
Sbjct: 67 FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQY---------PEQVDWIGQKNQI 117
Query: 195 DAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGG 254
DAA +A V H ++V S+G P L +L+WKRKAE+ L SG PYTI+R GG
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLG-NGNILVWKRKAEQYLADSGTPYTIIRAGG 176
Query: 255 MERPTDAYKE---THNITLSQED--TLFGGQVSNLQVAELLACMAKNRSLSYCKVVEVIA 309
+ +E + L Q D T+ V+ + + LL AKN++ E
Sbjct: 177 LLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPE--- 233
Query: 310 ETTAPLTPMEELLAKIPSQ 328
T+ P + L +++ S+
Sbjct: 234 GTSTPTKDFKALFSQVTSR 252
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 99/248 (39%), Gaps = 34/248 (13%)
Query: 80 DNLAF------VAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGEL 133
+NL F V GA GKV + EL G A VR+ ++ EL
Sbjct: 15 ENLYFQGXRVLVVGANGKVARYLLSELKNKGHEPVAXVRNEEQGP-------------EL 61
Query: 134 ANKGIQQMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNL 193
+G ++V +LE+ A + V+ G+ D T ID
Sbjct: 62 RERGAS---DIVVANLEE--DFSHAFASIDAVVFAAGSGPHTGADKT--ILIDLWGAIKT 114
Query: 194 VDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPG 253
+ A + FI VSS+GT P L+ KR A++ L S L YTIVRPG
Sbjct: 115 IQEAEKRGIKRFIXVSSVGTVD---PDQGPXNXRHYLVAKRLADDELKRSSLDYTIVRPG 171
Query: 254 GMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELLACMAKNRSLSYCKVVEVIAETTA 313
P + T +T+S + ++ VA+++A + ++ + K EV+ T
Sbjct: 172 ----PLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELV-DQQHTIGKTFEVLNGDTP 226
Query: 314 PLTPMEEL 321
+E+L
Sbjct: 227 IAKVVEQL 234
>pdb|3DQP|A Chain A, Crystal Structure Of The Oxidoreductase Ylbe From
Lactococcus Lactis, Northeast Structural Genomics
Consortium Target Kr121
Length = 219
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 42/182 (23%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQQMLE 143
F+ G+TG+VG ++ L +++ AG R V++ +VK + D
Sbjct: 4 FIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFD------------- 49
Query: 144 LVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVN 203
V+ E+ + L +I G+ K + ++D L AA A+V
Sbjct: 50 -VDWTPEEXAK---QLHGXDAIINVSGSGGKSLL------KVDLYGAVKLXQAAEKAEVK 99
Query: 204 HFIMVS---SLGTNKF---GFPA----AILNLFWGVLLWKRKAEEALIASGLPYTIVRPG 253
FI++S SL K+ GF A I F + L K + L YTI++PG
Sbjct: 100 RFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADLYLTKE--------TNLDYTIIQPG 151
Query: 254 GM 255
+
Sbjct: 152 AL 153
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQQMLE 143
F+ GA+G+ G ++E+L+ G + + V + R +++ D E A K + Q E
Sbjct: 22 FILGASGETGRVLLKEILEQG--LFSKVTLIGR--------RKLTFDEE-AYKNVNQ--E 68
Query: 144 LVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVN 203
+V D EK A V CC+G + + G R+D + A
Sbjct: 69 VV--DFEKLDDYASAFQGHDVGFCCLGTTRGKA-GAEGFVRVDRDYVLKSAELAKAGGCK 125
Query: 204 HFIMVSSLGTNK 215
HF ++SS G +K
Sbjct: 126 HFNLLSSKGADK 137
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 160 GNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNHFIMVSSLGTNKFGFP 219
G+ CC+G + KE +DF + A H+++VS+LG +
Sbjct: 64 GSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGAD----- 118
Query: 220 AAILNLFWGVLLWKRKAEEALIASGLP-YTIVRPGGMERPTDAYK 263
A ++F+ + K + E+AL G P TI RP + P + ++
Sbjct: 119 -AKSSIFYNRV--KGELEQALQEQGWPQLTIARPSLLFGPREEFR 160
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 85 VAGATGKVGSRTVRELLKLGFRVRAGVR---SVQRAENLV 121
V GA+G +GS V LL+ G+ VRA VR +V++ ++L+
Sbjct: 10 VTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLL 49
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 84 FVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSV-----KQMKLDGELANKGI 138
F+ GA+G+ G ++E+L +NL V +++ + E A K +
Sbjct: 28 FILGASGETGKVLLKEIL---------------GQNLFSKVTLIGRRKLTFEEE-AYKNV 71
Query: 139 QQMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAAT 198
Q E+V D EK A V CC+G + + G R+D + A
Sbjct: 72 NQ--EVV--DFEKLDVYASAFQGHDVGFCCLGTTRSKA-GAEGFVRVDRDYVLKSAELAK 126
Query: 199 IAKVNHFIMVSSLGTNK 215
HF ++SS G +K
Sbjct: 127 AGGCKHFNLLSSRGADK 143
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 56/240 (23%)
Query: 55 AQASGTINIC-----SEAVGATPTKADSKDDNLAFVAGATGKVGSRTVRELLKLGFRVRA 109
A+A I IC S+ VG AD + +A V K G R + K+ + RA
Sbjct: 31 AEAGADIAICDRCENSDVVGYPLATADDLAETVALVE----KTGRRCISA--KVDVKDRA 84
Query: 110 GVRS-VQRAENLVQSVKQMKLDGELANKGIQQMLELVECDLEKRVQIEPALGNASVVICC 168
+ S V AE+ + + D + N GI + L E + Q + +G
Sbjct: 85 ALESFVAEAEDTLGGI-----DIAITNAGISTIALLPEVE---SAQWDEVIGT------- 129
Query: 169 IGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNH--FIMVSSLGTNKFGFP-AAILNL 225
++TG + ++ K N+ + VSS+ + F A+ ++
Sbjct: 130 ---------NLTGTFNTIAAVAPGMI------KRNYGRIVTVSSMLGHSANFAQASYVSS 174
Query: 226 FWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQ 285
WGV+ + A L+ G+ V PG +E P THN D +FG +L+
Sbjct: 175 KWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPM-----THN------DFVFGTMRPDLE 223
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 69 GATPTKADSKDDNLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQ 126
G P + + +A + GA+ +G R L + G+ + G RSV R E + + Q
Sbjct: 13 GLVPRGSHMLEMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ 70
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 85 VAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQQMLEL 144
V GATG+ GS V E + G V A VR Q+A + +L +A +++ L L
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD--------RLGATVATL-VKEPLVL 55
Query: 145 VECDLE 150
E DL+
Sbjct: 56 TEADLD 61
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 234 RKAEEALIASGLPYTIVRPGGM 255
R+A +A+ ASGL YTI+RP +
Sbjct: 152 RRAADAIEASGLEYTILRPAWL 173
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 87 GATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELANKGIQQMLELVE 146
GA+G VGS + E L GF V A VR ++ +K++ E L++ +
Sbjct: 11 GASGFVGSALLNEALNRGFEVTAVVRHPEK----------IKIENE--------HLKVKK 52
Query: 147 CDLEKRVQIEPALGNASVVICCI--GASEKEVFDITGPYRIDFQATKNLVDAATIAKVNH 204
D+ ++ A VI G + +++D T + ++D A VN
Sbjct: 53 ADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDET------IKVYLTIIDGVKKAGVNR 106
Query: 205 FIMVSSLGT 213
F+ V G+
Sbjct: 107 FLXVGGAGS 115
>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
pdb|2RHR|A Chain A, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And
Inhibitor Emodin
Length = 277
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 77 SKDDNLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGELAN- 135
++D +A V GAT +G R L K G RV R E L ++K+++ G A+
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG---EEGLRTTLKELREAGVEADG 75
Query: 136 -----KGIQQMLELVECDLEKRVQIEPALGNASVVICCIGASEKEVFD----------IT 180
+ + ++ LV +E+ ++ + NA + G + E+ D +T
Sbjct: 76 RTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRL---GGGATAELADELWLDVVETNLT 132
Query: 181 GPYRIDFQATK--NLVDAATIAKVNHFIMVSSLGTNKFGFPAAILNLFWGVLLWKRKAEE 238
G +R+ Q K +++ T VN + S+ G A GV+ + +
Sbjct: 133 GVFRVTKQVLKAGGMLERGTGRIVN---IASTGGKQGVVHAAPYSASKHGVVGFTKALGL 189
Query: 239 ALIASGLPYTIVRPGGMERPTDAYKETH 266
L +G+ V PG +E P A H
Sbjct: 190 ELARTGITVNAVCPGFVETPMAASVREH 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,519,727
Number of Sequences: 62578
Number of extensions: 503069
Number of successful extensions: 993
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 28
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)