Your job contains 1 sequence.
>009695
MMHHSNPYGYSSKRRGPLNLPDDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHC
EGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERMWEVEAEVE
GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQI
TGATLAVKKALVAVTTCLQHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPL
TGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQ
NASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGE
NKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQI
SGEYKNVQNALSEVVGRLRHNLKSGEILNEARPRSPSGRVGGPALHKLHQSVALSPEFEQ
ETIAVQGVDQFVLPLNRSQTLQVKVCASCAFFLFIYCTLSSSRECFPK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009695
(528 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 629 1.6e-61 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 278 4.1e-24 3
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 265 5.4e-20 1
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 209 1.0e-13 1
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 197 4.6e-13 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 200 7.5e-13 1
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 160 2.2e-08 1
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 140 1.1e-05 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 117 1.8e-05 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 124 2.5e-05 1
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 99 7.8e-05 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 124 0.00016 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 109 0.00020 1
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 119 0.00026 1
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 119 0.00031 1
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 119 0.00034 1
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 117 0.00043 1
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 118 0.00044 1
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 117 0.00057 1
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 117 0.00057 1
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 117 0.00057 1
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 118 0.00070 1
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 118 0.00083 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 109 0.00092 1
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 114 0.00095 1
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 168/476 (35%), Positives = 239/476 (50%)
Query: 12 SKRRGPLNLPDDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFPGSDHRV 71
SKRR +++ D + R+VC V+ +T +IHCE GSDH V
Sbjct: 12 SKRRPVIHVLPDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWV 71
Query: 72 ILVVGSGSIDRRIMFCENDVVVEGGE--------VSSTQEAVIRVFERMWXXXXXXXXXX 123
+ +VGS ++++ I+ + GGE VS+ Q A+IRV ER W
Sbjct: 72 VFIVGSTAVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGG 131
Query: 124 XXXXX---XYCGLLAXXXXXXXXXXXXXXXXXXMRIESGAKIVMLPPPACAAIDDQLIQI 180
YCG+LA MR SGA I +LPPP C +D+LIQI
Sbjct: 132 VVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQI 191
Query: 181 TGXXXXXXXXXXXXXXCLQHLSTMEKSPICFN-RPIEKVFYS-NSSDPHREFFPHLSLVP 238
TG +Q+ + + P + + E + NS DPH EFFP+L
Sbjct: 192 TGDVLAVKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLR--- 248
Query: 239 PLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRS 298
+ NA+E +S+ D G + RK V +++F+ A GIIGK+G I+R+
Sbjct: 249 ---SSSLSNATEIVASNRHLPYD--GGNSTERK--VVFKIIFTSVVAGGIIGKQGTIIRA 301
Query: 299 LQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSS 358
LQN +GA IS APL SGERVVT+SA E L++R+S QNA LVFARSVE++ ++G
Sbjct: 302 LQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRP 361
Query: 359 GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418
G + G V +LV + F G+G+ E TG D+ + G QVL ++N+VVI
Sbjct: 362 GLHNGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQVLEWISENEVVI 418
Query: 419 QISGEYKNVQNALSEVVGRLRHNLKSGEILNEARPR--SPSGRVGGPA-LHKLHQS 471
+I GEY +VQ AL+ V +LR NL ++L E R R +P GG + ++ L S
Sbjct: 419 EIKGEYSHVQKALTHVSSKLRENLLPKKVLGEMRARVSNPYESAGGRSQIYNLQPS 474
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 278 (102.9 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 73/208 (35%), Positives = 108/208 (51%)
Query: 250 EFHSSSADADRDHP---------G-LDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSL 299
E+HS DHP G ++ ++EVA R+L +IGK GA+VR+L
Sbjct: 242 EYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRAL 301
Query: 300 QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSG 359
QN SGA I + P S ER++ ISA E L+ RHS Q+ + V R VE+ GF
Sbjct: 302 QNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEI----GFEPS 357
Query: 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQ 419
AV +LV + ++G L G G +SEM TG I++ +Q +Q+D ++Q
Sbjct: 358 A----AVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQ 413
Query: 420 ISGEYKNVQNALSEVVGRLRHNLKSGEI 447
+ G K VQ+AL +++ RLR + G +
Sbjct: 414 VIGNLKTVQDALFQILCRLREAMFPGRL 441
Score = 102 (41.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 29/110 (26%), Positives = 56/110 (50%)
Query: 334 SPVQNAAVLVFARSVEVEGQQGFSSGE-NKGDAVAVS-ILVGADFVGCLTGSGSSAVSEM 391
S Q A + VF R V + E +KG++ + ++V + V L G + ++
Sbjct: 114 SSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKI 173
Query: 392 EDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441
+ +G +++ +Q+ CA DVVIQ++G++ +V+ AL V L+ +
Sbjct: 174 REDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQES 223
Score = 74 (31.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 272 QEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPL-TKSGERVVTISA 325
+ V R+L IIGK G+++R LQ+ +G+ I + S ERVV I A
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIA 71
Score = 51 (23.0 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 26/109 (23%), Positives = 36/109 (33%)
Query: 99 SSTQEAVIRVFERMWXXXXXXXXXXXXX----XXXYCGLLAXXXXXXXXXXXXXXXXXXM 154
SS Q A++RVFER+ C ++ +
Sbjct: 114 SSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKI 173
Query: 155 RIESGAKIVMLPP----PACAAIDDQLIQITGXXXXXXXXXXXXXXCLQ 199
R +SGA IV + P CA D +IQ+ G CLQ
Sbjct: 174 REDSGA-IVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQ 221
Score = 50 (22.7 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 19/82 (23%), Positives = 30/82 (36%)
Query: 11 SSKRRGPLNLPDDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFP-GSDH 69
+SKR + V FRL+CP T +I P S+
Sbjct: 5 TSKRPATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEE 64
Query: 70 RVILVVG-SGSIDRRIMFCEND 90
RV+L++ SG C+++
Sbjct: 65 RVVLIIAPSGKKKDESNVCDSE 86
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 265 (98.3 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 117/506 (23%), Positives = 200/506 (39%)
Query: 10 YSSKRRGPLNLPDDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFPGSDH 69
Y S+ + N D VV +R++CP+ V+ +T+ RI FPG
Sbjct: 29 YESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSE 88
Query: 70 RVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERMWXXXXXXXXXXXXXXXX 129
RVI + S S + I+ E + + S Q A+++V + +
Sbjct: 89 RVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDD 148
Query: 130 Y--CGLLAXXXXXXXXXXXXXXXXXXMRIESGAKIVML------PPPACAAIDDQLIQIT 181
+ C LL +R + A + ++ P CA D ++ I+
Sbjct: 149 FRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMIS 208
Query: 182 GXXXXXXXXXXXXXXCLQHLS---------TMEKSPICFNRPIEKVFYSNSS-DPHRE-F 230
G + +S T+++ P P + Y + P ++
Sbjct: 209 GETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQDSI 268
Query: 231 FPHLSLVPPLTGN-PS---DNASE-FHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTA 285
F H + V G P +NA+ SA A G R +++A++++ S
Sbjct: 269 FQHGANVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKI 328
Query: 286 SGIIGKRGAIVRSLQNASGALISFAAPLTKSGER-VVTISALEYLDTRHSPVQNAAVLVF 344
+IGK G ++ ++ ASG+ I T + V+T++A E D S A VL+
Sbjct: 329 GRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEA-VLLL 387
Query: 345 ARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404
+ E + D V + +LV + +GC+ G S +SE+ T DI + G
Sbjct: 388 QEKINDEDE----------DKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKG 437
Query: 405 EQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN-LKSGEILNEARPRSPSGRVGGP 463
CA ND +++ISGE NV++AL ++V RLR + L+ E + +P + S
Sbjct: 438 NNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQPPARSENNNFF 497
Query: 464 ALHKLHQSVALSPEFEQETIAVQGVD 489
+ + +AL F V VD
Sbjct: 498 SSSSSNTGLALPQSFMSSVPQVASVD 523
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 209 (78.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 75/310 (24%), Positives = 138/310 (44%)
Query: 154 MRIESGAKIVMLPP----PACAAIDDQLIQITGXXXXXXXXXXXXXXCLQHLSTMEKSPI 209
MRIE+ I +LP P C ++ ++++QI G L+ ++S
Sbjct: 201 MRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRESQHRDRSNF 260
Query: 210 CFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLD--K 267
+ ++ + D + S GN +N F S ++ + P + +
Sbjct: 261 QGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFRNN--NFSSRQSNYAEEAPAVPVGE 318
Query: 268 KGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALE 327
+E+ ++L ++G+ I+ LQN G + + P+ S E+++TIS+ E
Sbjct: 319 NVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEE 378
Query: 328 YLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSA 387
D P Q A + + + +++ +K + + +LV + CL G S
Sbjct: 379 APDDPFFPAQEALLHIQTQIIDLI--------PDKDNLITTRLLVPSRDSICLEGKAGS- 429
Query: 388 VSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNLKSGEI 447
VSE+ +TGT ++++ E++ CA+ NDVVIQI+GE + + AL E+ LR ++
Sbjct: 430 VSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKELS 489
Query: 448 LNEARPRSPS 457
E P S S
Sbjct: 490 QKETPPASTS 499
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 44/148 (29%), Positives = 65/148 (43%)
Query: 277 RMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDT----- 331
R+L A G+IGK G I++S++ +GA I+ + ER++ IS D
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRMP 130
Query: 332 RHSPVQNAAVLVFARSVEVEGQQGFSSG--ENK---------GDAVAVSILVGADFVGCL 380
SP Q A V R +E E Q G+ E + G V ++V VGCL
Sbjct: 131 SFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCL 190
Query: 381 TGSGSSAVSEMEDVTGTDIKLVGGEQVL 408
G G + +M T T I+++ E L
Sbjct: 191 LGKGGKIIEQMRIETKTHIRILPRESNL 218
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 197 (74.4 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 59/235 (25%), Positives = 108/235 (45%)
Query: 208 PICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDK 267
P+ + +V +P R F HL L + A ++ + R++
Sbjct: 205 PLVVREALYQVASLLHDNPSR--FQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRD 262
Query: 268 KGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALE 327
+E + + G+IGK G + ++ +GA I T + ++ IS+ E
Sbjct: 263 IADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKE 322
Query: 328 YLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGD-AVAVSILVGADFVGCLTGSGSS 386
+ + + SP NAA+ + R E G++ D A++ +LV + +GCL G G +
Sbjct: 323 FYEDQ-SPAVNAAIRLQQRCSE-------KVGKDANDLAISTRLLVSSSQIGCLIGKGGA 374
Query: 387 AVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441
+SEM VT +I+++ E V A +++ ++QI+G AL++V+ RLR N
Sbjct: 375 VISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRAN 429
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 61/251 (24%), Positives = 104/251 (41%)
Query: 242 GNPSDNASEFHSSSADADRD-HPGLDKKG-RKQEVALRMLFSGWTASGIIGKRGAIVRSL 299
G S+ SEF + R+ H D+ ++ R L IIGK G I + +
Sbjct: 10 GKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQI 69
Query: 300 QNASGALISFAAPLTKSGERVVTI-SALEYL----DTRH--SPVQNAAVLVFARSV-EVE 351
++ + + + L ERVVT+ S E L D P +A V V + +
Sbjct: 70 RSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVADAD 129
Query: 352 GQQGFSSGENKGD--AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLG 409
G + G+ V V +LV +D +GC+ G G + + + T I+++ + +
Sbjct: 130 QDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIK-DHLPA 188
Query: 410 CAA--QNDVVIQISGEYKNVQNALSEVVGRLRHNLKSGEIL----NEARPRSPSGRVGGP 463
CA +D ++ I GE V+ AL +V L N + L + + P +
Sbjct: 189 CALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSA 248
Query: 464 ALHKLHQSVAL 474
AL H++ A+
Sbjct: 249 ALTSSHRNYAV 259
Score = 46 (21.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 22 DDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFPGSDHRVI 72
+D V +R +CP +TK + PG + RV+
Sbjct: 42 EDTV-YRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVV 91
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 200 (75.5 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 57/212 (26%), Positives = 105/212 (49%)
Query: 232 PHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGK 291
P L + PL G+ +A ++ R+ P E +R++ + +IGK
Sbjct: 248 PRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPAT------EFFIRLVSPVENIASVIGK 301
Query: 292 RGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFAR-SVEV 350
GA++ L+ + A I + T+ + ++TISA E + +SP A + + + S +V
Sbjct: 302 GGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKV 361
Query: 351 EGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGC 410
E G S + +LV + +GC+ G G + ++EM +T +I+++G E +
Sbjct: 362 ERDSGLVSFTTR-------LLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKV 414
Query: 411 AAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442
A+ +D ++QISGE + AL ++ RLR N+
Sbjct: 415 ASDDDEMVQISGELDVAKEALIQITSRLRANV 446
Score = 190 (71.9 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 67/232 (28%), Positives = 102/232 (43%)
Query: 246 DNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGA 305
DN D DRD +D+ + R L +IG+ G IV+ L+N + +
Sbjct: 27 DNGGSKRRYRGD-DRDSLVIDR----DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRS 81
Query: 306 LISFAAPLTKSGERVVTISALE-----YLDTRH--SPVQNAAVLVFARSVEVEGQQGFS- 357
I + ERV+TI + + D SP Q+A + R V + + S
Sbjct: 82 KIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSP 141
Query: 358 SGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVV 417
GE + V +LV +D +GC+ G G V + TG I++V + CA +D +
Sbjct: 142 EGEKQ---VTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDEL 198
Query: 418 IQISGEYKNVQNALSEVVGRLRHNLKSGEILNEARPRSPSGRV----GGPAL 465
IQISGE V+ AL ++ RL N + L + P+G + GGP L
Sbjct: 199 IQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPRL 250
Score = 158 (60.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 80/346 (23%), Positives = 132/346 (38%)
Query: 22 DDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFPGSDHRVILVVGSGSID 81
DD V FR +CP + DT+ +I PG D RVI + D
Sbjct: 48 DDTV-FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPS--D 104
Query: 82 RRIMFCENDVVVEGGEVSSTQEAVIRVFERMWXXXXXXXXXXXXXXXXYCGLLAXXXXXX 141
F + + V+ S Q+A+ R+ +R+ LL
Sbjct: 105 ETNAFGDGEKVL-----SPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIG 159
Query: 142 XXXXXXXXXXXXMRIESGAKIVMLPP---PACAAIDDQLIQITGXXXXXXXXXXXXXXCL 198
+R E+GA+I ++ P CA D+LIQI+G L
Sbjct: 160 CILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKAL------L 213
Query: 199 QHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLS---LV--PPLTGNPSDNASEFHS 253
Q S + ++P +R + + S+ P H LV PL G+ +A ++
Sbjct: 214 QIASRLHENP---SRS-QNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSR 269
Query: 254 SSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPL 313
R+ P E +R++ + +IGK GA++ L+ + A I +
Sbjct: 270 PLYQPPRNDPPAT------EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSR 323
Query: 314 TKSGERVVTISALEYLDTRHSPVQNAAVLVFAR-SVEVEGQQGFSS 358
T+ + ++TISA E + +SP A + + + S +VE G S
Sbjct: 324 TEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVS 369
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 160 (61.4 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 52/209 (24%), Positives = 90/209 (43%)
Query: 242 GNPSDNASEFHSSSADADRDHPGLDKK--GRKQEVALRMLFSGWTASGIIGKRGAIVRSL 299
G P ++ S + D G +K+ G E RML IIG++G +++ +
Sbjct: 154 GIP-EHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKI 212
Query: 300 QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSG 359
+ A I + ER V +S E ++ P + + V R V+ G G +S
Sbjct: 213 VEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVD--GLDGEASQ 270
Query: 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQ 419
V+ +LV A G L G V +++ + ++++G E + A Q+D V++
Sbjct: 271 APPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVE 330
Query: 420 ISGEYKNVQNALSEVVGRLRHNLKSGEIL 448
+ GE +V AL + LR L I+
Sbjct: 331 VVGEPTSVHRALELIASHLRKFLVDRSII 359
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 140 (54.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTR 332
+ RM+ IIG++G ++ + + A I + +R+V IS E +
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 333 HSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVA-VSILVGADFVGCLTGSGSSAVSEM 391
SP +A + VF R + +N G + V +LV + L G S + +
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDD-DDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSI 191
Query: 392 EDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442
+ +G ++++ E+ AAQ++ ++ + GE + AL +VG LR L
Sbjct: 192 VENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFL 242
Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 455 SPS-GRVGGPALHKLHQSVALSPEFEQETIAVQGVDQFVLPLNRSQTLQVK 504
SP RV + ++ Q++ + + ++ I V+G + + T+ +K
Sbjct: 327 SPGLARVSSAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIK 377
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 117 (46.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 42/165 (25%), Positives = 77/165 (46%)
Query: 264 GLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSG--ERVV 321
G R +E+ ++L +IGK G+ ++ ++ ASG+ I TK G E V+
Sbjct: 302 GFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVI 361
Query: 322 TISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLT 381
++A E D S A +L+ Q + + E+ + V + +LV + +GC+
Sbjct: 362 IVTATESPDDMKSMAVEAVLLL----------QEYINDED-AENVKMQLLVSSKVIGCVI 410
Query: 382 GSGSSAVSEMEDVTGTDIKLVGGE-----QVLG-CAAQNDVVIQI 420
G S ++E+ T +I + G+ +V G ++ D +IQI
Sbjct: 411 GKSGSVINEIRKRTNANICISKGKKDDLVEVSGEVSSVRDALIQI 455
Score = 102 (41.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 346 RSVEVEGQQGFSSGENKGDA--VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403
+S+ VE N DA V + +LV + +GC+ G S ++E+ T +I +
Sbjct: 373 KSMAVEAVLLLQEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK 432
Query: 404 GEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNLKSGEILNEARPRSPSGR 459
G++ D ++++SGE +V++AL ++V RLR ++ + + R P R
Sbjct: 433 GKK--------DDLVEVSGEVSSVRDALIQIVLRLREDVLGDK--DSVATRKPPAR 478
Score = 62 (26.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 22 DDVVSFRLVCPTPVVXXXXXXXXXXXXXXXXDTKCRIHCEGGFPGSDHRVILVVGS-GSI 80
D++V +R++CP VV +TK +I G RVI + S
Sbjct: 33 DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEK 92
Query: 81 DRRIMFCENDVVVEGGEVSSTQEAVIRVFE 110
I F ++ E + Q+A+++V++
Sbjct: 93 QEEIGFTKS----ENEPLCCAQDALLKVYD 118
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 53/213 (24%), Positives = 90/213 (42%)
Query: 264 GLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTI 323
G+ + G + +R+L G IIGK+G V+ ++ SGA I+ + S ER+VTI
Sbjct: 7 GVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTI 64
Query: 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGF-SSGENKGDAVAVSILVGADFVGCLTG 382
T S V A + A E + +S V + ++ A G L G
Sbjct: 65 -------TGASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIG 117
Query: 383 SGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442
G S + E+ + TG +++ G +L + + V I SG + + + + +
Sbjct: 118 KGGSKIKEIRESTGAQVQVAG--DLLPDSTERAVTI--SGTPHAITQCVKHICTVMLESP 173
Query: 443 KSGEILNEARPRSPSGRVGGPALHKLHQSVALS 475
G + RP+ PS G L + H + A +
Sbjct: 174 PKGATI-PYRPK-PSAGGGHTVLTQPHAATAFA 204
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 99 (39.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 25/103 (24%), Positives = 48/103 (46%)
Query: 361 NKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQI 420
N+ + V D +GC+ G G + ++E+ ++G I++ E+ G D I I
Sbjct: 281 NRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREG--GNTDRTITI 338
Query: 421 SGEYKNVQNALSEVVGRLRHNLKSGEILNEARPRSPSGRVGGP 463
SG +V AL++ + + L+ +L +A+ + G P
Sbjct: 339 SGNPDSV--ALAQYLINMSVELQKANLLEQAQSQQNGGAAAAP 379
Score = 74 (31.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 271 KQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTIS 324
K ++ +R++ +IGK G+ ++ ++ +G I A+ L S ER VT+S
Sbjct: 100 KTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLS 154
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 55/214 (25%), Positives = 92/214 (42%)
Query: 261 DHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSG 317
D G +G + E L++L + A IIGK G + LQ +GA I + +
Sbjct: 44 DERGWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTT 103
Query: 318 ERVVTISAL-EYLDTRHSPV-QNAAVLVFARSV-EVEGQQGFSSGENKGDAVAVSILVGA 374
ERV + E L+ HS + + + A + EV + N A ++V
Sbjct: 104 ERVCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN 163
Query: 375 DFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434
G + G G + V + + +G ++L ++ G Q VV +SGE + V A+S +
Sbjct: 164 STAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVT-VSGEPEQVHKAVSAI 220
Query: 435 VGRLRHNLKSGEILN-----EARPRSPSGRVGGP 463
V +++ + +S LN A P + S G P
Sbjct: 221 VQKVQEDPQSSSCLNISYANVAGPVANSNPTGSP 254
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 109 (43.4 bits), Expect = 0.00020, P = 0.00020
Identities = 38/144 (26%), Positives = 65/144 (45%)
Query: 264 GLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTI 323
G+ + G + +R+L G IIGK+G V+ ++ SGA I+ + ER++T+
Sbjct: 4 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Query: 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDA----VAVSILVGADFVGC 379
+ P NA FA ++ + SS N A V + ++V A G
Sbjct: 62 AG---------PT-NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGS 111
Query: 380 LTGSGSSAVSEMEDVTGTDIKLVG 403
L G G + E+ + TG +++ G
Sbjct: 112 LIGKGGCKIKEIRESTGAQVQVAG 135
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 53/216 (24%), Positives = 93/216 (43%)
Query: 264 GLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTI 323
G+ + G + +R+L G IIGK+G V+ ++ SGA I+ + ER++T+
Sbjct: 4 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Query: 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDA----VAVSILVGADFVGC 379
+ P NA FA ++ + SS N A V + ++V A G
Sbjct: 62 AG---------PT-NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGS 111
Query: 380 LTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLR 439
L G G + E+ + TG +++ G +L + + I I+G +++ + ++ +
Sbjct: 112 LIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTER--AITIAGIPQSIIECVKQICVVML 167
Query: 440 HNLKSGE---ILNEARPRSPSGRV--GGPALHKLHQ 470
L + RP+ S V G L KLHQ
Sbjct: 168 ETLSQSPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQ 203
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 46/188 (24%), Positives = 82/188 (43%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 11 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 65
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 66 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 122
Query: 389 SEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEI 447
EM + TG +++ G +L + + V I SG + + + ++ V L K I
Sbjct: 123 KEMRESTGAQVQVAG--DMLPNSTERAVTI--SGTPEAIIQCVKQICVVMLESPPKGATI 178
Query: 448 LNEARPRS 455
+P S
Sbjct: 179 PYRPKPAS 186
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 52/229 (22%), Positives = 94/229 (41%)
Query: 238 PPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVR 297
PP+ + + H + + + G + +R+L G IIGK+G V+
Sbjct: 10 PPILPHSTLGTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVK 69
Query: 298 SLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFS 357
++ SGA I+ + ER+VTI+ + + A++ + ++ S
Sbjct: 70 KMREESGARINISEG--NCPERIVTITG-----PTDAIFKAFAMIAYKFEEDIINSMSNS 122
Query: 358 SGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVV 417
+K V + ++V A G L G G S + E+ + TG +++ G +L + + V
Sbjct: 123 PATSK-PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVT 179
Query: 418 IQISGEYKNVQNALSEV-VGRLRHNLKSGEILNEARPRS-PSGRVGGPA 464
I SG + + ++ V L K I +P S P GG A
Sbjct: 180 I--SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQA 226
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 49/198 (24%), Positives = 85/198 (42%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 9 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 63
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 64 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 120
Query: 389 SEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEI 447
E+ + TG +++ G +L + + V I SG + + ++ V L K I
Sbjct: 121 KEIRESTGAQVQVAG--DMLPNSTERAVTI--SGTPDAIIQCVKQICVVMLESPPKGATI 176
Query: 448 LNEARPRS-PSGRVGGPA 464
+P S P GG A
Sbjct: 177 PYRPKPASTPVIFAGGQA 194
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 55/232 (23%), Positives = 96/232 (41%)
Query: 235 SLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRGA 294
S++P T + + E H + G G + +R+L G IIGK+G
Sbjct: 11 SILPHSTLSTLSHHPELHFGGKMESKVSEG----GLNVTLTIRLLMHGKEVGSIIGKKGE 66
Query: 295 IVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQ 354
V+ ++ SGA I+ + ER+VTI+ + + A++ + ++
Sbjct: 67 TVKKMREESGARINISEG--NCPERIVTITG-----PTDAIFKAFAMIAYKFEEDIINSM 119
Query: 355 GFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQN 414
S +K V + ++V A G L G G S + E+ + TG +++ G +L + +
Sbjct: 120 SNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTER 176
Query: 415 DVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEILNEARPRS-PSGRVGGPA 464
V I SG + + ++ V L K I +P S P GG A
Sbjct: 177 AVTI--SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQA 226
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 49/198 (24%), Positives = 85/198 (42%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 95
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 96 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 152
Query: 389 SEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEI 447
E+ + TG +++ G +L + + V I SG + + ++ V L K I
Sbjct: 153 KEIRESTGAQVQVAG--DMLPNSTERAVTI--SGTPDAIIQCVKQICVVMLESPPKGATI 208
Query: 448 LNEARPRS-PSGRVGGPA 464
+P S P GG A
Sbjct: 209 PYRPKPASTPVIFAGGQA 226
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 49/198 (24%), Positives = 85/198 (42%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 95
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 96 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 152
Query: 389 SEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEI 447
E+ + TG +++ G +L + + V I SG + + ++ V L K I
Sbjct: 153 KEIRESTGAQVQVAG--DMLPNSTERAVTI--SGTPDAIIQCVKQICVVMLESPPKGATI 208
Query: 448 LNEARPRS-PSGRVGGPA 464
+P S P GG A
Sbjct: 209 PYRPKPASTPVIFAGGQA 226
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 49/198 (24%), Positives = 85/198 (42%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 95
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 96 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 152
Query: 389 SEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV-VGRLRHNLKSGEI 447
E+ + TG +++ G +L + + V I SG + + ++ V L K I
Sbjct: 153 KEIRESTGAQVQVAG--DMLPNSTERAVTI--SGTPDAIIQCVKQICVVMLESPPKGATI 208
Query: 448 LNEARPRS-PSGRVGGPA 464
+P S P GG A
Sbjct: 209 PYRPKPASTPVIFAGGQA 226
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
Identities = 53/206 (25%), Positives = 89/206 (43%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISA 325
G + E L++L + A IIGK G + LQ +GA I + + ERV +
Sbjct: 28 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 87
Query: 326 L-EYLDTRHSPV-QNAAVLVFARSV-EVEGQQGFSSGENKGDAVAVSILVGADFVGCLTG 382
E L+ HS + + + A + EV + N A ++V G + G
Sbjct: 88 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIG 147
Query: 383 SGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442
G + V + + +G ++L ++ G Q VV +SGE + V A+S +V +++ +
Sbjct: 148 KGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVT-VSGEPEQVHKAVSAIVQKVQEDP 204
Query: 443 KSGEILN-----EARPRSPSGRVGGP 463
+S LN A P + S G P
Sbjct: 205 QSSSCLNISYANVAGPVANSNPTGSP 230
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 118 (46.6 bits), Expect = 0.00083, P = 0.00083
Identities = 53/206 (25%), Positives = 89/206 (43%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISA 325
G + E L++L + A IIGK G + LQ +GA I + + ERV +
Sbjct: 90 GEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 149
Query: 326 L-EYLDTRHSPV-QNAAVLVFARSV-EVEGQQGFSSGENKGDAVAVSILVGADFVGCLTG 382
E L+ HS + + + A + EV + N A ++V G + G
Sbjct: 150 TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIG 209
Query: 383 SGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442
G + V + + +G ++L ++ G Q VV +SGE + V A+S +V +++ +
Sbjct: 210 KGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVT-VSGEPEQVHKAVSAIVQKVQEDP 266
Query: 443 KSGEILN-----EARPRSPSGRVGGP 463
+S LN A P + S G P
Sbjct: 267 QSSSCLNISYANVAGPVANSNPTGSP 292
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00092
Identities = 38/144 (26%), Positives = 65/144 (45%)
Query: 264 GLDKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTI 323
G+ + G + +R+L G IIGK+G V+ ++ SGA I+ + ER++T+
Sbjct: 4 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Query: 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDA----VAVSILVGADFVGC 379
+ P NA FA ++ + SS N A V + ++V A G
Sbjct: 62 AG---------PT-NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGS 111
Query: 380 LTGSGSSAVSEMEDVTGTDIKLVG 403
L G G + E+ + TG +++ G
Sbjct: 112 LIGKGGCKIKEIRESTGAQVQVAG 135
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 114 (45.2 bits), Expect = 0.00095, P = 0.00095
Identities = 34/135 (25%), Positives = 62/135 (45%)
Query: 269 GRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEY 328
G + +R+L G IIGK+G V+ ++ SGA I+ + ER+VTI+
Sbjct: 17 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG--- 71
Query: 329 LDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAV 388
+ + A++ + ++ S +K V + ++V A G L G G S +
Sbjct: 72 --PTDAIFKAFAMIAYKFEEDIINSMSNSPATSK-PPVTLRLVVPASQCGSLIGKGGSKI 128
Query: 389 SEMEDVTGTDIKLVG 403
E+ + TG +++ G
Sbjct: 129 KEIRESTGAQVQVAG 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 528 464 0.00097 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 609 (65 KB)
Total size of DFA: 259 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.34u 0.19s 36.53t Elapsed: 00:00:02
Total cpu time: 36.35u 0.20s 36.55t Elapsed: 00:00:02
Start: Fri May 10 21:26:50 2013 End: Fri May 10 21:26:52 2013