BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009696
(528 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)
Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
S+ VL S + YN DF + + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 384 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 443
Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
DA + K P++L FSVNGSG F G+AEM VD+N W DKW G F
Sbjct: 444 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 496
Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
V+W +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++ ++LKI SY TS+ D
Sbjct: 497 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 556
Query: 444 DFNFYENKE 452
DF+ YE ++
Sbjct: 557 DFSHYEKRQ 565
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)
Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
S+ VL S + YN DF + + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 442
Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
DA + K P++L FSVNGSG F G+AEM VD+N W DKW G F
Sbjct: 443 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 495
Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
V+W +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++ ++LKI SY TS+ D
Sbjct: 496 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 555
Query: 444 DFNFYENKE 452
DF+ YE ++
Sbjct: 556 DFSHYEKRQ 564
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 123/189 (65%), Gaps = 7/189 (3%)
Query: 264 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKL 323
S+ VL S + YN DF + + ++IKSYSEDDIH+ IKY++W ST +GNK+L
Sbjct: 383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRL 442
Query: 324 DATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFF 383
DA + K P++L FSVNGSG F G+AEM VD+N W DKW G F
Sbjct: 443 DAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRF 495
Query: 384 PVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD 443
V+W +KDVPN+ LRHI LENNENKPVT+SRDTQE+ L++ ++LKI SY TS+ D
Sbjct: 496 DVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFD 555
Query: 444 DFNFYENKE 452
DF+ YE ++
Sbjct: 556 DFSHYEKRQ 564
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 269 VLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFN 328
VL + YN +F + + ++IKSYSEDDIH+ IKY +W ST +GNK+LD F
Sbjct: 367 VLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFR 426
Query: 329 EAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWH 388
+K P++L FSVNGSG F G+AEM VD+ W DKW G F VKW
Sbjct: 427 SMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWI 479
Query: 389 VIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFY 448
+KDVPN LRHI LENN+NKPVT+SRDTQE+ L++ ++LKI SY TS+ DDF+ Y
Sbjct: 480 FVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHY 539
Query: 449 ENKE 452
E ++
Sbjct: 540 EKRQ 543
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 11/217 (5%)
Query: 236 FSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYV 295
F ++GG G + G N + S+E VL + YN +F+ + + ++
Sbjct: 338 FGQSGGAGSDSNS-PGNVQPNSAPSVE---SHPVLEKLKAAHSYNPKEFEWNLKSGRVFI 393
Query: 296 IKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQF 355
IKSYSEDDIH+ IKY +W ST +GNK+LD+ F +K P++L FSVNGSG F
Sbjct: 394 IKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG-------PVYLLFSVNGSGHF 446
Query: 356 VGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSR 415
G+AEM VD+ W DKW G F V+W +KDVPN LRHI LENN+NKPVT+SR
Sbjct: 447 CGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSR 506
Query: 416 DTQEIGLKQGLEMLKIFKSYSAKTSLLDDFNFYENKE 452
DTQE+ L++ ++LKI SY TS+ DDF YE ++
Sbjct: 507 DTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQ 543
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
SAS + VL + + YN DF + + ++IKSYSEDDIH+ IKY +W ST
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442
Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
+GNK+LDA + K P++L FSVNGSG F G+AEM VD+N W D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495
Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
KW G F VKW +KDVPN LRHI LENN+NKPVT+SRDTQE+ L++ ++LKI ++
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555
Query: 438 KTSLLDDFNFYE 449
TS+ DDF YE
Sbjct: 556 TTSIFDDFAHYE 567
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
SAS + VL + + YN DF + + ++IKSYSEDDIH+ IKY +W ST
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442
Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
+GNK+LDA + K P++L FSVNGSG F G+AEM VD+N W D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495
Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
KW G F VKW +KDVPN LRHI LENN+NKPVT+SRDTQE+ L++ ++LKI ++
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555
Query: 438 KTSLLDDFNFYE 449
TS+ DDF YE
Sbjct: 556 TTSIFDDFAHYE 567
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Query: 258 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTP 317
SAS + VL + + YN DF + + ++IKSYSEDDIH+ IKY +W ST
Sbjct: 383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTE 442
Query: 318 NGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD 377
+GNK+LDA + K P++L FSVNGSG F G+AEM VD+N W D
Sbjct: 443 HGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQD 495
Query: 378 KWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSA 437
KW G F VKW +KDVPN LRHI LENN+NKPVT+SRDTQE+ L++ ++LKI ++
Sbjct: 496 KWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKH 555
Query: 438 KTSLLDDFNFYE 449
TS+ DDF YE
Sbjct: 556 TTSIFDDFAHYE 567
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 289 EKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFS 348
E ++F+VIKS S + + +WSST GNK+L + + + A +FLFFS
Sbjct: 153 ENSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGA-------KVFLFFS 205
Query: 349 VNGSGQFVGLAEMMGKVDFNKDMDFWQLD-KWNGFFPVKWHVIKDVPNTLLRHITLENNE 407
+N SG+F G+AEM+ + + D W+ + K+ F V+W +++D+ N L+ + +NE
Sbjct: 206 INTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNE 265
Query: 408 NKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKT-SLLDD 444
KP+THSRDTQEI G+ ++ +FK+ + S LD+
Sbjct: 266 MKPITHSRDTQEIPYSIGISIINLFKTQDSDIFSFLDE 303
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
A+F++IKS + +++ VWS+ P KKL+ F A + + L FSV
Sbjct: 358 ARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----------VILIFSVR 407
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQL------DKWNGFFPVKWHVIKDVPNTLLRHITLE 404
SG+F G A + + W L G F + W +++P T H+T
Sbjct: 408 ESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNP 467
Query: 405 NNENKPVTHSRDTQEIGLKQGLEMLKIF 432
NE+KPV RD QEI L+ G ++ +F
Sbjct: 468 WNEHKPVKIGRDGQEIELECGTQLCLLF 495
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
A+F++IKS + +++ VWS+ P KKL+ F A + + L FSV
Sbjct: 355 ARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----------VILIFSVR 404
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQL------DKWNGFFPVKWHVIKDVPNTLLRHITLE 404
SG+F G A + + W L G F + W +++P T H+T
Sbjct: 405 ESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNP 464
Query: 405 NNENKPVTHSRDTQEIGLKQGLEMLKIF 432
NE+KPV RD QEI L+ G ++ +F
Sbjct: 465 WNEHKPVKIGRDGQEIELECGTQLCLLF 492
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
+++++KS + ++ + +WS+TP+ +KL+ F E+ ++L FSV
Sbjct: 529 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM----------VYLVFSVQ 578
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKP 410
GSG F G + M ++ K D W G F V+W + +P H+ N+NK
Sbjct: 579 GSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 637
Query: 411 VTHSRDTQEIGLKQGLEMLKIFK 433
V SRD QE+ + G ++L++++
Sbjct: 638 VQISRDGQELEPQVGEQLLQLWE 660
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 11/142 (7%)
Query: 292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNG 351
+++++KS + ++ + +WS+TP+ +KL+ F E+ ++L FSV G
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSM----------VYLVFSVQG 1353
Query: 352 SGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPV 411
SG F G + M ++ K D W G F V+W + +P H+ N+NK V
Sbjct: 1354 SGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKV 1412
Query: 412 THSRDTQEIGLKQGLEMLKIFK 433
SRD QE+ + G ++L++++
Sbjct: 1413 QISRDGQELEPQVGEQLLQLWE 1434
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
+++++KS + ++ + +WS+TP+ +KL+ F E+ ++L FSV
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSI----------VYLVFSVQ 1337
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKP 410
GSG F G + M ++ K D W G F V+W + +P H+ N+NK
Sbjct: 1338 GSGHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 1396
Query: 411 VTHSRDTQEIGLKQGLEMLKIFK 433
V SRD QE+ G ++L++++
Sbjct: 1397 VQISRDGQELEPLVGEQLLQLWE 1419
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 277 DQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADE 336
DQ N + +++V+KS + ++ ++ VW++ + KL+ F+ E
Sbjct: 223 DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVEN---- 278
Query: 337 TGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLD----KWNGFFPVKWHVIKD 392
+ L FSVN + F G A+M ++ W+ + ++ F VKW + +
Sbjct: 279 ------VILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCE 332
Query: 393 VPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIF 432
+ R++ NEN PV SRD QE+ G ++ +
Sbjct: 333 LSFHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLL 372
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350
++++++KS + +++ ++ +W++ + KL+ F E + L FS+N
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIEN----------VILIFSIN 309
Query: 351 GSGQFVGLAEMMGKVDFNKDMDFWQ----LDKWNGFFPVKWHVIKDVPNTLLRHITLENN 406
+ F G A+M ++ W+ + F ++W + ++ H+ N
Sbjct: 310 RTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQKTHHLRNPYN 369
Query: 407 ENKPVTHSRDTQEIG--LKQGLEMLKIFKSYSAKTSLL 442
+N PV SRD QE+ + + L L + S T++L
Sbjct: 370 DNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAIL 407
>sp|P50125|CYSD_EMENI O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cysD PE=2 SV=2
Length = 437
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 242 LGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQV 286
LG+ T+ ++G +AE+ +A+++ K V T+ +YN+PDF+V
Sbjct: 127 LGITTKFVQGDKAEDIAAAID-DRTKAVYVETIGNPRYNVPDFEV 170
>sp|Q7M9L5|PURL_WOLSU Phosphoribosylformylglycinamidine synthase 2 OS=Wolinella
succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
NCTC 11488 / FDC 602W) GN=purL PE=3 SV=1
Length = 733
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 27/179 (15%)
Query: 206 QKQGFFPNMVNYSTNGRMWNGNDRYKSRDKFSRAGGLGMPTE---LIRGPRAENKSASLE 262
Q G PN+V MW+ + YKS K+ R G PTE +I+GP EN
Sbjct: 23 QILGREPNLVELGVFSAMWSEHCSYKSSKKYLR----GFPTEAAWVIQGP-GENAG---- 73
Query: 263 ISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKK 322
+ D E + + +N P F Y+ A V I DV++
Sbjct: 74 VIDIGEGYAAVFKMESHNHPSFIEPYQGAATGV----------GGIMRDVFTMGARPVAS 123
Query: 323 LDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDKWNG 381
L+A + DE G + L V G G G MG +M F D +NG
Sbjct: 124 LNAIRFGDIRRQDEIGKKHRYLLKGVVAGIG---GYGNCMGVPTVGGEMSFE--DCYNG 177
>sp|A3PA59|ARLY_PROM0 Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT
9301) GN=argH PE=3 SV=1
Length = 459
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 266 KKEVLSPTVSRDQYN-LPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLD 324
K +VLSP+ + N L +VEY + KF S +DIH CI++ + S KKL
Sbjct: 47 KTKVLSPSETLQIINGLESIKVEYLEGKFS--PSLPSEDIHYCIEHKLISLIGETGKKL- 103
Query: 325 ATFNEAEAKADETGTRCPIFL 345
+ ++ D+ GT ++L
Sbjct: 104 ---HTGRSRNDQVGTDIRLWL 121
>sp|Q8IVU1|IGDC3_HUMAN Immunoglobulin superfamily DCC subclass member 3 OS=Homo sapiens
GN=IGDCC3 PE=2 SV=2
Length = 814
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 194 SNPLGNFSAFSNQKQGFFPNMVNYSTNGRMW--NGNDRYKSRDKFSRAGGLGMPTELIRG 251
S P G + F+ Q QG P V + NG++ G+ R K+ + G+G E I
Sbjct: 340 SRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGPGGHVRLKNNNSTLTISGIGPEDEAIYQ 399
Query: 252 PRAENKSASLEISDKKEVL 270
AEN + S + S + VL
Sbjct: 400 CVAENSAGSSQASARLTVL 418
>sp|Q8BQC3|IGDC3_MOUSE Immunoglobulin superfamily DCC subclass member 3 OS=Mus musculus
GN=Igdcc3 PE=2 SV=1
Length = 813
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 194 SNPLGNFSAFSNQKQGFFPNMVNYSTNGRMW--NGNDRYKSRDKFSRAGGLGMPTELIRG 251
S P G + F+ Q QG P V + NG++ G+ R K+ + G+G E I
Sbjct: 352 SRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGAGGHVRLKNNNSTLSISGVGPEDEAIYQ 411
Query: 252 PRAENKSASLEISDKKEVL 270
AEN + S + S + VL
Sbjct: 412 CVAENIAGSSQASARLTVL 430
>sp|Q03F65|SYGA_PEDPA Glycine--tRNA ligase alpha subunit OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=glyQ PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 83 VGVDGQCVGQQPYFSSSGYLQ-----HPVSYGSEVMPCYSWDSTYVADIQNGNAVGFGN 136
V +DG V Q YF G L+ V+YG E + Y D V D++ GN V +G+
Sbjct: 133 VWLDGMEVTQFTYFQQVGGLEVNPVTSEVTYGLERLSSYIQDVESVFDLEWGNGVSYGD 191
>sp|Q2JT08|GLGB_SYNJA 1,4-alpha-glucan branching enzyme GlgB OS=Synechococcus sp. (strain
JA-3-3Ab) GN=glgB PE=3 SV=1
Length = 770
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 363 GKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNE---NKPVTHSRDTQE 419
GK M+F Q ++WN + + W +++ P+ LRH N+ ++P +++DT+
Sbjct: 592 GKKTLFMSMEFGQWNEWNVWADLDWELLQYEPHAKLRHYVATLNQLLRSQPALYTQDTKP 651
Query: 420 IGLK 423
G +
Sbjct: 652 EGFR 655
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,471,091
Number of Sequences: 539616
Number of extensions: 9675788
Number of successful extensions: 16686
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 16626
Number of HSP's gapped (non-prelim): 80
length of query: 528
length of database: 191,569,459
effective HSP length: 122
effective length of query: 406
effective length of database: 125,736,307
effective search space: 51048940642
effective search space used: 51048940642
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)