Query 009696
Match_columns 528
No_of_seqs 206 out of 375
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 1.6E-55 5.5E-60 416.7 9.4 165 271-454 8-178 (180)
2 2yu6_A YTH domain-containing p 100.0 8.9E-54 3E-58 390.9 10.4 137 288-435 5-141 (141)
3 2hd9_A UPF0310 protein PH1033; 95.9 0.016 5.4E-07 52.7 7.1 125 292-432 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 94.5 0.075 2.6E-06 48.4 7.1 124 291-430 4-146 (147)
5 2eve_A Hypothetical protein ps 38.3 1.3E+02 0.0046 27.9 8.7 131 292-435 2-152 (157)
6 4a1x_C CP5-46-A peptide; hydro 26.3 31 0.0011 22.8 1.7 15 65-79 2-18 (26)
7 3eop_A Thymocyte nuclear prote 24.9 57 0.0019 30.9 3.8 124 299-433 22-168 (176)
8 2ar1_A Hypothetical protein; s 23.0 3.4E+02 0.012 25.5 8.7 130 290-432 18-166 (172)
9 2jvf_A De novo protein M7; tet 15.5 33 0.0011 28.6 0.0 22 410-431 9-34 (96)
10 4f0q_A Restriction endonucleas 7.4 1.9E+02 0.0064 31.0 2.4 49 315-363 127-186 (456)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=416.66 Aligned_cols=165 Identities=29% Similarity=0.519 Sum_probs=156.0
Q ss_pred CcccCCCCCCCCCcccCCCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC
Q 009696 271 SPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN 350 (528)
Q Consensus 271 ~~~~~~~~yn~~df~~~~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN 350 (528)
...+++|+||..++. ++++|||||||++++|||+|++|||||||++||++|++||++++ +||||||||
T Consensus 8 ~~~~~~~~~~~~~~~--~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~----------~V~L~FSVn 75 (180)
T 2yud_A 8 VRAVRKDQTSKLKYV--LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR----------SVILIFSVR 75 (180)
T ss_dssp CCCCCCCSSHHHHHH--TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS----------CEEEEEEET
T ss_pred hhhcchhhccccccc--cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC----------eEEEEEEeC
Confidence 356889999998777 57999999999999999999999999999999999999999975 799999999
Q ss_pred CCCceeEEEEeecccCCCCCchhhh------hccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHH
Q 009696 351 GSGQFVGLAEMMGKVDFNKDMDFWQ------LDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQ 424 (528)
Q Consensus 351 ~Sg~F~G~AeM~S~vd~~k~~~~W~------qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~ 424 (528)
+||+|||||+|+|+++++....+|+ +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++
T Consensus 76 ~Sg~F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~ 155 (180)
T 2yud_A 76 ESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELEC 155 (180)
T ss_dssp TTSEEEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHH
T ss_pred CCCcEEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHH
Confidence 9999999999999999998888996 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcCccchhhHhhhhh
Q 009696 425 GLEMLKIFKSYSAKTSLLDDFNFYENKERS 454 (528)
Q Consensus 425 G~qLLkIF~~~~~~tSilddF~~ye~rek~ 454 (528)
|++||+||+.+ +++++|+.|+|.
T Consensus 156 G~~L~~lf~~~-------~~~~~~~~~~~~ 178 (180)
T 2yud_A 156 GTQLCLLFPPD-------ESIDLYQVIHKM 178 (180)
T ss_dssp HHHHHHHSCCC-------SSSCSHHHHHHH
T ss_pred HHHHHHhcccC-------cCccHHHHHHhh
Confidence 99999999876 689999999986
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=8.9e-54 Score=390.88 Aligned_cols=137 Identities=28% Similarity=0.548 Sum_probs=132.1
Q ss_pred CCCcEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCCCceeEEEEeecccCC
Q 009696 288 YEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDF 367 (528)
Q Consensus 288 ~~~aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~Sg~F~G~AeM~S~vd~ 367 (528)
..++|||||||++++|||+|++||||+||++||++|++||++++ +||||||||+||||||||+|++++++
T Consensus 5 ~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~----------~V~L~FSvn~Sg~F~G~A~M~s~~~~ 74 (141)
T 2yu6_A 5 SSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS----------IVYLVFSVQGSGHFQGFSRMSSEIGR 74 (141)
T ss_dssp CCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS----------CEEEEEEESSSSEECEEEEECSCSSS
T ss_pred CCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC----------cEEEEEEECCCCeEEEEEEEcccCCC
Confidence 46899999999999999999999999999999999999999974 89999999999999999999999999
Q ss_pred CCCchhhhhccCCCccceEEEEEecCCCccccccccCCCCCCceeecCCCeeechHHHHHHHHHHhhc
Q 009696 368 NKDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITLENNENKPVTHSRDTQEIGLKQGLEMLKIFKSY 435 (528)
Q Consensus 368 ~k~~~~W~qdkw~G~F~VkWi~vkdVPf~~lrHI~N~~NeNKPVt~sRDgQEI~~~~G~qLLkIF~~~ 435 (528)
....+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 -~~~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 75 -EKSQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp -CCCCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred -CCCccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 5667899999999999999999999999999999999999999999999999999999999999864
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=95.90 E-value=0.016 Score=52.74 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=80.9
Q ss_pred EEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEECCC--------CceeEEEEeec
Q 009696 292 KFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGS--------GQFVGLAEMMG 363 (528)
Q Consensus 292 RFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN~S--------g~F~G~AeM~S 363 (528)
+|.++|| +.|++....+.|+|-. .+..+. +-.+- ..+...|||+-+.. ..|.|+|++++
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn----~lr~m-------k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~ 68 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKN----TLSRV-------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS 68 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHH----HHTTC-------CTTCEEEEEECCEECTTCCEECCEEEEEEEECS
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHH----HHHhC-------CCCCEEEEEEccccccCCCCCCceEEEEEEEcC
Confidence 5899998 8999999999999976 444332 22211 24568888887665 79999999998
Q ss_pred ccCCCCCchhhhhccC-----CCccceEEEEEecCCCccccccccCCCCC-----CceeecCCCeeechHHHHHHHHHH
Q 009696 364 KVDFNKDMDFWQLDKW-----NGFFPVKWHVIKDVPNTLLRHITLENNEN-----KPVTHSRDTQEIGLKQGLEMLKIF 432 (528)
Q Consensus 364 ~vd~~k~~~~W~qdkw-----~G~F~VkWi~vkdVPf~~lrHI~N~~NeN-----KPVt~sRDgQEI~~~~G~qLLkIF 432 (528)
..-.+.+ .+|...+| --...|+++.+..||+..++. .+.+=.| .++ .-+--++|+.+....||+.+
T Consensus 69 e~y~D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 69 EPYVDFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCEECCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CcEeCCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 6543322 12222222 124568898889999887765 3332221 112 02337999999999988754
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.51 E-value=0.075 Score=48.37 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=76.4
Q ss_pred cEEEEEecCChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC--C----CCceeEEEEeecc
Q 009696 291 AKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN--G----SGQFVGLAEMMGK 364 (528)
Q Consensus 291 aRFFVIKS~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN--~----Sg~F~G~AeM~S~ 364 (528)
.+|.|+||. ++++...++.|+|-. .+..+.+-+ +- ..+...||+... . -..|.|+|++++.
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr----~M-------k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e 70 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN----KV-------KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSE 70 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT----TC-------CTTCEEEEEECCBCSTTCBCCEEEEEEEECSC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH----hC-------CCCCEEEEEEecccCCCCCCCEEEEEEEEecc
Confidence 469999886 677999999999966 433222111 11 234677777333 3 3589999999985
Q ss_pred cCCCCCchhhhh------ccCCCccceEEEEE--ecCCCcccc----ccccCCC-CCCceeecCCCeeechHHHHHHHH
Q 009696 365 VDFNKDMDFWQL------DKWNGFFPVKWHVI--KDVPNTLLR----HITLENN-ENKPVTHSRDTQEIGLKQGLEMLK 430 (528)
Q Consensus 365 vd~~k~~~~W~q------dkw~G~F~VkWi~v--kdVPf~~lr----HI~N~~N-eNKPVt~sRDgQEI~~~~G~qLLk 430 (528)
.-.+. ..||.. +..--..+|+++.. ..||...|+ +|++.-. .+.-|..+ -++|+.+.-..||+
T Consensus 71 ~y~D~-t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~ 146 (147)
T 2p5d_A 71 VYKDS-SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVG 146 (147)
T ss_dssp CEECC-CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHT
T ss_pred cccCC-cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHh
Confidence 43222 112221 22223688999988 889888777 2222211 22224555 89999998888875
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=38.25 E-value=1.3e+02 Score=27.85 Aligned_cols=131 Identities=15% Similarity=0.307 Sum_probs=75.2
Q ss_pred EEEEEec----CChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC-CCCceeEEEEeeccc-
Q 009696 292 KFYVIKS----YSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN-GSGQFVGLAEMMGKV- 365 (528)
Q Consensus 292 RFFVIKS----~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN-~Sg~F~G~AeM~S~v- 365 (528)
+|.++|| |+-||+.. -+...|.=.++-..| -|-.+- ..+...||+.-| ....+.|+|+.++..
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr---N~mr~M-------k~GD~~ffYHS~c~~pgIvGi~eVv~e~y 70 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR---NFLRTM-------AEGDEFFFYHSSCPEPGIAGIGKIVKTAY 70 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH---HHHHHC-------CTTCEEEEEECSSSSCEEEEEEEEEEEEE
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH---HHHHhc-------CCCCEEEEEecCCCCCEEEEEEEEeEccC
Confidence 4677776 67888887 555889755543221 111111 134566777766 889999999999843
Q ss_pred ----CCCCCchhhhh------ccCCCccceEEEEE--ecCCCccccccccCCCCCCceee-cC-CCeeechHHHHHHHHH
Q 009696 366 ----DFNKDMDFWQL------DKWNGFFPVKWHVI--KDVPNTLLRHITLENNENKPVTH-SR-DTQEIGLKQGLEMLKI 431 (528)
Q Consensus 366 ----d~~k~~~~W~q------dkw~G~F~VkWi~v--kdVPf~~lrHI~N~~NeNKPVt~-sR-DgQEI~~~~G~qLLkI 431 (528)
.|+....||.. .+|. .+.|+-+.. +-|+...+|... ++.+..-|+. +| --|-|..++-..||+|
T Consensus 71 pD~t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l 148 (157)
T 2eve_A 71 PDPTALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILAL 148 (157)
T ss_dssp ECGGGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred CCcccccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHH
Confidence 34555566632 2343 344454433 445555555432 2333333444 23 3577888888888887
Q ss_pred Hhhc
Q 009696 432 FKSY 435 (528)
Q Consensus 432 F~~~ 435 (528)
=.++
T Consensus 149 ~~~~ 152 (157)
T 2eve_A 149 RLEH 152 (157)
T ss_dssp HC--
T ss_pred hhhh
Confidence 5443
No 6
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=26.32 E-value=31 Score=22.80 Aligned_cols=15 Identities=60% Similarity=1.271 Sum_probs=11.6
Q ss_pred CCCceEEec--CCCCCC
Q 009696 65 DNGSLLYYL--PGYDPY 79 (528)
Q Consensus 65 DNgsyvY~~--pGY~pY 79 (528)
+=|-+||+. |||.|-
T Consensus 2 elgrlvylldgpgydpi 18 (26)
T 4a1x_C 2 ELGRLVYLLDGPGYDPI 18 (26)
T ss_pred ccceEEEEecCCCCCce
Confidence 457789987 999874
No 7
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=24.91 E-value=57 Score=30.90 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=72.2
Q ss_pred CChhhHHHh-hhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC-CCCceeEEEEeeccc-----CCCCCc
Q 009696 299 YSEDDIHKC-IKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN-GSGQFVGLAEMMGKV-----DFNKDM 371 (528)
Q Consensus 299 ~nednIhkS-ikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN-~Sg~F~G~AeM~S~v-----d~~k~~ 371 (528)
|+-||+... .+...|.=-++-..|-. .|+- ..+...||+--| ..-.+.|+|+++... .|+...
T Consensus 22 fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M--------k~GD~~fFYHSnck~pgIvGi~eVv~e~ypD~T~fDp~s 91 (176)
T 3eop_A 22 FSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM--------KLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNN 91 (176)
T ss_dssp CCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC--------CTTCEEEEEECCSSSCEEEEEEEEEEEEEECGGGTCTTS
T ss_pred EeHHHHHhccCCCCcccCcccHHHHHH--HHhc--------CCCCEEEEEecCCCCCeEEEEEEEeeccccCCcccCCCC
Confidence 667888765 34567986655433211 1111 123455666655 778999999999743 345555
Q ss_pred hhhhh------ccCCCccceEEEEE--ecCCCccccccc-------cCCCCCCceeecC-CCeeechHHHHHHHHHHh
Q 009696 372 DFWQL------DKWNGFFPVKWHVI--KDVPNTLLRHIT-------LENNENKPVTHSR-DTQEIGLKQGLEMLKIFK 433 (528)
Q Consensus 372 ~~W~q------dkw~G~F~VkWi~v--kdVPf~~lrHI~-------N~~NeNKPVt~sR-DgQEI~~~~G~qLLkIF~ 433 (528)
.||.. .+|. ...|+-+.. +-|+-..++... -++.+..-|+.+| --|-|..++-..||++-+
T Consensus 92 ~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 168 (176)
T 3eop_A 92 PHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEE 168 (176)
T ss_dssp TTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHHHHHHHGGG
T ss_pred CCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHHHHHHHHHh
Confidence 56642 2454 466666654 456666666653 1333444455555 456777777777777654
No 8
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=23.02 E-value=3.4e+02 Score=25.50 Aligned_cols=130 Identities=20% Similarity=0.330 Sum_probs=71.4
Q ss_pred CcEEEEEec----CChhhHHHhhhcceeecCCcchhHHHHHHHHHHhhccccCCcccEEEEEEEC-CCCceeEEEEeecc
Q 009696 290 KAKFYVIKS----YSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVN-GSGQFVGLAEMMGK 364 (528)
Q Consensus 290 ~aRFFVIKS----~nednIhkSikygVWaSt~~nnkkLd~AF~ea~~~~~~~~~~~pVyLfFSVN-~Sg~F~G~AeM~S~ 364 (528)
.-+|.++|| |+-||+.. -....|.-.++-..|- -.+.. ..+...||+.-| ....+.|+|++++.
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M--------k~GD~vfFYHS~c~~pgIvGi~eVv~e 86 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM--------SVGDKVLFYHSNTKEPGVAGLAEVVRL 86 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC--------CTTCEEEEEECSSSSCEEEEEEEEEEE
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc--------CCCCEEEEEecCCCCCEEEEEEEEeee
Confidence 346999997 67888887 4447898655433211 11211 123556666666 88999999999984
Q ss_pred c-----CCCCCchhhhh------ccCCCccceEEEEE--ecCCCccccccccCCCCCCceeecC-CCeeechHHHHHHHH
Q 009696 365 V-----DFNKDMDFWQL------DKWNGFFPVKWHVI--KDVPNTLLRHITLENNENKPVTHSR-DTQEIGLKQGLEMLK 430 (528)
Q Consensus 365 v-----d~~k~~~~W~q------dkw~G~F~VkWi~v--kdVPf~~lrHI~N~~NeNKPVt~sR-DgQEI~~~~G~qLLk 430 (528)
. .|+....||.. .+|. .+.|+-+.. .-|+...|+... ++.+-.-|..+| --|-|..++-..||+
T Consensus 87 ~ypD~t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~ 164 (172)
T 2ar1_A 87 AYDDFTALDKTSEYFDPKATKEKNPWK-MVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILR 164 (172)
T ss_dssp EEECGGGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHH
T ss_pred ccCCcccccccCcccCcccCCCCCCeE-EEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHH
Confidence 3 34445566642 1333 344444432 344444444332 122222233333 345666677777776
Q ss_pred HH
Q 009696 431 IF 432 (528)
Q Consensus 431 IF 432 (528)
|-
T Consensus 165 l~ 166 (172)
T 2ar1_A 165 MN 166 (172)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=15.47 E-value=33 Score=28.56 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=15.6
Q ss_pred ceeecCCCeeechHH----HHHHHHH
Q 009696 410 PVTHSRDTQEIGLKQ----GLEMLKI 431 (528)
Q Consensus 410 PVt~sRDgQEI~~~~----G~qLLkI 431 (528)
.+++.||||||+.++ |.+|-+.
T Consensus 9 tikiqrdgqeieidirvstgkelera 34 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDIRVSTGKELERA 34 (96)
T ss_dssp EEEEEETTEEEEEEEECCSSSHHHHH
T ss_pred EEEEeeCCeEEEEEEEEcccHHHHHH
Confidence 478899999998753 5555443
No 10
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=7.36 E-value=1.9e+02 Score=31.04 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=29.4
Q ss_pred cCCcchhHHHHHHHHHHhhc-cccCCcccEEEEEEE--CCCC--------ceeEEEEeec
Q 009696 315 STPNGNKKLDATFNEAEAKA-DETGTRCPIFLFFSV--NGSG--------QFVGLAEMMG 363 (528)
Q Consensus 315 St~~nnkkLd~AF~ea~~~~-~~~~~~~pVyLfFSV--N~Sg--------~F~G~AeM~S 363 (528)
.+..+|+.|-++|....... .+...-+|+|+|..+ +.++ .|+|++-|..
T Consensus 127 ~~~~GN~~Ll~~f~~~~~~~~~~R~~iPPifiF~k~~~~r~~r~v~~g~l~f~G~~~i~~ 186 (456)
T 4f0q_A 127 GETKGNRLLLEAARLHAGTTREERLLAPPLFLFRAVTVHRAGRAVVKGHVEFCGAAIIER 186 (456)
T ss_dssp TCSHHHHHHHHHHHHHTCSSHHHHTTCCCEEEEEECCEEETTEEECSSEEEEEEEEEEEE
T ss_pred CCCchhHHHHHHHHHHhCCChhhhccCCCEEEEEeccccccccceeecceeccCcccccc
Confidence 36678888888886543110 011224588887774 3343 3899988775
Done!