BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009700
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/519 (73%), Positives = 436/519 (84%), Gaps = 3/519 (0%)
Query: 1 MSLRPGSRTEVRKKSYKTGVXXXXXXXXXXXNLVEIRKNKREDSLLKKRREGLILQSQPV 60
MSLRP R EVR+ YK V N+VEIRK++RE+SLLKKRREGL Q+
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 TEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF 120
A ++KKLES+P+M+ GV S+++ LQLEATTQFRKLLSIER PPIEEVI++GVVPRF
Sbjct: 63 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 121 VEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVW 180
V+FL R D PQLQFEAAWALTNIASGTSE+T+VVI+HGAVP FV+LLGS+SDDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240
ALGNVAGDSP CRDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP F+Q
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
RPAL AL LI S+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH S +V
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360
L+PALRTVGNIVTGDD QTQC+ID+Q LP L LLTQN KKSIKKEACWTISNITAG++
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420
QIQAVI A II PLV LLQ AEF++KKEA+WAISNATSGG+ +QI++LVS+GCIKPLCDL
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422
Query: 421 LVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480
L+CPD RIVTVCLEGLENILK+GE DK + NV+S+MIDE +GL+KIENLQSHDNNE
Sbjct: 423 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482
Query: 481 IYEKAVKLLERYWVEEEDDEQNIPDGNNPE---FNFGTG 516
IYEKAVK+LE YW++EEDD P+ F+FG G
Sbjct: 483 IYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQG 521
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/447 (77%), Positives = 392/447 (87%), Gaps = 3/447 (0%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+P+M+ GV S+++ LQLEATTQFRKLLSIER PPIEEVI++GVVPRFV+FL R D PQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFEAAWALTNIASGTSE+T+VVI+HGAVP FV+LLGS+SDDVREQAVWALGNVAGDSP C
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF 252
RDLVL++GAL+PLLAQLNEH+KLSMLRNATWTLSNFCRGKP F+Q RPAL AL LI
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH S +VL+PALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
TGDD QTQC+ID+Q LP L LLTQN KKSIKKEACWTISNITAG++ QIQAVI A II
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432
PLV LLQ AEF++KKEA+WAISNATSGG+ +QI++LVS+GCIKPLCDLL+CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 433 LEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492
LEGLENILK+GE DK + NV+S+MIDE +GL+KIENLQSHDNNEIYEKAVK+LE Y
Sbjct: 397 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 456
Query: 493 WVEEEDDEQNIPDGNNPE---FNFGTG 516
W++EEDD P+ F+FG G
Sbjct: 457 WMDEEDDTMGATTVAAPQGATFDFGQG 483
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/425 (60%), Positives = 310/425 (72%), Gaps = 3/425 (0%)
Query: 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GVVPRFVEFLDRHDLPQLQFE 135
M++ + S++ QL AT +FRKLLS E PPI+EVI GVV RFVEFL R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195
+AW LTNIASG S TR+VI+ GAVP F++LL S +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSS 254
VL L PLL ++ ++L+M RNA W LSN CRGK P P F +V P L L L+F S
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 255 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL+H+ V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 315 DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374
DD QTQ VI N + L + K+SIKKEACWTISNITAG+R+QIQ VI+ANI L
Sbjct: 265 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLE 434
+ +LQ AEF +KEA+WAI+NATSGG+ EQI++LV GCIKPLCDLL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 435 GLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494
GLENIL++GE + + T N Y +I+E GLDKIE LQSH+N EIY+KA L+E Y+
Sbjct: 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443
Query: 495 EEEDD 499
E++D
Sbjct: 444 TEDED 448
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/425 (60%), Positives = 310/425 (72%), Gaps = 3/425 (0%)
Query: 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GVVPRFVEFLDRHDLPQLQFE 135
M++ + S++ QL AT +FRKLLS E PPI+EVI GVV RFVEFL R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195
+AW LTNIASG S TR+VI+ GAVP F++LL S +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSS 254
VL L PLL ++ ++L+M RNA W LSN CRGK P P F +V P L L L+F S
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 255 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL+H+ V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 315 DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374
DD QTQ VI N + L + K+SIKKEACWTISNITAG+R+QIQ VI+ANI L
Sbjct: 262 DDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLE 434
+ +LQ AEF +KEA+WAI+NATSGG+ EQI++LV GCIKPLCDLL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 435 GLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494
GLENIL++GE + + T N Y +I+E GLDKIE LQSH+N EIY+KA L+E Y+
Sbjct: 381 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 440
Query: 495 EEEDD 499
E++D
Sbjct: 441 TEDED 445
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 478 bits (1230), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/493 (53%), Positives = 340/493 (68%), Gaps = 19/493 (3%)
Query: 34 VEIRKNKREDSLLKKRR-----EGLILQSQPVTEANASIEKKLES-----IPSMVQGVLS 83
VE+RK KR+++L K+R +G S E++ S +++ S +P M Q + S
Sbjct: 41 VELRKAKRDEALAKRRNFIPPTDGA--DSDEEDESSVSADQQFYSQLQQELPQMTQQLNS 98
Query: 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNI 143
++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ + LQ EAAWALTNI
Sbjct: 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158
Query: 144 ASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALM 203
ASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS RD VL A+
Sbjct: 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 218
Query: 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDA 262
P+L N + K S++R ATWTLSN CRGK P P + V AL L LI+S D E L DA
Sbjct: 219 PILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277
Query: 263 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322
CWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGNIVTG+D QTQ V
Sbjct: 278 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 337
Query: 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382
I+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+I PLV LL+ AE
Sbjct: 338 INAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396
Query: 383 FEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440
++ KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI+ V L+ LENIL
Sbjct: 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
Query: 441 KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED-- 498
K+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K++E Y+ EEED
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 516
Query: 499 DEQNIPDGNNPEF 511
DE P F
Sbjct: 517 DETMAPQNAGNTF 529
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/447 (56%), Positives = 317/447 (70%), Gaps = 7/447 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIF 252
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
TG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+I
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVT 430
PLV LL+ AE + KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 431 VCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490
V L+ LENILK+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K++E
Sbjct: 360 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 491 RYWVEEED--DEQNIPDGNNPEFNFGT 515
Y+ EEED DE P F FG+
Sbjct: 420 TYFGEEEDAVDETMAPQNAGNTFGFGS 446
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/443 (56%), Positives = 314/443 (70%), Gaps = 7/443 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIF 252
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
TG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+I
Sbjct: 241 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVT 430
PLV LL+ AE + KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 431 VCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490
V L+ LENILK+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K++E
Sbjct: 360 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 491 RYWVEEED--DEQNIPDGNNPEF 511
Y+ EEED DE P F
Sbjct: 420 TYFGEEEDAVDETMAPQNAGNTF 442
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/423 (57%), Positives = 307/423 (72%), Gaps = 5/423 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIF 252
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
TG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+I
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVT 430
PLV LL+ AE++ KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 431 VCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490
V L+ LENILK+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K++E
Sbjct: 359 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 491 RYW 493
Y+
Sbjct: 419 TYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/423 (57%), Positives = 307/423 (72%), Gaps = 5/423 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIF 252
D VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
TG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+I
Sbjct: 240 TGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVT 430
PLV LL+ AE++ KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 431 VCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490
V L+ LENI+K+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K++E
Sbjct: 359 VTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 491 RYW 493
Y+
Sbjct: 419 TYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/425 (57%), Positives = 307/425 (72%), Gaps = 5/425 (1%)
Query: 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ 131
+ +P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191
LQ EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 192 CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHL 250
RD VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI 370
IVTG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 371 IAPLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRI 428
I PLV LL+ AE + KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKL 488
+ V L+ LENILK+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K+
Sbjct: 359 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 489 LERYW 493
+E Y+
Sbjct: 419 IETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/425 (57%), Positives = 307/425 (72%), Gaps = 5/425 (1%)
Query: 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ 131
+ +P M Q + S++ QL AT +FR++LS E PPI+ VI+AGVVPR VEF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191
LQ EAAWALTNIASGTS T+VV++ AVP F+QLL + S +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 192 CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHL 250
RD VL A+ P+L N + K S++R ATWTLSN CRGK P P + V AL L L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H ST V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI 370
IVTG+D QTQ VI+ LP L +LL + K++IKKEACWTISNITAG+ QIQAVI+AN+
Sbjct: 240 IVTGNDLQTQVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 371 IAPLVYLLQHAEFEVKKEASWAISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRI 428
I PLV LL+ AE + KKEA WAISNA+SGG + + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKL 488
+ V L+ LENILK+GEADKEA N ++ I++ G++KI N Q ++N++IYEKA K+
Sbjct: 359 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 489 LERYW 493
+E Y+
Sbjct: 419 IETYF 423
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/492 (47%), Positives = 321/492 (65%), Gaps = 22/492 (4%)
Query: 34 VEIRKNKREDSLLKKRREGLILQ--SQPVTEANASIEKKLESIPSMVQGVLSENSGLQLE 91
VE+RK K+++ +LK+R + P+ E + S+ +V+G+ S N QL+
Sbjct: 36 VELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQ 95
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +QFE+AWALTNIASGTSE T
Sbjct: 96 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN- 210
+ V++ GA+P F+ LL S + EQAVWALGN+AG + RDLV+ HGA+ PLLA L
Sbjct: 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAV 215
Query: 211 -EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWAL 266
+ S L+ LRN TWTLSN CR K PA P D V L L L+ +D EVL D+CWA+
Sbjct: 216 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275
Query: 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ 326
SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR +GNIVTG D QTQ VID
Sbjct: 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335
Query: 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386
L LLT N K +I+KEA WT+SNITAG + QIQ V+ ++ LV +L A+F+ +
Sbjct: 336 ALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394
Query: 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL----KI 442
K A+WAI+N TSGGT EQI +LV G I+PL +LL D +I+ V L+ + NI K+
Sbjct: 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454
Query: 443 GEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW-VEEEDDEQ 501
GE +K S MI+EC GLDKIE LQ H+N +Y+ ++ L+E+Y+ VEEE+D+
Sbjct: 455 GETEK---------LSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQN 505
Query: 502 NIPDGNNPEFNF 513
+P+ + F F
Sbjct: 506 VVPETTSEGFAF 517
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 403 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 453
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 454 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 484
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 467
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 468 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 373 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 423
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 424 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 454
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 467
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 468 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 467
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 468 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/451 (50%), Positives = 304/451 (67%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 417
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + F F
Sbjct: 418 ASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 448
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/451 (49%), Positives = 300/451 (66%), Gaps = 20/451 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ +GA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ D EVL D CWA+SYL+DG N++I V++ GV P+LV+LL S ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA WA++N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ+H+N +Y+
Sbjct: 368 IILVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQNHENESVYK 418
Query: 484 KAVKLLERYW-VEEEDDEQNIPDGNNPEFNF 513
++ L+E+Y+ VEEE+D+ +P+ + + F
Sbjct: 419 ASLSLIEKYFSVEEEEDQNVVPETTSEGYTF 449
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 401 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 451
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 452 ASLNLIEKYF 461
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 393 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 443
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 444 ASLNLIEKYF 453
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 417
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 418 ASLNLIEKYF 427
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 416
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 417 ASLNLIEKYF 426
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 416
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 417 ASLNLIEKYF 426
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 417
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 418 ASLNLIEKYF 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 412
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 413 ASLNLIEKYF 422
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 291/430 (67%), Gaps = 19/430 (4%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
S+ +V+G+ S N QL+AT RKLLS E+ PPI+ +IRAG++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192
QFE+AWALTNIASGTSE T+ V++ GA+P F+ LL S + EQAVWALGN+AGD +
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 193 RDLVLSHGALMPLLAQLN--EHSKLS--MLRNATWTLSNFCRGKPPA-PFDQVRPALAAL 247
RDLV+ HGA+ PLLA L + S L+ LRN TWTLSN CR K PA P D V L L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 248 QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307
L+ +D EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL + ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367
+GNIVTG D QTQ VID L LLT N K +I+KEA WT+SNITAG + QIQ V+
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427
++ LV +L A+F+ +KEA+WAI+N TSGGT EQI +LV G I+PL +LL D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 428 IVTVCLEGLENIL----KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYE 483
I+ V L+ + NI K+GE +K S MI+EC GLDKIE LQ H+N +Y+
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQRHENESVYK 412
Query: 484 KAVKLLERYW 493
++ L+E+Y+
Sbjct: 413 ASLNLIEKYF 422
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 129/224 (57%), Gaps = 14/224 (6%)
Query: 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328
LSDG N++IQAVI+AG P LV+LL + +L AL + NI +G + Q Q VID L
Sbjct: 40 LSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388
P L QLL+ + + I +EA W +SNI +G QIQAVI+A + LV LL ++ +E
Sbjct: 99 PALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKE 448
A WA+SN SGG EQIQ ++ G + L LL P+ +I+ L L NI G K+
Sbjct: 158 ALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 449 AGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492
A + E L+K+E LQSH+N +I ++A + LE+
Sbjct: 217 A-----------VKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 2/197 (1%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
AL AL L+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL+ + + I +EA W +SNI +G QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422
QAVI+A + LV LL ++ +EA WA+SN SGG EQ Q + G ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 232
Query: 423 CPDPRIVTVCLEGLENI 439
+ +I E LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +F ++LS + I+ VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EA WAL+NIASG +E + VI+ GA+P VQLL S ++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG---KPPAPFDQVRPALAALQHL 250
V+ GAL P L QL +L+ A W LSN G + A D AL AL L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300
+ S +E++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 128/239 (53%), Gaps = 11/239 (4%)
Query: 160 VPKFVQLLGSASDDVREQ--AVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSM 217
+P+ Q L S DD++EQ A + D V+ GAL P L QL +
Sbjct: 14 LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQI 70
Query: 218 LRNATWTLSNFCRG---KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274
L+ A W LSN G + A D AL AL L+ S +E++L +A WALS ++ G N
Sbjct: 71 LQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 275 DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334
++IQAVI+AG P LV+LL + +L AL + NI +G + Q Q VID LP L QL
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
L+ + + I +EA W +SNI +G Q QAV EA + L L H +++KEA A+
Sbjct: 189 LS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
++P++VQ + S N + EA + S I+ VI AG +P V+ L + L
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWAL 182
Q EA WAL+NIASG +E + V E GA+ K QL ++ ++++A AL
Sbjct: 198 Q-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345
P++V+ L L ALR + I +G + Q Q VID LP L QLL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405
EA W +SNI +G QIQAVI+A + LV LL ++ +EA WA+SN SGG EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 406 QFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD 465
Q ++ G + L LL P+ +I+ L L NI G K+A + E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA-----------VKEAG 180
Query: 466 GLDKIENLQSHDNNEIYEKAVKLLERY 492
L+K+E LQSH+N +I ++A + LE+
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 106/187 (56%), Gaps = 2/187 (1%)
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D++ L A LS ++ G N++IQAVI+AG P LV+LL + +L AL + NI
Sbjct: 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
+G + Q Q VID LP L QLL+ + + I +EA W +SNI +G QIQAVI+A +
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432
LV LL ++ +EA WA+SN SGG EQ Q + G ++ L L + +I
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Query: 433 LEGLENI 439
E LE +
Sbjct: 201 QEALEKL 207
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
AL AL L+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL+ + + I +EA W +SNI +G Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
QAV EA + L L H +++KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERC--PPIEEVIRAGVVPRFVEFLDRHDLPQ 131
+P MVQ + NS Q E + RKL I I+ VI AG +P V+ L +
Sbjct: 14 LPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191
LQ EA WAL+NIASG +E + VI+ GA+P VQLL S ++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 192 CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231
V+ GAL P L QL +L+ A W LSN G
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASG 168
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312
S D++ L A LS ++ G N++IQAVI+AG P LV+LL + +L AL + NI
Sbjct: 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82
Query: 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372
+G + Q Q VID LP L QLL+ + + I +EA W +SNI +G QIQAVI+A +
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432
LV LL ++ +EA WA+SN SGG EQ Q + G L L P+ +I
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
Query: 433 LEGLENI 439
E LE I
Sbjct: 201 QEALEKI 207
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 13/206 (6%)
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345
P++V+ L L ALR + I +G + Q Q VID LP L QLL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405
EA W +SNI +G QIQAVI+A + LV LL ++ +EA WA+SN SGG EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 406 QFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD 465
Q ++ G + L LL P+ +I+ L L NI G K+A + E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA-----------VKEAG 180
Query: 466 GLDKIENLQSHDNNEIYEKAVKLLER 491
+E LQS N +I ++A + LE+
Sbjct: 181 AEPALEQLQSSPNEKIQKEAQEALEK 206
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
AL AL L+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL+ + + I +EA W +SNI +G Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
QAV EA L L +++KEA A+
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 102/202 (50%), Gaps = 14/202 (6%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERC--PPIEEVIRAGVVPRFVEFLDRHDLPQ 131
+P MVQ + NS Q E + RKL I I+ VI AG +P V+ L +
Sbjct: 14 LPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191
LQ EA WAL+NIASG +E + VI+ GA+P VQLL S ++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 192 CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG----KPPAPFDQVRPALAAL 247
V+ GAL P L QL +L+ A W LSN G K PAL L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 248 QHLIFSSDEEVLTDACWALSYL 269
Q S +E++ +A AL +
Sbjct: 189 QS---SPNEKIQKEAQEALEKI 207
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQL 132
++P++VQ + S N + EA + S I+ VI AG +P V+ L + L
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWAL 182
Q EA WAL+NIASG +E + V E GA P QL S ++ ++++A AL
Sbjct: 156 Q-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345
P++ + L + A R I++ + Q Q VID LP L QLL+ + + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405
EA W +SNI +G QIQAVI+A + LV LL ++ +EA WA+SN SGG EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI 131
Query: 406 QFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD 465
Q ++ G + L LL P+ +I+ L L NI G K+A + E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA-----------VKEAG 180
Query: 466 GLDKIENLQSHDNNEIYEKAVKLLERY 492
L+K+E LQSH+N +I ++A + LE+
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328
LSDG N++IQAVI+AG P LV+LL + +L AL + NI +G + Q Q VID L
Sbjct: 40 LSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388
P L QLL+ + + I +EA W +SNI +G QIQAVI+A + LV LL ++ +E
Sbjct: 99 PALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
A WA+SN SGG EQ Q + G ++ L L + +I E LE +
Sbjct: 158 ALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302
AL AL L+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362
AL + NI +G + Q Q VID LP L QLL+ + + I +EA W +SNI +G Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393
QAV EA + L L H +++KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 3/158 (1%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQ 133
+P M Q + S++ QL AT +F ++LS + I+ VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193
EA WAL+NIASG +E + VI+ GA+P VQLL S ++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231
V+ GAL P L QL +L+ A W LSN G
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASG 168
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 219 RNATWTLSNFCRGKPPAPFDQVRPA--LAALQHLIFSSDEEVLTDACWALSYLSDGTNDK 276
+ A L+ G P + + A + L L+ S+D EV +A AL+ ++ G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 277 IQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT 336
I+A+++AG LV+LL + + V A R + NI +G D + ++D G+ L +LLT
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 337 QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396
+ ++KEA ++NI +G I+A+++A + LV LL + EV+KEA+ A++N
Sbjct: 139 -STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 397 TSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENI 439
SG T I+ +V G ++ L LL D + LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 130/259 (50%), Gaps = 29/259 (11%)
Query: 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306
L L+ S+D E +A L+ ++ G I+A+++AG LV+LL + + V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
+ NI +G D + ++D G+ L +LLT + ++KEA ++NI +G I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 367 EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP 426
+A + LV LL + EV+KEA+ A++N S G E I+ +V G ++ L LL D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 427 RIVTVCLEGLENILKIGEADKEAGSTTANVYS------EMIDECDGLDKIENLQSHDNNE 480
E KEA AN+ S + I + G++ ++ L + ++E
Sbjct: 185 -----------------EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227
Query: 481 IYEKAVKLLERY----WVE 495
+ ++A + LE W+E
Sbjct: 228 VQKEAQRALENIKSGGWLE 246
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--IEEVIRAGVVPRFVEFLDRHDLPQ 131
+ +V+ + S +S Q EA R L I P I+ ++ AG V V+ L D +
Sbjct: 4 VEKLVKLLTSTDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SE 59
Query: 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA-GDSP 190
+Q EAA AL NIASG E + +++ G V V+LL S +V+++A AL N+A G
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA---- 246
+ + +V + G + +L +L + + + A L+N G P + ++ + A
Sbjct: 120 AIKAIVDAGG--VEVLVKLLTSTDSEVQKEAARALANIASG----PDEAIKAIVDAGGVE 173
Query: 247 -LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305
L L+ S+D EV +A AL+ ++ G I+A+++AG L +LL + + V A
Sbjct: 174 VLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233
Query: 306 RTVGNIVTG 314
R + NI +G
Sbjct: 234 RALENIKSG 242
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195
A A +I G + R H A+P + L+ S V+E W +G +A D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID- 447
Query: 196 VLSH--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG---KPPAPFDQVRPAL 244
H G + L L +H K++ N +WT+ N P+P PAL
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYNFYPAL 499
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195
A A +I G + R H A+P + L+ S V+E W +G +A D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID- 447
Query: 196 VLSH--GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG---KPPAPFDQVRPAL 244
H G + L L +H K++ N +WT+ N P+P PAL
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYNFYPAL 499
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 175 REQAVWALGNV-AGDSPS-CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232
R+ AV A G + G PS + LV+ MP L +L + + + A WT+ C
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 233 PPAPFDQVRPALAALQHLI--FSSDEEVLTDACWALSYLSDG 272
P A + V A LQ LI S++ V ++ CWA S L++
Sbjct: 440 PEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 116 VVPRFVEFLDRH-DLPQLQFE--AAWALTNIASGT--SEHTRVVIEHGAVPKFVQLLGSA 170
+VP + F+ H P ++ A A I G S+ +VI+ A+P ++L+
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDP 420
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLSNF 228
S VR+ A W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 421 SVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 229 CRG 231
Sbjct: 478 AEA 480
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ 239
+AL +A +P ++ M +L+ N KL+ L NF F
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292
V P L + +L+ DE V A AL +L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 42/269 (15%)
Query: 132 LQFEAAWALTNIASG-TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA--GD 188
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 189 SPSCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246
S + L V S ALM ++ + S L + +A W LS C + A V ALA
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 334
Query: 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306
L L+Y S TN A+IE+G LR
Sbjct: 335 L---------------VGTLTYRSQ-TN--TLAIIESG-----------------GGILR 359
Query: 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A + +A+
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 418
Query: 367 EANIIAPLVYLLQHAEFEVKKEASWAISN 395
+ ++ L L+ + ++ A+ N
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 42/269 (15%)
Query: 132 LQFEAAWALTNIASG-TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA--GD 188
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 189 SPSCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246
S + L V S ALM ++ + S L + +A W LS C + A V ALA
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 220
Query: 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306
L + L+ + A+IE+G LR
Sbjct: 221 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 245
Query: 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A + +A+
Sbjct: 246 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 304
Query: 367 EANIIAPLVYLLQHAEFEVKKEASWAISN 395
+ ++ L L+ + ++ A+ N
Sbjct: 305 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 42/269 (15%)
Query: 132 LQFEAAWALTNIASG-TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA--GD 188
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 189 SPSCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246
S + L V S ALM ++ + S L + +A W LS C + A V ALA
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306
L + L+ + A+IE+G LR
Sbjct: 219 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 243
Query: 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366
V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A + +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 367 EANIIAPLVYLLQHAEFEVKKEASWAISN 395
+ ++ L L+ + ++ A+ N
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 44/270 (16%)
Query: 132 LQFEAAWALTNIASG-TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA--GD 188
L+ A ALTN+ G + + G + V L S S+D+++ L N++ D
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 189 SPSCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246
S + L V S ALM ++ + S L + +A W LS C + A V ALA
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 247 L-QHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305
L L + S L A+IE+G L
Sbjct: 219 LVGTLTYRSQTNTL-------------------AIIESG-----------------GGIL 242
Query: 306 RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365
R V +++ ++ Q + +N L L Q L +++ +I AC T+ N++A + +A+
Sbjct: 243 RNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEAL 301
Query: 366 IEANIIAPLVYLLQHAEFEVKKEASWAISN 395
+ ++ L L+ + ++ A+ N
Sbjct: 302 WDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 31/164 (18%)
Query: 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCP----PIEEVIRAGVVPRFVEFL----- 124
IP++V+ + N ++AT + L++ CP P++E A V+PR V+ L
Sbjct: 359 IPAIVKLLNQPNQWPLVKATIGLIRNLAL--CPANHAPLQE---AAVIPRLVQLLVKAHQ 413
Query: 125 --DRHDLPQLQ--FEAAWALTNIASGTSEHTRV----------VIEHGAVPKFVQLLGSA 170
RH Q + + I G + + + +P FVQLL S+
Sbjct: 414 DAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSS 473
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK 214
++++ A L +A D + D + + GA PL+ L HS+
Sbjct: 474 VENIQRVAAGVLCELAQDKEAA-DAIDAEGASAPLMELL--HSR 514
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 129 LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
+ Q Q A TN+ T+ V+ + +P + LL + DVR A +A+ D
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189
Query: 189 SPSCRD 194
+ RD
Sbjct: 190 NSDIRD 195
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 384 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 443
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 444 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 387 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 446
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 447 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 371 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 430
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 431 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 375 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 434
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 435 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 384 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 443
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 444 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 389 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 448
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 449 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 371 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 430
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 431 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 388 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 447
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 448 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 390 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 449
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 450 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 373 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 432
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 433 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 388 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 447
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 448 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 116 VVPRFVEFLDRH-DLPQLQFE--AAWALTNIASGT--SEHTRVVIEHGAVPKFVQLLGSA 170
+VP + F+ H P ++ A A I G S+ +VI+ A+P ++L+
Sbjct: 238 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDP 295
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLSNF 228
S VR+ A W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 296 SVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 229 CRGKPPA---PFDQVRPALAAL 247
A DQ PA L
Sbjct: 353 AEAAYEAADVADDQEEPATYCL 374
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 116 VVPRFVEFLDRH-DLPQLQFE--AAWALTNIASGT--SEHTRVVIEHGAVPKFVQLLGSA 170
+VP + F+ H P ++ A A I G S+ +VI+ A+P ++L+
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDP 420
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLSNF 228
S VR+ A W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 421 SVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 229 CRGKPPA---PFDQVRPALAAL 247
A DQ PA L
Sbjct: 478 AEAAYEAADVADDQEEPATYCL 499
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDG-------LD 468
P D+L+ P L G+ +G A A T ++ +++ D L+
Sbjct: 168 PEHDVLLAGFP-CQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAXFVLE 226
Query: 469 KIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQNIPD 505
++NL+SHD + + + L+ + D E N PD
Sbjct: 227 NVKNLKSHDKGKTFRIIXQTLDELGYDVADAEDNGPD 263
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 116 VVPRFVEFLDRH-DLPQLQFE--AAWALTNIASGT--SEHTRVVIEHGAVPKFVQLLGSA 170
+VP + F+ H P ++ A A I G S+ +VI+ A+P ++L+
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDP 420
Query: 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLSNF 228
S VR+ A W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 421 SVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 229 CRGKPPA---PFDQVRPALAAL 247
A DQ PA L
Sbjct: 478 AEAAYEAADVADDQEEPATYCL 499
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 105 CPPIEEVIR-AGVVPRFVEFLDRHDL----------PQLQFEAAWALTNIASGTSE---- 149
CP +R G +PR V+ L R Q QF + I G +
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442
Query: 150 -----HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGD 188
H R+VI +P FVQLL S ++++ A L +A D
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
A T+ + I R + GV+PRF + R D+ +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQA 178
R +I G P+ V G D+++E+A
Sbjct: 119 RKIISRGFTPRAV---GRLHDELQERA 142
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
A T+ + I R + GV+PRF + R D+ +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQA 178
R +I G P+ V G D+++E+A
Sbjct: 135 RKIISRGFTPRAV---GRLHDELQERA 158
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDG-------LD 468
P D+L+ P L G+ +G A A T ++ +++ D L+
Sbjct: 106 PEHDVLLAGFP-CQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAXFVLE 164
Query: 469 KIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQNIPD 505
++NL+SHD + + + L+ + D E N PD
Sbjct: 165 NVKNLKSHDKGKTFRIIXQTLDELGYDVADAEDNGPD 201
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
A T+ + I R + GV+PRF + R D+ +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQA 178
R +I G P+ V G D+++E+A
Sbjct: 118 RKIISRGFTPRAV---GRLHDELQERA 141
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
A T+ + I R + GV+PRF + R D+ +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQA 178
R +I G P+ V G D+++E+A
Sbjct: 128 RKIISRGFTPRAV---GRLHDELQERA 151
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151
A T+ + I R + GV+PRF + R D+ +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 152 RVVIEHGAVPKFVQLLGSASDDVREQA 178
R +I G P+ V G D+++E+A
Sbjct: 126 RKIISRGFTPRAV---GRLHDELQERA 149
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166
H P+LQ EA + LT + + R+V G P +QL
Sbjct: 138 HRAPELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQL 177
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 116 VVPRFVEFLDRH-DLPQLQFE--AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172
+VP + F+ H P ++ A A +I G + + A+P ++L+ S
Sbjct: 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSV 422
Query: 173 DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLSNFCR 230
VR+ W +G + P + ++ L PLL L E ++ + N W S+
Sbjct: 423 VVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479
Query: 231 GKPPA---PFDQVRPALAAL 247
A DQ PA L
Sbjct: 480 AAYEAADVADDQEEPATYCL 499
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,835,900
Number of Sequences: 62578
Number of extensions: 589144
Number of successful extensions: 2315
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 123
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)