Query 009697
Match_columns 528
No_of_seqs 189 out of 970
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4E-53 1.4E-57 399.8 14.7 156 5-162 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.4E-53 1.2E-57 399.2 12.3 157 6-164 13-169 (171)
3 1jgn_B PAIP2, polyadenylate-bi 12.3 1.2E+02 0.004 19.9 1.9 19 379-397 4-22 (26)
4 1ldd_A APC2WHB, anaphase promo 10.5 1.3E+02 0.0044 24.5 2.1 27 11-38 37-64 (74)
5 2oh5_A Polyhedrin, C-polyhedri 10.1 1.6E+02 0.0054 27.8 2.8 28 90-117 140-168 (248)
6 4dox_A Coat protein; all helix 6.3 2.2E+02 0.0074 27.8 2.0 25 7-31 152-176 (226)
7 1cmb_A Met APO-repressor; DNA- 5.8 4.8E+02 0.016 22.2 3.5 39 17-59 50-88 (104)
8 1na6_A Ecorii, restriction end 4.9 9.9E+02 0.034 25.1 6.1 41 112-157 79-123 (404)
9 2jv2_A Putative uncharacterize 4.9 3E+02 0.01 22.6 1.7 28 21-49 27-54 (83)
10 2nuw_A 2-keto-3-deoxygluconate 4.7 2.4E+02 0.0083 27.5 1.3 19 9-28 97-116 (288)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4e-53 Score=399.80 Aligned_cols=156 Identities=51% Similarity=0.971 Sum_probs=136.2
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCcc
Q 009697 5 FASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRT 84 (528)
Q Consensus 5 ~~~~~LPPGfRF~PTDEELI~~YLkrKi~G~plp~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFs~r~kK~~~G~R~ 84 (528)
.+++.|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|.
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCc
Confidence 367899999999999999999999999999999999999999999999999998753 367999999999999999999
Q ss_pred ccccccceeeecCCceeEecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhhc-----CCCCCceEEEEeee
Q 009697 85 NRATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKA-----GVAQDTFVLCRIFQ 159 (528)
Q Consensus 85 nRatggGyWK~tGk~k~I~~~g~vVG~KKtLvFy~Grap~g~kT~WvMhEYrL~~~~l~~a-----g~~qd~~VLCRIf~ 159 (528)
+|+|++||||+||++++|..+|++||+||+|+||.|++|++.||+|+||||+|.+...... ....++|||||||+
T Consensus 88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 9999999999999999999889999999999999999999999999999999998753211 12357899999999
Q ss_pred cCC
Q 009697 160 KSG 162 (528)
Q Consensus 160 K~~ 162 (528)
|++
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 974
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.4e-53 Score=399.20 Aligned_cols=157 Identities=48% Similarity=0.912 Sum_probs=132.4
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCcccccCCCCcceeeeeccccccCCCCccc
Q 009697 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (528)
Q Consensus 6 ~~~~LPPGfRF~PTDEELI~~YLkrKi~G~plp~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFs~r~kK~~~G~R~n 85 (528)
+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+|||||++++||++|.|.+
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 5689999999999999999999999999999999999999999999999999874 34789999999999999999999
Q ss_pred cccccceeeecCCceeEecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhhcCCCCCceEEEEeeecCCCC
Q 009697 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSG 164 (528)
Q Consensus 86 RatggGyWK~tGk~k~I~~~g~vVG~KKtLvFy~Grap~g~kT~WvMhEYrL~~~~l~~ag~~qd~~VLCRIf~K~~~g 164 (528)
|+|++||||+||++++|..++++||+||+|+||.|++|++.||+|+||||+|...........+++|||||||+|++..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999998899999999999999999999999999999999987522222345899999999998653
No 3
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=12.30 E-value=1.2e+02 Score=19.94 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.1
Q ss_pred cCCCCcccccccCCCChhh
Q 009697 379 SEQKPDIVKSESDVKYPFL 397 (528)
Q Consensus 379 s~~~~~~~~~~~~~~~~~~ 397 (528)
|.-+|++.+|.++++|--+
T Consensus 4 s~lnp~akef~pgvkygni 22 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGNI 22 (26)
T ss_dssp CSSCTTCCCCCTTSCTTCC
T ss_pred ccCCcchhhcCCCceecce
Confidence 4458899999999999544
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=10.51 E-value=1.3e+02 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred CCCceeCC-ChHHHHHHHHHHHhcCCCCC
Q 009697 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (528)
Q Consensus 11 PPGfRF~P-TDEELI~~YLkrKi~G~plp 38 (528)
|.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 66899998 9999888 699999887663
No 5
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=10.11 E-value=1.6e+02 Score=27.76 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.2
Q ss_pred cceeeecC-CceeEecCCeeEEEEEEEEe
Q 009697 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (528)
Q Consensus 90 gGyWK~tG-k~k~I~~~g~vVG~KKtLvF 117 (528)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45699999 77889899999999887754
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.28 E-value=2.2e+02 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.2
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHH
Q 009697 7 STSLAPGFRFHPTDEELVRYYLKRK 31 (528)
Q Consensus 7 ~~~LPPGfRF~PTDEELI~~YLkrK 31 (528)
++.-+-|..+.||++|+|.+=..++
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ 176 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQ 176 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC--
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3455569999999999999855443
No 7
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=5.80 E-value=4.8e+02 Score=22.19 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCeeecCCCCCCCCCCCccc
Q 009697 17 HPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKS 59 (528)
Q Consensus 17 ~PTDEELI~~YLkrKi~G~plp~~~I~evDVY~~ePWdLP~~~ 59 (528)
|-|--||++--...-..|+|+|. +.|+-+..|-++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 67888888866667789999986 5688889999998754
No 8
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=4.90 E-value=9.9e+02 Score=25.14 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=27.6
Q ss_pred EEEEEeecCCCCCCCccCeEEEEEEeC--CCc--hhhcCCCCCceEEEEe
Q 009697 112 KKTLVYHMGRAPHGERTNWVMHEYRLT--DDD--LEKAGVAQDTFVLCRI 157 (528)
Q Consensus 112 KKtLvFy~Grap~g~kT~WvMhEYrL~--~~~--l~~ag~~qd~~VLCRI 157 (528)
.-+++||..|..++.|. ||||. ... +.......+-+|||+.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 66899999887777777 88887 332 2122234577888876
No 9
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=4.87 E-value=3e+02 Score=22.57 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeecCCCC
Q 009697 21 EELVRYYLKRKVCHRSLRFNPICVTDIYK 49 (528)
Q Consensus 21 EELI~~YLkrKi~G~plp~~~I~evDVY~ 49 (528)
..+ ..||++++.|+|+.-.-+..+++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 444 5689999999998655444466643
No 10
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=4.71 E-value=2.4e+02 Score=27.47 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=14.5
Q ss_pred CCCCCceeC-CChHHHHHHHH
Q 009697 9 SLAPGFRFH-PTDEELVRYYL 28 (528)
Q Consensus 9 ~LPPGfRF~-PTDEELI~~YL 28 (528)
-+|| |.|. ||+++|+.||-
T Consensus 97 v~~P-~y~~~~s~~~l~~~f~ 116 (288)
T 2nuw_A 97 SHSP-YYFPRLPEKFLAKYYE 116 (288)
T ss_dssp ECCC-CSSCSCCHHHHHHHHH
T ss_pred EcCC-cCCCCCCHHHHHHHHH
Confidence 3455 4588 99999999873
Done!