Query 009695
Match_columns 528
No_of_seqs 250 out of 1968
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 8.4E-27 2.9E-31 217.4 9.8 161 22-202 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 1.6E-25 5.5E-30 205.6 14.2 153 25-201 3-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.1E-25 7.2E-30 204.2 12.3 155 23-200 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 3.1E-25 1.1E-29 205.9 11.8 159 23-198 1-174 (174)
5 3krm_A Insulin-like growth fac 99.9 1.1E-24 3.9E-29 200.0 12.7 154 274-441 3-157 (163)
6 2anr_A Neuro-oncological ventr 99.9 4.3E-25 1.5E-29 205.7 10.0 163 271-442 3-177 (178)
7 2jvz_A KH type-splicing, FAR u 99.9 8.5E-25 2.9E-29 201.0 10.0 154 25-200 2-160 (164)
8 2jzx_A Poly(RC)-binding protei 99.9 1.3E-24 4.4E-29 199.0 10.3 156 272-440 3-159 (160)
9 2jvz_A KH type-splicing, FAR u 99.9 1.1E-23 3.8E-28 193.5 12.6 156 274-441 2-161 (164)
10 1j4w_A FUSE binding protein; s 99.9 9.5E-24 3.2E-28 195.9 10.7 158 273-438 2-174 (174)
11 3n89_A Defective in GERM LINE 99.9 4.6E-23 1.6E-27 209.2 13.6 225 126-439 27-260 (376)
12 3n89_A Defective in GERM LINE 99.8 3.1E-20 1.1E-24 188.5 16.9 296 18-436 23-337 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 3E-18 1E-22 153.3 8.9 137 273-440 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 7.2E-18 2.5E-22 150.9 8.7 136 24-200 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 5.3E-16 1.8E-20 147.5 10.0 146 26-201 35-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.6 1.9E-15 6.6E-20 143.7 7.7 146 275-440 35-191 (219)
17 2axy_A Poly(RC)-binding protei 99.5 1.1E-14 3.8E-19 114.6 5.2 71 363-440 2-72 (73)
18 1zzk_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 114.5 7.1 74 363-441 4-77 (82)
19 1dtj_A RNA-binding neurooncolo 99.5 3.3E-14 1.1E-18 112.9 6.3 74 365-440 2-75 (76)
20 2axy_A Poly(RC)-binding protei 99.5 2.6E-14 8.8E-19 112.5 5.6 69 128-200 4-72 (73)
21 2p2r_A Poly(RC)-binding protei 99.5 2.2E-14 7.4E-19 113.9 5.2 72 364-440 3-74 (76)
22 1wvn_A Poly(RC)-binding protei 99.5 3.2E-14 1.1E-18 114.7 5.6 74 363-441 3-76 (82)
23 1tua_A Hypothetical protein AP 99.5 1.3E-13 4.4E-18 127.9 9.8 145 27-201 6-161 (191)
24 1wvn_A Poly(RC)-binding protei 99.5 6.1E-14 2.1E-18 113.0 6.6 74 126-201 3-76 (82)
25 2dgr_A Ring finger and KH doma 99.4 5.2E-14 1.8E-18 113.2 5.0 70 362-439 6-75 (83)
26 1x4n_A FAR upstream element bi 99.4 1.6E-13 5.6E-18 112.9 7.9 74 363-441 12-85 (92)
27 2p2r_A Poly(RC)-binding protei 99.4 8.4E-14 2.9E-18 110.5 5.8 71 128-200 4-74 (76)
28 1zzk_A Heterogeneous nuclear r 99.4 1.4E-13 5E-18 110.8 7.2 72 127-200 5-76 (82)
29 1dtj_A RNA-binding neurooncolo 99.4 1.3E-13 4.4E-18 109.5 6.7 73 128-200 2-75 (76)
30 1ec6_A RNA-binding protein NOV 99.4 8.9E-14 3E-18 113.4 5.5 75 366-442 3-77 (87)
31 1j5k_A Heterogeneous nuclear r 99.4 8.7E-14 3E-18 113.8 5.2 74 363-441 11-84 (89)
32 2opv_A KHSRP protein; KH domai 99.4 4.8E-13 1.6E-17 108.5 7.7 74 364-440 12-85 (85)
33 1j5k_A Heterogeneous nuclear r 99.4 2.1E-13 7.1E-18 111.6 5.5 74 125-200 10-83 (89)
34 2hh2_A KH-type splicing regula 99.4 2.9E-13 1E-17 114.6 6.3 73 367-441 8-80 (107)
35 2opv_A KHSRP protein; KH domai 99.4 7.2E-13 2.5E-17 107.4 8.2 76 125-200 10-85 (85)
36 1x4m_A FAR upstream element bi 99.4 4.4E-13 1.5E-17 110.8 6.6 76 362-440 11-86 (94)
37 1ec6_A RNA-binding protein NOV 99.4 3.2E-13 1.1E-17 110.0 5.3 74 128-201 2-76 (87)
38 2hh3_A KH-type splicing regula 99.4 4.4E-13 1.5E-17 112.9 6.3 72 365-441 10-81 (106)
39 1tua_A Hypothetical protein AP 99.4 3.6E-13 1.2E-17 124.9 6.0 145 276-440 6-160 (191)
40 1we8_A Tudor and KH domain con 99.4 1.1E-12 3.7E-17 110.6 7.7 78 362-442 11-88 (104)
41 1x4n_A FAR upstream element bi 99.4 6.3E-13 2.1E-17 109.4 6.1 74 126-201 12-85 (92)
42 1x4m_A FAR upstream element bi 99.4 6.5E-13 2.2E-17 109.8 6.0 77 125-201 11-87 (94)
43 2hh2_A KH-type splicing regula 99.4 6.7E-13 2.3E-17 112.3 6.2 72 130-201 8-80 (107)
44 2ctm_A Vigilin; K homology typ 99.3 1.3E-12 4.4E-17 108.0 7.1 77 362-444 13-89 (95)
45 2dgr_A Ring finger and KH doma 99.3 7.9E-13 2.7E-17 106.3 4.8 71 125-200 6-76 (83)
46 2cte_A Vigilin; K homology typ 99.3 1.5E-12 5E-17 107.6 5.8 72 363-441 14-85 (94)
47 2ctl_A Vigilin; K homology typ 99.3 2.9E-12 9.9E-17 106.3 7.6 73 364-440 15-87 (97)
48 1vig_A Vigilin; RNA-binding pr 99.3 1.7E-12 5.9E-17 101.4 5.6 68 364-438 3-70 (71)
49 1we8_A Tudor and KH domain con 99.3 3.3E-12 1.1E-16 107.6 6.6 76 127-202 13-88 (104)
50 2hh3_A KH-type splicing regula 99.3 2.4E-12 8.3E-17 108.4 5.8 72 128-201 10-81 (106)
51 2ctk_A Vigilin; K homology typ 99.2 7.9E-12 2.7E-16 105.0 5.8 71 364-441 15-85 (104)
52 1vig_A Vigilin; RNA-binding pr 99.2 9.6E-12 3.3E-16 97.1 5.6 67 128-198 4-70 (71)
53 2cte_A Vigilin; K homology typ 99.2 2.4E-11 8.2E-16 100.3 7.6 69 10-80 2-70 (94)
54 2ctl_A Vigilin; K homology typ 99.2 2.6E-11 8.8E-16 100.6 6.7 72 128-200 16-87 (97)
55 2ctm_A Vigilin; K homology typ 99.2 3.4E-11 1.2E-15 99.4 6.2 73 125-200 13-85 (95)
56 2ctj_A Vigilin; K homology typ 99.1 6.1E-11 2.1E-15 97.7 5.4 73 362-441 13-86 (95)
57 2ctk_A Vigilin; K homology typ 99.1 1.1E-10 3.6E-15 98.1 5.7 69 128-200 16-84 (104)
58 2ctf_A Vigilin; K homology typ 99.1 2.2E-10 7.4E-15 95.8 6.6 67 365-441 26-93 (102)
59 2ctf_A Vigilin; K homology typ 99.0 3.5E-10 1.2E-14 94.5 6.7 67 128-201 26-93 (102)
60 2ctj_A Vigilin; K homology typ 99.0 6.4E-10 2.2E-14 91.6 5.6 72 125-200 13-85 (95)
61 2cpq_A FragIle X mental retard 98.9 1.2E-09 4.1E-14 88.4 3.7 73 363-445 12-86 (91)
62 2cpq_A FragIle X mental retard 98.6 3.3E-08 1.1E-12 80.0 5.1 65 126-197 12-78 (91)
63 1k1g_A SF1-BO isoform; splicin 98.5 3E-07 1E-11 80.0 7.4 77 364-440 5-99 (131)
64 1k1g_A SF1-BO isoform; splicin 98.4 3.2E-07 1.1E-11 79.9 6.8 73 128-200 6-99 (131)
65 2yqr_A KIAA0907 protein; struc 98.4 8E-07 2.7E-11 75.8 8.4 77 364-440 10-99 (119)
66 2yqr_A KIAA0907 protein; struc 98.4 5.7E-07 2E-11 76.7 6.7 73 128-200 11-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.0 4.7E-06 1.6E-10 72.9 5.3 72 129-200 2-101 (140)
68 2bl5_A MGC83862 protein, quaki 97.9 8E-06 2.7E-10 71.4 4.1 74 366-439 2-100 (140)
69 3u1k_A Polyribonucleotide nucl 97.8 1.5E-05 5.1E-10 86.8 6.0 93 98-198 536-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.8 1.6E-05 5.6E-10 86.5 5.9 90 336-438 539-629 (630)
71 3v69_A Protein filia; RNA-bind 97.7 5.9E-05 2E-09 64.6 6.6 68 368-441 58-125 (140)
72 2cxc_A NUSA; transcription ter 97.6 2.7E-05 9.2E-10 68.5 3.6 103 25-165 36-139 (144)
73 4aid_A Polyribonucleotide nucl 97.2 0.0002 6.8E-09 78.9 4.5 96 336-444 542-638 (726)
74 3v69_A Protein filia; RNA-bind 97.1 0.00065 2.2E-08 58.2 5.7 66 131-199 58-123 (140)
75 4aid_A Polyribonucleotide nucl 97.1 0.00025 8.5E-09 78.1 3.6 95 98-200 539-634 (726)
76 2cxc_A NUSA; transcription ter 97.0 0.00019 6.5E-09 63.1 2.1 101 275-402 37-139 (144)
77 2asb_A Transcription elongatio 96.1 0.0028 9.4E-08 60.6 3.4 96 34-167 126-222 (251)
78 1k0r_A NUSA; two component arr 96.0 0.0035 1.2E-07 63.2 3.6 96 34-167 249-345 (366)
79 2asb_A Transcription elongatio 95.4 0.0073 2.5E-07 57.6 2.9 98 283-406 126-224 (251)
80 1k0r_A NUSA; two component arr 94.7 0.014 4.7E-07 58.9 3.0 98 283-406 249-347 (366)
81 1hh2_P NUSA, N utilization sub 94.6 0.021 7.1E-07 57.4 3.8 94 34-166 245-340 (344)
82 3cdi_A Polynucleotide phosphor 94.4 0.012 4.2E-07 65.0 1.9 94 98-199 529-623 (723)
83 3cdi_A Polynucleotide phosphor 94.1 0.016 5.5E-07 64.1 1.9 68 363-441 557-625 (723)
84 1e3p_A Guanosine pentaphosphat 93.7 0.0098 3.3E-07 66.0 -0.7 89 336-438 571-660 (757)
85 1e3p_A Guanosine pentaphosphat 93.1 0.011 3.6E-07 65.8 -1.7 92 98-198 568-660 (757)
86 1hh2_P NUSA, N utilization sub 92.5 0.067 2.3E-06 53.7 3.4 91 283-404 245-341 (344)
87 1wh9_A 40S ribosomal protein S 73.1 1.6 5.5E-05 34.9 2.1 29 26-54 36-64 (92)
88 2pt7_G HP1451, hypothetical pr 70.9 2.3 7.8E-05 37.4 2.8 30 27-56 35-64 (152)
89 2pt7_G HP1451, hypothetical pr 59.2 4 0.00014 35.8 2.0 31 275-305 34-64 (152)
90 1wh9_A 40S ribosomal protein S 53.9 4.3 0.00015 32.4 1.2 27 276-302 37-63 (92)
91 3u5c_D RP13, YS3, 40S ribosoma 42.4 10 0.00035 35.7 2.0 29 27-55 46-74 (240)
92 2kl8_A OR15; structural genomi 41.6 45 0.0015 24.3 4.8 44 388-440 23-66 (85)
93 3j20_C 30S ribosomal protein S 41.1 12 0.0004 34.6 2.1 28 27-54 42-69 (210)
94 2xzm_C KH domain containing pr 39.4 14 0.00048 34.9 2.4 30 26-55 48-77 (243)
95 2ba0_A Archeal exosome RNA bin 38.6 32 0.0011 32.1 4.8 56 368-434 138-193 (229)
96 3iz6_B 40S ribosomal protein S 38.1 11 0.00036 35.3 1.3 30 26-55 45-74 (227)
97 3gku_A Probable RNA-binding pr 33.9 13 0.00044 34.7 1.2 33 27-59 94-126 (225)
98 3r8n_C 30S ribosomal protein S 33.6 11 0.00039 34.6 0.7 27 27-53 63-89 (206)
99 3iev_A GTP-binding protein ERA 32.8 11 0.00039 36.6 0.7 37 128-164 239-284 (308)
100 2zkq_c 40S ribosomal protein S 32.5 13 0.00044 35.1 0.9 30 26-55 45-74 (243)
101 3i1m_C 30S ribosomal protein S 30.7 13 0.00045 34.8 0.7 27 27-53 64-90 (233)
102 2vqe_C 30S ribosomal protein S 28.5 20 0.00068 33.7 1.5 28 27-54 64-91 (239)
103 3u5c_D RP13, YS3, 40S ribosoma 26.1 24 0.00082 33.1 1.6 27 276-302 46-72 (240)
104 3bbn_C Ribosomal protein S3; s 25.9 18 0.00063 33.5 0.7 28 27-54 72-99 (218)
105 3iev_A GTP-binding protein ERA 25.7 20 0.00068 34.9 1.0 38 364-401 238-284 (308)
106 3gku_A Probable RNA-binding pr 24.7 19 0.00065 33.6 0.6 33 276-308 94-126 (225)
107 3j20_C 30S ribosomal protein S 23.7 23 0.0008 32.6 1.0 25 277-301 43-67 (210)
108 2xzm_C KH domain containing pr 22.9 30 0.001 32.6 1.6 27 276-302 49-75 (243)
109 3iz6_B 40S ribosomal protein S 21.7 25 0.00084 32.8 0.7 27 276-302 46-72 (227)
110 1wf3_A GTP-binding protein; GT 20.2 25 0.00087 34.0 0.5 36 366-401 230-274 (301)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=8.4e-27 Score=217.37 Aligned_cols=161 Identities=20% Similarity=0.398 Sum_probs=127.1
Q ss_pred CCceEEEEEecccccccccccCchHHHHHHhhhCceEEecCC---CCCCCceEEEEEcCCcchhhhhcccccccccCCCc
Q 009695 22 DDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG---FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEV 98 (528)
Q Consensus 22 ~~~~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~---~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~ 98 (528)
+++++++++||.+++|.||||+|++|++|+++|||+|+|++. .+++++|+|+|+|..+++
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v----------------- 65 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL----------------- 65 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHH-----------------
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHH-----------------
Confidence 678999999999999999999999999999999999999764 467899999999987663
Q ss_pred chHHHHHHHHHHHHhhhhhccC-----------CCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC
Q 009695 99 SSTQEAVIRVFERMWEVEAEVE-----------GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (528)
Q Consensus 99 s~A~~al~~v~~~i~~~~~~~~-----------~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~ 167 (528)
..|.+.+. +.+.+...... .....+...+++|+||.+++|+||||+|++|++|+++|||+|+|.++
T Consensus 66 ~~A~~~I~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 66 NAVHGFIA---EKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHH---HHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHH---HHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 22333332 22222110000 00012235789999999999999999999999999999999999886
Q ss_pred CCCCCCCCceEEEeccHHHHHHHHHHHHHHHccCC
Q 009695 168 PACAAIDDQLIQITGATLAVKKALVAVTTCLQHLS 202 (528)
Q Consensus 168 p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~~ 202 (528)
+.++...++.|+|+|+.++|.+|+.+|.++|+++|
T Consensus 143 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 143 PDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp C----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 44566788999999999999999999999998865
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=205.64 Aligned_cols=153 Identities=20% Similarity=0.317 Sum_probs=125.6
Q ss_pred eEEEEEecccccccccccCchHHHHHHhhhCceEEecCC-CCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHH
Q 009695 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG-FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (528)
Q Consensus 25 ~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~-~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~ 103 (528)
-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+.++ +..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~--------------------v~~ 62 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA--------------------QFK 62 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH--------------------HHH
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH--------------------HHH
Confidence 478999999999999999999999999999999999875 57889999999997765 334
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCC-ceEEEec
Q 009695 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDD-QLIQITG 182 (528)
Q Consensus 104 al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~e-r~V~I~G 182 (528)
|...+.+.+.+.... .+......+++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..+..++ +.|+|+|
T Consensus 63 A~~~I~~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~~~~~~~v~I~G 138 (163)
T 3krm_A 63 AQGRIYGKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPDENDQVIVKIIG 138 (163)
T ss_dssp HHHHHHHHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCCTTSEEEEEEEE
T ss_pred HHHHHHHHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCCCCCceEEEEEe
Confidence 444555544443111 1123446788999999999999999999999999999999999875 2233344 4899999
Q ss_pred cHHHHHHHHHHHHHHHccC
Q 009695 183 ATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 183 ~~~~V~kA~~~I~~~l~~~ 201 (528)
++++|.+|+.+|.+++++.
T Consensus 139 ~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 139 HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=204.23 Aligned_cols=155 Identities=18% Similarity=0.360 Sum_probs=126.5
Q ss_pred CceEEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHH
Q 009695 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (528)
Q Consensus 23 ~~~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~ 102 (528)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-----------------v~--- 60 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-----------------IF--- 60 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-----------------HH---
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-----------------HH---
Confidence 46899999999999999999999999999999999999886 678999999998665 22
Q ss_pred HHHHHHHHHHhhhhhcc-C-CCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEE
Q 009695 103 EAVIRVFERMWEVEAEV-E-GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQI 180 (528)
Q Consensus 103 ~al~~v~~~i~~~~~~~-~-~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I 180 (528)
+|...+.+.+.+..... . +.......++++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..+...++.|+|
T Consensus 61 ~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~~~~~~v~I 139 (160)
T 2jzx_A 61 KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPNSTERAITI 139 (160)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCCCCceEEEE
Confidence 33334444443322110 0 00112346899999999999999999999999999999999999874 456678999999
Q ss_pred eccHHHHHHHHHHHHHHHcc
Q 009695 181 TGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 181 ~G~~~~V~kA~~~I~~~l~~ 200 (528)
+|++++|.+|+.+|.+++.+
T Consensus 140 ~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 140 AGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=3.1e-25 Score=205.94 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=124.1
Q ss_pred CceEEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHH
Q 009695 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (528)
Q Consensus 23 ~~~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~ 102 (528)
|..+++++||.+++|.||||+|++|++|+++|||+|+|.+..++++||+|+|+|+.++ +..|.
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-----------------v~~A~ 63 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-----------------AQHAA 63 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-----------------HHHHH
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-----------------HHHHH
Confidence 4678999999999999999999999999999999999987666788999999999766 33354
Q ss_pred HHHHHHHHHHhhhhhccC--------------CCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC-
Q 009695 103 EAVIRVFERMWEVEAEVE--------------GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP- 167 (528)
Q Consensus 103 ~al~~v~~~i~~~~~~~~--------------~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~- 167 (528)
+.+..++........... ........++++|+||.+++|+||||+|++|++|+++|||+|+|.++
T Consensus 64 ~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 64 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp HHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC
Confidence 444444332211000000 00001235688999999999999999999999999999999999886
Q ss_pred CCCCCCCCceEEEeccHHHHHHHHHHHHHHH
Q 009695 168 PACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (528)
Q Consensus 168 p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l 198 (528)
+.+....++.|+|+|+.++|.+|+.+|.++|
T Consensus 144 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4455678899999999999999999998864
No 5
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=199.99 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=127.5
Q ss_pred eEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCC-CCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhccc
Q 009695 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (528)
Q Consensus 274 ~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~-~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (528)
-+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++.+.+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~------e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP------EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH------HHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHhcccc
Confidence 368899999999999999999999999999999999875 678899999999983 3455677677766655321
Q ss_pred CCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHH
Q 009695 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALS 432 (528)
Q Consensus 353 ~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~ 432 (528)
. .+......+.+|.||.+++|+|||++|++|++|++.|||+|+|++.. .|. ..+++.|+|+|++++|+.|+.
T Consensus 77 ~-----~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 77 F-----GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC-CCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC-CCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 11234567889999999999999999999999999999999997643 343 344458999999999999999
Q ss_pred HHHHHHhhh
Q 009695 433 EVVGRLRHN 441 (528)
Q Consensus 433 ~I~~~l~~~ 441 (528)
+|.++|++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.91 E-value=4.3e-25 Score=205.75 Aligned_cols=163 Identities=21% Similarity=0.339 Sum_probs=127.0
Q ss_pred CcceEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCC---CCCCCccEEEEecccccCCCCChHHHHHHHHHhhh
Q 009695 271 KQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARS 347 (528)
Q Consensus 271 ~~~~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~---~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i 347 (528)
..+++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. .....|..++.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~------~~v~~A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI------EALNAVHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH------HHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH------HHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999753 357889999999983 23445555555554
Q ss_pred hhcccCCC-------CCC--CCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEE
Q 009695 348 VEVEGQQG-------FSS--GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418 (528)
Q Consensus 348 ~e~~~~~~-------~~~--~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V 418 (528)
.+...... .++ ....+...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+....| ...++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEE
Confidence 33211000 000 01123457899999999999999999999999999999999998754322 4578999
Q ss_pred EEcCCHHHHHHHHHHHHHHHhhhc
Q 009695 419 QISGEYKNVQNALSEVVGRLRHNL 442 (528)
Q Consensus 419 ~ItG~~~~v~~A~~~I~~~l~~~~ 442 (528)
+|+|++++|+.|+.+|.++|++++
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSCC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998764
No 7
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=8.5e-25 Score=200.97 Aligned_cols=154 Identities=15% Similarity=0.233 Sum_probs=121.0
Q ss_pred eEEEEEecccccccccccCchHHHHHHhhhCceEEecCC--CCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHH
Q 009695 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG--FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (528)
Q Consensus 25 ~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~--~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~ 102 (528)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .++..+|+|+|+|+.++ +.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-----------------v~--- 61 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-----------------VQ--- 61 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-----------------HH---
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-----------------HH---
Confidence 689999999999999999999999999999999999754 35678999999997665 22
Q ss_pred HHHHHHHHHHhhhhhcc--C-CCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEE
Q 009695 103 EAVIRVFERMWEVEAEV--E-GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQ 179 (528)
Q Consensus 103 ~al~~v~~~i~~~~~~~--~-~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~ 179 (528)
.|...+.+.+.+..... + ........++++|+||..++|+||||+|++|++|+++|||+|+|.+. .+...++.|+
T Consensus 62 ~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~--~~~~~~~~v~ 139 (164)
T 2jvz_A 62 QACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAH 139 (164)
T ss_dssp HHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC--CTTSSEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC--CCCCCcEEEE
Confidence 33333444333322110 0 00001113568899999999999999999999999999999999874 3345689999
Q ss_pred EeccHHHHHHHHHHHHHHHcc
Q 009695 180 ITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 180 I~G~~~~V~kA~~~I~~~l~~ 200 (528)
|+|+.++|.+|+.+|.+++++
T Consensus 140 I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 140 IMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999865
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=198.99 Aligned_cols=156 Identities=21% Similarity=0.402 Sum_probs=126.9
Q ss_pred cceEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcc
Q 009695 272 QEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (528)
Q Consensus 272 ~~~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~ 351 (528)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++.+|.|+|+|+. .....|..++.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~------~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT------NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH------HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH------HHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999864 5678999999983 244566666666554432
Q ss_pred cCCCCCCC-CCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHH
Q 009695 352 GQQGFSSG-ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNA 430 (528)
Q Consensus 352 ~~~~~~~~-~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A 430 (528)
. .+.+.. .......+.+|.||.+++|+||||+|++|++|+++|||+|+|.+. ..| ..+++.|+|+|++++|+.|
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A 149 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIPQSIIEC 149 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCHHHHHHH
Confidence 1 111111 112346899999999999999999999999999999999999753 334 4678999999999999999
Q ss_pred HHHHHHHHhh
Q 009695 431 LSEVVGRLRH 440 (528)
Q Consensus 431 ~~~I~~~l~~ 440 (528)
+.+|.+.|.+
T Consensus 150 ~~~I~~~i~e 159 (160)
T 2jzx_A 150 VKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 9
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=193.53 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=123.6
Q ss_pred eEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCC--CCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcc
Q 009695 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP--LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (528)
Q Consensus 274 ~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~--~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~ 351 (528)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. .....|..++.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP------YKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH------HHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999999999999753 346778999999973 244566666666554432
Q ss_pred cCCCCCCCCCC--CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHH
Q 009695 352 GQQGFSSGENK--GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQN 429 (528)
Q Consensus 352 ~~~~~~~~~~~--~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~ 429 (528)
..++.+.... ....+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.+. ...++.|+|+|++++++.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 76 -QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp -SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESCHHHHHH
T ss_pred -CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcCHHHHHH
Confidence 1111111011 11356899999999999999999999999999999999986532 355799999999999999
Q ss_pred HHHHHHHHHhhh
Q 009695 430 ALSEVVGRLRHN 441 (528)
Q Consensus 430 A~~~I~~~l~~~ 441 (528)
|+.+|.++|++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=9.5e-24 Score=195.92 Aligned_cols=158 Identities=19% Similarity=0.307 Sum_probs=121.5
Q ss_pred ceEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhccc
Q 009695 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (528)
Q Consensus 273 ~~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (528)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|+. .....|..++.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP------DRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH------HHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH------HHHHHHHHHHHHHHHhccc
Confidence 3578899999999999999999999999999999999876667889999999983 2344555555544433210
Q ss_pred C-CCC--CCC------------CCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcE
Q 009695 353 Q-QGF--SSG------------ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVV 417 (528)
Q Consensus 353 ~-~~~--~~~------------~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~ 417 (528)
. .+. +.+ .......+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. +.+.+.+++.
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~ 153 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKL 153 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceE
Confidence 0 000 000 0012346889999999999999999999999999999999998743 2223567899
Q ss_pred EEEcCCHHHHHHHHHHHHHHH
Q 009695 418 IQISGEYKNVQNALSEVVGRL 438 (528)
Q Consensus 418 V~ItG~~~~v~~A~~~I~~~l 438 (528)
|+|+|++++|+.|+.+|.++|
T Consensus 154 v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 154 FTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.89 E-value=4.6e-23 Score=209.24 Aligned_cols=225 Identities=17% Similarity=0.101 Sum_probs=160.0
Q ss_pred CCceEEEEEeecceeeEEecCCC--hHHHHHHhhhCCeEEEcCCC---CCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 126 DDVAYCGLLANTTKIGVVVGKGG--RNVTRMRIESGAKIVMLPPP---ACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 126 ~~~v~~rllVp~~~vG~IIGkgG--~~Ik~I~~~tGa~I~i~~~p---~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
...+|+.+-||..+++.|||||| ++|++|+++|||+|++.... ..+......|+|+|..++|++|+.+|.+++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~-- 104 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC-- 104 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC--
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC--
Confidence 45899999999999999999999 99999999999999997631 112245578999999999999999987743
Q ss_pred CCCCCCCCcccCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCcceEEEEEe
Q 009695 201 LSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLF 280 (528)
Q Consensus 201 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~y~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~v 280 (528)
.+++.+.+
T Consensus 105 ------------------------------------------------------------------------Pl~i~~el 112 (376)
T 3n89_A 105 ------------------------------------------------------------------------HFTVFMAL 112 (376)
T ss_dssp ------------------------------------------------------------------------EEEEEEEC
T ss_pred ------------------------------------------------------------------------CceEEEEc
Confidence 11222333
Q ss_pred eccccceeeccCCchhHhhHhhcCeeEEEeCCCC--CCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcccCCCCCC
Q 009695 281 SGWTASGIIGKRGAIVRSLQNASGALISFAAPLT--KSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSS 358 (528)
Q Consensus 281 P~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~--~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~~~~~ 358 (528)
|...++. ...+..|.+ ++..|++|+|..... +.....|+|+|.+. ....+.+|+..+.+.+.+..
T Consensus 113 p~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~---nv~~akeA~~~Ll~~l~~~e------- 179 (376)
T 3n89_A 113 SKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREK---NQHELIEAAKRLNEILFRES------- 179 (376)
T ss_dssp TTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGG---GHHHHHHHHHHHHHHHCC---------
T ss_pred cccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChh---hHHHHHHHHHHHHHHHHhhh-------
Confidence 3322221 111223444 567999999864311 12356799999852 12345677777777664421
Q ss_pred CCCCCCceEEEEEeCCcceeeeecCCC--chhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHH
Q 009695 359 GENKGDAVAVSILVGADFVGCLTGSGS--SAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVG 436 (528)
Q Consensus 359 ~~~~~~~~t~~v~VP~~~~g~IIGkgG--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~ 436 (528)
......++.+|.|+.++|..|||++| ..|++|+++|||+|++++.++... ...+...|+|+|+.++|+.|+.+|.+
T Consensus 180 -~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 180 -PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-TRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp -CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred -cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-ccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 11235789999999999999999999 567999999999999976533110 01245789999999999999999999
Q ss_pred HHh
Q 009695 437 RLR 439 (528)
Q Consensus 437 ~l~ 439 (528)
.|-
T Consensus 258 lLP 260 (376)
T 3n89_A 258 LLP 260 (376)
T ss_dssp TSE
T ss_pred hCC
Confidence 985
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=3.1e-20 Score=188.46 Aligned_cols=296 Identities=10% Similarity=0.091 Sum_probs=184.0
Q ss_pred CCCCCCceEEEEEecccccccccccCc--hHHHHHHhhhCceEEecCCC-----CCCCceEEEEEcCCcchhhhhccccc
Q 009695 18 LNLPDDVVSFRLVCPTPVVGGLIGRSG--SIISSIRRDTKCRIHCEGGF-----PGSDHRVILVVGSGSIDRRIMFCEND 90 (528)
Q Consensus 18 ~~~~~~~~~~rilvp~~~vG~VIGk~G--~~Ik~I~~eTga~I~i~~~~-----~~~~eRvi~I~G~~~~~~~~~~~~~~ 90 (528)
+......+++.+-||..+++.||||+| ++|++|++||||+|+|++.. +......|+|+|..++++
T Consensus 23 le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE-------- 94 (376)
T 3n89_A 23 IEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVD-------- 94 (376)
T ss_dssp CCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHH--------
T ss_pred EEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHH--------
Confidence 344577899999999999999999999 99999999999999998764 113456899999998843
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCC
Q 009695 91 VVVEGGEVSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPAC 170 (528)
Q Consensus 91 ~~~~~~~~s~A~~al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~ 170 (528)
.|.+++.. . .++++.+-+|...++. ...+..|.+ ++.+|++|.+...+..
T Consensus 95 ---------~AR~~I~~-------l-----------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~ 144 (376)
T 3n89_A 95 ---------RARMLMRR-------N-----------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK 144 (376)
T ss_dssp ---------HHHHHHHH-------S-----------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--
T ss_pred ---------HHHHHHHh-------c-----------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc
Confidence 34444332 1 0455555555433222 112345555 5679999998653211
Q ss_pred CCCCCceEEEeccHHHHHHHHHHHHHHHccCCCCCCCCcccCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009695 171 AAIDDQLIQITGATLAVKKALVAVTTCLQHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASE 250 (528)
Q Consensus 171 ~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~y~~~ 250 (528)
.+.....|+|+|...+|.+|+.++..+++..... .
T Consensus 145 ~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~-e-------------------------------------------- 179 (376)
T 3n89_A 145 NGIVTTYLRITAREKNQHELIEAAKRLNEILFRE-S-------------------------------------------- 179 (376)
T ss_dssp ---CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred cCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhh-h--------------------------------------------
Confidence 1112567999999876666555555444331000 0
Q ss_pred CCCCCCCCCCCCCCCCcCCCCcceEEEEEeeccccceeeccCC--chhHhhHhhcCeeEEEeCCCC----CCCccEEEEe
Q 009695 251 FHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRG--AIVRSLQNASGALISFAAPLT----KSGERVVTIS 324 (528)
Q Consensus 251 ~~p~~~~~~~~~~~~~~~~~~~~~~~~l~vP~~~vG~IIGkgG--~~Ik~I~~~tGa~I~i~~~~~----~~~eR~V~I~ 324 (528)
......++..|.|+..++..||||+| ..|+.|+++|||+|+|++... ......|+|+
T Consensus 180 -----------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItIt 242 (376)
T 3n89_A 180 -----------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVV 242 (376)
T ss_dssp -----------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEE
T ss_pred -----------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEE
Confidence 00123567889999999999999999 556999999999999975322 1245789999
Q ss_pred cccccCCCCChHHHHHHHHHhhhhhcccCCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCC
Q 009695 325 ALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404 (528)
Q Consensus 325 G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~ 404 (528)
|++ ..+.+|...|.+. -++...+.++.+..-.-...--..|..++++.++-|.+.+.
T Consensus 243 Gs~------e~V~~Ark~I~~l-----------------LPv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 299 (376)
T 3n89_A 243 GNI------DNVLKARRYIMDL-----------------LPISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPS 299 (376)
T ss_dssp SCH------HHHHHHHHHHHHT-----------------SEEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEE
T ss_pred eCH------HHHHHHHHHHHhh-----------------CCEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeec
Confidence 995 2333444444332 25667777776544333344444566788999999999875
Q ss_pred CCccccCCCC---CcEEEEcC---CHHHHHHHHHHHHH
Q 009695 405 EQVLGCAAQN---DVVIQISG---EYKNVQNALSEVVG 436 (528)
Q Consensus 405 ~~~p~~~~~~---~~~V~ItG---~~~~v~~A~~~I~~ 436 (528)
..-|.--.++ -..|+|++ +..+++.|.+.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~ 337 (376)
T 3n89_A 300 VYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLS 337 (376)
T ss_dssp EECCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBC
T ss_pred CCCchhhcccccccceEEEEEEeccHHHHHHHHHHHhC
Confidence 3322100011 13455554 45566666665543
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=3e-18 Score=153.28 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred ceEEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhccc
Q 009695 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (528)
Q Consensus 273 ~~~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (528)
.++.++.||.+.+|.+||++|++|+.|++++| |++....++ ...+++.|. +|+ ++..+.. +.+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~--~~~~i~~~~-------~p~--~v~~~~~-~l~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED--TCTFHIYGE-------DQD--AVKKARS-FLEF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT--TTEEEEEES-------SHH--HHHHHHH-HHCE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC--chheeeccC-------CHH--HHHHHHH-hhhc--
Confidence 45678999999999999999999999999999 444322111 234555554 222 2222211 1111
Q ss_pred CCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCC-eEEEeCCCCccccCCCCC--cEEEEcCCHHHHHH
Q 009695 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGT-DIKLVGGEQVLGCAAQND--VVIQISGEYKNVQN 429 (528)
Q Consensus 353 ~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~--~~V~ItG~~~~v~~ 429 (528)
...++.||.+++|++|||+|++|+.|++.||+ +|+|.+.++... ..++ ..|+|+|++++|+.
T Consensus 67 -------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 67 -------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp -------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHH
T ss_pred -------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHH
Confidence 13799999999999999999999999999997 999987543111 1223 35899999999999
Q ss_pred HHHHHHHHHhh
Q 009695 430 ALSEVVGRLRH 440 (528)
Q Consensus 430 A~~~I~~~l~~ 440 (528)
|+.+|.++|.+
T Consensus 132 Ak~li~~~l~~ 142 (144)
T 2qnd_A 132 ATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999974
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.72 E-value=7.2e-18 Score=150.85 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=100.1
Q ss_pred ceEEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHH
Q 009695 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (528)
Q Consensus 24 ~~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~ 103 (528)
.++.+++||.+.+|++||++|++|++|++++| |++-+.. +.+++++...+.++.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~----------------------- 56 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDA----------------------- 56 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHH-----------------------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHH-----------------------
Confidence 46789999999999999999999999999999 5543221 234554444333332
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCC-eEEEcCCC-CCCCCCCc--eEE
Q 009695 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGA-KIVMLPPP-ACAAIDDQ--LIQ 179 (528)
Q Consensus 104 al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa-~I~i~~~p-~~~~~~er--~V~ 179 (528)
+.++. .+++. ...++.||..++|++|||+|++|+.|++.||+ +|+|..+. ......++ .|+
T Consensus 57 -v~~~~-~~l~~-------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vt 121 (144)
T 2qnd_A 57 -VKKAR-SFLEF-------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFV 121 (144)
T ss_dssp -HHHHH-HHHCE-------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEE
T ss_pred -HHHHH-Hhhhc-------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEE
Confidence 11211 11111 13789999999999999999999999999997 99998741 11122344 489
Q ss_pred EeccHHHHHHHHHHHHHHHcc
Q 009695 180 ITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 180 I~G~~~~V~kA~~~I~~~l~~ 200 (528)
|+|+.++|++|+.+|.++|..
T Consensus 122 I~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 122 FVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999864
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.63 E-value=5.3e-16 Score=147.50 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=100.1
Q ss_pred EEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHHHH
Q 009695 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAV 105 (528)
Q Consensus 26 ~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~al 105 (528)
..++.||.+++|.|||++|++|++|+++|||+|+|+.. ++.|+|.+..... +...++.|.
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~---------------d~~~i~kA~ 94 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETE---------------DPLAVWKAR 94 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCC---------------SHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCC---------------CHHHHHHHH
Confidence 56899999999999999999999999999999999742 5678998865210 011122232
Q ss_pred HHHHHHHhhhhhccCCCCCCCCceEEE-EEe-----ec------ceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCC
Q 009695 106 IRVFERMWEVEAEVEGDGDGDDVAYCG-LLA-----NT------TKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAI 173 (528)
Q Consensus 106 ~~v~~~i~~~~~~~~~~~~~~~~v~~r-llV-----p~------~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~ 173 (528)
..+..-......+.... -..+...+. +-+ +. ..+|+||||+|++|+.|++.|||+|.|.
T Consensus 95 ~~I~~i~rg~~~e~g~~-ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~-------- 165 (219)
T 2e3u_A 95 DIVLAIGRGFSPERAFR-LLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY-------- 165 (219)
T ss_dssp HHHHHHHTTCCHHHHGG-GGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------
T ss_pred HHHHHHhccCCccccce-eccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------
Confidence 22222111010110000 000112222 222 22 2689999999999999999999999994
Q ss_pred CCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 174 DDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 174 ~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
++.|.|.|+.++++.|..+|.+++.+.
T Consensus 166 -~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 -GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp -TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred -CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 367999999999999999999999664
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.58 E-value=1.9e-15 Score=143.67 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=102.9
Q ss_pred EEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcccCC
Q 009695 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQ 354 (528)
Q Consensus 275 ~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~ 354 (528)
...+.||.+.+|.|||++|++|+.|+++||++|+++. .++.|+|.++....+ ...++.|..++.........+.
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d-~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED-PLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS-HHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC-HHHHHHHHHHHHHHhccCCccc
Confidence 4578999999999999999999999999999999952 357899998741111 1234555555544331100000
Q ss_pred CCCCCCCCCCceEEEEEeC-----------CcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCC
Q 009695 355 GFSSGENKGDAVAVSILVG-----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE 423 (528)
Q Consensus 355 ~~~~~~~~~~~~t~~v~VP-----------~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~ 423 (528)
+... + .+......+.++ ...+|+||||+|.+|+.|++.|||+|.|. ++.|+|.|+
T Consensus 109 g~~l-l-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRL-L-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIGN 174 (219)
T ss_dssp HGGG-G-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEEC
T ss_pred ccee-c-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEeC
Confidence 0000 0 011122223333 23689999999999999999999999995 246999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009695 424 YKNVQNALSEVVGRLRH 440 (528)
Q Consensus 424 ~~~v~~A~~~I~~~l~~ 440 (528)
+++++.|+.+|.+.|..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999964
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1.1e-14 Score=114.55 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=65.2
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
+..++.+|.||.+.+|+|||+||++|++|+++|||+|+|.+. +..++.|+|+|+++++..|+.+|.++|++
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999764 24589999999999999999999999986
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.49 E-value=3.4e-14 Score=114.49 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. | +.+++.|+|+|++++++.|+.+|.+++++.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL--E---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT--S---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCC--C---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999997532 2 456799999999999999999999999863
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.48 E-value=3.3e-14 Score=112.88 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=64.5
Q ss_pred ceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 365 ~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
..+.+|.||.+.+|+|||+||++|++|++.|||+|+|.+.++.. .+..++.|+|+|++++++.|+.+|.++|++
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999998753321 146789999999999999999999998864
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=2.6e-14 Score=112.48 Aligned_cols=69 Identities=30% Similarity=0.478 Sum_probs=65.0
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
.++++|+||.+.+|.||||||++|++|+++|||+|+|.++ +..+|+|+|.|++++|.+|+.+|.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999873 45789999999999999999999999976
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.48 E-value=2.2e-14 Score=113.92 Aligned_cols=72 Identities=19% Similarity=0.396 Sum_probs=65.5
Q ss_pred CceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 364 ~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
..++.+|.||.+++|+|||+||++|++|+++|||+|+|.+.. | +..++.|+|+|++++++.|+.+|.++|++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV--E---GSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCC--C---CCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999997631 2 56789999999999999999999999874
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=3.2e-14 Score=114.67 Aligned_cols=74 Identities=18% Similarity=0.399 Sum_probs=65.8
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
+..++.+|.||.+++|+||||||++|++|+++|||+|+|.+.. | ...++.|+|+|++++++.|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV--E---GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCC--C---CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999997642 2 467899999999999999999999999764
No 23
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=1.3e-13 Score=127.88 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=100.5
Q ss_pred EEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHHHHH
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVI 106 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~al~ 106 (528)
++++||.+.+|.|||++|++++.|++++||+|+++. .++.++|......... ..+..|.+.+.
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp------------~~i~KA~dlI~ 68 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPP------------VNLMKAAEVVK 68 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCH------------HHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCH------------HHHHHHHHHHH
Confidence 699999999999999999999999999999999964 3777888743321000 00222333332
Q ss_pred HHHHHHhhhhhccCCCCCCCCceEEEEE-ee----------cceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCC
Q 009695 107 RVFERMWEVEAEVEGDGDGDDVAYCGLL-AN----------TTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDD 175 (528)
Q Consensus 107 ~v~~~i~~~~~~~~~~~~~~~~v~~rll-Vp----------~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~e 175 (528)
.+.. ....++.. .-.++.+.+... ++ ....|+||||+|.+++.|++.|||+|.|..
T Consensus 69 ai~r---gf~~e~A~-~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~--------- 135 (191)
T 1tua_A 69 AISL---GFPPEKAF-RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE--------- 135 (191)
T ss_dssp HHHH---TCCHHHHG-GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS---------
T ss_pred HHHc---CCCHHHhh-hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC---------
Confidence 2111 00000000 001113344432 33 236899999999999999999999999943
Q ss_pred ceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 176 QLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 176 r~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
+.|.|.|+.++++.|...|.+++...
T Consensus 136 ~~v~i~G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 136 YEVAIIGDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeChHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999653
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=6.1e-14 Score=113.02 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=67.0
Q ss_pred CCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 126 ~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
...++.+|+||.+.+|.||||+|++|++|+++|||+|+|.+. +++..++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 347899999999999999999999999999999999999873 45678999999999999999999999999775
No 25
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.2e-14 Score=113.17 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=63.5
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHh
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLR 439 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~ 439 (528)
.....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++++.|+++|.+++.
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999997532 36789999999999999999999876
No 26
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=1.6e-13 Score=112.93 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=67.0
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ...++.|+|+|++++|+.|+.+|.++|++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999986432 356899999999999999999999999864
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=8.4e-14 Score=110.52 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=66.6
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
.++.+|+||.+.+|.||||||++|++|+++|||+|+|.. .+++..++.|+|.|++++|.+|+.+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--PVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999987 35677899999999999999999999999865
No 28
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.44 E-value=1.4e-13 Score=110.76 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=66.7
Q ss_pred CceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 127 ~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999987 34567889999999999999999999999976
No 29
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.44 E-value=1.3e-13 Score=109.45 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=65.5
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~-p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
.++++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ..+++..++.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999885 234567889999999999999999999998854
No 30
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=8.9e-14 Score=113.35 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.0
Q ss_pred eEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhhc
Q 009695 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (528)
Q Consensus 366 ~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~~ 442 (528)
.+.+|.||.+.+|+|||+||++|++|+++|||+|+|.+.++.. .+..++.|+|+|++++++.|+.+|.++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999998753321 14678999999999999999999999998643
No 31
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.43 E-value=8.7e-14 Score=113.85 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=66.9
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. | +.+++.|+|+|+++++++|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL--E---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC--S---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCC--C---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999999997532 2 467899999999999999999999999864
No 32
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=108.46 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=65.5
Q ss_pred CceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 364 ~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
...+.+|.||.+.+|+||||||++|++|+++|||+|+|.+....+ ...++.|+|+|++++++.|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 467889999999999999999999999999999999998743322 46788999999999999999999998863
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.40 E-value=2.1e-13 Score=111.58 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=67.9
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
+...++.+|+||.+.+|.||||+|++|++|+++|||+|+|.. .++...++.|+|+|++++|.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 345889999999999999999999999999999999999987 34567899999999999999999999999976
No 34
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=114.56 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=64.4
Q ss_pred EEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 367 t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... |. .+..++.|+|+|++++|++|+.+|.++|.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-PN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-TT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-CC-CCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999986532 21 2356799999999999999999999999764
No 35
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.39 E-value=7.2e-13 Score=107.43 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=67.3
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
+....+.+|.||.+.+|.||||+|++|++|+++|||+|.|..+.......+|.|.|+|+++++.+|+.+|.+++.+
T Consensus 10 g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 10 GQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999999999999999885223457899999999999999999999998854
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=4.4e-13 Score=110.76 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+....+ ...++.|+|+|++++++.|+.+|.++|++
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999998653211 34689999999999999999999999976
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=3.2e-13 Score=110.00 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=66.7
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~-p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
.++++|+||.+.+|+||||+|++|++|+++|||+|+|.++ ...++..++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999875 2345678899999999999999999999999763
No 38
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=112.94 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=63.8
Q ss_pred ceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 365 ~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
..+.+|.||.+.+|+||||+|++|++|+++|||+|+|.+.+. ...++.|+|+|+++++++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999976432 456889999999999999999999999863
No 39
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.37 E-value=3.6e-13 Score=124.86 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=101.5
Q ss_pred EEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcccCCC
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQG 355 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~~ 355 (528)
+++.||.+.+|.|||++|++++.|++.+|++|+++ ..++.++|.-+..-.+ ....+.|...+.........+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~d-p~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIP-PVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSC-HHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCC-HHHHHHHHHHHHHHHcCCCHHHh
Confidence 57899999999999999999999999999999995 3477888874421111 12345555555332211100000
Q ss_pred CCCCCCCCCceEEEEEeC----------CcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHH
Q 009695 356 FSSGENKGDAVAVSILVG----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYK 425 (528)
Q Consensus 356 ~~~~~~~~~~~t~~v~VP----------~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~ 425 (528)
. .+-.+...-..+.++ ....|+|||++|.+|+.|+..|||+|.|. +..|.|.|+++
T Consensus 80 ~--~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~v~i~G~~~ 145 (191)
T 1tua_A 80 F--RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYEVAIIGDYE 145 (191)
T ss_dssp G--GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSEEEEEEEHH
T ss_pred h--hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCEEEEEeChH
Confidence 0 000122222334444 24689999999999999999999999884 23799999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009695 426 NVQNALSEVVGRLRH 440 (528)
Q Consensus 426 ~v~~A~~~I~~~l~~ 440 (528)
+++.|...|...|..
T Consensus 146 ~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 RAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999863
No 40
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=1.1e-12 Score=110.55 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=67.9
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
...+.+.+|.||.+.+|+||||||++|++|+++|||+|+|.+... + ...+++.|+|+|++++++.|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 456789999999999999999999999999999999999986432 1 1235899999999999999999999999765
Q ss_pred c
Q 009695 442 L 442 (528)
Q Consensus 442 ~ 442 (528)
+
T Consensus 88 ~ 88 (104)
T 1we8_A 88 E 88 (104)
T ss_dssp H
T ss_pred h
Confidence 4
No 41
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.36 E-value=6.3e-13 Score=109.40 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=67.5
Q ss_pred CCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 126 ~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
...++.+|+||.+.+|.||||+|++|++|+++|||+|+|..+ ..+..+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~--~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD--SGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSC--CTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCC--CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999999884 23567899999999999999999999999774
No 42
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.35 E-value=6.5e-13 Score=109.78 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
....++.+|+||.+.+|+||||+|++|++|+++|||+|+|.++.......+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 44578999999999999999999999999999999999998852212457899999999999999999999999763
No 43
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=112.34 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=64.8
Q ss_pred EEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 130 ~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~-p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
+++|+||.+++|+||||+|++||+|+++|||+|+|.++ .......++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999885 2223457899999999999999999999999764
No 44
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.3e-12 Score=107.96 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=68.0
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
.+..++.+|.||.+++|.|||+||++|++|+++|||+|+|++.. ..+++.|+|+|++++++.|+.+|...++++
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999997542 234679999999999999999999999886
Q ss_pred cCC
Q 009695 442 LKS 444 (528)
Q Consensus 442 ~~~ 444 (528)
...
T Consensus 87 ~~~ 89 (95)
T 2ctm_A 87 LAD 89 (95)
T ss_dssp HTS
T ss_pred HHH
Confidence 553
No 45
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=7.9e-13 Score=106.26 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=63.9
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
....++.+|.||.+.+|+||||+|++||+|+++|||+|+|.+. .++++++|+|++++|++|+.+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-----~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-----DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-----SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-----CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999999999762 2478999999999999999999998754
No 46
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=1.5e-12 Score=107.60 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
...++.+|.||.+.+|.|||+||.+|++|+++|||+|+|++.+ +.+..|+|+|++++++.|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999999999999999999997532 23578999999999999999999999864
No 47
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.9e-12 Score=106.32 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=64.9
Q ss_pred CceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 364 ~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
...+.+|.||++++|.|||+||++|++|+++|||+|+|++..+ | ...++.|+|+|++++++.|+.+|...+++
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999987543 2 24678999999999999999999998875
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.31 E-value=1.7e-12 Score=101.37 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=60.7
Q ss_pred CceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 009695 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRL 438 (528)
Q Consensus 364 ~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l 438 (528)
...+.+|.||.+++|.|||+||++|++|+++|||+|+|++.. +.++.|+|+|++++++.|+.+|.+.+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999999997642 35689999999999999999998753
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.29 E-value=3.3e-12 Score=107.59 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=66.7
Q ss_pred CceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccCC
Q 009695 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHLS 202 (528)
Q Consensus 127 ~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~~ 202 (528)
.+++.+|+||.+.+|.||||+|++|++|+++|||+|+|.+........++.|+|+|..++|.+|+.+|.+++.+.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 4788999999999999999999999999999999999987411112468999999999999999999999997653
No 50
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=108.43 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=64.0
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
..+++|+||.+.++.||||+|++||+|+++|||+|+|.++ .....+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~--~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSS--CSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3467999999999999999999999999999999999874 23557899999999999999999999999763
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=7.9e-12 Score=105.02 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=63.8
Q ss_pred CceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 364 ~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
.+.+.+|.||.+++|.|||+||++|++|+++|||+|+|++.. ...+.|+|+|+.++++.|+.+|..++++.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 468999999999999999999999999999999999997642 23468999999999999999999998764
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.22 E-value=9.6e-12 Score=97.10 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.8
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHH
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l 198 (528)
..+..|.||...+|.|||+||++|++|+++|||+|+|..+ +..++.|+|+|..+++.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD----SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC----CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC----CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999774 236789999999999999999998764
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=2.4e-11 Score=100.27 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCCCceEEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcc
Q 009695 10 YSSKRRGPLNLPDDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSI 80 (528)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~ 80 (528)
.+..++.-+...+..++.+|.||.+++|.|||++|++|++|+++|||+|+|++. +.+++.|+|+|+.++
T Consensus 2 ~~~A~~~iv~~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~e~ 70 (94)
T 2cte_A 2 SSGSSGDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTKEG 70 (94)
T ss_dssp CSCCCCCCCCCCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECHHH
T ss_pred chHHHHHHHHHhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECHHH
Confidence 455566666677888999999999999999999999999999999999999864 334688999998655
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=2.6e-11 Score=100.59 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
..++.|.||...++.||||||++|++|+++|||+|+|.++ ..+...++.|+|+|..+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~-g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK-DDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT-TTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCC-CCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999874 22334778999999999999999999998865
No 55
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=3.4e-11 Score=99.43 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=65.0
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
.+..++..|.||..+++.|||++|++|++|+++|||+|+|..+ ...+++.|+|+|..++|.+|+.+|..++.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~---g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS---GAPDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT---TCSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999763 123578999999999999999999998876
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=6.1e-11 Score=97.73 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhh-CCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVT-GTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
.++.++.+|.||.++|+.|||+||.+|++|+++| ||+|+|++. ++....|+|+|+.+++++|+.+|.+.+.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3577899999999999999999999999999999 999999753 24466899999999999999999999976
Q ss_pred h
Q 009695 441 N 441 (528)
Q Consensus 441 ~ 441 (528)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 57
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.1e-10 Score=98.11 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=62.6
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
+++..|.||...+|.|||+||++|++|+++|||+|+|..+ +...+.|+|+|..++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~----g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP----ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT----TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999999999773 22456999999999999999999998865
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=2.2e-10 Score=95.76 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=60.6
Q ss_pred ceEEEEEeCCcceeeeecCCCchhHHHHHh-hCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 365 AVAVSILVGADFVGCLTGSGSSAVSEMEDV-TGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 365 ~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
.++.+|.||+++|++|||++|++|++|+++ ++++|+|++ ++..|+|+|++++|.+|+.+|...+++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999996 599999864 2468999999999999999999998764
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=3.5e-10 Score=94.51 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=61.0
Q ss_pred ceEEEEEeecceeeEEecCCChHHHHHHhh-hCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHccC
Q 009695 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIE-SGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (528)
Q Consensus 128 ~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~-tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~~ 201 (528)
.++.+|.||..+++.|||++|++|++|+++ ++++|.++. .++.|+|+|+.+.|.+|..+|..++++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999998 599999855 4679999999999999999999988763
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=6.4e-10 Score=91.59 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCCceEEEEEeecceeeEEecCCChHHHHHHhhh-CCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHcc
Q 009695 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIES-GAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (528)
Q Consensus 125 ~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~t-Ga~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~~ 200 (528)
.+..++..|.||..+++.|||+||++|++|+++| ||+|.|..+ +...+.|+|.|..++|.+|+.+|.+++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE----GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT----TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999 999999763 44567899999999999999999999876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=1.2e-09 Score=88.40 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=62.5
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCe-EEEeCCCCccccCCCCCcEEEEcC-CHHHHHHHHHHHHHHHhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTD-IKLVGGEQVLGCAAQNDVVIQISG-EYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~~~V~ItG-~~~~v~~A~~~I~~~l~~ 440 (528)
...+..+|.||.+.+|.+||+||.+|++|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|...-..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 467899999999999999999999999999999998 99942 357899999 899999999999876554
Q ss_pred hcCCC
Q 009695 441 NLKSG 445 (528)
Q Consensus 441 ~~~~~ 445 (528)
+....
T Consensus 82 ~~vp~ 86 (91)
T 2cpq_A 82 IQVPS 86 (91)
T ss_dssp CCCCS
T ss_pred EecCh
Confidence 44333
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=3.3e-08 Score=79.96 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCceEEEEEeecceeeEEecCCChHHHHHHhhhCCe-EEEcCCCCCCCCCCceEEEec-cHHHHHHHHHHHHHH
Q 009695 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAK-IVMLPPPACAAIDDQLIQITG-ATLAVKKALVAVTTC 197 (528)
Q Consensus 126 ~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~-I~i~~~p~~~~~~er~V~I~G-~~~~V~kA~~~I~~~ 197 (528)
...+...+.||...+|.+||+||++|++|+++||++ |.|.. ++..|.|.| +.+++.+|+.+|..+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 447888999999999999999999999999999998 99964 468999999 799999999988543
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=3e-07 Score=80.04 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=62.7
Q ss_pred CceEEEEEeCCc------ceeeeecCCCchhHHHHHhhCCeEEEeCCCCcc-----------ccCCCCCcEEEEcC-CHH
Q 009695 364 DAVAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVL-----------GCAAQNDVVIQISG-EYK 425 (528)
Q Consensus 364 ~~~t~~v~VP~~------~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p-----------~~~~~~~~~V~ItG-~~~ 425 (528)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... .....++-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 889999999999999999999999997743211 00123466888999 578
Q ss_pred HHHHHHHHHHHHHhh
Q 009695 426 NVQNALSEVVGRLRH 440 (528)
Q Consensus 426 ~v~~A~~~I~~~l~~ 440 (528)
.+++|+.+|...|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=3.2e-07 Score=79.90 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=61.2
Q ss_pred ceEEEEEeecc------eeeEEecCCChHHHHHHhhhCCeEEEcCC-C-------------CCCCCCCceEEEecc-HHH
Q 009695 128 VAYCGLLANTT------KIGVVVGKGGRNVTRMRIESGAKIVMLPP-P-------------ACAAIDDQLIQITGA-TLA 186 (528)
Q Consensus 128 ~v~~rllVp~~------~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~-p-------------~~~~~~er~V~I~G~-~~~ 186 (528)
.++.++.||-. .+|.|||++|++||+|+++|||+|.|... . ......+-.|.|++. .++
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 67889999988 78899999999999999999999999763 0 001123668889996 999
Q ss_pred HHHHHHHHHHHHcc
Q 009695 187 VKKALVAVTTCLQH 200 (528)
Q Consensus 187 V~kA~~~I~~~l~~ 200 (528)
+.+|+.+|.++|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=8e-07 Score=75.82 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=58.6
Q ss_pred CceEEEEEeCCc-------ceeeeecCCCchhHHHHHhhCCeEEEeCCCCc---c--ccCCCCCcEEEEc-CCHHHHHHH
Q 009695 364 DAVAVSILVGAD-------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV---L--GCAAQNDVVIQIS-GEYKNVQNA 430 (528)
Q Consensus 364 ~~~t~~v~VP~~-------~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---p--~~~~~~~~~V~It-G~~~~v~~A 430 (528)
...+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... + .....++-.|.|+ .+++++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357788888865 78999999999999999999999999754220 0 0001234467777 568899999
Q ss_pred HHHHHHHHhh
Q 009695 431 LSEVVGRLRH 440 (528)
Q Consensus 431 ~~~I~~~l~~ 440 (528)
+.+|..+|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999974
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=5.7e-07 Score=76.72 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=57.9
Q ss_pred ceEEEEEeecc-------eeeEEecCCChHHHHHHhhhCCeEEEcCCC--------CCCCCCCceEEEecc-HHHHHHHH
Q 009695 128 VAYCGLLANTT-------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------ACAAIDDQLIQITGA-TLAVKKAL 191 (528)
Q Consensus 128 ~v~~rllVp~~-------~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p--------~~~~~~er~V~I~G~-~~~V~kA~ 191 (528)
.++.+|.||-. .+|.|||++|++||+|+++|||+|.|..+. ......+-.|.|.+. .+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 57778888865 789999999999999999999999997430 001123446778765 99999999
Q ss_pred HHHHHHHcc
Q 009695 192 VAVTTCLQH 200 (528)
Q Consensus 192 ~~I~~~l~~ 200 (528)
.+|.++|.+
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999865
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.02 E-value=4.7e-06 Score=72.89 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=55.8
Q ss_pred eEEEEEeecce------eeEEecCCChHHHHHHhhhCCeEEEcCCCCC----------------CCCCCceEEEecc-HH
Q 009695 129 AYCGLLANTTK------IGVVVGKGGRNVTRMRIESGAKIVMLPPPAC----------------AAIDDQLIQITGA-TL 185 (528)
Q Consensus 129 v~~rllVp~~~------vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~----------------~~~~er~V~I~G~-~~ 185 (528)
++.++.||-+. +|.|||++|.++|+|+++|||+|.|..+... ....+=-|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788888765 8999999999999999999999999975110 0112226778885 33
Q ss_pred -----HHHHHHHHHHHHHcc
Q 009695 186 -----AVKKALVAVTTCLQH 200 (528)
Q Consensus 186 -----~V~kA~~~I~~~l~~ 200 (528)
.+.+|+.+|.++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999998864
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.87 E-value=8e-06 Score=71.41 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=55.6
Q ss_pred eEEEEEeCC------cceeeeecCCCchhHHHHHhhCCeEEEeCCCCc------------ccc-CCCCCcEEEEcCC-HH
Q 009695 366 VAVSILVGA------DFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV------------LGC-AAQNDVVIQISGE-YK 425 (528)
Q Consensus 366 ~t~~v~VP~------~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~------------p~~-~~~~~~~V~ItG~-~~ 425 (528)
++.+|.||- +++|.|||++|.++|+|+++|||+|.|-.+... |+. ..++.--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 466788885 449999999999999999999999999876531 100 0122337778884 33
Q ss_pred -----HHHHHHHHHHHHHh
Q 009695 426 -----NVQNALSEVVGRLR 439 (528)
Q Consensus 426 -----~v~~A~~~I~~~l~ 439 (528)
.++.|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999999886
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.82 E-value=1.5e-05 Score=86.79 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCce
Q 009695 98 VSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQL 177 (528)
Q Consensus 98 ~s~A~~al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~ 177 (528)
+..|.++...+++.+.+...+.........+....+-||.+.+|.|||+||++||+|+++|||+|.|.. +..
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------~G~ 607 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------EET 607 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS--------SSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC--------CcE
Confidence 445666777766665554332211112233667889999999999999999999999999999999954 478
Q ss_pred EEEecc-HHHHHHHHHHHHHHH
Q 009695 178 IQITGA-TLAVKKALVAVTTCL 198 (528)
Q Consensus 178 V~I~G~-~~~V~kA~~~I~~~l 198 (528)
|.|.|. .+++.+|+.+|..++
T Consensus 608 V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 608 FSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEeCCHHHHHHHHHHHHHHh
Confidence 999987 688999999987654
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.80 E-value=1.6e-05 Score=86.50 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCC
Q 009695 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (528)
Q Consensus 336 a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~ 415 (528)
|.++...+++.+.+..-... ...+...+....+.||.+.+|.|||+||.+||+|+++|||+|.|. ++
T Consensus 539 A~~g~~~I~~~m~~al~~~~--~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~ 605 (630)
T 3u1k_A 539 ASVAKKEILQIMNKTISKPR--ASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DE 605 (630)
T ss_dssp HHHHHHHHHHHHHHHCSSCC--SSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SS
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CC
Confidence 34455555555544321111 112234577899999999999999999999999999999999884 24
Q ss_pred cEEEEcCC-HHHHHHHHHHHHHHH
Q 009695 416 VVIQISGE-YKNVQNALSEVVGRL 438 (528)
Q Consensus 416 ~~V~ItG~-~~~v~~A~~~I~~~l 438 (528)
..|+|.|+ .+..++|+.+|..++
T Consensus 606 G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SEEEEEESSHHHHHHHHHHTTC--
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 67999987 578999999987654
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.70 E-value=5.9e-05 Score=64.59 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=60.6
Q ss_pred EEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhhh
Q 009695 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 368 ~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~~ 441 (528)
.-+.|.++.++.|+|++|+.|++|+..|+|.|++..-+. ++...|+|.|++..-..|+.+|......+
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999987532 46788999999999999999999887644
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.63 E-value=2.7e-05 Score=68.52 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=72.1
Q ss_pred eEEEEEecccccccccccCchHHHHHHhhhCceEEecCCCCCCCceEEEEEcCCcc-hhhhhcccccccccCCCcchHHH
Q 009695 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQE 103 (528)
Q Consensus 25 ~~~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~i~~~~~~~~eRvi~I~G~~~~-~~~~~~~~~~~~~~~~~~s~A~~ 103 (528)
-.+.++|+...+|+.||++|+.|+.|+++.|-+|+|-+...+ ++. +.++ ++||.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~~fI~na-------------LsPA~- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LERIVKNL-------------FPGVK- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HHHHHHHH-------------STTSC-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HHHHHHHh-------------cCCce-
Confidence 457789999999999999999999999999999998543111 000 0000 11110
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEc
Q 009695 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVML 165 (528)
Q Consensus 104 al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~ 165 (528)
+....... .++...+.+.||..+.+..|||+|.+++-..+-||.+|.|.
T Consensus 91 --------V~~V~i~~-----~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 91 --------IESINVRE-----RNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp --------EEEEEEEE-----ETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred --------EEEEEEee-----cCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000000 02256788999999999999999999999999999888774
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.19 E-value=0.0002 Score=78.88 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCC
Q 009695 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (528)
Q Consensus 336 a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~ 415 (528)
|.++...++..+.+..-. .. ...+...+....+.||.+.++.|||+||.+||+|.++||++|.|.. +
T Consensus 542 A~~g~~~I~~~m~~al~~-~r-~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----------d 608 (726)
T 4aid_A 542 AKEGRAHILGEMNKAMDA-PR-ADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----------D 608 (726)
T ss_dssp HHHHHHHHHHHHHTTCSS-CC-SSCCSSCCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHh-hh-hhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------C
Confidence 344555565555443211 11 1122345667899999999999999999999999999999998842 3
Q ss_pred cEEEEcCC-HHHHHHHHHHHHHHHhhhcCC
Q 009695 416 VVIQISGE-YKNVQNALSEVVGRLRHNLKS 444 (528)
Q Consensus 416 ~~V~ItG~-~~~v~~A~~~I~~~l~~~~~~ 444 (528)
..|.|.+. .++.+.|+.+|...+.+...-
T Consensus 609 G~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 609 GVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp -----CCSCHHHHHHHHHC-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 45677666 789999999999988755433
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.10 E-value=0.00065 Score=58.19 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=58.2
Q ss_pred EEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHc
Q 009695 131 CGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQ 199 (528)
Q Consensus 131 ~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~V~I~G~~~~V~kA~~~I~~~l~ 199 (528)
+.+.+.+.+++.|+|++|+.|+.|+..|++.|++..- ..++.--|+|.|++..=.+|+.+|..+..
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~---~s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW---GPERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC---CTTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc---CCCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999873 23467789999999999999999987764
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.06 E-value=0.00025 Score=78.14 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCce
Q 009695 98 VSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQL 177 (528)
Q Consensus 98 ~s~A~~al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~ 177 (528)
+..|.++...+++.+.+...+.........+....+-||.+.++.|||+||++||+|.++||++|.|.. +..
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------dG~ 610 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------DGV 610 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC--------Cce
Confidence 445666666666665544322211111223456678899999999999999999999999999999854 466
Q ss_pred EEEecc-HHHHHHHHHHHHHHHcc
Q 009695 178 IQITGA-TLAVKKALVAVTTCLQH 200 (528)
Q Consensus 178 V~I~G~-~~~V~kA~~~I~~~l~~ 200 (528)
|.|.+. .+++.+|+.+|..++.+
T Consensus 611 v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 611 VKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ---CCSCHHHHHHHHHC-------
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 777776 88999999999888754
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.05 E-value=0.00019 Score=63.09 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=71.1
Q ss_pred EEEEEeeccccceeeccCCchhHhhHhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHH--hhhhhccc
Q 009695 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEG 352 (528)
Q Consensus 275 ~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~--~~i~e~~~ 352 (528)
.+.+.|+...+|..||++|++|+.|+++.|-+|.+-.-.++ +. +-+...+ .++....+
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------------~~-~fI~naLsPA~V~~V~i 96 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------------LE-RIVKNLFPGVKIESINV 96 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------------HH-HHHHHHSTTSCEEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------------HH-HHHHHhcCCceEEEEEE
Confidence 45588999999999999999999999999999987432111 11 0110000 00100000
Q ss_pred CCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEe
Q 009695 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLV 402 (528)
Q Consensus 353 ~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~ 402 (528)
. ..+....+.+.||.++.+..|||+|++++-..+-||.+|.|.
T Consensus 97 ~-------~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 97 R-------ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp E-------EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred e-------ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 003456789999999999999999999999999999988774
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.14 E-value=0.0028 Score=60.56 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=63.3
Q ss_pred cccccccccCchHHHHH-HhhhCceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHHHHHHHHHHH
Q 009695 34 PVVGGLIGRSGSIISSI-RRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERM 112 (528)
Q Consensus 34 ~~vG~VIGk~G~~Ik~I-~~eTga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~al~~v~~~i 112 (528)
+-+|+-||++|++|+.| ++-.|=+|+|-....+ ++ .-+.++ ++||. +
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-p~---------~fi~na-------------lsPA~---------V 173 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-PA---------RFVANA-------------LSPAK---------V 173 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-HH---------HHHHHH-------------TTTSC---------C
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-HH---------HHHHhc-------------cCCcc---------e
Confidence 45899999999999999 6666888887443111 00 000000 11110 0
Q ss_pred hhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC
Q 009695 113 WEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~ 167 (528)
......+ .....+.+.||..+.+.-|||+|.+++--..-||.+|.|...
T Consensus 174 ~~V~i~~------~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 174 VSVSVID------QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp SEEEEEE------TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred EEEEEEc------CCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 0000000 012467899999999999999999999999999999999774
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.01 E-value=0.0035 Score=63.25 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=64.8
Q ss_pred cccccccccCchHHHHHHhhh-CceEEecCCCCCCCceEEEEEcCCcchhhhhcccccccccCCCcchHHHHHHHHHHHH
Q 009695 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERM 112 (528)
Q Consensus 34 ~~vG~VIGk~G~~Ik~I~~eT-ga~I~i~~~~~~~~eRvi~I~G~~~~~~~~~~~~~~~~~~~~~~s~A~~al~~v~~~i 112 (528)
+-+|+.||++|++|+.|.++. |=+|+|-....+ + ++ -+...+
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p----------------------~~----fi~nal 291 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------P----------------------AR----FVANAL 291 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------H----------------------HH----HHHHHT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------H----------------------HH----HHHHhc
Confidence 568999999999999999999 888887442111 0 00 000001
Q ss_pred hhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCC
Q 009695 113 WEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (528)
Q Consensus 113 ~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~ 167 (528)
.......-. ........+.+.||..+.+..|||+|.+++-...-||.+|.|..+
T Consensus 292 sPA~V~~V~-~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 292 SPAKVVSVS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTSCCSEEE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcceeEEE-EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 000000000 000114468899999999999999999999999999999999774
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.37 E-value=0.0073 Score=57.63 Aligned_cols=98 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred cccceeeccCCchhHhh-HhhcCeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcccCCCCCCCCC
Q 009695 283 WTASGIIGKRGAIVRSL-QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGEN 361 (528)
Q Consensus 283 ~~vG~IIGkgG~~Ik~I-~~~tGa~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~~~~~~~~ 361 (528)
+-+|.-||++|++|+.| ++..|=+|.|-.-.++ ++ ..+.+-+...... .-...
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~----~fi~nalsPA~V~---~V~i~ 179 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA----RFVANALSPAKVV---SVSVI 179 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH----HHHHHHTTTSCCS---EEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------------HH----HHHHhccCCcceE---EEEEE
Confidence 56899999999999999 7777888887432111 11 1111111000000 00000
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCC
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~ 406 (528)
.+...++.+.||.++.+.-|||+|++++--.+-||.+|.|....+
T Consensus 180 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 180 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 012357899999999999999999999999999999999976544
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.73 E-value=0.014 Score=58.89 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=66.0
Q ss_pred cccceeeccCCchhHhhHhhc-CeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhhhhcccCCCCCCCCC
Q 009695 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGEN 361 (528)
Q Consensus 283 ~~vG~IIGkgG~~Ik~I~~~t-Ga~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i~e~~~~~~~~~~~~ 361 (528)
+-+|..||++|++|+.|.++. |=+|.|-.- +++ ++ ..+.+-+...... .-...
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-------------s~d------p~----~fi~nalsPA~V~---~V~~~ 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-------------DDD------PA----RFVANALSPAKVV---SVSVI 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-------------CSS------HH----HHHHHHTTTSCCS---EEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-------------CCC------HH----HHHHHhcCCccee---EEEEE
Confidence 578999999999999999998 777877432 111 11 1111111000000 00000
Q ss_pred CCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCC
Q 009695 362 KGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (528)
Q Consensus 362 ~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~ 406 (528)
.+...++.+.||.++.+..|||+|++++-..+-||.+|.|....+
T Consensus 303 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 303 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 012457899999999999999999999999999999999976543
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.56 E-value=0.021 Score=57.38 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=63.0
Q ss_pred cccccccccCchHHHHHHhhh-CceEEecCCCCCCCceEEEEEcCCcc-hhhhhcccccccccCCCcchHHHHHHHHHHH
Q 009695 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQEAVIRVFER 111 (528)
Q Consensus 34 ~~vG~VIGk~G~~Ik~I~~eT-ga~I~i~~~~~~~~eRvi~I~G~~~~-~~~~~~~~~~~~~~~~~~s~A~~al~~v~~~ 111 (528)
+-+|+.||.+|+.|+.+.++. |=+|+|-....+ +.. +.++ ++|| +
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~~~fi~na-------------l~Pa---------~ 291 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------PKQLIANA-------------LAPA---------T 291 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------HHHHHHHH-------------TCSS---------C
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------HHHHHHHh-------------cCcc---------E
Confidence 468999999999999999998 677776432110 000 0000 1110 0
Q ss_pred HhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcC
Q 009695 112 MWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLP 166 (528)
Q Consensus 112 i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~ 166 (528)
+......+ +....+.+.||..+.+.-|||+|.+++--..-||.+|.|..
T Consensus 292 v~~v~~~d------~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 292 VIEVEILD------KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp CSEEEEEE------TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEEc------CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 00000000 11456889999999999999999999999999999999965
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.40 E-value=0.012 Score=64.98 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCce
Q 009695 98 VSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQL 177 (528)
Q Consensus 98 ~s~A~~al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~ 177 (528)
+..|.++...+++.+.+...+.........+....+-+|.+.++.+||+||.+|+.|.+++|+.|.|.. +..
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------dg~ 600 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------DGT 600 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC--------Ccc
Confidence 344566666666655543322211111222455678889999999999999999999999999998843 456
Q ss_pred EEEecc-HHHHHHHHHHHHHHHc
Q 009695 178 IQITGA-TLAVKKALVAVTTCLQ 199 (528)
Q Consensus 178 V~I~G~-~~~V~kA~~~I~~~l~ 199 (528)
+.|.+. .+.+.+|..+|..++.
T Consensus 601 v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 601 VKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -----------------------
T ss_pred EEEecCCHHHHHHHHHHHHHHhh
Confidence 667665 6777888777766553
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.06 E-value=0.016 Score=64.05 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHHhhh
Q 009695 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRLRHN 441 (528)
Q Consensus 363 ~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~-~~~v~~A~~~I~~~l~~~ 441 (528)
..+....+.||.+.++.+||+||.+|++|.++||+.|.|.. +..|.|.+. .+.+++|..+|...+.+.
T Consensus 557 ~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 557 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 45677899999999999999999999999999999997742 345666654 557788888877766543
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.67 E-value=0.0098 Score=66.03 Aligned_cols=89 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCC
Q 009695 336 VQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQND 415 (528)
Q Consensus 336 a~~A~~~i~~~i~e~~~~~~~~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~ 415 (528)
|.++...+++.+.+..-.. .......+....+.||.+.+|.+||++|.+||+|.+.||+.|.|.. +
T Consensus 571 A~~~~~~I~~~m~~al~~~---~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------d 636 (757)
T 1e3p_A 571 ARDARLHILDVMMEAIDTP---DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------D 636 (757)
T ss_dssp HHHHHHHHHHHHHHHCSSC---CCCCTTSCBCCCC------------------CTTCCCCCSCC----------------
T ss_pred HHHHHHHHHHHHHHHhccc---ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------C
Confidence 3445555555554432221 1122344566688999999999999999999999999999998842 3
Q ss_pred cEEEEcCC-HHHHHHHHHHHHHHH
Q 009695 416 VVIQISGE-YKNVQNALSEVVGRL 438 (528)
Q Consensus 416 ~~V~ItG~-~~~v~~A~~~I~~~l 438 (528)
..|.|++. .+..+.|+.+|....
T Consensus 637 G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 637 GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ---CCCBSSHHHHCC---------
T ss_pred ceEEEecCCHHHHHHHHHHHHHhc
Confidence 45666654 456677776766654
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.06 E-value=0.011 Score=65.76 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeEEecCCChHHHHHHhhhCCeEEEcCCCCCCCCCCce
Q 009695 98 VSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQL 177 (528)
Q Consensus 98 ~s~A~~al~~v~~~i~~~~~~~~~~~~~~~~v~~rllVp~~~vG~IIGkgG~~Ik~I~~~tGa~I~i~~~p~~~~~~er~ 177 (528)
+..|.++...+++.+.+...+. .......+....+-||...+|.+||++|++|+.|.+++|+.|.|.. +..
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------dG~ 638 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------DGT 638 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC--------Cce
Confidence 4456666666666655443322 2111122444467799999999999999999999999999998843 456
Q ss_pred EEEecc-HHHHHHHHHHHHHHH
Q 009695 178 IQITGA-TLAVKKALVAVTTCL 198 (528)
Q Consensus 178 V~I~G~-~~~V~kA~~~I~~~l 198 (528)
|.|.+. .+...+|..+|..+.
T Consensus 639 v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 639 IYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -CCCBSSHHHHCC---------
T ss_pred EEEecCCHHHHHHHHHHHHHhc
Confidence 777665 677777766665543
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.51 E-value=0.067 Score=53.67 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=63.8
Q ss_pred cccceeeccCCchhHhhHhhc-CeeEEEeCCCCCCCccEEEEecccccCCCCChHHHHHHHHHhhh-----hhcccCCCC
Q 009695 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARS-----VEVEGQQGF 356 (528)
Q Consensus 283 ~~vG~IIGkgG~~Ik~I~~~t-Ga~I~i~~~~~~~~eR~V~I~G~e~p~~~~~~a~~A~~~i~~~i-----~e~~~~~~~ 356 (528)
+-+|..||.+|.+|+.+.++. |-+|.+-.-. + .++ ..+.+-+ .+..+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s-------------~------d~~----~fi~nal~Pa~v~~v~~---- 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS-------------D------DPK----QLIANALAPATVIEVEI---- 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC-------------S------SHH----HHHHHHTCSSCCSEEEE----
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC-------------C------CHH----HHHHHhcCccEEEEEEE----
Confidence 567999999999999999888 6666663221 1 111 1111111 00000
Q ss_pred CCCCCCCCceEEEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCC
Q 009695 357 SSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404 (528)
Q Consensus 357 ~~~~~~~~~~t~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~ 404 (528)
..+...++.+.||.++.+.-|||+|++++--.+-||.+|.|...
T Consensus 298 ----~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 ----LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp ----EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred ----EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 01234578999999999999999999999999999999998643
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=73.06 E-value=1.6 Score=34.92 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=24.5
Q ss_pred EEEEEecccccccccccCchHHHHHHhhh
Q 009695 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (528)
Q Consensus 26 ~~rilvp~~~vG~VIGk~G~~Ik~I~~eT 54 (528)
..+|.+...+-|.|||++|..|++|+++-
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 35677888999999999999999987753
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=70.88 E-value=2.3 Score=37.35 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=25.0
Q ss_pred EEEEecccccccccccCchHHHHHHhhhCc
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKC 56 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eTga 56 (528)
+.+-+..+..|.+|||.|.+++.||--+..
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~~~ 64 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLLFN 64 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHHHH
Confidence 445557889999999999999999988743
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=59.24 E-value=4 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.4
Q ss_pred EEEEEeeccccceeeccCCchhHhhHhhcCe
Q 009695 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGA 305 (528)
Q Consensus 275 ~~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa 305 (528)
++.+-+..+-.|.+|||.|.|++.||--+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~ 64 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFN 64 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHH
Confidence 3456677889999999999999999877643
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=53.87 E-value=4.3 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEeeccccceeeccCCchhHhhHhh
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNA 302 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~ 302 (528)
+++.|-...-|.|||++|..|++|+.+
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 446667778899999999999887654
No 91
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=42.38 E-value=10 Score=35.66 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=24.7
Q ss_pred EEEEecccccccccccCchHHHHHHhhhC
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eTg 55 (528)
.+|.+....-|.|||++|..|++|+++-.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 56778889999999999999999887643
No 92
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=41.56 E-value=45 Score=24.29 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=31.6
Q ss_pred hHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHHHHHHhh
Q 009695 388 VSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (528)
Q Consensus 388 Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I~~~l~~ 440 (528)
|++-++..|+-.--. +.++-.|.|+|-|++|.+-+..-.++|..
T Consensus 23 irqarkfagtvtytl---------dgndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 23 IRQARKFAGTVTYTL---------DGNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp HHHHTTTTCEEEEEE---------CSSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceEEEEe---------cCCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 555555566544332 34577899999999999988888888864
No 93
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.08 E-value=12 Score=34.58 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.4
Q ss_pred EEEEecccccccccccCchHHHHHHhhh
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eT 54 (528)
.+|.+....-|.|||++|..|++|+++-
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4667778889999999999999987653
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=39.39 E-value=14 Score=34.87 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=25.3
Q ss_pred EEEEEecccccccccccCchHHHHHHhhhC
Q 009695 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (528)
Q Consensus 26 ~~rilvp~~~vG~VIGk~G~~Ik~I~~eTg 55 (528)
..+|.+....-|.|||++|..|++|+++-.
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 467777889999999999999999887643
No 95
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=38.62 E-value=32 Score=32.10 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred EEEEeCCcceeeeecCCCchhHHHHHhhCCeEEEeCCCCccccCCCCCcEEEEcCCHHHHHHHHHHH
Q 009695 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434 (528)
Q Consensus 368 ~~v~VP~~~~g~IIGkgG~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~V~ItG~~~~v~~A~~~I 434 (528)
.-+.++...+.+++|+++..++.|.+.+++.|-+-. +-.|.|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHH
Confidence 356899999999999999999999999999997632 45578999887555444444
No 96
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.09 E-value=11 Score=35.30 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=25.2
Q ss_pred EEEEEecccccccccccCchHHHHHHhhhC
Q 009695 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (528)
Q Consensus 26 ~~rilvp~~~vG~VIGk~G~~Ik~I~~eTg 55 (528)
..+|.+....-|.|||++|..|++|+++-.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 466778889999999999999999877643
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=33.87 E-value=13 Score=34.72 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=26.6
Q ss_pred EEEEecccccccccccCchHHHHHHhhhCceEE
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIH 59 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eTga~I~ 59 (528)
+.+-+.....|.+|||.|.++..||.-++.-+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 344456778999999999999999999875543
No 98
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=33.55 E-value=11 Score=34.61 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEecccccccccccCchHHHHHHhh
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRD 53 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~e 53 (528)
.+|.+....-|.|||++|+.|++|+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 455667788899999999999988765
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=32.82 E-value=11 Score=36.63 Aligned_cols=37 Identities=14% Similarity=0.348 Sum_probs=27.8
Q ss_pred ceEEEEEeec-ceeeEEecCCChHHHHHH--------hhhCCeEEE
Q 009695 128 VAYCGLLANT-TKIGVVVGKGGRNVTRMR--------IESGAKIVM 164 (528)
Q Consensus 128 ~v~~rllVp~-~~vG~IIGkgG~~Ik~I~--------~~tGa~I~i 164 (528)
.+...++|.. ++.+.||||+|++||+|. +-.|++|..
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4556677774 688999999999999864 446666554
No 100
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.48 E-value=13 Score=35.08 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.2
Q ss_pred EEEEEecccccccccccCchHHHHHHhhhC
Q 009695 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (528)
Q Consensus 26 ~~rilvp~~~vG~VIGk~G~~Ik~I~~eTg 55 (528)
..+|.+....-|.|||++|..|++|+++-.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 456777888999999999999999888643
No 101
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=30.71 E-value=13 Score=34.80 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.3
Q ss_pred EEEEecccccccccccCchHHHHHHhh
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRD 53 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~e 53 (528)
.+|.+....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667788899999999999988765
No 102
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.45 E-value=20 Score=33.74 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=22.7
Q ss_pred EEEEecccccccccccCchHHHHHHhhh
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eT 54 (528)
.+|.+....-|.|||++|+.|++|+++.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHHH
Confidence 3455667788999999999999988763
No 103
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=26.09 E-value=24 Score=33.14 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEeeccccceeeccCCchhHhhHhh
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNA 302 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~ 302 (528)
+++.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 446677778899999999999987654
No 104
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.92 E-value=18 Score=33.52 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=22.4
Q ss_pred EEEEecccccccccccCchHHHHHHhhh
Q 009695 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (528)
Q Consensus 27 ~rilvp~~~vG~VIGk~G~~Ik~I~~eT 54 (528)
++|.+....-|.|||++|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 3455566778999999999999988764
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.70 E-value=20 Score=34.86 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=29.2
Q ss_pred CceEEEEEeCCc-ceeeeecCCCchhHHHH--------HhhCCeEEE
Q 009695 364 DAVAVSILVGAD-FVGCLTGSGSSAVSEME--------DVTGTDIKL 401 (528)
Q Consensus 364 ~~~t~~v~VP~~-~~g~IIGkgG~~Ik~I~--------~~tga~I~i 401 (528)
..+.+.+.|..+ +-+.|||++|+.||+|. +..|++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 357788888885 66899999999999775 446666655
No 106
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=24.70 E-value=19 Score=33.56 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.3
Q ss_pred EEEEeeccccceeeccCCchhHhhHhhcCeeEE
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALIS 308 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~tGa~I~ 308 (528)
+.+.+..+-.|.+|||.|.+++.||.-+...++
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 345566778999999999999999988875544
No 107
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.66 E-value=23 Score=32.58 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEeeccccceeeccCCchhHhhHh
Q 009695 277 RMLFSGWTASGIIGKRGAIVRSLQN 301 (528)
Q Consensus 277 ~l~vP~~~vG~IIGkgG~~Ik~I~~ 301 (528)
++.|-...-|.|||++|..|++|++
T Consensus 43 ~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 43 KVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp EEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred EEEEEeCCCceEEcCCchhHHHHHH
Confidence 3556667889999999999998754
No 108
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=22.87 E-value=30 Score=32.59 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=22.2
Q ss_pred EEEEeeccccceeeccCCchhHhhHhh
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNA 302 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~ 302 (528)
+++.|-...-|.|||++|..|++|+..
T Consensus 49 i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 49 TEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp EEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEcCCCceEECCCchHHHHHHHH
Confidence 456677788899999999999998764
No 109
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.65 E-value=25 Score=32.81 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=22.1
Q ss_pred EEEEeeccccceeeccCCchhHhhHhh
Q 009695 276 LRMLFSGWTASGIIGKRGAIVRSLQNA 302 (528)
Q Consensus 276 ~~l~vP~~~vG~IIGkgG~~Ik~I~~~ 302 (528)
+++.|-...-|.|||++|..|++|++.
T Consensus 46 i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp ECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456677788899999999999987654
No 110
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=20.16 E-value=25 Score=34.03 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=27.0
Q ss_pred eEEEEEeCC-cceeeeecCCCchhHHHH--------HhhCCeEEE
Q 009695 366 VAVSILVGA-DFVGCLTGSGSSAVSEME--------DVTGTDIKL 401 (528)
Q Consensus 366 ~t~~v~VP~-~~~g~IIGkgG~~Ik~I~--------~~tga~I~i 401 (528)
+...+.|.. ++.+.|||++|+.||+|. +..|++|.+
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 455677765 667999999999999765 456777655
Done!