Query 009696
Match_columns 528
No_of_seqs 206 out of 375
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 16:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 3.7E-76 8.1E-81 621.9 30.4 246 218-467 211-471 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 1.2E-49 2.6E-54 363.2 9.4 136 290-435 1-140 (140)
3 KOG1902 Putative signal transd 100.0 9E-43 2E-47 353.2 11.7 150 277-438 60-214 (441)
4 PRK00809 hypothetical protein; 93.8 0.22 4.7E-06 46.8 7.3 93 292-398 2-108 (144)
5 PF01878 EVE: EVE domain; Int 82.5 4.4 9.6E-05 37.0 6.7 128 292-431 1-143 (143)
6 PRK02268 hypothetical protein; 31.9 1E+02 0.0023 29.3 5.5 122 292-432 3-136 (141)
7 PF11453 DUF2950: Protein of u 28.6 59 0.0013 34.1 3.5 49 28-90 182-244 (271)
8 PF10539 Dev_Cell_Death: Devel 25.1 1.4E+02 0.0031 28.1 5.1 116 299-432 8-130 (130)
9 COG1355 Predicted dioxygenase 19.4 59 0.0013 34.2 1.5 45 409-454 155-201 (279)
10 PF07469 DUF1518: Domain of un 11.9 1.3E+02 0.0029 24.8 1.4 18 84-101 1-25 (58)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=3.7e-76 Score=621.87 Aligned_cols=246 Identities=57% Similarity=0.950 Sum_probs=215.6
Q ss_pred CcCCCcccCcccCCCCCCCCC------CCCCCCCCCCcCCCCCCCCCCCcccc---------cccccCCcccCCCCCCCC
Q 009696 218 STNGRMWNGNDRYKSRDKFSR------AGGLGMPTELIRGPRAENKSASLEIS---------DKKEVLSPTVSRDQYNLP 282 (528)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~e~~~gpr~~~~~~~~~~~---------~~~~~~~~~~~~~~yn~~ 282 (528)
..+++.|...+..+++...+. ....+.++|+|||||+...+.....+ ........++++++||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nrg~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~yn~~ 290 (487)
T KOG1901|consen 211 QPKGRSPYGVDNSRPTWGINYPRLPSDEAGSDSLNEQNRGPRSSDSRGQDINSSGPTEAGSASAPESNESVKRRDRYNPP 290 (487)
T ss_pred cccCCCCcccCCCcccccccCCCccccccccccccccccCcccccccCccccCCcchhccccccccccccccChhhcCcc
Confidence 456677766655555433221 12367789999999998544332111 011111368999999999
Q ss_pred CcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEee
Q 009696 283 DFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMM 362 (528)
Q Consensus 283 df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~ 362 (528)
+|++++.+|||||||||+|||||+||||+|||||+++|||||+||++++. +..+||||||||||+||||||||||+
T Consensus 291 ~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~----~~~~cPvfLfFSVNaSGqFCGvAEMv 366 (487)
T KOG1901|consen 291 DFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKK----KSGKCPVFLFFSVNASGQFCGVAEMV 366 (487)
T ss_pred ccccccccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhh----ccCCCCceEEEEEcCCccccceeeec
Confidence 99999999999999999999999999999999999999999999999985 45799999999999999999999999
Q ss_pred cccCCCCCchhhhhccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhcCCCCCcC
Q 009696 363 GKVDFNKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLL 442 (528)
Q Consensus 363 S~vd~~k~~~~W~qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~~~~tSil 442 (528)
+||||+++++||+||||.|.|+||||+||||||..||||++++|||||||+|||+|||.+++|++||+||++|.++||||
T Consensus 367 gPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiL 446 (487)
T KOG1901|consen 367 GPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSIL 446 (487)
T ss_pred cceecccccchhhhcccceecceeeEEEeeCCccceeEEEeecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhhhhhcccccCCCCccc
Q 009696 443 DDFNFYENKERSFHGKKSSKPATLQ 467 (528)
Q Consensus 443 ddF~~ye~rek~~~~~~~~~~~~~~ 467 (528)
|||.|||+||+.|+++|+++++.+.
T Consensus 447 DDf~~Ye~rq~~~~~~k~r~~~~~~ 471 (487)
T KOG1901|consen 447 DDFGFYEERQKIIQDKKARQPPKLE 471 (487)
T ss_pred ccccchHHHHHHhhhcccccCcccc
Confidence 9999999999999999999887665
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=1.2e-49 Score=363.19 Aligned_cols=136 Identities=48% Similarity=0.870 Sum_probs=114.3
Q ss_pred CcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEeecccCCCC
Q 009696 290 KAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNK 369 (528)
Q Consensus 290 ~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~S~vd~~k 369 (528)
++|||||||+|++||++|+++|||+|+++++++|++||++++ +||||||||+||||||||+|+|+++.+.
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~----------~V~L~FSvn~S~~F~G~A~M~s~~~~~~ 70 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR----------NVYLFFSVNGSGHFQGYARMTSPIDPDS 70 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-----------EEEEEEETTTSEEEEEEEEECECCSSS
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC----------CEEEEEeecCcceEEEEEEEccCCCCcc
Confidence 589999999999999999999999999999999999999984 7999999999999999999999999999
Q ss_pred Cchhhh----hccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhc
Q 009696 370 DMDFWQ----LDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSY 435 (528)
Q Consensus 370 ~~~~W~----qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~ 435 (528)
...+|. ..+|+|.|+|+||++++|||+.++||+|++|+||||+++||||||++++|++||+||+++
T Consensus 71 ~~~~w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 71 PKPFWQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp ------SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred cCccccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 999995 479999999999999999999999999999999999999999999999999999999863
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=9e-43 Score=353.20 Aligned_cols=150 Identities=31% Similarity=0.570 Sum_probs=137.5
Q ss_pred CCCCCCCcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCcee
Q 009696 277 DQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFV 356 (528)
Q Consensus 277 ~~yn~~df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~ 356 (528)
++++....+ .-.+|||||||.|.+||.+|++.|||+|++.|++||+.||+++. .||||||||.|||||
T Consensus 60 ~~~~~ss~~--~~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s~----------~ViLIFSVn~SghFQ 127 (441)
T KOG1902|consen 60 DQTSKLKYV--LQDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSSR----------SVILIFSVNESGHFQ 127 (441)
T ss_pred hhccccccc--CCceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhcC----------cEEEEEEecccccch
Confidence 444444333 24899999999999999999999999999999999999999985 699999999999999
Q ss_pred EEEEeecccCCCCCchhhhh-----ccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHH
Q 009696 357 GLAEMMGKVDFNKDMDFWQL-----DKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKI 431 (528)
Q Consensus 357 G~AeM~S~vd~~k~~~~W~q-----dkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkI 431 (528)
|||+|+|+|...++...|.+ ..|+|.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|
T Consensus 128 G~ArMsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~L 207 (441)
T KOG1902|consen 128 GFARMSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLL 207 (441)
T ss_pred hhhhhcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHh
Confidence 99999999999999888876 6799999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC
Q 009696 432 FKSYSAK 438 (528)
Q Consensus 432 F~~~~~~ 438 (528)
+...+..
T Consensus 208 l~~~p~~ 214 (441)
T KOG1902|consen 208 LPPDPSI 214 (441)
T ss_pred cCCCcch
Confidence 9876654
No 4
>PRK00809 hypothetical protein; Provisional
Probab=93.82 E-value=0.22 Score=46.77 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=62.2
Q ss_pred EEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC------CCCceeEEEEeeccc
Q 009696 292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN------GSGQFVGLAEMMGKV 365 (528)
Q Consensus 292 RFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN------~Sg~F~G~AeM~S~v 365 (528)
+|+|+=+ |+||+......|||-..... +++-..- ..+..+||++-+ .-..|.|+|++++..
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~-----rn~lr~M-------k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~ 68 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERY-----KNTIEKV-------KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEW 68 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhh-----hhHHhhC-------CCCCEEEEEECCccCCCCCCceEEEEEEEecCc
Confidence 5776666 99999999999999995432 1221111 135688888887 478999999999875
Q ss_pred CCCCCchhhh------hccCCCccceEEEEEec--CCCccc
Q 009696 366 DFNKDMDFWQ------LDKWNGFFPVKWHVIKD--VPNTLL 398 (528)
Q Consensus 366 d~~k~~~~W~------qdkw~G~F~VkWi~vkd--VPf~~l 398 (528)
-.+.+ .+|. .+.+--..+|+++...+ ||...|
T Consensus 69 y~D~t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L 108 (144)
T PRK00809 69 YEDST-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL 108 (144)
T ss_pred ccCCc-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence 32221 1332 12223467899998877 776665
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=82.45 E-value=4.4 Score=36.95 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=65.7
Q ss_pred EEEEEecC----ChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC-CCCceeEEEEeecccC
Q 009696 292 KFYVIKSY----SEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN-GSGQFVGLAEMMGKVD 366 (528)
Q Consensus 292 RFFVIKS~----nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN-~Sg~F~G~AeM~S~vd 366 (528)
+|+|+|+. +-+++ .-.+..+|.-..+...+- +++..+ .+.-+||+.-+ ..+.|.|+|+.++..-
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk--------~GD~vifY~s~~~~~~ivai~~V~~~~~ 69 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK--------PGDKVIFYHSGCKERGIVAIGEVVSEPY 69 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC----------TT-EEEEEETSSSS-EEEEEEEEEEEEE
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC--------CCCEEEEEEcCCCCCEEEEEEEEecccc
Confidence 58999998 76666 455556666444333322 444332 44677778777 6799999999998753
Q ss_pred CCCCc----hhhhhcc---CCCccceEEEEEec--CCCccccccccCCCCCCceeec-CCCeeechHHHHHHHHH
Q 009696 367 FNKDM----DFWQLDK---WNGFFPVKWHVIKD--VPNTLLRHITLENNENKPVTHS-RDTQEIGLKQGLEMLKI 431 (528)
Q Consensus 367 ~~k~~----~~W~qdk---w~G~F~VkWi~vkd--VPf~~lrHI~N~~NeNKPVt~s-RDgQEI~~~~G~qLLkI 431 (528)
.+... ..|...+ .....+|+++..-+ |+...|+... .+.+-.-++.. .--.+|..+.-..|++|
T Consensus 70 ~d~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~~-~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 70 PDPTAFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAEP-ELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp E-GGGTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC-G-GGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred CCCccccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcCC-ccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 22211 1111222 23356788886644 4446664320 11111111111 23456667766666654
No 6
>PRK02268 hypothetical protein; Provisional
Probab=31.88 E-value=1e+02 Score=29.30 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=70.1
Q ss_pred EEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEE-------CCCCceeEEEEeecc
Q 009696 292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSV-------NGSGQFVGLAEMMGK 364 (528)
Q Consensus 292 RFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSV-------N~Sg~F~G~AeM~S~ 364 (528)
+|. |=.-|+|++.+.++.|+|-. .|+.+ +..+.- ..+.-+|++|= ..-..|.+++++++.
T Consensus 3 ~yW-I~v~s~~hv~~g~~~gf~qv-~hgK~---apl~Rm--------kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~ 69 (141)
T PRK02268 3 RYW-IGVVSAEHVRRGVEGGFMQV-CHGKA---APLRRM--------KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDD 69 (141)
T ss_pred ceE-EEEccHHHHHHHHhCCEEEe-CCCcc---chhhcC--------CCCCEEEEEeceEecCCCcccceEEEEEEEcCC
Confidence 444 33567999999999999977 44433 111111 13467777772 235789999999886
Q ss_pred cCCCCCchhhhhccCC-CccceEEEEEecCCCccc----cccccCCCCCCceeecCCCeeechHHHHHHHHHH
Q 009696 365 VDFNKDMDFWQLDKWN-GFFPVKWHVIKDVPNTLL----RHITLENNENKPVTHSRDTQEIGLKQGLEMLKIF 432 (528)
Q Consensus 365 vd~~k~~~~W~qdkw~-G~F~VkWi~vkdVPf~~l----rHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF 432 (528)
--+...+. ..|. =.++|+|+.+.++|++-| +.|++.-+=.... -.---||+-+-.+.+...+
T Consensus 70 ~~Yq~~m~----~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f--r~g~~eI~e~Df~~I~~am 136 (141)
T PRK02268 70 EPYQVEMA----PGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF--RFGHFEISKHDFETIASAM 136 (141)
T ss_pred ceEecccC----CCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh--cCCcEecCHHHHHHHHHHh
Confidence 33332211 0111 135699999999998765 3444432222222 1223677666555554443
No 7
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=28.62 E-value=59 Score=34.08 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCCCccccc---C--CCCCCCCCCCCCcceecCC-C--------CcceecCCCceEEecCCCCCCcccccccCccc
Q 009696 28 PSTVHYNYYY---P--GSNGSFSQVDNNGYIHTDG-S--------HSGVHSDNGSLLYYLPGYDPYSTLVGVDGQCV 90 (528)
Q Consensus 28 P~~~~YgyYy---~--G~~g~~~~~d~~~y~~~dG-~--------y~gvq~DNgsyvY~~pGY~pY~~~~G~DGQ~y 90 (528)
|...|||||| + |=..||+-.| |.++| | ++.-|++.|= |= =||..||+.|
T Consensus 182 ~~~~YhGY~frIL~~qG~~ApGGa~~----Yvv~G~M~~GfalvAwPa~YG~TGV-mt---------F~Vn~~g~VY 244 (271)
T PF11453_consen 182 PGEGYHGYRFRILTAQGPHAPGGAYD----YVVNGKMIGGFALVAWPAEYGETGV-MT---------FMVNQDGQVY 244 (271)
T ss_pred CCCCccceEEEEccCCCCCCCCcccc----eeeccccccceEEEEeehhhCCCce-EE---------EEECCCCcEE
Confidence 5677899999 2 4445554444 45555 2 5556666662 22 2589999876
No 8
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=25.14 E-value=1.4e+02 Score=28.13 Aligned_cols=116 Identities=16% Similarity=0.308 Sum_probs=77.4
Q ss_pred CChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEeecccCCCCCchhhhhcc
Q 009696 299 YSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNKDMDFWQLDK 378 (528)
Q Consensus 299 ~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~S~vd~~k~~~~W~qdk 378 (528)
+|.+-+....++.+........ +-+ +.-+ .+-++|||= -...+..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~---~~V-~~I~-------pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~ 74 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHK---DFV-KKIK-------PGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSG 74 (130)
T ss_pred ECCCCHHHHHhcccccCChhhh---hHH-heeC-------CCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCC
Confidence 4445566777777777765321 211 1111 234666653 37899999999999988888888887633
Q ss_pred -----CCC--ccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHH
Q 009696 379 -----WNG--FFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIF 432 (528)
Q Consensus 379 -----w~G--~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF 432 (528)
+-- .|.|.| ....||-..++|++-+|=.++. +=-.||...+-..||.||
T Consensus 75 ~~~~~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~~~----kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 75 SGESPFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYDKN----KFRFELSHQQVRKLLSLF 130 (130)
T ss_pred CCCcccceEEEEEEee-eeecCCHHHHHHHHHHhCCCCC----cccCcCCHHHHHHHHHhC
Confidence 222 467777 5568899999999854322211 336899999999999987
No 9
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=19.41 E-value=59 Score=34.24 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=38.1
Q ss_pred CceeecCCCeeechHHHHHHHHHHhhcCCCCCcCc--cchhhHhhhhh
Q 009696 409 KPVTHSRDTQEIGLKQGLEMLKIFKSYSAKTSLLD--DFNFYENKERS 454 (528)
Q Consensus 409 KPVt~sRDgQEI~~~~G~qLLkIF~~~~~~tSild--dF~~ye~rek~ 454 (528)
-||..+.-..|+..+.|+.++++.+++. ++.|.- ||.|||-.+..
T Consensus 155 VPi~m~~q~~~~a~~ig~~i~k~i~e~~-~~liIaSSDf~HYep~~~~ 201 (279)
T COG1355 155 VPICMGMQDKEVARDIGRAIAKVIKELG-DALIIASSDFTHYEPQDIV 201 (279)
T ss_pred EeEEEecccHHHHHHHHHHHHHHHhhcC-CeEEEEecCccccCchhhh
Confidence 6888899999999999999999999998 666665 99999655544
No 10
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=11.87 E-value=1.3e+02 Score=24.85 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=11.3
Q ss_pred cccCcccc-------cCCCCCCCCC
Q 009696 84 GVDGQCVG-------QQPYFSSSGY 101 (528)
Q Consensus 84 G~DGQ~yG-------~Q~y~~~~~Y 101 (528)
|+|||+-+ +|++.|+++|
T Consensus 1 ~m~g~~g~p~~pQ~~~qqFpyppny 25 (58)
T PF07469_consen 1 SMPGQMGGPRMPQAQPQQFPYPPNY 25 (58)
T ss_pred CCCcccCCccCCCCCccccccCCCC
Confidence 56788776 5566665544
Done!