Query 009700
Match_columns 528
No_of_seqs 396 out of 2720
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 16:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 6E-91 1.3E-95 616.7 39.6 516 5-527 3-525 (526)
2 KOG0166 Karyopherin (importin) 100.0 1.9E-87 4E-92 642.8 50.5 508 9-527 5-514 (514)
3 KOG0166 Karyopherin (importin) 100.0 5.1E-44 1.1E-48 343.6 31.0 368 72-444 109-489 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.6E-43 3.6E-48 314.7 22.4 363 72-440 114-495 (526)
5 PLN03200 cellulose synthase-in 100.0 1.9E-40 4.2E-45 363.8 44.8 407 71-498 188-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.2E-38 2.6E-43 349.8 44.3 417 72-497 404-863 (2102)
7 KOG4224 Armadillo repeat prote 100.0 7.7E-30 1.7E-34 229.6 24.4 363 72-444 85-449 (550)
8 KOG4224 Armadillo repeat prote 100.0 3.8E-29 8.3E-34 225.1 25.1 364 70-444 124-496 (550)
9 PF05804 KAP: Kinesin-associat 100.0 9.6E-25 2.1E-29 222.9 38.5 390 75-492 253-647 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.9E-23 6.3E-28 212.1 36.3 360 72-447 290-655 (708)
11 KOG0168 Putative ubiquitin fus 99.9 1.2E-19 2.6E-24 180.1 29.1 389 74-477 169-655 (1051)
12 KOG1048 Neural adherens juncti 99.8 1.3E-17 2.9E-22 166.7 26.9 363 117-495 235-685 (717)
13 KOG2171 Karyopherin (importin) 99.8 2.7E-16 5.8E-21 162.9 32.2 363 74-446 120-509 (1075)
14 PF10508 Proteasom_PSMB: Prote 99.8 1.5E-15 3.4E-20 154.3 36.3 402 75-495 6-421 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 2.6E-15 5.7E-20 152.6 37.3 397 76-494 42-462 (503)
16 KOG1048 Neural adherens juncti 99.8 1.9E-16 4E-21 158.6 26.1 364 73-444 234-687 (717)
17 KOG2122 Beta-catenin-binding p 99.8 3.7E-16 8.1E-21 162.9 27.1 365 73-444 198-604 (2195)
18 KOG4500 Rho/Rac GTPase guanine 99.7 7.2E-16 1.6E-20 142.9 21.5 354 85-445 55-435 (604)
19 KOG4199 Uncharacterized conser 99.7 3.2E-14 6.9E-19 128.1 28.2 311 81-398 116-444 (461)
20 KOG2122 Beta-catenin-binding p 99.7 2.7E-15 5.9E-20 156.6 24.3 328 69-400 232-603 (2195)
21 KOG1222 Kinesin associated pro 99.7 6.7E-14 1.4E-18 131.7 29.5 377 85-488 276-657 (791)
22 KOG4500 Rho/Rac GTPase guanine 99.7 4.1E-14 9E-19 131.4 27.4 400 72-485 87-510 (604)
23 KOG1222 Kinesin associated pro 99.7 7.5E-13 1.6E-17 124.7 34.0 359 73-447 305-669 (791)
24 KOG4199 Uncharacterized conser 99.7 5.1E-13 1.1E-17 120.4 30.3 317 113-438 102-441 (461)
25 PRK09687 putative lyase; Provi 99.7 3.4E-14 7.5E-19 132.6 22.7 255 116-438 24-279 (280)
26 PRK09687 putative lyase; Provi 99.6 5.8E-14 1.3E-18 131.1 23.5 254 73-395 24-279 (280)
27 KOG2171 Karyopherin (importin) 99.6 2.1E-12 4.5E-17 134.5 35.0 391 75-490 82-500 (1075)
28 KOG1293 Proteins containing ar 99.6 3.9E-13 8.4E-18 131.6 26.9 365 77-444 14-536 (678)
29 PF04826 Arm_2: Armadillo-like 99.6 1.7E-13 3.7E-18 124.9 22.8 237 240-485 10-253 (254)
30 KOG2023 Nuclear transport rece 99.6 1.1E-13 2.5E-18 134.9 21.8 351 77-444 95-508 (885)
31 PF04826 Arm_2: Armadillo-like 99.6 1.3E-13 2.8E-18 125.6 19.8 196 112-314 9-206 (254)
32 KOG2023 Nuclear transport rece 99.6 8.9E-14 1.9E-18 135.6 18.8 350 73-443 129-548 (885)
33 PRK13800 putative oxidoreducta 99.6 2.2E-12 4.8E-17 140.8 29.9 275 73-438 622-896 (897)
34 PF01602 Adaptin_N: Adaptin N 99.5 3.4E-11 7.3E-16 125.6 32.4 328 73-443 43-371 (526)
35 PRK13800 putative oxidoreducta 99.5 1.3E-11 2.9E-16 134.7 29.1 277 113-490 619-895 (897)
36 cd00020 ARM Armadillo/beta-cat 99.5 6.5E-13 1.4E-17 108.9 14.2 119 110-230 2-120 (120)
37 PTZ00429 beta-adaptin; Provisi 99.5 7E-10 1.5E-14 116.1 37.8 293 73-398 33-326 (746)
38 PTZ00429 beta-adaptin; Provisi 99.5 5.9E-10 1.3E-14 116.6 36.7 260 73-359 69-329 (746)
39 PF01602 Adaptin_N: Adaptin N 99.5 1.6E-10 3.4E-15 120.6 32.3 327 76-444 8-336 (526)
40 cd00020 ARM Armadillo/beta-cat 99.5 1.8E-12 3.9E-17 106.2 14.0 118 280-398 3-120 (120)
41 cd00256 VATPase_H VATPase_H, r 99.4 3E-10 6.4E-15 110.4 28.9 323 158-494 53-425 (429)
42 KOG1293 Proteins containing ar 99.4 2E-10 4.4E-15 112.9 26.7 356 126-495 20-534 (678)
43 cd00256 VATPase_H VATPase_H, r 99.4 5.6E-10 1.2E-14 108.6 27.7 320 74-398 55-425 (429)
44 PF01749 IBB: Importin beta bi 99.4 2.1E-13 4.5E-18 104.6 3.3 89 6-94 3-96 (97)
45 KOG0168 Putative ubiquitin fus 99.4 2.4E-10 5.1E-15 115.0 23.7 342 73-422 212-653 (1051)
46 KOG1241 Karyopherin (importin) 99.3 7.1E-10 1.5E-14 110.6 26.1 364 82-461 227-681 (859)
47 KOG1241 Karyopherin (importin) 99.3 8.6E-10 1.9E-14 110.0 25.8 327 74-407 174-539 (859)
48 KOG0213 Splicing factor 3b, su 99.3 1E-10 2.2E-15 115.8 18.1 351 67-442 708-1066(1172)
49 KOG1059 Vesicle coat complex A 99.2 1E-07 2.2E-12 94.9 29.9 219 74-315 146-367 (877)
50 KOG2759 Vacuolar H+-ATPase V1 99.1 1.3E-08 2.7E-13 95.6 21.8 322 73-398 66-438 (442)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 1.4E-07 3E-12 94.9 30.3 326 116-447 23-405 (970)
52 KOG0946 ER-Golgi vesicle-tethe 99.1 2.7E-07 5.8E-12 92.9 30.4 324 72-401 22-402 (970)
53 KOG2759 Vacuolar H+-ATPase V1 99.1 7.9E-08 1.7E-12 90.4 24.9 280 201-494 115-438 (442)
54 KOG2160 Armadillo/beta-catenin 99.1 1.5E-08 3.2E-13 94.0 19.0 189 254-444 95-285 (342)
55 KOG2160 Armadillo/beta-catenin 99.0 2.6E-08 5.7E-13 92.4 19.0 186 83-271 94-282 (342)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 8.2E-09 1.8E-13 99.2 15.8 223 253-490 68-310 (312)
57 COG5181 HSH155 U2 snRNP splice 99.0 1.9E-09 4.1E-14 105.0 11.0 266 159-444 605-873 (975)
58 KOG1789 Endocytosis protein RM 99.0 3.6E-07 7.9E-12 94.4 26.8 329 87-423 1740-2141(2235)
59 COG5215 KAP95 Karyopherin (imp 99.0 2.7E-07 5.9E-12 89.7 24.1 355 73-441 322-711 (858)
60 PF03224 V-ATPase_H_N: V-ATPas 99.0 2E-08 4.3E-13 96.5 16.1 228 159-389 56-305 (312)
61 KOG1062 Vesicle coat complex A 99.0 7E-07 1.5E-11 90.3 26.9 297 75-400 110-453 (866)
62 COG5215 KAP95 Karyopherin (imp 99.0 2.1E-07 4.6E-12 90.3 22.3 364 82-461 231-681 (858)
63 KOG1517 Guanine nucleotide bin 98.9 1.1E-07 2.5E-12 98.1 20.0 270 87-367 451-743 (1387)
64 KOG1242 Protein containing ada 98.9 2.1E-06 4.5E-11 85.2 27.3 341 116-493 97-443 (569)
65 KOG1062 Vesicle coat complex A 98.9 3.2E-06 7E-11 85.7 27.3 352 20-405 21-421 (866)
66 KOG3678 SARM protein (with ste 98.8 3.9E-07 8.4E-12 86.5 18.3 273 107-396 172-450 (832)
67 KOG1061 Vesicle coat complex A 98.8 2.3E-06 5.1E-11 86.7 24.4 341 73-446 50-420 (734)
68 KOG0213 Splicing factor 3b, su 98.8 5E-06 1.1E-10 83.4 24.9 334 117-497 801-1145(1172)
69 KOG1824 TATA-binding protein-i 98.8 3.1E-06 6.7E-11 87.1 23.7 353 76-443 9-404 (1233)
70 KOG0212 Uncharacterized conser 98.7 1.1E-06 2.5E-11 85.4 19.0 320 112-445 81-410 (675)
71 KOG1061 Vesicle coat complex A 98.7 1.8E-06 3.8E-11 87.6 20.2 342 72-444 86-456 (734)
72 COG5181 HSH155 U2 snRNP splice 98.7 7.9E-06 1.7E-10 80.4 23.9 338 116-495 605-948 (975)
73 KOG4413 26S proteasome regulat 98.7 0.00012 2.5E-09 67.1 29.4 342 74-420 84-460 (524)
74 KOG3678 SARM protein (with ste 98.7 1.7E-06 3.6E-11 82.3 18.5 266 72-354 180-450 (832)
75 KOG1059 Vesicle coat complex A 98.7 4.1E-05 9E-10 76.9 27.8 256 116-401 145-404 (877)
76 KOG1517 Guanine nucleotide bin 98.6 2E-06 4.4E-11 89.2 18.2 245 74-322 474-741 (1387)
77 KOG1060 Vesicle coat complex A 98.6 4.7E-05 1E-09 77.3 27.0 300 73-406 109-466 (968)
78 COG5369 Uncharacterized conser 98.6 5.6E-07 1.2E-11 86.9 12.4 304 179-492 410-739 (743)
79 KOG1242 Protein containing ada 98.6 3E-05 6.5E-10 77.1 24.2 347 74-446 98-449 (569)
80 PF05536 Neurochondrin: Neuroc 98.6 9.4E-05 2E-09 76.0 28.7 380 73-471 6-457 (543)
81 KOG1824 TATA-binding protein-i 98.6 5.1E-05 1.1E-09 78.5 26.1 366 117-494 133-599 (1233)
82 TIGR02270 conserved hypothetic 98.6 2.3E-05 4.9E-10 77.2 22.8 241 73-398 55-296 (410)
83 COG5369 Uncharacterized conser 98.5 1.1E-06 2.4E-11 84.9 11.9 285 110-397 426-740 (743)
84 KOG1060 Vesicle coat complex A 98.5 0.00016 3.5E-09 73.5 27.3 171 75-270 38-208 (968)
85 KOG0211 Protein phosphatase 2A 98.5 3.8E-05 8.1E-10 80.4 23.8 379 74-489 278-659 (759)
86 KOG2973 Uncharacterized conser 98.5 3.4E-05 7.4E-10 70.0 19.5 268 117-398 5-314 (353)
87 TIGR02270 conserved hypothetic 98.4 5.6E-05 1.2E-09 74.5 22.1 243 116-442 55-297 (410)
88 KOG1789 Endocytosis protein RM 98.4 0.00027 5.9E-09 74.0 27.3 303 70-381 1769-2142(2235)
89 KOG2973 Uncharacterized conser 98.4 0.00019 4.2E-09 65.2 23.2 274 203-497 6-318 (353)
90 KOG1077 Vesicle coat complex A 98.4 0.00068 1.5E-08 68.3 28.8 289 117-433 113-425 (938)
91 PF14664 RICTOR_N: Rapamycin-i 98.4 3.5E-05 7.5E-10 75.0 19.9 314 75-398 28-364 (371)
92 COG1413 FOG: HEAT repeat [Ener 98.4 0.00023 5E-09 69.5 25.3 250 73-399 44-305 (335)
93 KOG4413 26S proteasome regulat 98.4 4E-05 8.7E-10 70.0 18.0 266 221-498 63-337 (524)
94 KOG1058 Vesicle coat complex C 98.4 0.00029 6.3E-09 71.4 25.5 92 385-497 375-466 (948)
95 KOG0211 Protein phosphatase 2A 98.4 9.1E-05 2E-09 77.6 22.9 384 76-495 241-626 (759)
96 PF12460 MMS19_C: RNAPII trans 98.3 0.0015 3.2E-08 65.6 30.2 347 75-445 2-398 (415)
97 KOG4646 Uncharacterized conser 98.3 1.4E-05 3E-10 63.2 11.5 131 71-209 15-146 (173)
98 KOG0212 Uncharacterized conser 98.3 0.00016 3.4E-09 71.0 21.0 316 72-403 84-449 (675)
99 PF14664 RICTOR_N: Rapamycin-i 98.3 0.0005 1.1E-08 67.0 24.6 313 160-493 27-363 (371)
100 KOG1240 Protein kinase contain 98.3 3.2E-05 6.9E-10 82.0 16.9 270 74-356 424-725 (1431)
101 KOG2259 Uncharacterized conser 98.3 4.2E-05 9E-10 76.2 16.5 222 163-400 203-441 (823)
102 PF00514 Arm: Armadillo/beta-c 98.3 1.8E-06 4E-11 54.9 4.8 41 147-187 1-41 (41)
103 KOG1077 Vesicle coat complex A 98.3 0.00029 6.3E-09 70.9 22.2 301 74-398 113-433 (938)
104 KOG0915 Uncharacterized conser 98.3 0.00012 2.5E-09 79.7 20.8 378 74-482 820-1233(1702)
105 KOG4646 Uncharacterized conser 98.3 1.8E-05 3.9E-10 62.6 11.0 115 115-232 16-130 (173)
106 PF00514 Arm: Armadillo/beta-c 98.2 2.5E-06 5.4E-11 54.3 5.2 41 358-398 1-41 (41)
107 COG1413 FOG: HEAT repeat [Ener 98.2 0.00028 6E-09 69.0 22.0 214 116-394 44-269 (335)
108 PF10165 Ric8: Guanine nucleot 98.2 0.00055 1.2E-08 68.9 23.0 253 107-360 14-341 (446)
109 PF05536 Neurochondrin: Neuroc 98.2 0.00031 6.8E-09 72.2 21.4 236 159-397 6-260 (543)
110 KOG0915 Uncharacterized conser 98.2 0.0025 5.3E-08 69.9 28.2 342 88-444 973-1347(1702)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00013 2.8E-09 66.5 16.0 230 123-356 157-428 (432)
112 KOG2259 Uncharacterized conser 98.1 6.1E-05 1.3E-09 75.0 14.4 220 205-443 203-441 (823)
113 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00029 6.2E-09 64.3 17.0 235 247-494 154-428 (432)
114 KOG1991 Nuclear transport rece 98.1 0.0059 1.3E-07 64.3 28.1 360 114-491 409-797 (1010)
115 KOG1240 Protein kinase contain 98.1 0.00016 3.6E-09 76.8 16.8 296 159-493 423-724 (1431)
116 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.6E-10 55.0 5.4 55 341-396 1-55 (55)
117 COG5096 Vesicle coat complex, 98.0 0.012 2.6E-07 61.6 28.4 140 74-231 57-196 (757)
118 PF13646 HEAT_2: HEAT repeats; 98.0 1.9E-05 4.2E-10 60.2 6.2 87 117-226 1-88 (88)
119 PF12348 CLASP_N: CLASP N term 98.0 0.00012 2.6E-09 67.1 12.6 186 252-445 17-210 (228)
120 PF12348 CLASP_N: CLASP N term 98.0 9E-05 2E-09 68.0 11.6 190 168-364 17-214 (228)
121 PF12755 Vac14_Fab1_bd: Vacuol 97.9 8E-05 1.7E-09 57.2 8.8 95 343-441 2-96 (97)
122 KOG0567 HEAT repeat-containing 97.9 0.0024 5.1E-08 57.2 18.8 245 83-398 16-280 (289)
123 PF13646 HEAT_2: HEAT repeats; 97.9 4.9E-05 1.1E-09 57.9 7.4 87 244-352 1-88 (88)
124 COG5096 Vesicle coat complex, 97.9 0.048 1E-06 57.3 31.1 169 81-272 28-196 (757)
125 COG5240 SEC21 Vesicle coat com 97.9 0.0014 3.1E-08 64.6 18.4 278 84-398 276-555 (898)
126 COG5240 SEC21 Vesicle coat com 97.8 0.0069 1.5E-07 60.0 22.1 279 137-440 248-554 (898)
127 KOG1943 Beta-tubulin folding c 97.8 0.01 2.2E-07 63.1 24.6 260 115-398 341-611 (1133)
128 KOG2734 Uncharacterized conser 97.8 0.0081 1.8E-07 57.7 21.2 240 92-336 104-371 (536)
129 KOG4535 HEAT and armadillo rep 97.7 0.00034 7.4E-09 67.4 11.1 298 86-398 269-603 (728)
130 KOG2734 Uncharacterized conser 97.7 0.017 3.7E-07 55.5 22.1 224 69-293 122-370 (536)
131 KOG2062 26S proteasome regulat 97.7 0.0039 8.4E-08 63.5 18.7 241 115-401 413-656 (929)
132 PF13513 HEAT_EZ: HEAT-like re 97.7 0.00019 4.1E-09 49.0 6.4 55 256-311 1-55 (55)
133 KOG1991 Nuclear transport rece 97.7 0.029 6.3E-07 59.4 24.7 344 85-444 431-851 (1010)
134 KOG4535 HEAT and armadillo rep 97.6 0.00037 8E-09 67.1 10.1 263 131-400 270-561 (728)
135 KOG2274 Predicted importin 9 [ 97.6 0.0077 1.7E-07 62.8 19.5 240 119-366 453-699 (1005)
136 PF12460 MMS19_C: RNAPII trans 97.6 0.037 8E-07 55.6 24.2 300 85-400 56-396 (415)
137 KOG1943 Beta-tubulin folding c 97.6 0.011 2.3E-07 63.1 20.0 257 158-438 341-608 (1133)
138 PF09759 Atx10homo_assoc: Spin 97.5 0.00078 1.7E-08 51.7 8.3 68 132-199 2-71 (102)
139 smart00185 ARM Armadillo/beta- 97.5 0.0003 6.6E-09 44.5 5.3 39 148-186 2-40 (41)
140 KOG1078 Vesicle coat complex C 97.5 0.01 2.3E-07 60.9 18.1 141 241-397 390-531 (865)
141 PF05918 API5: Apoptosis inhib 97.4 0.021 4.6E-07 58.0 20.1 296 118-445 26-349 (556)
142 KOG1248 Uncharacterized conser 97.4 0.063 1.4E-06 58.1 24.3 235 204-444 657-901 (1176)
143 KOG1058 Vesicle coat complex C 97.4 0.0099 2.1E-07 60.8 17.2 322 75-444 102-466 (948)
144 KOG1248 Uncharacterized conser 97.4 0.28 6.1E-06 53.4 32.4 184 250-446 662-861 (1176)
145 KOG1078 Vesicle coat complex C 97.4 0.18 3.9E-06 52.3 26.2 241 240-493 243-531 (865)
146 smart00185 ARM Armadillo/beta- 97.4 0.00047 1E-08 43.6 5.4 39 360-398 3-41 (41)
147 KOG2274 Predicted importin 9 [ 97.4 0.037 8E-07 58.0 21.0 313 83-409 461-791 (1005)
148 PF11841 DUF3361: Domain of un 97.3 0.011 2.3E-07 49.4 13.9 131 277-408 4-141 (160)
149 KOG1967 DNA repair/transcripti 97.3 0.0023 5E-08 66.7 11.9 187 161-353 818-1021(1030)
150 PF08569 Mo25: Mo25-like; Int 97.3 0.0075 1.6E-07 57.8 14.6 202 153-356 71-283 (335)
151 PF08569 Mo25: Mo25-like; Int 97.3 0.065 1.4E-06 51.5 20.7 203 278-492 70-281 (335)
152 PF12717 Cnd1: non-SMC mitotic 97.3 0.016 3.5E-07 50.6 15.0 91 130-231 2-93 (178)
153 PF10165 Ric8: Guanine nucleot 97.2 0.055 1.2E-06 54.6 20.3 231 82-315 42-339 (446)
154 KOG1020 Sister chromatid cohes 97.2 0.57 1.2E-05 52.4 33.2 397 74-495 818-1255(1692)
155 PF12717 Cnd1: non-SMC mitotic 97.2 0.026 5.6E-07 49.3 15.2 93 255-357 1-93 (178)
156 PF05004 IFRD: Interferon-rela 97.1 0.041 8.9E-07 52.5 17.7 192 74-271 45-257 (309)
157 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0021 4.5E-08 49.4 7.1 86 218-304 3-88 (97)
158 PF05918 API5: Apoptosis inhib 97.1 0.086 1.9E-06 53.7 20.4 124 170-311 34-160 (556)
159 KOG0567 HEAT repeat-containing 97.1 0.075 1.6E-06 47.9 17.3 226 74-355 38-279 (289)
160 KOG0414 Chromosome condensatio 97.0 0.0057 1.2E-07 65.6 11.3 162 114-296 918-1083(1251)
161 PRK14707 hypothetical protein; 97.0 0.97 2.1E-05 52.4 28.3 401 74-494 165-571 (2710)
162 KOG4151 Myosin assembly protei 97.0 0.037 8E-07 57.4 16.6 224 190-420 494-720 (748)
163 PF04078 Rcd1: Cell differenti 97.0 0.047 1E-06 49.5 15.0 186 255-443 8-220 (262)
164 PF09759 Atx10homo_assoc: Spin 96.9 0.0052 1.1E-07 47.2 7.7 68 300-367 2-70 (102)
165 PF05004 IFRD: Interferon-rela 96.9 0.064 1.4E-06 51.3 16.6 191 203-398 46-257 (309)
166 PRK14707 hypothetical protein; 96.8 1.5 3.2E-05 51.0 29.0 357 117-491 165-526 (2710)
167 KOG4151 Myosin assembly protei 96.7 0.078 1.7E-06 55.1 16.6 241 146-393 492-736 (748)
168 KOG0414 Chromosome condensatio 96.7 0.058 1.3E-06 58.3 15.8 147 239-401 916-1067(1251)
169 PF12719 Cnd3: Nuclear condens 96.7 0.25 5.3E-06 47.3 19.1 171 115-296 26-209 (298)
170 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0048 1E-07 48.7 6.0 71 412-493 43-114 (119)
171 PF11864 DUF3384: Domain of un 96.7 0.9 1.9E-05 46.4 29.8 286 87-398 5-330 (464)
172 KOG4653 Uncharacterized conser 96.7 0.04 8.6E-07 57.5 13.9 226 72-311 727-962 (982)
173 COG5656 SXM1 Importin, protein 96.7 0.12 2.7E-06 53.1 16.9 278 114-401 407-714 (970)
174 COG5098 Chromosome condensatio 96.6 0.043 9.4E-07 55.8 13.5 145 115-274 892-1040(1128)
175 PF11841 DUF3361: Domain of un 96.6 0.094 2E-06 43.9 13.5 125 192-317 3-135 (160)
176 COG5116 RPN2 26S proteasome re 96.6 0.14 3E-06 51.1 16.5 133 246-403 520-655 (926)
177 KOG4653 Uncharacterized conser 96.6 0.078 1.7E-06 55.4 15.4 220 211-441 737-964 (982)
178 KOG3036 Protein involved in ce 96.6 0.14 3.1E-06 45.5 14.8 144 86-231 93-248 (293)
179 KOG2062 26S proteasome regulat 96.6 0.28 6.1E-06 50.6 18.8 167 288-491 523-691 (929)
180 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0041 8.9E-08 49.1 4.8 73 326-398 43-115 (119)
181 KOG3665 ZYG-1-like serine/thre 96.5 0.42 9E-06 51.1 21.0 195 181-394 494-693 (699)
182 PF14668 RICTOR_V: Rapamycin-i 96.5 0.024 5.2E-07 40.7 7.9 66 344-412 4-70 (73)
183 KOG2032 Uncharacterized conser 96.5 0.79 1.7E-05 45.3 20.4 171 221-397 237-414 (533)
184 KOG1243 Protein kinase [Genera 96.3 0.24 5.3E-06 50.9 16.8 193 239-446 327-520 (690)
185 PF13764 E3_UbLigase_R4: E3 ub 96.3 0.94 2E-05 48.8 21.8 225 155-422 114-360 (802)
186 KOG2956 CLIP-associating prote 96.2 0.27 5.9E-06 48.1 15.8 175 172-356 301-477 (516)
187 KOG3036 Protein involved in ce 96.1 0.29 6.3E-06 43.7 14.2 142 299-443 94-249 (293)
188 PF12719 Cnd3: Nuclear condens 96.1 0.039 8.5E-07 52.7 9.9 109 331-445 32-147 (298)
189 PF08045 CDC14: Cell division 96.1 0.38 8.3E-06 44.0 15.4 101 131-231 106-208 (257)
190 KOG1967 DNA repair/transcripti 96.1 0.043 9.2E-07 57.7 10.3 188 117-311 817-1022(1030)
191 PF04078 Rcd1: Cell differenti 96.1 0.077 1.7E-06 48.1 10.7 143 88-232 66-220 (262)
192 COG5656 SXM1 Importin, protein 96.1 2.3 4.9E-05 44.4 25.1 300 134-446 388-716 (970)
193 PF06371 Drf_GBD: Diaphanous G 96.0 0.072 1.6E-06 47.0 10.3 111 73-186 67-186 (187)
194 PF11701 UNC45-central: Myosin 96.0 0.05 1.1E-06 46.3 8.8 145 286-438 5-156 (157)
195 KOG2025 Chromosome condensatio 96.0 1.1 2.4E-05 46.3 19.2 110 238-353 81-190 (892)
196 KOG2032 Uncharacterized conser 96.0 1.5 3.3E-05 43.3 19.5 268 157-441 253-531 (533)
197 KOG2956 CLIP-associating prote 95.9 0.66 1.4E-05 45.5 16.8 147 241-398 328-477 (516)
198 KOG1020 Sister chromatid cohes 95.9 0.13 2.9E-06 57.1 13.5 167 219-399 795-961 (1692)
199 PF02985 HEAT: HEAT repeat; I 95.8 0.014 3E-07 34.1 3.4 30 370-399 1-30 (31)
200 PF08045 CDC14: Cell division 95.7 0.21 4.5E-06 45.7 11.8 100 88-188 107-208 (257)
201 KOG2025 Chromosome condensatio 95.6 1.1 2.3E-05 46.4 17.5 102 73-182 86-188 (892)
202 PF02985 HEAT: HEAT repeat; I 95.6 0.019 4.1E-07 33.6 3.3 29 116-145 1-29 (31)
203 KOG1243 Protein kinase [Genera 95.6 0.46 9.9E-06 49.0 14.8 258 75-356 257-515 (690)
204 KOG1525 Sister chromatid cohes 95.5 5 0.00011 45.5 23.7 148 284-442 259-406 (1266)
205 COG5116 RPN2 26S proteasome re 95.4 0.17 3.6E-06 50.6 10.9 152 122-297 523-675 (926)
206 PF11865 DUF3385: Domain of un 95.3 0.17 3.7E-06 43.2 9.6 147 115-270 10-156 (160)
207 KOG1566 Conserved protein Mo25 95.3 2.1 4.4E-05 40.0 16.8 202 152-356 73-286 (342)
208 KOG1566 Conserved protein Mo25 95.3 1.5 3.3E-05 40.8 15.9 204 194-401 73-289 (342)
209 KOG1993 Nuclear transport rece 95.3 3.6 7.9E-05 43.3 20.0 275 119-401 530-815 (978)
210 PF11701 UNC45-central: Myosin 95.3 0.16 3.6E-06 43.1 9.3 146 327-490 4-155 (157)
211 KOG0413 Uncharacterized conser 95.2 5.7 0.00012 42.9 22.4 108 327-444 969-1076(1529)
212 COG5098 Chromosome condensatio 95.2 0.4 8.6E-06 49.2 12.8 167 254-443 908-1078(1128)
213 KOG1820 Microtubule-associated 95.2 0.56 1.2E-05 50.4 14.7 187 161-356 256-443 (815)
214 KOG1820 Microtubule-associated 95.1 1.1 2.3E-05 48.4 16.6 187 75-272 256-444 (815)
215 PF06025 DUF913: Domain of Unk 95.1 2.4 5.3E-05 41.8 18.0 145 301-447 77-238 (379)
216 PF14668 RICTOR_V: Rapamycin-i 95.1 0.11 2.4E-06 37.3 6.4 66 133-200 4-70 (73)
217 PF07814 WAPL: Wings apart-lik 95.0 2.2 4.8E-05 41.9 17.6 92 117-210 23-116 (361)
218 PF07814 WAPL: Wings apart-lik 95.0 1.3 2.8E-05 43.6 15.9 240 160-409 23-309 (361)
219 KOG3665 ZYG-1-like serine/thre 95.0 3.6 7.8E-05 44.1 20.2 198 265-493 494-696 (699)
220 KOG2137 Protein kinase [Signal 95.0 1.8 3.8E-05 45.1 17.0 142 237-387 384-526 (700)
221 KOG2933 Uncharacterized conser 94.9 0.34 7.3E-06 44.9 10.6 146 241-399 87-235 (334)
222 KOG1949 Uncharacterized conser 94.9 2.6 5.7E-05 43.6 17.6 187 116-312 175-369 (1005)
223 COG5218 YCG1 Chromosome conden 94.9 4 8.8E-05 41.4 18.5 109 237-351 86-194 (885)
224 PF01603 B56: Protein phosphat 94.9 1.2 2.6E-05 44.6 15.5 244 108-365 126-379 (409)
225 PF11707 Npa1: Ribosome 60S bi 94.7 4.5 9.8E-05 39.2 21.8 159 328-494 58-237 (330)
226 PF12231 Rif1_N: Rap1-interact 94.7 5 0.00011 39.7 22.0 266 171-441 59-352 (372)
227 KOG2933 Uncharacterized conser 94.6 0.13 2.9E-06 47.4 7.3 147 285-442 89-235 (334)
228 PF12530 DUF3730: Protein of u 94.5 3.8 8.1E-05 37.5 17.1 202 160-384 2-218 (234)
229 PF01603 B56: Protein phosphat 94.5 0.99 2.2E-05 45.2 13.9 227 74-317 135-374 (409)
230 PF12530 DUF3730: Protein of u 94.3 4.2 9.1E-05 37.2 18.6 202 117-338 2-215 (234)
231 KOG2611 Neurochondrin/leucine- 94.2 5.9 0.00013 39.3 17.5 234 74-313 13-274 (698)
232 KOG2999 Regulator of Rac1, req 94.1 2.8 6.1E-05 42.2 15.4 165 243-409 84-253 (713)
233 PF13764 E3_UbLigase_R4: E3 ub 94.0 8.9 0.00019 41.6 20.2 216 113-335 115-384 (802)
234 KOG2137 Protein kinase [Signal 93.9 4.6 0.0001 42.1 17.2 133 283-424 388-520 (700)
235 PF11707 Npa1: Ribosome 60S bi 93.8 7 0.00015 37.9 19.2 157 286-442 58-238 (330)
236 PF06025 DUF913: Domain of Unk 93.7 2.5 5.3E-05 41.8 14.6 129 107-236 97-238 (379)
237 PLN03076 ARF guanine nucleotid 93.6 6.9 0.00015 46.4 19.9 271 170-445 1149-1493(1780)
238 KOG1949 Uncharacterized conser 93.6 6.9 0.00015 40.7 17.4 211 207-425 181-405 (1005)
239 KOG2611 Neurochondrin/leucine- 93.5 8.3 0.00018 38.3 17.1 192 161-356 14-225 (698)
240 PF12830 Nipped-B_C: Sister ch 93.4 4.8 0.0001 35.4 14.7 146 74-232 10-169 (187)
241 smart00638 LPD_N Lipoprotein N 93.1 11 0.00024 39.9 19.7 135 242-396 393-543 (574)
242 PF14500 MMS19_N: Dos2-interac 93.1 7.5 0.00016 36.2 20.3 223 162-401 3-240 (262)
243 PF11865 DUF3385: Domain of un 93.1 0.92 2E-05 38.7 9.4 38 326-363 10-47 (160)
244 PLN03076 ARF guanine nucleotid 93.0 9.7 0.00021 45.2 20.0 263 83-356 1148-1489(1780)
245 PF13251 DUF4042: Domain of un 92.9 3.3 7.1E-05 36.0 12.5 141 132-272 2-175 (182)
246 PF08506 Cse1: Cse1; InterPro 92.8 8.3 0.00018 37.9 16.8 146 280-435 206-369 (370)
247 PF10363 DUF2435: Protein of u 92.7 0.54 1.2E-05 35.7 6.7 73 73-149 4-76 (92)
248 PF01347 Vitellogenin_N: Lipop 92.6 7.1 0.00015 41.7 17.6 196 116-346 396-612 (618)
249 COG5218 YCG1 Chromosome conden 92.1 12 0.00026 38.3 16.5 104 73-189 92-198 (885)
250 PF04063 DUF383: Domain of unk 92.1 2.2 4.8E-05 37.5 10.6 111 295-409 6-141 (192)
251 PF04388 Hamartin: Hamartin pr 92.1 3.9 8.4E-05 43.7 14.4 157 73-251 5-161 (668)
252 PF08167 RIX1: rRNA processing 92.0 1.1 2.4E-05 38.5 8.6 111 285-399 26-144 (165)
253 KOG1822 Uncharacterized conser 92.0 30 0.00066 40.7 23.7 274 160-442 878-1190(2067)
254 PF06371 Drf_GBD: Diaphanous G 92.0 3.3 7.2E-05 36.3 12.0 82 357-440 95-186 (187)
255 PF08506 Cse1: Cse1; InterPro 91.7 15 0.00032 36.3 19.7 215 257-489 111-370 (370)
256 PF01347 Vitellogenin_N: Lipop 91.5 6.5 0.00014 42.0 15.8 199 242-489 395-617 (618)
257 KOG2999 Regulator of Rac1, req 91.4 3.6 7.9E-05 41.4 12.1 156 74-233 85-245 (713)
258 PF13251 DUF4042: Domain of un 91.3 5.1 0.00011 34.8 11.8 144 300-444 2-177 (182)
259 KOG2005 26S proteasome regulat 91.2 10 0.00022 39.4 15.1 291 74-407 417-713 (878)
260 PF12231 Rif1_N: Rap1-interact 91.2 17 0.00036 36.0 19.8 306 83-398 4-352 (372)
261 PF10363 DUF2435: Protein of u 91.1 1 2.2E-05 34.3 6.5 79 328-409 5-83 (92)
262 KOG1992 Nuclear export recepto 91.0 14 0.0003 39.4 16.2 38 234-271 490-527 (960)
263 KOG1992 Nuclear export recepto 91.0 25 0.00054 37.6 25.9 239 240-498 232-531 (960)
264 KOG1993 Nuclear transport rece 90.9 25 0.00054 37.5 23.6 318 74-403 528-869 (978)
265 cd03567 VHS_GGA VHS domain fam 90.8 1.9 4.2E-05 35.6 8.4 74 370-443 39-118 (139)
266 COG5209 RCD1 Uncharacterized p 90.8 1.7 3.6E-05 38.4 8.3 104 88-193 116-224 (315)
267 PF04063 DUF383: Domain of unk 90.6 1.2 2.7E-05 39.1 7.5 108 169-276 6-137 (192)
268 PF12031 DUF3518: Domain of un 90.4 0.85 1.8E-05 40.9 6.3 79 131-210 139-226 (257)
269 PF11864 DUF3384: Domain of un 90.4 23 0.0005 36.3 26.7 259 78-355 34-329 (464)
270 PF14500 MMS19_N: Dos2-interac 89.8 17 0.00037 33.9 17.4 223 77-316 4-240 (262)
271 KOG0891 DNA-dependent protein 89.7 5.4 0.00012 48.2 13.7 270 82-359 491-766 (2341)
272 smart00638 LPD_N Lipoprotein N 89.6 19 0.00041 38.1 17.0 158 159-345 394-567 (574)
273 PF03378 CAS_CSE1: CAS/CSE pro 89.6 24 0.00051 35.7 16.6 265 170-443 42-326 (435)
274 KOG1832 HIV-1 Vpr-binding prot 89.5 9.9 0.00022 40.7 13.9 311 84-401 365-776 (1516)
275 cd03568 VHS_STAM VHS domain fa 89.0 2.7 5.9E-05 35.0 8.0 74 370-443 38-112 (144)
276 COG5209 RCD1 Uncharacterized p 88.6 2.8 6.1E-05 37.0 7.9 139 300-441 116-268 (315)
277 PF12830 Nipped-B_C: Sister ch 88.4 16 0.00034 32.1 13.0 74 116-195 9-82 (187)
278 PF14225 MOR2-PAG1_C: Cell mor 88.3 22 0.00047 33.1 17.0 177 115-313 64-254 (262)
279 PF14726 RTTN_N: Rotatin, an a 88.2 4 8.6E-05 31.3 7.7 70 410-491 28-97 (98)
280 PF08167 RIX1: rRNA processing 88.2 9.8 0.00021 32.6 11.2 115 116-236 26-149 (165)
281 KOG1788 Uncharacterized conser 88.1 47 0.001 36.8 20.3 354 70-437 507-978 (2799)
282 cd03569 VHS_Hrs_Vps27p VHS dom 87.9 2.1 4.6E-05 35.6 6.7 74 72-145 41-114 (142)
283 KOG1848 Uncharacterized conser 87.9 19 0.00042 40.8 15.3 59 427-491 1071-1129(1610)
284 PF03378 CAS_CSE1: CAS/CSE pro 87.8 23 0.00049 35.8 15.1 220 170-398 84-324 (435)
285 PF06685 DUF1186: Protein of u 87.7 19 0.0004 33.1 13.1 128 284-417 73-202 (249)
286 cd03569 VHS_Hrs_Vps27p VHS dom 87.5 4 8.7E-05 34.0 8.1 74 370-443 42-116 (142)
287 PF08324 PUL: PUL domain; Int 87.3 20 0.00043 33.5 13.9 143 132-276 79-236 (268)
288 PF10521 DUF2454: Protein of u 87.2 6 0.00013 37.4 10.2 70 116-186 120-202 (282)
289 cd03568 VHS_STAM VHS domain fa 87.1 2.6 5.6E-05 35.1 6.8 74 72-145 37-110 (144)
290 KOG0413 Uncharacterized conser 85.6 3.9 8.5E-05 44.0 8.5 131 171-315 944-1075(1529)
291 KOG1848 Uncharacterized conser 85.3 49 0.0011 37.8 16.6 99 168-271 852-958 (1610)
292 PF06685 DUF1186: Protein of u 85.1 31 0.00067 31.7 15.3 96 157-257 72-169 (249)
293 PF12031 DUF3518: Domain of un 84.7 3.4 7.4E-05 37.2 6.6 81 87-169 139-227 (257)
294 smart00288 VHS Domain present 84.5 4.1 8.9E-05 33.5 6.7 74 72-145 37-111 (133)
295 cd03561 VHS VHS domain family; 84.3 6.8 0.00015 32.2 8.0 75 370-444 38-115 (133)
296 cd03561 VHS VHS domain family; 84.0 6.2 0.00013 32.4 7.6 74 72-145 37-112 (133)
297 KOG2229 Protein required for a 83.8 17 0.00036 36.5 11.3 143 326-489 16-161 (616)
298 PF14726 RTTN_N: Rotatin, an a 83.7 12 0.00027 28.7 8.4 93 87-182 2-95 (98)
299 KOG1822 Uncharacterized conser 83.2 75 0.0016 37.7 17.4 231 116-355 877-1126(2067)
300 cd03567 VHS_GGA VHS domain fam 82.9 5.7 0.00012 32.9 6.9 74 72-145 38-116 (139)
301 KOG0891 DNA-dependent protein 82.3 74 0.0016 39.3 17.8 255 133-400 461-721 (2341)
302 PF04388 Hamartin: Hamartin pr 82.0 23 0.0005 38.0 12.8 157 244-423 6-163 (668)
303 PF10274 ParcG: Parkin co-regu 81.9 33 0.00072 29.8 11.3 71 326-398 38-109 (183)
304 PF10274 ParcG: Parkin co-regu 81.6 9.7 0.00021 33.0 8.0 87 369-461 38-125 (183)
305 PF10521 DUF2454: Protein of u 81.1 19 0.0004 34.1 10.6 51 285-335 120-171 (282)
306 PF04821 TIMELESS: Timeless pr 80.9 49 0.0011 30.9 15.6 62 70-145 11-72 (266)
307 KOG2549 Transcription initiati 80.4 32 0.0007 35.0 12.1 124 73-209 208-348 (576)
308 smart00288 VHS Domain present 80.4 11 0.00023 31.0 7.7 74 370-443 38-113 (133)
309 PF08767 CRM1_C: CRM1 C termin 79.5 29 0.00062 33.5 11.5 185 258-445 43-248 (319)
310 PF14225 MOR2-PAG1_C: Cell mor 79.2 55 0.0012 30.5 18.8 179 159-356 65-254 (262)
311 PF04821 TIMELESS: Timeless pr 79.0 23 0.00051 33.1 10.4 75 424-498 132-212 (266)
312 PF12726 SEN1_N: SEN1 N termin 78.7 49 0.0011 36.2 14.3 144 74-232 443-587 (727)
313 PF12726 SEN1_N: SEN1 N termin 77.8 1.1E+02 0.0025 33.4 27.2 113 370-495 442-554 (727)
314 PF00790 VHS: VHS domain; Int 77.7 37 0.00079 28.1 10.3 74 159-232 43-120 (140)
315 KOG1832 HIV-1 Vpr-binding prot 77.2 1.2E+02 0.0026 33.2 17.5 313 170-492 365-771 (1516)
316 cd03572 ENTH_epsin_related ENT 76.8 31 0.00068 27.7 9.0 74 413-496 39-121 (122)
317 PF12074 DUF3554: Domain of un 76.6 60 0.0013 31.6 13.1 216 114-337 21-255 (339)
318 PF08324 PUL: PUL domain; Int 76.0 7.4 0.00016 36.5 6.4 115 84-200 122-244 (268)
319 KOG0392 SNF2 family DNA-depend 75.1 35 0.00077 38.4 11.4 235 73-316 78-328 (1549)
320 KOG1525 Sister chromatid cohes 74.6 1.7E+02 0.0038 33.9 19.0 73 325-399 258-330 (1266)
321 KOG0889 Histone acetyltransfer 74.5 1.7E+02 0.0036 37.5 17.4 160 239-399 1123-1307(3550)
322 KOG1410 Nuclear transport rece 74.5 1.2E+02 0.0026 32.0 23.7 296 74-398 7-334 (1082)
323 COG5101 CRM1 Importin beta-rel 73.2 1.3E+02 0.0027 31.6 18.3 58 83-145 204-261 (1053)
324 cd00197 VHS_ENTH_ANTH VHS, ENT 73.2 21 0.00045 28.3 7.4 71 413-493 38-114 (115)
325 COG5110 RPN1 26S proteasome re 73.1 1.2E+02 0.0025 31.2 17.3 91 304-407 624-714 (881)
326 PF00790 VHS: VHS domain; Int 72.8 6.4 0.00014 32.7 4.5 74 72-145 42-118 (140)
327 PF12463 DUF3689: Protein of u 72.4 47 0.001 31.6 10.4 79 368-446 94-178 (303)
328 PF12054 DUF3535: Domain of un 72.1 57 0.0012 33.1 11.8 216 87-313 102-342 (441)
329 KOG1988 Uncharacterized conser 71.2 1.6E+02 0.0035 32.1 15.5 251 75-356 27-281 (970)
330 PF13001 Ecm29: Proteasome sta 71.1 1.1E+02 0.0024 31.7 13.9 172 86-272 251-444 (501)
331 KOG2005 26S proteasome regulat 71.0 1.4E+02 0.0031 31.4 15.2 72 116-190 49-128 (878)
332 KOG0392 SNF2 family DNA-depend 70.7 50 0.0011 37.3 11.3 174 215-399 143-326 (1549)
333 cd08050 TAF6 TATA Binding Prot 70.6 44 0.00094 32.6 10.3 112 241-354 209-338 (343)
334 PF12783 Sec7_N: Guanine nucle 70.5 53 0.0011 28.1 9.9 109 87-199 37-158 (168)
335 KOG4464 Signaling protein RIC- 69.9 84 0.0018 31.0 11.4 154 204-357 49-232 (532)
336 PF08713 DNA_alkylation: DNA a 69.5 82 0.0018 28.0 12.2 141 118-283 54-196 (213)
337 cd08050 TAF6 TATA Binding Prot 67.4 80 0.0017 30.8 11.4 110 201-311 211-338 (343)
338 PF08767 CRM1_C: CRM1 C termin 67.1 1.2E+02 0.0027 29.2 15.6 156 217-376 43-218 (319)
339 PF13001 Ecm29: Proteasome sta 66.9 1.6E+02 0.0036 30.5 26.7 148 340-498 334-492 (501)
340 cd03572 ENTH_epsin_related ENT 66.9 66 0.0014 25.9 10.5 86 350-440 24-118 (122)
341 PF04499 SAPS: SIT4 phosphatas 66.6 38 0.00083 34.6 9.3 85 359-443 52-150 (475)
342 cd03565 VHS_Tom1 VHS domain fa 66.3 60 0.0013 26.9 8.9 73 371-443 40-117 (141)
343 PF12054 DUF3535: Domain of un 66.2 1.2E+02 0.0026 30.8 12.6 303 172-489 101-438 (441)
344 PF11538 Snurportin1: Snurport 66.1 5.9 0.00013 24.5 2.1 38 11-49 2-39 (40)
345 PF08216 CTNNBL: Catenin-beta- 65.5 7.2 0.00016 30.3 3.0 42 134-176 64-105 (108)
346 PF04869 Uso1_p115_head: Uso1 65.4 1.3E+02 0.0029 28.8 16.1 171 117-313 36-231 (312)
347 PF08711 Med26: TFIIS helical 65.3 14 0.0003 24.5 4.1 35 458-492 13-48 (53)
348 KOG2085 Serine/threonine prote 64.9 52 0.0011 32.3 9.1 84 148-232 167-250 (457)
349 KOG2213 Apoptosis inhibitor 5/ 64.7 1.5E+02 0.0032 29.2 20.4 132 171-314 37-181 (460)
350 smart00509 TFS2N Domain in the 64.4 29 0.00063 25.1 5.8 35 458-492 35-69 (75)
351 PF04499 SAPS: SIT4 phosphatas 62.1 63 0.0014 33.1 9.8 112 284-399 21-149 (475)
352 PLN03205 ATR interacting prote 62.0 1.7E+02 0.0036 28.8 12.3 160 241-401 322-519 (652)
353 KOG2149 Uncharacterized conser 61.6 70 0.0015 31.3 9.4 132 285-421 59-191 (393)
354 cd00197 VHS_ENTH_ANTH VHS, ENT 61.5 45 0.00097 26.4 7.1 70 370-439 38-113 (115)
355 PF09324 DUF1981: Domain of un 61.0 43 0.00093 25.0 6.4 66 410-490 15-84 (86)
356 KOG0301 Phospholipase A2-activ 60.8 2.3E+02 0.0049 30.0 16.1 140 253-399 555-705 (745)
357 PF09324 DUF1981: Domain of un 60.5 16 0.00036 27.2 4.1 70 198-267 15-84 (86)
358 KOG2549 Transcription initiati 59.5 2E+02 0.0044 29.6 12.3 140 163-313 212-370 (576)
359 KOG2073 SAP family cell cycle 59.1 2.8E+02 0.0062 30.6 16.5 175 241-423 189-376 (838)
360 KOG0301 Phospholipase A2-activ 57.5 2.6E+02 0.0056 29.6 16.6 37 257-294 690-726 (745)
361 KOG2149 Uncharacterized conser 56.4 65 0.0014 31.6 8.2 114 73-190 59-173 (393)
362 smart00802 UME Domain in UVSB 56.4 54 0.0012 25.7 6.5 80 326-410 11-95 (107)
363 cd00183 TFIIS_I N-terminal dom 55.6 52 0.0011 23.9 5.9 35 458-492 37-71 (76)
364 KOG1788 Uncharacterized conser 55.5 3.5E+02 0.0077 30.6 15.4 50 160-209 468-518 (2799)
365 PF12074 DUF3554: Domain of un 52.7 2.3E+02 0.0049 27.5 17.3 90 201-294 23-113 (339)
366 PF06012 DUF908: Domain of Unk 52.7 64 0.0014 31.3 7.8 60 106-165 254-323 (329)
367 PF09758 FPL: Uncharacterised 52.2 60 0.0013 27.1 6.4 123 147-269 15-147 (149)
368 PF08216 CTNNBL: Catenin-beta- 52.0 18 0.00039 28.2 3.1 41 388-430 65-105 (108)
369 KOG4464 Signaling protein RIC- 51.9 2.5E+02 0.0055 27.8 13.0 157 285-442 46-229 (532)
370 KOG3132 m3G-cap-specific nucle 51.2 12 0.00026 33.4 2.3 44 10-53 24-67 (325)
371 KOG2199 Signal transducing ada 50.6 53 0.0011 32.0 6.5 73 369-441 45-118 (462)
372 KOG2038 CAATT-binding transcri 50.3 3.6E+02 0.0079 29.2 22.1 76 159-240 305-380 (988)
373 cd03565 VHS_Tom1 VHS domain fa 50.1 1.5E+02 0.0032 24.6 10.4 97 380-496 16-117 (141)
374 KOG0803 Predicted E3 ubiquitin 50.0 4.9E+02 0.011 30.6 17.4 105 74-185 43-151 (1312)
375 KOG2199 Signal transducing ada 49.7 60 0.0013 31.6 6.7 73 412-494 45-118 (462)
376 KOG0803 Predicted E3 ubiquitin 49.5 5E+02 0.011 30.5 14.8 111 286-398 43-153 (1312)
377 KOG2011 Sister chromatid cohes 49.2 4.4E+02 0.0096 29.9 13.9 136 291-438 294-432 (1048)
378 KOG4524 Uncharacterized conser 49.1 74 0.0016 35.0 8.0 95 284-380 803-900 (1014)
379 PF08389 Xpo1: Exportin 1-like 48.9 56 0.0012 26.9 6.2 61 371-436 84-148 (148)
380 PF11791 Aconitase_B_N: Aconit 48.8 42 0.00092 27.9 4.9 43 175-229 80-122 (154)
381 KOG2676 Uncharacterized conser 48.8 23 0.0005 33.8 3.9 63 136-198 376-440 (478)
382 PF12783 Sec7_N: Guanine nucle 48.1 1.7E+02 0.0037 24.9 9.1 80 278-358 67-148 (168)
383 PF06012 DUF908: Domain of Unk 48.0 1.1E+02 0.0024 29.6 8.8 66 131-197 237-307 (329)
384 PF03130 HEAT_PBS: PBS lyase H 47.9 13 0.00027 20.7 1.3 13 343-355 1-13 (27)
385 PF08713 DNA_alkylation: DNA a 47.9 2E+02 0.0043 25.5 12.7 140 243-407 52-193 (213)
386 PF08064 UME: UME (NUC010) dom 47.8 90 0.0019 24.4 6.6 80 326-410 11-95 (107)
387 PF08389 Xpo1: Exportin 1-like 47.5 64 0.0014 26.5 6.3 63 242-308 82-148 (148)
388 PF11791 Aconitase_B_N: Aconit 47.1 47 0.001 27.6 5.0 48 343-401 79-126 (154)
389 KOG2073 SAP family cell cycle 44.9 4.7E+02 0.01 29.0 13.7 39 193-231 183-221 (838)
390 KOG2213 Apoptosis inhibitor 5/ 44.8 3.2E+02 0.0069 27.0 12.4 53 299-357 39-91 (460)
391 KOG1087 Cytosolic sorting prot 44.5 99 0.0021 31.5 7.8 101 378-498 14-116 (470)
392 PF04869 Uso1_p115_head: Uso1 44.3 3E+02 0.0065 26.5 15.3 144 255-398 51-231 (312)
393 PF06743 FAST_1: FAST kinase-l 44.2 1.1E+02 0.0023 21.9 6.0 67 220-287 3-69 (71)
394 PF09758 FPL: Uncharacterised 43.5 88 0.0019 26.2 6.1 126 272-397 14-148 (149)
395 PF15178 TOM_sub5: Mitochondri 43.4 38 0.00082 21.5 2.9 21 18-38 9-30 (51)
396 PF01365 RYDR_ITPR: RIH domain 43.3 73 0.0016 28.4 6.3 98 341-444 75-172 (207)
397 KOG4524 Uncharacterized conser 43.2 1.2E+02 0.0025 33.5 8.3 93 202-295 805-900 (1014)
398 PF12463 DUF3689: Protein of u 43.0 3.1E+02 0.0066 26.2 13.3 77 324-400 93-175 (303)
399 PF12765 Cohesin_HEAT: HEAT re 41.6 18 0.00039 22.7 1.4 40 307-350 2-41 (42)
400 KOG1087 Cytosolic sorting prot 41.6 1.5E+02 0.0032 30.2 8.5 72 370-441 39-112 (470)
401 KOG1924 RhoA GTPase effector D 40.8 5.1E+02 0.011 28.2 13.4 144 342-492 207-362 (1102)
402 PF14663 RasGEF_N_2: Rapamycin 40.3 1.1E+02 0.0023 24.3 6.1 53 116-170 9-70 (115)
403 smart00567 EZ_HEAT E-Z type HE 40.2 55 0.0012 18.3 3.3 13 342-354 2-14 (30)
404 PF11229 DUF3028: Protein of u 39.9 4.4E+02 0.0095 27.1 17.4 276 74-362 44-359 (589)
405 KOG2140 Uncharacterized conser 39.7 4.4E+02 0.0096 27.2 11.4 62 369-436 238-299 (739)
406 PF08623 TIP120: TATA-binding 39.7 1.5E+02 0.0033 25.5 7.1 95 213-311 39-145 (169)
407 cd03562 CID CID (CTD-Interacti 39.6 1.7E+02 0.0037 23.0 7.2 85 254-349 17-101 (114)
408 PF01417 ENTH: ENTH domain; I 39.1 98 0.0021 24.9 5.8 95 384-495 18-122 (125)
409 KOG2152 Sister chromatid cohes 38.2 2.8E+02 0.0061 29.8 9.9 92 160-252 334-426 (865)
410 PF12397 U3snoRNP10: U3 small 38.1 2E+02 0.0044 22.8 10.4 70 240-315 4-76 (121)
411 KOG1791 Uncharacterized conser 37.7 2.6E+02 0.0056 32.9 10.1 198 148-346 1429-1649(1758)
412 PF12243 CTK3: CTD kinase subu 36.2 2.4E+02 0.0053 23.3 7.6 57 331-398 13-69 (139)
413 KOG0889 Histone acetyltransfer 35.6 1.2E+03 0.025 30.8 16.8 78 300-378 1249-1328(3550)
414 COG2914 Uncharacterized protei 34.7 25 0.00055 26.4 1.5 29 10-38 68-97 (99)
415 COG5537 IRR1 Cohesin [Cell div 34.4 5.8E+02 0.013 26.9 12.6 109 287-400 278-388 (740)
416 PF13925 Katanin_con80: con80 31.7 3.2E+02 0.0069 23.3 8.0 72 200-272 28-99 (164)
417 PF07923 N1221: N1221-like pro 31.6 88 0.0019 29.7 5.1 56 112-168 57-126 (293)
418 PF12397 U3snoRNP10: U3 small 31.3 2.7E+02 0.0058 22.1 9.8 94 370-473 7-103 (121)
419 cd06561 AlkD_like A new struct 30.7 2.4E+02 0.0052 24.6 7.6 74 287-367 108-181 (197)
420 PF04064 DUF384: Domain of unk 30.0 1.8E+02 0.004 19.8 5.6 42 457-498 11-53 (58)
421 KOG2011 Sister chromatid cohes 29.9 5.9E+02 0.013 29.0 11.2 135 122-267 294-431 (1048)
422 PF14631 FancD2: Fanconi anaem 29.5 2.6E+02 0.0056 33.3 9.1 152 238-397 431-582 (1426)
423 PF14666 RICTOR_M: Rapamycin-i 29.4 4.3E+02 0.0094 24.0 12.6 129 256-397 78-224 (226)
424 PF10257 RAI16-like: Retinoic 29.3 5.5E+02 0.012 25.2 13.3 129 279-410 4-169 (353)
425 PF11935 DUF3453: Domain of un 29.3 4.5E+02 0.0097 24.1 10.4 110 335-445 2-149 (239)
426 smart00802 UME Domain in UVSB 29.1 2.5E+02 0.0053 22.0 6.3 69 114-187 10-83 (107)
427 KOG2038 CAATT-binding transcri 29.0 7.9E+02 0.017 26.8 18.9 91 84-186 316-408 (988)
428 PF07571 DUF1546: Protein of u 28.0 1.6E+02 0.0035 22.2 5.0 66 295-364 17-83 (92)
429 PF08064 UME: UME (NUC010) dom 27.6 2.7E+02 0.0058 21.7 6.3 68 115-187 11-83 (107)
430 PF14868 DUF4487: Domain of un 25.9 4.5E+02 0.0098 27.6 9.2 75 327-401 480-555 (559)
431 PF13925 Katanin_con80: con80 25.7 4.1E+02 0.0089 22.6 7.7 68 242-314 32-99 (164)
432 COG5095 TAF6 Transcription ini 24.9 6E+02 0.013 24.1 9.7 99 166-274 206-319 (450)
433 PF07923 N1221: N1221-like pro 24.0 1.1E+02 0.0023 29.2 4.1 79 368-446 59-170 (293)
434 PF04510 DUF577: Family of unk 23.9 4.7E+02 0.01 22.5 11.0 155 329-495 6-165 (174)
435 KOG1877 Putative transmembrane 23.5 1.2E+02 0.0027 32.9 4.7 104 272-380 45-151 (819)
436 PF01365 RYDR_ITPR: RIH domain 23.3 1.7E+02 0.0038 26.0 5.2 78 172-253 75-153 (207)
437 KOG2256 Predicted protein invo 22.7 9.5E+02 0.021 25.6 13.0 35 297-337 441-475 (661)
438 COG5537 IRR1 Cohesin [Cell div 22.6 9.3E+02 0.02 25.5 11.1 97 170-270 287-385 (740)
439 KOG2374 Uncharacterized conser 22.3 4.4E+02 0.0096 26.8 7.8 86 117-209 8-93 (661)
440 COG5095 TAF6 Transcription ini 21.8 7E+02 0.015 23.7 9.4 103 204-316 201-319 (450)
441 PF14666 RICTOR_M: Rapamycin-i 21.1 6.3E+02 0.014 22.9 12.7 131 86-230 78-225 (226)
442 PF06367 Drf_FH3: Diaphanous F 20.6 2.4E+02 0.0052 24.7 5.6 76 411-491 20-98 (197)
443 KOG4231 Intracellular membrane 20.4 62 0.0013 32.7 1.7 141 253-396 257-397 (763)
444 PLN03205 ATR interacting prote 20.2 6E+02 0.013 25.2 8.1 113 285-398 324-446 (652)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6e-91 Score=616.66 Aligned_cols=516 Identities=53% Similarity=0.845 Sum_probs=473.7
Q ss_pred CCCCchHHhhccCC--CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHh-hccHHHHHHHh
Q 009700 5 PGSRTEVRKKSYKT--GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKK-LESIPSMVQGV 81 (528)
Q Consensus 5 ~~~~~~~r~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l 81 (528)
..+.++.|+.+||. ++..+|+||||++++++|||+||+|.+.|||+.....+...+. ..+.+++ ...+|.+.+.|
T Consensus 3 srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l 80 (526)
T COG5064 3 SRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQL 80 (526)
T ss_pred cccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHH
Confidence 34578899999997 4779999999999999999999999999999984333321111 1122222 23579999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 161 (528)
.|+|.+.+..|...+|++++.+..|+++.++++|++|.++++|.......++++|+|+|+|+++|+..+++.++++|++|
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVP 160 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVP 160 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchH
Confidence 99999999999999999999998999999999999999999996544368999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCC-CCCChhh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGK-PPAPFDQ 239 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~~ 239 (528)
.++++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +.++.+++.|+|+|||+++ |.+....
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999996443 5799999999999999998 8888899
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
++..+|.|.+++.+.|+++..+|||+++++++++.+.++.+++.|+..+|+++|.+++..++.+|++.+||++++++.++
T Consensus 241 isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QT 320 (526)
T COG5064 241 ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQT 320 (526)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+.++++|+++.+..+|+++ ...+|++|||+|+|+++++.++++++++.+++|+|+++|.+.+..++++||||+.|...+
T Consensus 321 qviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 321 QVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999 889999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC
Q 009700 400 G--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD 477 (528)
Q Consensus 400 ~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~ 477 (528)
| -|+.++|++++|++++|+++|+..|.++.+.+|+++.++++.++.++...+...|.|+.++++.||++.|..+|++.
T Consensus 400 g~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~ 479 (526)
T COG5064 400 GLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV 479 (526)
T ss_pred ccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc
Confidence 7 47899999999999999999999999999999999999999999887665555888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccCCCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 478 NNEIYEKAVKLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 478 ~~~v~~~a~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
|.+||.+|+.||++||++|+.-|+-+|++.++.|+|+++ ++.+++|
T Consensus 480 n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~----~~~qg~f 525 (526)
T COG5064 480 NRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSN----VNQQGNF 525 (526)
T ss_pred ccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCC----ccccCCC
Confidence 999999999999999999987777799999999999986 3445555
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-87 Score=642.84 Aligned_cols=508 Identities=63% Similarity=0.993 Sum_probs=462.4
Q ss_pred chHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHH
Q 009700 9 TEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSG 87 (528)
Q Consensus 9 ~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~ 87 (528)
...|+++||+ +++++|+||||++..+++||+||++.+.|||+........+ ............+.+++++.|+++.
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~S~~~~ 81 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDE---LLSDSQSQASNLELMLAALYSDDPQ 81 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccc---ccchhHHHhhhhHHHHHHHhCCCHH
Confidence 4567777776 79999999999999999999999999999999322111111 0111112223468889999999999
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
.+..+...+|++++...+|++..++..|++|.||++|...+++.+|.+|+|+|+||++++.+.+..+++.|++|.++.++
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 99999999999999998899999999999999999998766699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHH
Q 009700 168 GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAA 246 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~ 246 (528)
.+++..++++|+|+|+|++++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|.
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999966666689999999999999999 88899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ 326 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 326 (528)
|..++.+.|++++.++||+++||++++++.++.+++.|++++|+.+|.+.++.++.+|++++||++++++.+++.++++|
T Consensus 242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG 321 (514)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
+++.|..++..++...++++|||+|+||++|+.++++.++++|++|.|+.+|+.++.++|++|+||++|++.+|+++++.
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~ 401 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIK 401 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHH
Confidence 99999999995547779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHH
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAV 486 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~ 486 (528)
||++.|++++||++|...|.+++.+++++|.+|++.++....... |+++.+++++||+++++.||+|+|++||++|.
T Consensus 402 yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~ 478 (514)
T KOG0166|consen 402 YLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY 478 (514)
T ss_pred HHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence 999999999999999999999999999999999999998764321 88999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 487 KLLERYWVEEEDDEQNIPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 487 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
+||++||++|++++...|.+. +|.|.++ .|.++|+|
T Consensus 479 ~II~~yf~~e~~~~~~~~~~~--~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 479 KIIDTYFSEEDDEDDQQPTTS--QFTFQVQ---APDGGFNF 514 (514)
T ss_pred HHHHHhcCCCccccccccccc--ccccCCC---CCCCCCCC
Confidence 999999998866543334333 6666543 68899998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-44 Score=343.62 Aligned_cols=368 Identities=27% Similarity=0.403 Sum_probs=329.5
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.+|+.+.. .++.++++|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 679999999985 55899999999999999986 677888999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
++.+++.|++++|+.++..++. .+..++.|+|.|+|.+. |. -..-.-..+++.|..++ .+.|++++..+||++++|
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~-P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS-PPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988664 78899999999999765 22 11112233788899999 899999999999999999
Q ss_pred cCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHH
Q 009700 229 CRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALR 306 (528)
Q Consensus 229 ~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~ 306 (528)
+.+.+.. ......+++|.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++.|..++. ++...++..|+|
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 9887433 34445899999999999999999999999999999999999999999999999999999 567779999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
+++||+.|+..+.+.++++|++|.|+.+|++. +.++|++|+|+|+|++. ++++++.++++.|+|++|+.+|...|.++
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 99999999999999999999999999999999 99999999999999997 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-------HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 386 KKEASWAISNATSGGT-------REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
...+..+|.|+...+. .....++-+.|++..+-.+-.+.+.++-..+...+.+++...+
T Consensus 424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 9999999999986442 3345566688999999999999999999999999988887653
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-43 Score=314.70 Aligned_cols=363 Identities=25% Similarity=0.343 Sum_probs=320.0
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|++++++. ++....+++|+|+|.+++++. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 56999999995 566678999999999999986 667778899999999999999998 899999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 151 TRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
++.+++.|++.+++.+|.+. +..+...+.|+|+|+|... |.....+.. .++.|.+++ ...|+++...|||+++
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLi-ys~D~evlvDA~WAiS 268 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLI-YSRDPEVLVDACWAIS 268 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence 99999999999999998874 4588999999999999543 222233322 578888888 8889999999999999
Q ss_pred hhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHH
Q 009700 227 NFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 227 ~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 305 (528)
+|+.++... ......++.+.|+.+|.+++..++..+++.++|+..+++...+.++..|+++.+..+|.++...++..||
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence 999886332 2333467788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 306 RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 306 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
|+++|+..++.++.+.+++.+++|+|+.+|++. +..++++|||+++|.++ .-|+.++++++.|+|.+|+.+|...+
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d 427 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence 999999999999999999999999999999998 99999999999999997 46899999999999999999999998
Q ss_pred hHHHHHHHHHHHHhcCCCC---------H-HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 383 FEVKKEASWAISNATSGGT---------R-EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
.++-+.++-++.|+...|. . .+..++-+.|+++.+..+-++.+..+-..+...+..++
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 8888899999999987663 2 33445556899999999999999998888887777766
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=363.84 Aligned_cols=407 Identities=22% Similarity=0.253 Sum_probs=345.1
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 71 LESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 71 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
-+.++.+++.+.++++..+..|+..+.+++... .+++..+++.|++|.|+++|.+++++.+|++|+|+|.+|++++++.
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 368999999999999999999999998787664 4578899999999999999987654799999999999999999999
Q ss_pred HHHHHhcCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------HHHH---HHhcCChHHHHH
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS---------DDVREQAVWALGNVAGDSPS-----------CRDL---VLSHGALMPLLA 207 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~Ll~ 207 (528)
++.+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+. ....|++.+++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998654 34699999999999987543 1221 234577888888
Q ss_pred hhccchhhHHH----HHHHHHhhhhcCCC-CCCChhhh-------------------HHHHHHHHHHhcCCCHHHHHHHH
Q 009700 208 QLNEHSKLSML----RNATWTLSNFCRGK-PPAPFDQV-------------------RPALAALQHLIFSSDEEVLTDAC 263 (528)
Q Consensus 208 ll~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~~-------------------~~~l~~L~~ll~~~d~~v~~~a~ 263 (528)
.+ +..+...+ ..++|+|.+|++++ |....... .++++.|+.++...+.+++..++
T Consensus 347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av 425 (2102)
T PLN03200 347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI 425 (2102)
T ss_pred hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence 87 44443333 36789999999987 33312111 24567888899989999999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
|+|.+++.++.+..+.+.+.|+++.|+++|.+.+..++..|++++++++.+++.++..++++|+++.|+++|.++ +..+
T Consensus 426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i 504 (2102)
T PLN03200 426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA 504 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 344 KKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
+++|+|+|+|++.+.+ +++.++ +.|++|.|+++|.++++++++.|+|+|.|++..++.+. ++.++.+|.
T Consensus 505 qeeAawAL~NLa~~~~-qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl 574 (2102)
T PLN03200 505 KEDSATVLWNLCCHSE-DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL 574 (2102)
T ss_pred HHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence 9999999999998644 455555 78999999999999999999999999999998776554 367788899
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 423 CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 423 ~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
++++.++..++++|.+++...+.... ........||++.|..|+.|+++++++.|.++|.+||.+..+
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 99999999999999999886654321 122234679999999999999999999999999999996654
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=349.81 Aligned_cols=417 Identities=19% Similarity=0.219 Sum_probs=368.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|+.++...+.+.+..++++|+.++..+ ...++.+.+.|++|.|+++|.+++ ..+|..|+|+|.+++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999999999999999988764 677889999999999999999988 8999999999999999899999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.++.+..+...|++++|+.+| ++.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 667889999999999999743
Q ss_pred CCCCC----------------h----------------------hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 232 KPPAP----------------F----------------------DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 232 ~~~~~----------------~----------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..... . ....++++.|..++.++++.++..|+|+|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21100 0 001368899999999999999999999999999999
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.+..+.++..|++++++.+|.+.+..++..++++|++++.+.. .+...+++.|++++|+++|.+. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999997544 4455678999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHH-H-HHHHHCCChHHHHhhcCCCChHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQ-I-QFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
|++.. ++....+...|+++.|+++|++++++.|++|+|+|.+++..++.++ . .++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99875 4456677788999999999999999999999999999999887555 3 6777899999999999998888776
Q ss_pred H--HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 431 V--CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 431 ~--~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
. ++++|..+.+..+... ...+++..+++..++++.|..-..+.+|.++++|..+|+++..+..
T Consensus 799 ~~~al~~l~~l~~~~~~~~----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 799 TSEALEALALLARTKGGAN----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHHHHHHHHHHhhcccCC----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 6 9999999998655443 2367899999999999999555599999999999999999998765
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.7e-30 Score=229.62 Aligned_cols=363 Identities=21% Similarity=0.204 Sum_probs=314.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+..+...+++.++.++..|..++.+++-. ..+.-.++.-+++..|+.-+..+. .++|..++.|++|++. .++.+
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccch
Confidence 4567778889999999999999999988765 445555666677777776666665 6999999999999999 47788
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+...|++.++.++-++.+..++..+..+|.|+.. ..+.|+.++..|+++.|+.++ ++.+..++.+|+.++++++-+
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 889999999999998888999999999999999964 455789999999999999999 899999999999999999877
Q ss_pred CCCCChhhh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 232 KPPAPFDQV--RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~--~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
......... ..++|.|+.++.++++.++..|..+|.+++.... +...++++|.+|.++++|+++..........|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 533333333 3489999999999999999999999999997654 6678899999999999999998888888999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
|++-..-... .+.+.|++.+|+.+|..+.+.+++-.|..+|.|+++.+......+.+.|.||.++.++.++...+|.+.
T Consensus 318 nisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 9986544333 678999999999999988456699999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..++..++.. .....++.+.|+++.|+.++.+.+.+++..+..+|.|+...-+
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 9999999884 4567888999999999999999999999999999999886543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-29 Score=225.12 Aligned_cols=364 Identities=19% Similarity=0.244 Sum_probs=314.0
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
.+..+..|+..+.++..++|..+..++.+++.. +.....+...|.+.++..+-++.+ ..+|..+..+|.|++. +.+
T Consensus 124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E 199 (550)
T KOG4224|consen 124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE 199 (550)
T ss_pred eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence 345677788778888888999999999999877 566777888999999999777777 8999999999999998 889
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
.++.++..|++|.|+.++.+.+++++..|..+++||+.+.. .|+.+.+.+ .++.|+.++ .++++.++..+..+|.+
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987765 688888887 899999999 88899999999999999
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPALR 306 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al~ 306 (528)
++.+..........+.+|.++++++++-.........++.|++-++. +.-.+++.|++.+|+.+|...+ ..++..|..
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 99886555555668999999999998877777778889999987754 4456788999999999999854 559999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
+|.|++.........+.+.|.++.+..++.++ ...+|.+...+++.++- +......+.+.|++|.|+.+..+.+.+++
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhc
Confidence 99999998888888899999999999999998 88999999999998865 45556788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH------CCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 387 KEASWAISNATSGGTREQIQFLVS------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
-+|+.||.|++.. .+....+++ .|+-..|...+.+.+..+...+.|.+..++....
T Consensus 435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999984 455555554 2555678888888888888888888888887653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=9.6e-25 Score=222.88 Aligned_cols=390 Identities=21% Similarity=0.193 Sum_probs=317.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+-..++.++. +...++..|.+++.. ......+.+.|+++.|+.+|++++ .++...++++|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQeq-Llrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQEQ-LLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 334444444433 444677888888765 566678889999999999999887 8999999999999998 78899999
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
.+.|+++.|.+++.+++.+++..++++|.|++.+.. .|..++..|++|.|+.+|. + +..+..++.+|.++|.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhh
Confidence 999999999999999999999999999999987655 7999999999999999994 3 34556789999999998765
Q ss_pred CChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 235 APFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.......+++|.+++++- .+++.+...+++.+.|++... .+.+.+++.++++.|+.........+ .+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence 555566789999998765 456777788899999999875 46688888888999998876544322 4468888888
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASW 391 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 391 (528)
+.+.....+. +++..|+.++..+.+.+...++..+|+|++..+....+.+-+.+++|.|.+.|..+ +.++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7644332232 47777888887765788999999999999876666666666789999999999866 5689999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHH
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK 469 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 469 (528)
.++.++. +++....+.+.|+++.|+.+|+. .|.+++.+++.+++.++...+- ...++.+.++...
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y 624 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY 624 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence 9999887 67788888899999999999976 6788999999999999988652 3566778899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHh
Q 009700 470 IENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 470 l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+..|.++.|++|+..|...++-.
T Consensus 625 lidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 625 LIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999998777666543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.9e-23 Score=212.10 Aligned_cols=360 Identities=20% Similarity=0.206 Sum_probs=301.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.|.+++.++...++..|.++... ..+...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6799999999999999999999999998765 578889999999999999999988 8999999999999999 88899
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.+.. .|..+...++++.+++++...+++.+...+++++.|++..
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999754 566789999999987664 7889999999999999987777777888899999999998
Q ss_pred CCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHh
Q 009700 232 KPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~ 309 (528)
+.........++++.|+... +..|+- .+..+.|++.+++.....+. +++..|+.++.. .++.....++.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 75544444457788877654 444433 34588899988754444443 377888888876 56789999999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVK 386 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 386 (528)
|+...+....+.+.+.++++++..+|..+. .+++.-+++.+++.++. ++.....+.+.|+++.|+.+|... |.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 999877677766777899999999997653 56789999999999875 677777788999999999999765 68899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 387 KEASWAISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
...++++..+..+. +.+..++ +.+++..|++++.+.++.++..+-.+|.-+....+++.
T Consensus 596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999963 4555665 57899999999999999999999999999998877653
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-19 Score=180.14 Aligned_cols=389 Identities=20% Similarity=0.256 Sum_probs=314.8
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..|++.++.. |+..|++|+..|+.+++..+.+....+--.-++|.|+.+|++..+.++...|+++|++++.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 67888888865 99999999999999999875555544444567999999999988899999999999999998899999
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+++.++||.|+.-|.. ...++.++++.+|-.|+...+. .++..|++...+..| +.-+..+++.|+.+..|.|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999975544 8899999999999999988774 688999999999999 778899999999999999998
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhcCCC----hhhHHHH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHSS----TTVLVPA 304 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a 304 (528)
-+...+..+...+|.|..+|+..|....+.+|-++.++++. .++..+.++..|++....++|.-.. ..+....
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 77777788899999999999999999999999999999864 5678888999999999999987642 3455667
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCc-------------hhHHHHHH-----------------------
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-------------KSIKKEAC----------------------- 348 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~v~~~a~----------------------- 348 (528)
++.+..++.+++-....+...++...+..+|..... |.-..+..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~ 484 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLI 484 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhh
Confidence 888888888888777777777888887777754210 00000000
Q ss_pred -----------------------------HHHH-------------H---------HhcCCHHHHHHHHHcCcHHHHHHH
Q 009700 349 -----------------------------WTIS-------------N---------ITAGSRSQIQAVIEANIIAPLVYL 377 (528)
Q Consensus 349 -----------------------------~~L~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~l 377 (528)
..+. + +....|+..+.++. .++|.|+++
T Consensus 485 ~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveV 563 (1051)
T KOG0168|consen 485 YEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEV 563 (1051)
T ss_pred cccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHH
Confidence 1111 0 00122333444443 489999999
Q ss_pred HccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcch
Q 009700 378 LQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTAN 455 (528)
Q Consensus 378 l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~ 455 (528)
+.+. ++.||..++.||..+....+.+.+..++.+ .+-..+-.+|.++|..++..+|....-++++-++.
T Consensus 564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------- 634 (1051)
T KOG0168|consen 564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------- 634 (1051)
T ss_pred HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence 8876 899999999999999998889988888755 55667888999999999999999999888877643
Q ss_pred hhHHHhhhcccHHHHHHHhcCC
Q 009700 456 VYSEMIDECDGLDKIENLQSHD 477 (528)
Q Consensus 456 ~~~~~l~~~g~~~~l~~L~~~~ 477 (528)
|...|.+.|++..+..|....
T Consensus 635 -F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 635 -FSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred -hhhhHhhhhHHHHHHHHhccC
Confidence 888899999999999997633
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=1.3e-17 Score=166.66 Aligned_cols=363 Identities=20% Similarity=0.226 Sum_probs=283.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--HHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS--CRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~--~~~ 194 (528)
+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+++|-|+...... .+-
T Consensus 235 lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 778889999888 89999999999999999999999999999999999999999999999999999999966554 677
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC--------------CCHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS--------------SDEEVLT 260 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~~ 260 (528)
.+.+.++++.++++|....|.++++.++.+|+||+..+ ......+...++.|..-+-. .+.++..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 78899999999999987789999999999999999883 34445556666666544321 1367889
Q ss_pred HHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCc-----------------
Q 009700 261 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDD----------------- 316 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~----------------- 316 (528)
.+..+|.|++....+..+.+-+. |++..|+..+++ .+....++|+.++-|+...-.
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999998777777777665 889999888763 455567777777777753211
Q ss_pred --------------chhHH----------------------HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH-
Q 009700 317 --------------TQTQC----------------------VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR- 359 (528)
Q Consensus 317 --------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 359 (528)
..... +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 00000 11122444545556544377889999999999998532
Q ss_pred ---HHHHHH-HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC------ChHHH
Q 009700 360 ---SQIQAV-IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP------DPRIV 429 (528)
Q Consensus 360 ---~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~~~ 429 (528)
.....+ .+..++|.|++++..++..+...++.+|.|++.+. . .+.++..++++.|+++|... +.+++
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence 223334 36789999999999999999999999999999953 2 34455688999999999653 35788
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcCC
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~~ 495 (528)
..++..|.+|+..... .+.-+-+.+|+++|..|. ...++.+.+.|..++..++..
T Consensus 630 ~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999976543 244555899999999996 455678899999998887764
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.7e-16 Score=162.89 Aligned_cols=363 Identities=17% Similarity=0.143 Sum_probs=261.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++..+|+++..|..|+..|..+....++.....+ ..+.+.|.+.+.+++.+ ++..|+++++.++...+.....
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHH
Confidence 33444455689999999999999988776533333222 23578888889888845 9999999999998855322222
Q ss_pred HHh-cCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhh
Q 009700 154 VIE-HGAVPKFVQLLG----SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSN 227 (528)
Q Consensus 154 i~~-~g~i~~L~~lL~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~ 227 (528)
+-. ...+|.++..+. .++.+....++.+|..++...|.+-...+. .++...+.... ++-++.++..|+.+|..
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 222 246776766654 467777889999999999777764333222 14444455553 23478899999999999
Q ss_pred hcCCCCCCCh---hhhHHHHHHHHHHhcCC--C--------------HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHH
Q 009700 228 FCRGKPPAPF---DQVRPALAALQHLIFSS--D--------------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 288 (528)
Q Consensus 228 l~~~~~~~~~---~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 288 (528)
+++..|.... .....+++.++.++... | ..--..|..++-.++.+-+.. .+-.-+++.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~ 352 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEA 352 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHH
Confidence 9987432221 23456677777766421 1 112334555665555542211 111125677
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA 368 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 368 (528)
+-.++.+.+|.-|..++.+|+.++.|+.+.....++ .+++.++..|.++ ++.||..||.+++.++.+....++.....
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 788889999999999999999999999887765554 6899999999999 99999999999999999888888888888
Q ss_pred CcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH-HHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 369 NIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 369 ~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
-++|.|+..+.+. +++|+..|+.++.|++..++.+.+....+ +++. .|..++.++.+.+++.++.+|..+....+..
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 8899999998876 67999999999999999887665544322 3555 5555677888999999999999999887654
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=1.5e-15 Score=154.25 Aligned_cols=402 Identities=18% Similarity=0.173 Sum_probs=296.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+++.|... .....++..+..-+.. .+.. +..-.+.+..+|++.+ .+....++.+|..+.... .....
T Consensus 6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l----~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l- 74 (503)
T PF10508_consen 6 NELLEELSSK--AERLEALPELKTELSS--SPFL----ERLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL- 74 (503)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHH----HhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence 4444455443 3345555555544433 1211 1222344788888776 677778888888888732 22222
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|.+++...+.
T Consensus 75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence 346778999999999999999999999999988887788888999999999999 899999999999999999987644
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
.....-.+.++.|..++...++.++..++.++.+++..+++....+.+.|+++.++..|.+++.-++..++.++..++.
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 4333345568889999988888999999999999999999999999999999999999999888899999999999999
Q ss_pred CcchhHHHhccCChHHHHHHhcccC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQNY-KK---S-IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.+...+.+.+.|+++.|..++.+.. ++ . ..-......++++...+..+.... ..++..+.+++.+.|+..+..|
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence 5666778999999999999997653 33 1 222334667777764444443222 2366677788889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHH-HHC-----CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhh
Q 009700 390 SWAISNATSGGTREQIQFL-VSQ-----GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDE 463 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~ 463 (528)
..+++.++. +.+....+ ... .++..+.....+...+++..++.++.+++...+.....+ -.+.....++.
T Consensus 311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~--i~~~~~~w~~~ 386 (503)
T PF10508_consen 311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND--ILSITESWYES 386 (503)
T ss_pred HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH--HHHHHHHHHHH
Confidence 999999987 55666666 333 246666667777888999999999999997665421100 01111222222
Q ss_pred cc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 464 CD--GLD-KIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 464 ~g--~~~-~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.| ... .+..+...+=++++-.+..++...+..
T Consensus 387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 23 223 566777888899999999999887764
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=2.6e-15 Score=152.59 Aligned_cols=397 Identities=18% Similarity=0.173 Sum_probs=297.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.+...+.+.+.+....++..|.+++... .+... ..++.+.|...|.+++ +.++..+++.|.+++.++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3777788888888888888999998863 22222 4567899999999998 99999999999999997777788888
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
+.++++.++.+|.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999999999999999877654 5567777788888888 5556778888999999998876433
Q ss_pred C-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh-----hhHHH-HHHHH
Q 009700 236 P-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST-----TVLVP-ALRTV 308 (528)
Q Consensus 236 ~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~-al~~L 308 (528)
. .....|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+... .+..+ .+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 2 23336899999999999999999999999999999 55577888999999999999976322 22333 44788
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-c----HHHHHHHHccCC
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV-IEAN-I----IAPLVYLLQHAE 382 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-~----i~~L~~ll~~~~ 382 (528)
++++...+....... ..++..+..++.+. ++..+..|..+++.+++ +.+..+.+ .+.+ . +..+.....++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 888876443332111 24666777778888 99999999999999975 56666666 4332 3 444444556677
Q ss_pred hHHHHHHHHHHHHhcCCCCH---HHH----HHH---HHCCChH-HHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 383 FEVKKEASWAISNATSGGTR---EQI----QFL---VSQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~~---~~~----~~l---~~~~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
.++|..+..+|.++...++. +.+ +.. ...+... .+..+++.+=++++..++..|..++.....
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 89999999999999664432 111 111 1234455 888889888899999999999999977532
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
...+....|+++-+-.=....+.+..+.=..++..+..
T Consensus 425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 23344455555555433445667777776777777653
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=1.9e-16 Score=158.59 Aligned_cols=364 Identities=21% Similarity=0.253 Sum_probs=273.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh--h
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE--H 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~ 150 (528)
.+|+.+.+|.+.++.++-.|+..+..+.... +.....+.+.|.||.||.+|.+.. .+++.+|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 5799999999999999999998888665543 555567778999999999999998 99999999999999997655 7
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------------chhhH
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------------HSKLS 216 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------------~~~~~ 216 (528)
.-.+.+.++|+.++.+|.. .+.++++.+..+|+||++.+ .++..++. ..+..|...+.. -.+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888999999999999987 88999999999999998763 35555443 345555544311 11367
Q ss_pred HHHHHHHHhhhhcCCCCC--CChhhhHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhccCCh-----HHHHHH---
Q 009700 217 MLRNATWTLSNFCRGKPP--APFDQVRPALAALQHLIF------SSDEEVLTDACWALSYLSDGTN-----DKIQAV--- 280 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~-----~~~~~~--- 280 (528)
+..+++.+|.|++..... .......|++..|+..++ ..|..-.+++..++.|++..-. ...+..
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 889999999999986422 223344788888887776 2356677888888888864321 000000
Q ss_pred ---------------------------------------------HHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcC
Q 009700 281 ---------------------------------------------IEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 281 ---------------------------------------------~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~ 314 (528)
....++..-..+|. +.++.+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00112222233333 35667889999999999987
Q ss_pred Ccc----hhHHH-hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC------Ch
Q 009700 315 DDT----QTQCV-IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA------EF 383 (528)
Q Consensus 315 ~~~----~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 383 (528)
... ....+ ....+++.|+.+|... +..+.+.++.+|.|++.+ .. .+.++..++++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 643 22333 5678999999999999 999999999999999874 22 34556678999999999765 36
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhh
Q 009700 384 EVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~ 444 (528)
++...+|.+|.|++.. +....+-+.+.+.++.|+.+..+. +++..+.+...+..+-...+
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999974 577888889999999999988774 56777777777777665544
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=3.7e-16 Score=162.85 Aligned_cols=365 Identities=19% Similarity=0.190 Sum_probs=276.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD--LPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
....+..++...|++. -.+.|..+.+. ...+..+...|.+|.|+++|.-++ +.+.+..|-.+|.||....++.
T Consensus 198 ts~sllsml~t~D~ee---~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~ 272 (2195)
T KOG2122|consen 198 TSNSLLSMLGTDDEEE---MARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE 272 (2195)
T ss_pred hhhHHhhhcccCCHHH---HHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence 4446677777777643 33445555443 556778889999999999997654 3678899999999999977766
Q ss_pred HHHHHhcCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc--
Q 009700 151 TRVVIEHGAVPKFVQ----------LLGS-----ASDDVRE---QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-- 210 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~----------lL~~-----~~~~i~~---~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-- 210 (528)
...-.+..+++.|-+ ++.. ....+.. .|+.+|..++ .++++|..+-+.|++..+-.++.
T Consensus 273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVD 351 (2195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHH
Confidence 554443334443321 2222 1122222 4555555554 44668999999999999988773
Q ss_pred ---------cchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH
Q 009700 211 ---------EHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA 279 (528)
Q Consensus 211 ---------~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 279 (528)
......+++++..+|.||..++.... .....+++..++..|.+..+++..-...+|.||+-..+.+...
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence 12245799999999999999973322 2334899999999999988899888999999999876656555
Q ss_pred HHH-hCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHHhc-cCChHHHHHHhcccC---chhHHHHHHHHHHH
Q 009700 280 VIE-AGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCVID-NQGLPRLYQLLTQNY---KKSIKKEACWTISN 353 (528)
Q Consensus 280 ~~~-~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n 353 (528)
++. .|-+..|+.+ |...+.......+.+||||+.++......+-. .|.+.+|+.+|.... ...+...|..+|.|
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 554 4777777765 45566678899999999999877665444433 599999999997652 35678888888888
Q ss_pred Hhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHH
Q 009700 354 ITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 354 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
+.. .+..+.+.+.+++++..|+..|++....+..++|.+|+||.... ++.-++|++.|.+..|.+++.+++..+..
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 764 57888888889999999999999999999999999999999974 66668999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 009700 431 VCLEGLENILKIGE 444 (528)
Q Consensus 431 ~~l~~l~~i~~~~~ 444 (528)
....+|.|++..-+
T Consensus 591 GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 591 GSAAALRNLLNFRP 604 (2195)
T ss_pred hHHHHHHHHhcCCc
Confidence 99999999998764
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.73 E-value=7.2e-16 Score=142.89 Aligned_cols=354 Identities=15% Similarity=0.102 Sum_probs=249.8
Q ss_pred CHHHHHHHHHHHHHHhccc--CCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 85 NSGLQLEATTQFRKLLSIE--RCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+..+...+..++......+ ++......+.++++..|.+..++++ .++..++.++|+|++..+.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3344444555555554321 1122334466788999999999887 899999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHhhhhcCCCCC
Q 009700 163 FVQLLGS-------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 163 L~~lL~~-------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
++.+|+. .+.+....+...|.|..-++...+..+.+.|+++.|...+.- ..+....+.+.....|+..--..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8887765 235777888899999999999999999999999988887732 22333333333333333221100
Q ss_pred --CChhhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CCh-------hhHHH
Q 009700 235 --APFDQVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SST-------TVLVP 303 (528)
Q Consensus 235 --~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~~~ 303 (528)
.....-..+.-.+++++.+ -.+++.+-+...+.+.++++. ..-.+.+.|.++.++.++.. +.. .....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 1111112333344455443 245566666777777776643 44456777899999888876 221 12233
Q ss_pred HHHHHhHhhcCCcchhHHHhccC-ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQ-GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH-- 380 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-- 380 (528)
++....-+..|++... .+...+ +++.+..++.+. +....-.+..+|+|+++.+... .++++.+++..|++++..
T Consensus 293 ~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhc
Confidence 4444444556655543 455555 899999999999 9999999999999998865554 468888999999999865
Q ss_pred ---CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 381 ---AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 381 ---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
++.+++..++.||.|+.... .....+...|+.+.+...++...|.++...+..+..+....++
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred CCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 46889999999999998843 3445677899999999999999999998888888877765553
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3.2e-14 Score=128.13 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=251.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTSEHTRVVIEHGA 159 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 159 (528)
-.+++...-++++.+|..+... . ..+.+..+...++.+|... ++.++....+.++..-+..+..+++.+++.++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~--q---pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHK--Q---PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcC--C---cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 3467778888899888877544 2 2355667788889998643 24788889999999999999999999999999
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 160 VPKFVQLLGS-ASDDVREQAVWALGNVAGDSP---------SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 160 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
++.+...|.. +...+.....|++..+..++. .+...+...|++..|+..+.-..++.+...++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999987765 445677788999999876542 345667788889999999976778999999999999998
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCC-CHH---HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSS-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVP 303 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~ 303 (528)
-.+.........|++..|++++.+. +.. ....++..|..++.. ++....+++.|+.+.++.++.. ++|.+...
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 7765555566689999999999873 333 446677788887754 5577889999999999998753 78889999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
++.+++-++-..++....+++.|+-...++.|+..+ ...+++.|||+|.|+...+.++...++.. .++.|+..-...+
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANH 428 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcC
Confidence 999999999988888889999999999999997543 67899999999999999888888777765 5788888888888
Q ss_pred hHHHHHHHHHHHHhcC
Q 009700 383 FEVKKEASWAISNATS 398 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~ 398 (528)
+.....|-.+|..+-.
T Consensus 429 ~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 429 ETCEAAAKAALRDLGC 444 (461)
T ss_pred ccHHHHHHHHHHhcCc
Confidence 8888888888887754
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=2.7e-15 Score=156.59 Aligned_cols=328 Identities=18% Similarity=0.177 Sum_probs=253.1
Q ss_pred HhhccHHHHHHHhcCC---CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHH----------HhhcCCC------C
Q 009700 69 KKLESIPSMVQGVLSE---NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV----------EFLDRHD------L 129 (528)
Q Consensus 69 ~~~~~l~~l~~~l~s~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv----------~lL~~~~------~ 129 (528)
...+.++.|++.+... +.+.+..|-.+|.+++....+.. ..=.+..+++.|- .++.... .
T Consensus 232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k-r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK-RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 3457899999999854 45678888889999987642221 1111122333332 2232211 1
Q ss_pred hHHHH-HHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhHHH-H
Q 009700 130 PQLQF-EAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS------------ASDDVREQAVWALGNVAGDSPSCRD-L 195 (528)
Q Consensus 130 ~~v~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~i~~~a~~~L~nl~~~~~~~~~-~ 195 (528)
..-+. .|+..|..++. +.+++..+.+.|++.++-.||.- ....+|..+..+|.||......++. .
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23455 67777888877 89999999999999999887742 2357999999999999966655544 4
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh--HHHHHHHHHH-hcCCCHHHHHHHHHHHHhhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV--RPALAALQHL-IFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~ 272 (528)
+...|++..++..| .+..+++.+....+|.||+..........+ .+.+-.|..+ ++...+..+..++.+|+||+.+
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 55678999999999 666778888999999999988633333222 4555555544 5666778889999999999999
Q ss_pred ChHHHHHHHHh-CcHHHHHHHhcCC----ChhhHHHHHHHHhHhh---cCCcchhHHHhccCChHHHHHHhcccCchhHH
Q 009700 273 TNDKIQAVIEA-GVCPRLVELLLHS----STTVLVPALRTVGNIV---TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIK 344 (528)
Q Consensus 273 ~~~~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~al~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 344 (528)
..++...++.. |.+..|+.+|... .-.|.+.+-.+|.|++ ..+..+.+.+.+++.+..|++.|++. +..+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence 88888888876 8899999999875 3356777666666654 55777888899999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 345 KEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 345 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.++|.+|.||.+.+++..+.+++.|.++.|..++.+.+..+..-++.+|.|+...-
T Consensus 548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998754
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.7e-14 Score=131.68 Aligned_cols=377 Identities=19% Similarity=0.144 Sum_probs=277.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 164 (528)
..++...|+..|.+++.. ...-..+....++..||..|..++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 344555677778888754 344556778899999999999888 7888888899999887 677888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH
Q 009700 165 QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244 (528)
Q Consensus 165 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 244 (528)
+++...+++++...+..+.|++.++. .|..++..|.+|.+..++.++... .-|+..+..++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999987765 688889999999999999443332 34666777888776656666678999
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 245 AALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 245 ~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+.+.+.+- ..+.+|-...+....|+|-+.. +.+.+++...+..|+..--....... ...+.|++.+.......++
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~lL---mK~vRniSqHeg~tqn~Fi 503 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLLL---MKVVRNISQHEGATQNMFI 503 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchHH---HHHHHHhhhccchHHHHHH
Confidence 99887654 4456665555555567776533 45666766667777665433222233 3455666665543333444
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCC
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 401 (528)
+ .+.-|...++...+...-.++..+++|+...+-+..+.+-..+++|.+-..|..+ ..++......+++.++. +
T Consensus 504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d 579 (791)
T KOG1222|consen 504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--D 579 (791)
T ss_pred H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--h
Confidence 4 4556666676654667888999999999887667776677889999999998876 45677777777777776 3
Q ss_pred HHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCH
Q 009700 402 REQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN 479 (528)
Q Consensus 402 ~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~ 479 (528)
......+...++++.|+++|+. .|.+++.+++..+..++...-. -.-++.+...-..+..|+++.|.
T Consensus 580 ~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 580 LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhcccH
Confidence 4455556688999999999976 6777888888888888877321 23456666667788899999999
Q ss_pred HHHHHHHHH
Q 009700 480 EIYEKAVKL 488 (528)
Q Consensus 480 ~v~~~a~~i 488 (528)
+|++.+...
T Consensus 649 eiRkVCDn~ 657 (791)
T KOG1222|consen 649 EIRKVCDNA 657 (791)
T ss_pred HHHHHHHHH
Confidence 988655433
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.69 E-value=4.1e-14 Score=131.38 Aligned_cols=400 Identities=12% Similarity=0.047 Sum_probs=292.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC----C--ChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH----D--LPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~--~~~v~~~a~~~L~~l~~ 145 (528)
+.++.|.+...|+|.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+.- + +.+.-.-+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 34677777788888999999999999998876 78889999999977777766531 1 23566667788999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
++.+.+..+.+.|+++.|...+.- ++....+.++..++|+.+- ++...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999988754 6777888888888887743 2334556667777888888887777888999999
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcC-CC-------HHHHHHHHHHHHhhccCChHHHHHHHHhC-cHHHHHHHh
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFS-SD-------EEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 293 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL 293 (528)
..|...+.++...-.....|.+..++.+++. .+ ......++....-+..+++ ..+.+...+ +++.+.+++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence 9999999886444444446677777777764 21 2233444444555555544 445555555 899999999
Q ss_pred cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009700 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITAGSRSQIQAVIEAN 369 (528)
Q Consensus 294 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 369 (528)
.+++......+.-++||+++.++..+ .+++.+++..|++.|.... +..++..++.+|.|++-. ......++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999776655 6888899999999996421 567889999999999753 23344677899
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCChH-HHHHHHHHHHHHHHhhhhch
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDPR-IVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~-~~~~~l~~l~~i~~~~~~~~ 447 (528)
+...++.+++...|++...-..++.-+..+ .+.....+.+ -..+..|++.-+++|-. +.....+.+.-+++..-..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 999999999999999888887777766553 2223333333 25677777777777654 5555666666666654321
Q ss_pred hccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHH
Q 009700 448 EAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKA 485 (528)
Q Consensus 448 ~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a 485 (528)
.+.-.+.+.||++....+....+...+..|
T Consensus 481 --------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 --------DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred --------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 144556688888888877766666555544
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.5e-13 Score=124.71 Aligned_cols=359 Identities=16% Similarity=0.148 Sum_probs=271.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.-|++.|...+.++......-|.++.-. .++...+.+.|++..|+.++...+ ++++...+..+.|++. +...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence 467788888887777777666667766544 577788889999999999999988 9999999999999998 667888
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++..|.+|.|..+|.++. -...|+..+..++.+.. .+..+....+++.+++.+....+..+-........|+|.++
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 8999999999999998643 33457777888876654 67777888889988887766666666666666677898887
Q ss_pred CCCChhhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhH
Q 009700 233 PPAPFDQVRPALAALQH-LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGN 310 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~ 310 (528)
...........+..|+. .+++.|.-+ ...+.+++.+.......+++ .+.-|...++. .+......|+.+++|
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 55555555556666654 455555432 34567777776655556665 45666666665 456788899999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKK 387 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~ 387 (528)
+.-..-...+.+.+.+++|++...|..+- ..++.-...-+++.++. .......+..+++|+.|+++|+.. +.+...
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 99877777777788899999999997653 34566677777777755 344455566889999999999764 567777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 388 EASWAISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
..++++..+..+ ...+.+++ +...-..+++++...+.+++.++-.+|.-+.....++.
T Consensus 611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888875 34455555 44666789999999999999999999988888776654
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=5.1e-13 Score=120.45 Aligned_cols=317 Identities=16% Similarity=0.187 Sum_probs=244.4
Q ss_pred hcCcHHHHHHhh---cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009700 113 RAGVVPRFVEFL---DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAG 187 (528)
Q Consensus 113 ~~g~i~~Lv~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~ 187 (528)
..|..+.++.++ .+++ ..+-..++.+|..+..+.|+ +.+..++..++++|.. ++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555555444 3344 77889999999999887665 4456778889998865 678888889999999998
Q ss_pred CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-Ch---------hhhHHHHHHHHHHhcCC-CH
Q 009700 188 DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PF---------DQVRPALAALQHLIFSS-DE 256 (528)
Q Consensus 188 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~---------~~~~~~l~~L~~ll~~~-d~ 256 (528)
..+.+|+.+.+.++++.+...|.......+.+.++|++.-|..++... .+ ..-.+++..|...++.. |+
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 889999999999999998878866666689999999999998775211 11 11245677788888754 79
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh-h---hHHHHHHHHhHhhcCCcchhHHHhccCChHHHH
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST-T---VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~---v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 332 (528)
.+...++.+|..++-. ++.-+.+.+.|++..+++++.+.+. . ....++..|..++. +++....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 9999999999999865 4577888999999999999988433 3 34567777777764 556666899999999999
Q ss_pred HHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 333 QLLT-QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 333 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.++. +..+|.|..+++.+++-++-..|++-..+++.|+-...++.|+.. ...++++|||.+.|++..+ .+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence 9874 333899999999999999999999999999999999888888765 4689999999999999864 56777777
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
..| ++.|+..-...++.....+-.+|.-
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHh
Confidence 665 6666666666666555555455543
No 25
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=3.4e-14 Score=132.60 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=201.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
-++.|..+|.+.+ ..++..|+++|..+-. ..+++.+..++.++++.+|..++|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3778899998888 8999999999998754 23567788889999999999999999998532211
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
....++.|..++.+++++.++..++.+|.+++...+.. ...+++.+...+.++++.|+..++++|+.+...
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~--- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE--- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence 11246777777558889999999999999997553222 234566777888888999999999999876531
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..++.|+.+|.++++.++..|+.+||.+...++ .+++.|+..|.+. +..||..|.|+|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 267899999999999999999999999843222 2456799999988 9999999999999873
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLE 434 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~ 434 (528)
. + .++|.|+..+.+++ ++..|+.+|+++-. ++ .++.|..+++ ..|+.++..+.+
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence 2 2 37899999999876 67789999998865 22 5788888886 789999988888
Q ss_pred HHHH
Q 009700 435 GLEN 438 (528)
Q Consensus 435 ~l~~ 438 (528)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 7753
No 26
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=5.8e-14 Score=131.08 Aligned_cols=254 Identities=15% Similarity=0.102 Sum_probs=199.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.|+..|.+.+..++..|+..|..+-. ..+++.+..++.+++ +.++..|+++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46888999999999999999999986632 224777888888888 99999999999998652211
Q ss_pred HHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQL-LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
...+++.|..+ +.++++.+|..++.+|++++...... ....+..+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11256778776 67788999999999999997443211 011344555666 66788999999999976642
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
...++.|+.++.++++.|+..++++|+.+....+ .+++.|+..|.+.++.++..|+++|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999844333 2567899999999999999999999975
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc-cCChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ-HAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 390 (528)
-. ...++.|++.|.++ + ++..++.+|+++.. + ..+|.|..++. .+|..++..|.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 43 24678999999876 4 78899999999853 2 26889999996 77999999999
Q ss_pred HHHHH
Q 009700 391 WAISN 395 (528)
Q Consensus 391 ~aL~n 395 (528)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98853
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.1e-12 Score=134.50 Aligned_cols=391 Identities=16% Similarity=0.116 Sum_probs=280.6
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 75 PSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 75 ~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
..++..+.++ .+.++..-+..+..+++..-+..+ .++++.|.+..++++ +..|+.|+.+|..+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 4566666664 466888888888888876522223 346899999999998 999999999999988733222211
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhh
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP---SCRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSN 227 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~ 227 (528)
.+ ..+.+.+.+.+.+++..+|..++++++.++...+ ..++.+.. .+|.++..+. +..+.+....+..+|..
T Consensus 156 ~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 HL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 11 1234556666777666699999999999985442 33333332 4565665553 44566677888899999
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChHHHHHHH--HhCcHHHHHHHhcCC--C----
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLLHS--S---- 297 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~--~---- 297 (528)
|....|..-...+..++........+. ++.++..|+..+..++...+...+... -..+++.++.++... +
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 988877666666777888877777765 689999999999999887554333222 223566666665431 1
Q ss_pred ----------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 298 ----------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 298 ----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
......|..+|-.++.+-+... +-.-+++.+-.+|.++ +..-|+.++.+|+.++.|+.+.+...++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1245567788888876544211 1123567788889998 9999999999999999999998887665
Q ss_pred cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhc
Q 009700 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.+++..+..+.++++.||-.|+.|++.++..-.++.-++ ...-+++.|+..+++ .++++...+..++.+++..+.+.
T Consensus 389 -~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 389 -KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred -HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 589999999999999999999999999998766555444 455677788888877 56789999999999999988765
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
. ..+|...+-+. ++..|.+++.+.+++.+...|.
T Consensus 467 ~------l~pYLd~lm~~----~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 467 I------LEPYLDGLMEK----KLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred H------HHHHHHHHHHH----HHHHHhcCCchhHHHHHHHHHH
Confidence 4 45566666322 7777888999988877666554
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.62 E-value=3.9e-13 Score=131.63 Aligned_cols=365 Identities=16% Similarity=0.122 Sum_probs=246.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
++..+.+.+++....|..-..+.+.+. .++...+++.|.+|.|+.+++..+ .++.+.+.+-++.....+.......+.
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344555778888888999999988876 555567999999999999998755 356777777788888888888889999
Q ss_pred hcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhH--HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 156 EHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSC--RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
+.+.++.|+.+|..++ ..+++.++.++.++...++.. ........+++.+..++ ..+.......-+...+++|...
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence 9999999999999988 899999999999998666421 11112222334333333 3234444455555555666554
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH---hhccCChHHHHH----HHHhCcHHH--HHHHhcCCCh-----
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS---YLSDGTNDKIQA----VIEAGVCPR--LVELLLHSST----- 298 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~~~----~~~~~~l~~--L~~lL~~~~~----- 298 (528)
.........++.+.+.-++.......+..++.+++ ++..+++..... ..+.|+.++ +..++++++.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 22222333445555544444445556666666666 444333322111 112222221 1111111110
Q ss_pred --------------------------------------------------------------------------------
Q 009700 299 -------------------------------------------------------------------------------- 298 (528)
Q Consensus 299 -------------------------------------------------------------------------------- 298 (528)
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------------------------hhHHHHHHHHhHhhcCCcch
Q 009700 299 ------------------------------------------------------------TVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 299 ------------------------------------------------------------~v~~~al~~L~~l~~~~~~~ 318 (528)
.++..||-++-+++..-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333211111
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
...+-...+..++++++..+ +..|+..+..+|+|+.-........++..|+|..+..++.+.++.+|..+.|+|.++..
T Consensus 412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 11122345778899999888 99999999999999998777778889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 399 GGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 399 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+++......+...-....+..+.+++|+.++++++..+.|+....+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 8876666666666667788889999999999999999999987643
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=1.7e-13 Score=124.88 Aligned_cols=237 Identities=18% Similarity=0.188 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 240 VRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 240 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35778899999985 58999999999999987654 46677888899999999999999999999999999999876654
Q ss_pred hHHHhccCChHHHHHHh-cccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLL-TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.. ++. .++.+.+.+ ..+.+..++..++.+|.|++..+.. +.++ .+.+|.++.++..++..+|..++++|.|++
T Consensus 89 ~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 EQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 42 222 344555543 3333788999999999999764332 2333 247999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhch---hccCCcchhhHHHhhhcc-cHHHHHH
Q 009700 398 SGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADK---EAGSTTANVYSEMIDECD-GLDKIEN 472 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~---~~~~~~~~~~~~~l~~~g-~~~~l~~ 472 (528)
. ++.....++..+++..|+.+++.. +.++...++..+.+|.....+.. .......++....+.+.+ ..++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9 578889999999999999999885 67788888999999876544332 112333555667777777 7789999
Q ss_pred HhcCCCHHHHHHH
Q 009700 473 LQSHDNNEIYEKA 485 (528)
Q Consensus 473 L~~~~~~~v~~~a 485 (528)
|..|+|++|+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999998764
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-13 Score=134.85 Aligned_cols=351 Identities=14% Similarity=0.172 Sum_probs=239.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
.+..+...++.++--.-..+..+++..+-..+. .++|.|+++|.+++ ...++-|..+|..|+.++.+.-+.=..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wp-----elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHWP-----ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccch-----hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 334444444544444444445555544333342 36999999999988 789999999999999977665443211
Q ss_pred ----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 157 ----HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 157 ----~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.-.+|.++.+.+++++.+|..|+.++..+.-..+..-..-+ ..++..+..+- .+.+++++.+.|.++..|..-.
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 13689999999999999999999999988755443211111 12455555555 7889999999999999999888
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--HHHHHHHHhCcHHHHHHHhcCCC-------------
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLLHSS------------- 297 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~------------- 297 (528)
+......+.++++.++...+..|++|.-.||.....+++.+. +.....+. .++|.|+.-+...+
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccc
Confidence 777777889999999999999999999999999999988752 22222222 35565554433211
Q ss_pred -------------------------------------------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 298 -------------------------------------------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 298 -------------------------------------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
|.+|...+.+|..++....+. +++ -++|.|.+.
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~~ 401 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKEH 401 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHHH
Confidence 344544444454444322211 111 245555566
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCC
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGC 413 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~ 413 (528)
|.+. .-.+|+.+..+++.++.|+....-.-+ ..++|.|+.+|.++.+-||.-.||+|+..+.+.-.+ .-+++.. +
T Consensus 402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--v 477 (885)
T KOG2023|consen 402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--V 477 (885)
T ss_pred cCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--H
Confidence 6666 889999999999999987554332222 137999999999999999999999999887643211 1233332 4
Q ss_pred hHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 414 IKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 414 l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..|...+-.++.++++.++.++..+-+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 5566666667889999999999988776543
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.3e-13 Score=125.62 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=164.7
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
++.+-+..|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|..+++.+++.|+++|.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4566789999999977669999999999999877 78899999999999999999999999999999999999987765
Q ss_pred HHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 192 CRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.+..+.. .++.+++.+... -+..++..++.+|.+|+..... ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444433 467777665333 3778999999999999876422 3345678999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcC
Q 009700 271 DGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTG 314 (528)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~ 314 (528)
.++. ....++..+++..++.++... +..+...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8754 667788888999999999885 677899999999999654
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.9e-14 Score=135.59 Aligned_cols=350 Identities=15% Similarity=0.150 Sum_probs=230.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHH-HHh---cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEE-VIR---AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~---~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
.+|.|.++|.+++...+.-|..+|.+++.... .-.+. ... .-++|.++++.++++ +.+|..|+.|+..+.-..+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence 47888889999998899999999999976531 11110 000 236899999999998 9999999999998877443
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.....-+ ...+..+..+-...++++|.+.+.+|.-+....+.- -.-.-.++++.++... ++.++++.-.||.....+
T Consensus 207 qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~t-qd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRT-QDVDENVALEACEFWLAL 283 (885)
T ss_pred HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence 3322222 235666777777789999999999999998666531 1111234567777776 777888999999999999
Q ss_pred cCCCCCCChh----hhHHHHHHHHHHhcCCC-------------------------------------------------
Q 009700 229 CRGKPPAPFD----QVRPALAALQHLIFSSD------------------------------------------------- 255 (528)
Q Consensus 229 ~~~~~~~~~~----~~~~~l~~L~~ll~~~d------------------------------------------------- 255 (528)
+..+ .... .+..++|.|+.-+..++
T Consensus 284 aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 284 AEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred hcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 9885 2222 33566676654332111
Q ss_pred -------HHHHHHHHHHHHhhccCChHHHHHHHHhC----cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 256 -------EEVLTDACWALSYLSDGTNDKIQAVIEAG----VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 256 -------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
..++...+.+|--++ .+.... ++|.|-..|.+++|.+++.++-++|.++.|.-...-.-+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L- 432 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL- 432 (885)
T ss_pred cccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-
Confidence 112222222222222 222223 455555666778999999999999999987643221111
Q ss_pred cCChHHHHHHhcccCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 325 NQGLPRLYQLLTQNYKKSIKKEACWTISNITAG--SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
..+++.++++|.+. .+-||.-+||+|+..+.- ..+ .+..+. .++..|++.+-+++.+|++.||.|+..+-.....
T Consensus 433 peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 433 PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 14788999999998 999999999999998751 111 212221 2555666667788899999999999999887666
Q ss_pred HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 403 EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+...++-. ++..|+..+..-..+-.....+++..+....
T Consensus 510 eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 510 ELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred hhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 66555433 4555555554433333345566777776654
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=2.2e-12 Score=140.76 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=218.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.|+..|.++++.+|..|+..|..+.. .+.++.|+..|.+++ +.++..|+..|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence 46889999999999999999999987632 235899999998887 999999999998885411
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
...+.|...|.++++.+|..++.+|+.+.... ...++..| .++++.++..++++|..+-.
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence 12367788899999999999999999874222 23466777 78899999999999997621
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.+.|..++.+++..|+..++.+|..+..... ..++.|..+++++++.++..|+.+|+.+.
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 1346678899999999999999999875432 23678889999999999999999999885
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
... .....+...|.++ ++.||..|+++|+.+.. ...++.|+.+|.+++..||..|+++
T Consensus 804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 421 1224678889888 99999999999998742 1356889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
|..+. +++. ..+.|...+++.|+.++..+..+|..
T Consensus 862 L~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99962 2333 25667788999999999999988853
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=3.4e-11 Score=125.61 Aligned_cols=328 Identities=17% Similarity=0.191 Sum_probs=223.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.+.+++...+..+--.+..+... ++..-.+ ++..+.+=|.+++ +.++..|+++++++.. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 567888888888988888887777777654 2221121 4667777788887 8999999999999884 55554
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+ ++.+.+++.++++.+|..|+.++..+....|+. +... .++.+..++ .+.++.++..|+.++..+ ...
T Consensus 114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 43 588888999999999999999999998766652 2222 477788888 777889999999999988 221
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+..........+..|.+++...++-.+..++..+..++...+..... ..+++.+..++.+.++.+...|++++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11111445666777777778888999999999999888766544311 346777888888888888888888888776
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
.... .-..+++.+..+|.++ ++.+|..++..|..++...+..+. .....+..+..+.+..+|..++..
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHHH
Confidence 6433 1124567888888877 888888888888888775533221 122223333336778888888888
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhc-CCCChHHHHHHHHHHHHHHHhh
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
|.+++.. ..... +++.|...+ +..+++++..++..+..+....
T Consensus 328 L~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 328 LYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 8888762 22222 344555555 3345556666666665555443
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=1.3e-11 Score=134.65 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=217.9
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
....++.|+..|.+++ +.++..|+..|..+.. .++++.|...|.++++.+|..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 3456789999999888 9999999999998753 2467899999999999999999999998853222
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
..+.+...| .++++.++..++.+|..+.... ...++..|.++|+.++..++++|..+-.
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 124666777 6788999999999998875321 2356778899999999999999997632
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.+.|..++.++++.++..++.+|+.+..... ..++.|..++.++ ++.+|..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 1346678999999999999999998865322 2366788999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~ 432 (528)
++... + .+++.++..+.+.++.||..|+++|..+.. ...++.|..+|+++++.++..+
T Consensus 801 ~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHH
Confidence 98432 1 123567788999999999999999987643 1246889999999999999999
Q ss_pred HHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 433 LEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 433 l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
..+|..+ ...+ ...+.|.....+++.+|+..|...|+
T Consensus 859 ~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999885 1111 11356777888999999999988875
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.50 E-value=6.5e-13 Score=108.86 Aligned_cols=119 Identities=38% Similarity=0.622 Sum_probs=110.7
Q ss_pred HHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009700 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 110 ~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 189 (528)
.+++.|+++.|+++|.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999999888 899999999999999988999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 88888888999999999999 67788999999999999873
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.47 E-value=7e-10 Score=116.08 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=205.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.++.+.|.+.+...+..|++.+......+ .+. +.+.+..+.++.+++ .+++.-..-.+.+++...++..-
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence 4566777888888888888887766555543 222 234677788888887 89999999999999886665432
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. ++..|.+=+.++++.+|-.|++++++|-. +...+. .+.++.+.+ .+.++-|++.|+.++..+....
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2 46788888889999999999999999843 222222 456677777 7889999999999999998765
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
|. .....+.++.|..+|.+.|+.|..+|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|....
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 43 223356778888999999999999999999999876554332 22346777888887766667777777775543
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
...+... ..++..+...|++. ++.|.-+|+.++.++... +++.+..++. .+-++|+.+ .++++++|--++.
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr 319 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCK 319 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHH
Confidence 2222211 24677888889888 899999999999998753 2333333221 233555555 3456677766666
Q ss_pred HHHHhcC
Q 009700 392 AISNATS 398 (528)
Q Consensus 392 aL~nl~~ 398 (528)
.|.-++.
T Consensus 320 ~I~~i~~ 326 (746)
T PTZ00429 320 NIHALLV 326 (746)
T ss_pred HHHHHHH
Confidence 6654443
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.47 E-value=5.9e-10 Score=116.64 Aligned_cols=260 Identities=13% Similarity=0.077 Sum_probs=185.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.+.++|.+++......+.+++.. .+....+ .++.|.+=+.+++ +.+|-.|++.++++.. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 467788888899999888888788777654 2221111 3777888888888 9999999999999876 44443
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +++.+.+.|.+.++-||..|+.++.++....|+ .+.+.+.++.|..+| .+.++.+..+|+.+|..++...
T Consensus 140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 3 357788889999999999999999999876664 445667888888888 7899999999999999998765
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+. ........+..|+..+..-++..+..++.+|........... ..++..+...|++.++.|...|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 233445666667777766677777777777765432222211 247788889999999999999999999988
Q ss_pred cCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 313 TGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 313 ~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
...+ .....+.. .+...++.++ ++ ++.++..++..|.-+....+
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 6432 22211111 1224455553 44 67788887777766655444
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.46 E-value=1.6e-10 Score=120.57 Aligned_cols=327 Identities=18% Similarity=0.175 Sum_probs=237.2
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 76 SMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 76 ~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.+. +...+..++..+..+...+ .+. .-+.+..++++.+.+ ...+.-+--.+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444544 6667777777766555443 222 245788899999777 899999988999998877763332
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
++..+.+=|.++++.++..|++++++++ .++..+. .++.+.+++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 4677888899999999999999999997 3333332 467778888 78889999999999999988754
Q ss_pred CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.... .. .++.+..++.+.|+.++..|+.++..+ ..++.....++. .++..|..++...++-.+..+++++..++.
T Consensus 147 ~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 3211 12 689999999999999999999999999 333322111222 356667777788899999999999999987
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+..... ..+++.+..++++. ++.|..+++.++..+... +. .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66554411 34677889999888 999999999999988653 33 2234788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 394 SNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 394 ~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..++... +... . .....+..+..++|..++..+++.|..++....
T Consensus 292 ~~l~~~~-~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 292 SQLAQSN-PPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHHCCHC-HHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred HHhhccc-chhh----h-hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 9998854 2221 1 112223333347889999999999998887543
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=1.8e-12 Score=106.22 Aligned_cols=118 Identities=36% Similarity=0.525 Sum_probs=109.8
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 280 VIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
+++.|+++.++.++.+.++.++..++++|++++...+.....+++.|+++.+.++|.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999999888777888899999999999998 99999999999999999887
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.....+.+.|+++.|++++...+..++..++|+|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=3e-10 Score=110.44 Aligned_cols=323 Identities=14% Similarity=0.178 Sum_probs=231.0
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhc-----CChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 158 GAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSH-----GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 158 g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-----g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+..++.+|.. ..+++.+.++..+..+..+.|.....+.+. ....+++.+| ..++.-+...++.+|+.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 356677777766 668899999999999998887655555543 4677888888 567888999999999998766
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHH
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~ 307 (528)
.+.... ......++.+...+.+. +...+.-++.++..+...+. ....+.+.++++.|+.+|+.. +..++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 533222 12233455666666654 46667777788988887765 456677778999999999863 45788999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHHccC
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS------RSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
++-++-..+ ........++++.++.+++.....++.+-++.++.|+...+ ......+++.|+.+.+-.+...+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999887555 34455668999999999988768889999999999998732 22344566777666554443332
Q ss_pred --ChHHHHHHHHHH-------HHhc--------------CCCC--------HHHHHHHHHC--CChHHHHhhcC-CCChH
Q 009700 382 --EFEVKKEASWAI-------SNAT--------------SGGT--------REQIQFLVSQ--GCIKPLCDLLV-CPDPR 427 (528)
Q Consensus 382 --~~~v~~~a~~aL-------~nl~--------------~~~~--------~~~~~~l~~~--~~l~~L~~ll~-~~~~~ 427 (528)
|+++....-..- ..++ .+.+ .+....+.++ .+++.|+.+|+ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 555543221111 1111 1111 2344555544 35789999994 67888
Q ss_pred HHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 428 IVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 428 ~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
++..||.=|+.+++..+.+ ...+++.|+-+.+..|++|+|++|+..|...+.++..
T Consensus 370 ~laVAc~Dige~vr~~P~g-----------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRG-----------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccH-----------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999987654 4567799999999999999999999999988887643
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.41 E-value=2e-10 Score=112.94 Aligned_cols=356 Identities=17% Similarity=0.158 Sum_probs=245.7
Q ss_pred CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChH
Q 009700 126 RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALM 203 (528)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 203 (528)
+.+ ++....|..-..|.+.++++....+++.|+++.++.+++. +.++.....+.+++..+.......+.+.+.+.++
T Consensus 20 ~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 20 HLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred cCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 444 6777888899999999999998899999999999999877 4567776777777777766666778888999999
Q ss_pred HHHHhhccchh-hHHHHHHHHHhhhhcCCCCCCChh---hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH
Q 009700 204 PLLAQLNEHSK-LSMLRNATWTLSNFCRGKPPAPFD---QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA 279 (528)
Q Consensus 204 ~Ll~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 279 (528)
.+++++ .+.+ ..++..++.++.++....+..... ....+++.+..++..+...+...-+....+++... +....
T Consensus 99 ~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~I 176 (678)
T KOG1293|consen 99 KLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLI 176 (678)
T ss_pred HHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhe
Confidence 999999 5555 889999999999998876444332 33555666655555455555555666666666554 34455
Q ss_pred HHHhCcHHHHHHHhcCCChhhHHHHHHHHh---HhhcCCcchhHHH----hccCChHH--HHHHhccc------------
Q 009700 280 VIEAGVCPRLVELLLHSSTTVLVPALRTVG---NIVTGDDTQTQCV----IDNQGLPR--LYQLLTQN------------ 338 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~---~l~~~~~~~~~~~----~~~~~l~~--L~~lL~~~------------ 338 (528)
...+|+.+.+.-++.+.+...+..|+.+++ ++...++.....+ .+.|+.+. +..+++++
T Consensus 177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl 256 (678)
T KOG1293|consen 177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECL 256 (678)
T ss_pred eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHH
Confidence 677788888888877777777888888887 5554444322211 12222211 11111110
Q ss_pred --------------------------------------------------------------------------------
Q 009700 339 -------------------------------------------------------------------------------- 338 (528)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (528)
T Consensus 257 ~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~ 336 (678)
T KOG1293|consen 257 VPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFI 336 (678)
T ss_pred HHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 339 ----------------------------------------------------YKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 339 ----------------------------------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.+...+..||-++-+++..-......+-
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~ 416 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK 416 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0111223333333333221111111112
Q ss_pred HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 367 EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 367 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
...+..+|+.++..++..|+..+..+|+|++..-+ .....++..|+++.+..++...++.++..++|+|++++-.+...
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 35678899999999999999999999999987543 34567789999999999999999999999999999998766543
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+ .. +... =+...|..+.++++..|++.+.+++.++-.+
T Consensus 496 ~k-----~~-~~~k----i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 496 EK-----FQ-LLAK----IPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HH-----HH-HHHH----hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 32 11 1212 2356778889999999999999999998776
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.38 E-value=5.6e-10 Score=108.56 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=221.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHh-----cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009700 74 IPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIR-----AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT 147 (528)
Q Consensus 74 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 147 (528)
...++..+.. ...++....+..+..++... +.....+.+ ......++.+|..++ .-++..|+.+|+.+....
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 4566666663 45667777777788887763 233344444 245677788888777 789999999999998744
Q ss_pred hhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTL 225 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L 225 (528)
+.........-.++.+...|.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +..++.+++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3321111111133455556655 347788889999999976655 8998888889999999996544 678899999999
Q ss_pred hhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCC------hHHHHHHHHhCcHHHHHHHhcC---
Q 009700 226 SNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLLH--- 295 (528)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~--- 295 (528)
+-|+...+........++++.++.+++.. .+.+..-++.++.|+...+ ......+++.|+++ ++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY 290 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence 99988764333333468999999999854 6889999999999998743 22344566666654 5555543
Q ss_pred CChhhHHHHHHHHhHh--------hcC--------------Ccch---------hHHHhc--cCChHHHHHHhcccCchh
Q 009700 296 SSTTVLVPALRTVGNI--------VTG--------------DDTQ---------TQCVID--NQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l--------~~~--------------~~~~---------~~~~~~--~~~l~~L~~lL~~~~~~~ 342 (528)
.++++... +..|... ++. ++.+ ...+-+ ..++..|+++|..+.++.
T Consensus 291 ~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 34433221 1111111 110 1111 111111 246788999996544888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+..-||.=|+.++...|.....+-+.|+=..++++|.++|++||.+|+.|+..+..
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888888777789999999999999999999999999987754
No 44
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.38 E-value=2.1e-13 Score=104.59 Aligned_cols=89 Identities=44% Similarity=0.642 Sum_probs=59.8
Q ss_pred CCCchHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchh---hh-hhHHHhhccHHHHHHH
Q 009700 6 GSRTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTE---AN-ASIEKKLESIPSMVQG 80 (528)
Q Consensus 6 ~~~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~---~~-~~~~~~~~~l~~l~~~ 80 (528)
+...+.|++.||+ |.+++++|+||++..++|||+||++.|.|||+.........+.. .. .........++.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 3467899999999 68999999999999999999999999999999865443321100 00 0011122357899999
Q ss_pred hcCCCHHHHHHHHH
Q 009700 81 VLSENSGLQLEATT 94 (528)
Q Consensus 81 l~s~~~~~~~~a~~ 94 (528)
+.|+|+..++.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999999875
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.4e-10 Score=115.04 Aligned_cols=342 Identities=16% Similarity=0.155 Sum_probs=244.0
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.+|.|+..|+. .+.++...|+++|..++..- ++....+++.+.||.|+.-|..-...++.++++.+|-.|+. ..-
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hcc
Confidence 47889999986 46899999999999998875 56677888999999999888765558999999999999998 344
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+++.|++...+.+|+--+..+++.|+.+..|+|..- ++--..+.+ .+|.|..+| ...+....++++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 67889999999999998888999999999999999432 222234444 688888888 78888899999999999887
Q ss_pred CC-CCCCh---hhhHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh----
Q 009700 231 GK-PPAPF---DQVRPALAALQHLIFSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST---- 298 (528)
Q Consensus 231 ~~-~~~~~---~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---- 298 (528)
.. +.+.. ..-.+++....+++...+ ..+..-.++.+..++.+.+-....+...++...|..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 76 33322 122567777777776442 3445556777777887777666666666777766666643110
Q ss_pred -----------hhHHHHH---------------------------------------------------HHHhHh-----
Q 009700 299 -----------TVLVPAL---------------------------------------------------RTVGNI----- 311 (528)
Q Consensus 299 -----------~v~~~al---------------------------------------------------~~L~~l----- 311 (528)
.+.+... +++..+
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 0000000 111100
Q ss_pred --------hcC---------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCcHH
Q 009700 312 --------VTG---------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE-ANIIA 372 (528)
Q Consensus 312 --------~~~---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~ 372 (528)
-.+ .++..+.++ ..+++.|+++..+.-++.||..++.+|..+.. .+.+.++.++. .++-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 000 000011111 13678888888877789999999999999876 57888888885 44555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
.+-.+|.+.+..|..-|+...--+...-+.-+...+...|++..+-++..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 66678888888887777777666666555566778888888888888776
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.1e-10 Score=110.59 Aligned_cols=364 Identities=16% Similarity=0.221 Sum_probs=243.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH---HHHHh--
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT---RVVIE-- 156 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~i~~-- 156 (528)
+++|.+++..|+.+|.++.+-. .......+...+++.-+.-+.+++ +++..+++...++++...-+.. ....+
T Consensus 227 q~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4678899999999999998865 556666666667888888888877 8999999999998886321100 00111
Q ss_pred -------------cCChHHHHHhhC---------------------------------------------CCCHHHHHHH
Q 009700 157 -------------HGAVPKFVQLLG---------------------------------------------SASDDVREQA 178 (528)
Q Consensus 157 -------------~g~i~~L~~lL~---------------------------------------------~~~~~i~~~a 178 (528)
.+++|.|+++|. +++..-++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHH
Confidence 145677777764 2345556666
Q ss_pred HHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCH
Q 009700 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDE 256 (528)
Q Consensus 179 ~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~ 256 (528)
+.++|.+-......+..-+..++++.++.++ .++..-++..+.|+|..++..-|... .....+.++.++.-|. +.+
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DeP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCc
Confidence 6677766655444444445567889999999 58888889999999999998875332 2334566666666554 468
Q ss_pred HHHHHHHHHHHhhccCChHHH---------HHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 257 EVLTDACWALSYLSDGTNDKI---------QAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~---------~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
.+..++||++.+|++...+.. ..+... ++..|++.-.. .....|..|..+|+.++...+......+.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999985422110 011111 33333333332 44678999999999999877654322221
Q ss_pred cCChHHHHH---------HhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHH
Q 009700 325 NQGLPRLYQ---------LLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASW 391 (528)
Q Consensus 325 ~~~l~~L~~---------lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 391 (528)
++...+.. .+.... -..++...|.+|..+.+.....+....+ .++..+++++.++ +.-+..+|..
T Consensus 542 -~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~l 619 (859)
T KOG1241|consen 542 -KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFL 619 (859)
T ss_pred -HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHH
Confidence 22222222 232220 1357777888888887643334444443 4788899999884 5678889999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhc-CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
+++.++..-.+.+.+|+-. +.++|..-| +..+..+...+...+..+++.-+.. .++|+..+
T Consensus 620 aV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~-------i~py~d~~ 681 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPA--FKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD-------ILPYCDEL 681 (859)
T ss_pred HHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHH
Confidence 9999888766778888655 778887777 5567778888888888888766543 56677666
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8.6e-10 Score=110.03 Aligned_cols=327 Identities=18% Similarity=0.183 Sum_probs=222.3
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+..++...... +..+|+.|+.+|.+-+...+.....+.-..=++...++.-++++ .+++..|..||..|.+-..+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666643 45689999999987765432112222222334555567767777 8999999999999999666666
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH----HH--------------HHHhcCChHHHHHhhccc-
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC----RD--------------LVLSHGALMPLLAQLNEH- 212 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~----~~--------------~~~~~g~i~~Ll~ll~~~- 212 (528)
..-+....++.-+.-+.++++++.-+++...+++|...-+. .+ .-.-.+++|.|+++|.+.
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 66565566777777888999999999999999998532110 00 001124677788888541
Q ss_pred -----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 213 -----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 213 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
++......+..+|.-+++.... ..+..++|.+-.-++++|..-++.+..+++.+..++......-+-.+.++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 2334555555555555443211 23447788888888999999999999999999988765554445557899
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH----
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI---- 362 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~---- 362 (528)
.++.++.+++..++..+.|++|.++.+.+... ........++.++.-|.+ .|.+-..+||++.+++.+..+..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999998888899999999999998776422 122233556667777755 68999999999999984222111
Q ss_pred -----HHHHHcCcHHHHHHHHcc---CChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 363 -----QAVIEANIIAPLVYLLQH---AEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 363 -----~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
..+.+ .++..|+..-.. .+..+|..|..||..++...+.+....
T Consensus 488 qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 488 QTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 01111 134444444333 357899999999999999876655444
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.31 E-value=1e-10 Score=115.78 Aligned_cols=351 Identities=14% Similarity=0.122 Sum_probs=231.9
Q ss_pred HHHhhcc---HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHH
Q 009700 67 IEKKLES---IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTN 142 (528)
Q Consensus 67 ~~~~~~~---l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~ 142 (528)
+.+++++ +.+++..++++.+..+.+.+..+.++.+.-+...+++-.+..++..++..++.++ ...+-......+.+
T Consensus 708 ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~ 787 (1172)
T KOG0213|consen 708 IAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN 787 (1172)
T ss_pred HHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 3445553 6778888889989899998888888887654444555555556666676666544 23344555555555
Q ss_pred HhcCC-hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH--HHHHhcCChHHHHHhhccchhhHHHH
Q 009700 143 IASGT-SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR--DLVLSHGALMPLLAQLNEHSKLSMLR 219 (528)
Q Consensus 143 l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~Ll~ll~~~~~~~~~~ 219 (528)
-..+. .... ..++..++..|.+.++.+|++|+..++.++.--..+. +.+-..|. .|...| ....+++.-
T Consensus 788 ~lg~r~kpyl-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLg 859 (1172)
T KOG0213|consen 788 ALGGRVKPYL-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLG 859 (1172)
T ss_pred HHhhccccch-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHH
Confidence 43321 1111 1245677788999999999999999999973322221 12222232 245566 666778777
Q ss_pred HHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh
Q 009700 220 NATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298 (528)
Q Consensus 220 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 298 (528)
..+.++..++..- -.....-+.+++|.|...|++..+.|+++++..++.++...++.+..---..+.=.|+.+|+..+.
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7776666655332 122233357899999999999999999999999999998877643322222355568888999999
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
.++..|..++|.|+.. +-...++..|+.-|+.. +...|.-...+|+-.+..+.. -.++|.|+.-.
T Consensus 940 ~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneY 1004 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEY 1004 (1172)
T ss_pred HHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhc
Confidence 9999999999999863 22223445555555544 333333333333333322221 13788888888
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 379 QHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
..++..|+.-++.+++.+......-...|+.. +.+.|.+.|...|+.-+..+..++..+.-.
T Consensus 1005 rtPe~nVQnGVLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 88899999999999999987543334445443 677788888888988888888888887754
No 49
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1e-07 Score=94.92 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=167.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
-+.++.+|.+.-+-++..|+..+.++.-.. ++..+ ..+|.|++-|.++| |.++..|+.+++.++..+|.+.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence 467788899999999999999888887653 22222 24899999999999 999999999999999988766432
Q ss_pred HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh--cC
Q 009700 154 VIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF--CR 230 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l--~~ 230 (528)
.-|.+.++|.. .+.=+....+..+++++--.|..... .+++|..++....-.++...|..++..- +.
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 45888888865 44445566788999998777765544 6899999996555666777776665433 33
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
+.+ .....+.-+++.|--++.+.|+.+..-++.+++.+....+..++. .-+.++.+|.+.+++++..|+..+..
T Consensus 289 g~~-d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GMS-DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCC-CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 322 334455678888888999999999999999999999877755544 34678899999999999999999988
Q ss_pred hhcCC
Q 009700 311 IVTGD 315 (528)
Q Consensus 311 l~~~~ 315 (528)
++...
T Consensus 363 mVskk 367 (877)
T KOG1059|consen 363 MVSKK 367 (877)
T ss_pred Hhhhh
Confidence 88643
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.14 E-value=1.3e-08 Score=95.61 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=222.6
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHH-------hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVI-------RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~ 144 (528)
.+..++..+... .++...-.+..+..+++.. .....++ ..-.-+.++.+|...+ .-+...+.++++.++
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 466777777753 3556666777788888774 3322222 1234667788888887 778887999999988
Q ss_pred cCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh-ccchhhHHHHHHH
Q 009700 145 SGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL-NEHSKLSMLRNAT 222 (528)
Q Consensus 145 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll-~~~~~~~~~~~a~ 222 (528)
.-...........-....|...+++ .+.+....|+++|..+....+ +|..+....++..++..+ ....+..++.+.+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 7322211110000012344445555 677888899999999987665 788888888889999888 4555788999999
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCh------HHHHHHHHhCcHHHHHHHhcC
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~ 295 (528)
.+++.|+..++........+.++.|..++++. .+.|..-++.++.|+++..+ +....++..++.+.+-.+...
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r 301 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER 301 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence 99999998865444444568899999998854 68899999999999998774 344455665555444444332
Q ss_pred --CChhhHHHHHHHHhH-------hhcC--------------Ccc---------hhHHHh--ccCChHHHHHHhcccCch
Q 009700 296 --SSTTVLVPALRTVGN-------IVTG--------------DDT---------QTQCVI--DNQGLPRLYQLLTQNYKK 341 (528)
Q Consensus 296 --~~~~v~~~al~~L~~-------l~~~--------------~~~---------~~~~~~--~~~~l~~L~~lL~~~~~~ 341 (528)
.++.+....-..-.. +++. ++. ....+. +..++..|+.+|..+.+|
T Consensus 302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp 381 (442)
T KOG2759|consen 302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP 381 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence 344333322111111 1111 110 011111 124788899999888679
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 342 SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 342 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.+..-||.-|+......|+....+.+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999888899999999999999999999999999987765
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.4e-07 Score=94.90 Aligned_cols=326 Identities=16% Similarity=0.193 Sum_probs=238.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSP--- 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~--- 190 (528)
-|+.|++-+.+..-.+-|..|++.|..++. +++..+... ++++|+..|+. .++++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 489999998877667889999999999987 677666654 58889999977 679999999999999985431
Q ss_pred ---h----------HHH-HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhh---hHHHHHHHHHHhcC
Q 009700 191 ---S----------CRD-LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ---VRPALAALQHLIFS 253 (528)
Q Consensus 191 ---~----------~~~-~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~l~~L~~ll~~ 253 (528)
. +.+ .+...+.|..++..+ ...|-.++.++...++++....|...... ...++..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 112 233456677788888 77788999999999999988875433222 25678889999998
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS----STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
.-+.++.+++..|..++.+++...+.+.-.+++.+|..++... ..-|...|+..|-|+...+......+.+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8899999999999999998876555555568999999999763 235788899999999998888888889999999
Q ss_pred HHHHHhcccC--ch--------hH--HHHHHHHHHHHhc-CC----HHHH-HHHHHcCcHHHHHHHHccC--ChHHHHHH
Q 009700 330 RLYQLLTQNY--KK--------SI--KKEACWTISNITA-GS----RSQI-QAVIEANIIAPLVYLLQHA--EFEVKKEA 389 (528)
Q Consensus 330 ~L~~lL~~~~--~~--------~v--~~~a~~~L~nl~~-~~----~~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a 389 (528)
.|.++|.-.. +. ++ ...++.++..+.. ++ ..+. +.+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885431 21 11 2345555555554 22 2333 3455788999999998877 47899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHC----C------ChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhch
Q 009700 390 SWAISNATSGGTREQIQFLVSQ----G------CIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~----~------~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
..++.+.+.++...+ .++.+. + ++-.++.+..+ .....+..++.++..++-...+.+
T Consensus 338 iitvAevVRgn~~nQ-~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 338 IITVAEVVRGNARNQ-DEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHhchHHH-HHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 999999998653322 333321 1 12223333333 455678888888888887665543
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.7e-07 Score=92.94 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=239.8
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCCh-
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTS- 148 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~- 148 (528)
+.|+.|+..+.+. -.+-|..|+..|..+... .+..+... +++.|++.|..+ .++++...++..+.++.+..+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4688999888864 467899999999877543 34444444 478889888754 368999999999999888442
Q ss_pred -----hh----------HHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHh-cCChHHHHHhhc
Q 009700 149 -----EH----------TRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLS-HGALMPLLAQLN 210 (528)
Q Consensus 149 -----~~----------~~~i~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~-~g~i~~Ll~ll~ 210 (528)
+. .+.++ ..+.|..++..+...+-.+|..++..|.++.... ++.++.+.. .-+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 22333 3578999999999999999999999999987554 456666554 34688999999
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcCC---C-HHHHHHHHHHHHhhccCChHHHHHHHHhCc
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFSS---D-EEVLTDACWALSYLSDGTNDKIQAVIEAGV 285 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 285 (528)
.+..+.++..++..|+.|.++.+..... ...+++..|..++... | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 7778889999999999999998665554 4488999999999754 3 358899999999999988888888888899
Q ss_pred HHHHHHHhcC---CC-----hh-----hHHHHHHHHhHhhcCCc-----ch-hHHHhccCChHHHHHHhcccC-chhHHH
Q 009700 286 CPRLVELLLH---SS-----TT-----VLVPALRTVGNIVTGDD-----TQ-TQCVIDNQGLPRLYQLLTQNY-KKSIKK 345 (528)
Q Consensus 286 l~~L~~lL~~---~~-----~~-----v~~~al~~L~~l~~~~~-----~~-~~~~~~~~~l~~L~~lL~~~~-~~~v~~ 345 (528)
+|+|.++|.. .+ |. -...++.++..++.-.. .+ ...+..++++..|..++-++. ..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988764 22 21 13346677776664321 12 235667889999999887763 578999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----------cHHHHHHHHcc-CChHHHHHHHHHHHHhcCCCC
Q 009700 346 EACWTISNITAGSRSQIQAVIEAN----------IIAPLVYLLQH-AEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 346 ~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~ 401 (528)
++..+++++..++......+.+.. ++-.++.+..+ ..+..|..+.+++..+...+.
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 999999999998888777776521 11122233333 357889999999998887543
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.10 E-value=7.9e-08 Score=90.38 Aligned_cols=280 Identities=13% Similarity=0.140 Sum_probs=195.1
Q ss_pred ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHH
Q 009700 201 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 201 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
.-.+.+.++ ...+.-+.....|+++.++...+..... ...-....|-..+++ .+.+...-+.++|..+...+. ...
T Consensus 115 ~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~ 192 (442)
T KOG2759|consen 115 EWLSFLNLL-NRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRY 192 (442)
T ss_pred chHHHHHHH-hcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhh
Confidence 356778888 6667777777899999888765333222 222334445555555 567777788889988887765 444
Q ss_pred HHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 279 AVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.++..+++..++..+.+ .+-.++...+.|++-++-.. ...+.+...+.++.|..++++....+|-+-++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55556677778777733 45678888999999887644 4445666779999999999887678899999999999997
Q ss_pred CCH------HHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHH----------HHHh-----------cCCCC------
Q 009700 357 GSR------SQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWA----------ISNA-----------TSGGT------ 401 (528)
Q Consensus 357 ~~~------~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a----------L~nl-----------~~~~~------ 401 (528)
..+ .....++..++.+.+-.+-..+ |.++....-.. |+.+ ..+.+
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 553 4445566666666555444332 45544322211 1111 11111
Q ss_pred --HHHHHHHHHC--CChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC
Q 009700 402 --REQIQFLVSQ--GCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH 476 (528)
Q Consensus 402 --~~~~~~l~~~--~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~ 476 (528)
.+.+..+.++ .+++.|+.+|+.+ ||.+..+|+.=|..+.+..+.+ ...+++.||-+.+..|.+|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-----------k~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-----------KAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-----------hHHHHHhchHHHHHHHhcC
Confidence 2344555544 5689999999864 5888899999999999988764 5678899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC
Q 009700 477 DNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 477 ~~~~v~~~a~~ii~~~~~ 494 (528)
+|++|+.-|...+.++..
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 999999999888777643
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-08 Score=93.98 Aligned_cols=189 Identities=20% Similarity=0.232 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
.+.+-+..++.-|..++..-+ +...++..|+...++..+.+.+..+|..|+++||.++.+++...+.+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356777788888888886644 5677888899999999999999999999999999999999998889999999999999
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH--AEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
.|.++.+..+|..|+++++.+..+++.....+...+....|..++.+ .+..++..|+..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 99977577888999999999999999999999988889999999999 578889999999999988532 333344566
Q ss_pred CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++...+..+..+.+.++.+.++.++...+..-.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 778888888888888888888888877776544
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.6e-08 Score=92.35 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=153.2
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+.+++.+..|+..|..++-. -++...++..|+++.++.++.+++ ..++..|+|+++.++..+|.....+++.|+++.
T Consensus 94 s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 56788899999999988765 677888899999999999999988 999999999999999999999999999999999
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 163 FVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 163 L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
|+..|.+ ++..++..|+.+++.+....+.....+...++...|...+... .+..+++.++..+..+............
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999987 4567889999999999999888888888888899999999433 6788899999999999987633333332
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 241 -RPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 241 -~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
.+.-..+..+..+.+.++.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3444455566666777887777777665544
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=8.2e-09 Score=99.16 Aligned_cols=223 Identities=18% Similarity=0.250 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHh------CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ 326 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 326 (528)
+.++++..+++..+..+....+...+.+... .....++.++.+++..+...|+++++.+....+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 4688999999999999988777666665552 3678888899999999999999999999987765443322 34
Q ss_pred ChHHHHHHhcc----cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH------cc-CChHHHHHHHHHHHH
Q 009700 327 GLPRLYQLLTQ----NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL------QH-AEFEVKKEASWAISN 395 (528)
Q Consensus 327 ~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~~~a~~aL~n 395 (528)
.++.+++++.+ + +..++..|+.++.++.. .+..+..+++.++++.+..++ .+ ....++-+++.++.-
T Consensus 147 ~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 55666666654 4 56778999999999975 788888888999999999999 22 257788899999999
Q ss_pred hcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh
Q 009700 396 ATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ 474 (528)
Q Consensus 396 l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~ 474 (528)
++. +++.+..+.+.++++.|+++++. ...++++.++.+|.|++....+. +...+-.+|++..++.|+
T Consensus 225 LSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 225 LSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHH
T ss_pred Hhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHh
Confidence 988 67888999988999999999875 67789999999999999876542 455666899999999997
Q ss_pred --cCCCHHHHHHHHHHHH
Q 009700 475 --SHDNNEIYEKAVKLLE 490 (528)
Q Consensus 475 --~~~~~~v~~~a~~ii~ 490 (528)
.-+|+|+.+.-..+-+
T Consensus 293 ~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp SS--SSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 4578888876655543
No 57
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.02 E-value=1.9e-09 Score=105.01 Aligned_cols=266 Identities=16% Similarity=0.131 Sum_probs=178.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH--HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCC
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC--RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA 235 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~--~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~ 235 (528)
++..++.+|.++.+.+|+.|+...+.++.--..+ -+.+...|. .|..-| ....+++.-..+.+++.+...- -..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677888999999999999999988886221111 112222232 244455 5566777666666665554322 111
Q ss_pred ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 236 PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 236 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
...-+.+++|.|...|++....+..+.+..++.++...++.+..---..+.=.|+..|.+.+.+++..|..++|.++..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 12235789999999999999999999999999999887765432222235556888899999999999999999988632
Q ss_pred cchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHH
Q 009700 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395 (528)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 395 (528)
. ...++..|+.-|+.. +...|.-...+|+-.+..+.. -.++|.|+.=...++..|+.-++.+++.
T Consensus 762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 2 223445566656554 333333333344433321111 2378888877788899999999999999
Q ss_pred hcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 396 ATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 396 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..........|+.. ..+.|-+.|...|+.-+..+...+..+.-.+.
T Consensus 827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 987554455556544 56777888888999888888888888776543
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.6e-07 Score=94.37 Aligned_cols=329 Identities=16% Similarity=0.177 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHH-----hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVI-----RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVP 161 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~-----~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 161 (528)
+-...++.+|+++++. +|....++ --|.++.+..+|....++.++..|+.++..++. +.++...+...|.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence 3567789999999987 44332222 247788888888876658999999999988887 888999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC---CCCChh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK---PPAPFD 238 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~ 238 (528)
.|+.+|.+ -|..|+.++..|..+++... ......+.|++..++.++..+.+...+..+...+..+..++ |...+.
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 99999976 47799999999999987665 45556788999999999988889999999999999998876 322222
Q ss_pred hhHHHH-----------HHHHHHhcC--CCHH------HHHHHHHHHHhhcc--------CC------hHH---------
Q 009700 239 QVRPAL-----------AALQHLIFS--SDEE------VLTDACWALSYLSD--------GT------NDK--------- 276 (528)
Q Consensus 239 ~~~~~l-----------~~L~~ll~~--~d~~------v~~~a~~~l~~l~~--------~~------~~~--------- 276 (528)
.+..+- ...++++.. ++++ .+...-..+..+.. ++ ++.
T Consensus 1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 222111 223344432 1222 11111112222210 00 000
Q ss_pred ---------HHHH------------HHhCcHHHHHHHhcCCChh--hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 277 ---------IQAV------------IEAGVCPRLVELLLHSSTT--VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 277 ---------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
...+ +-.++++.+.+++..+++. ....-..++..+....+...+.+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000 1113455566666554432 2222334445555666666667777899999999
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGC 413 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 413 (528)
.+... +..+-+.|..+|-.++. +.-..+.+.....+..++..|...- ...--|+.+|..+......+........|+
T Consensus 2055 Am~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred HHHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 99887 77777999999999966 5556666666666666776665543 344588899999888766677777788999
Q ss_pred hHHHHhhcCC
Q 009700 414 IKPLCDLLVC 423 (528)
Q Consensus 414 l~~L~~ll~~ 423 (528)
++.|+.+|++
T Consensus 2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhcc
Confidence 9999999976
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.99 E-value=2.7e-07 Score=89.65 Aligned_cols=355 Identities=13% Similarity=0.118 Sum_probs=220.0
Q ss_pred cHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSE-------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.+|.++++|..+ |...-..|..+|.-++..- -+.+.+ .++...-+-+.+++ -.-+..|+.+++.+..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~-pVl~FvEqni~~~~-w~nreaavmAfGSvm~ 395 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMR-PVLGFVEQNIRSES-WANREAAVMAFGSVMH 395 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHH-HHHHHHHHhccCch-hhhHHHHHHHhhhhhc
Confidence 578888888752 2345555555555443221 111111 13333344556666 5678889999999998
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--chhhHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATW 223 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~~~~a~~ 223 (528)
+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+ ..+-..|.++..+..+.. .+.+.+..+++|
T Consensus 396 gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 396 GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 755544443335688999999988888899999999999986644 345556666665544322 235677789999
Q ss_pred HhhhhcCCCCCCC---hhhhHHH----HHHHHHHhc--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH----
Q 009700 224 TLSNFCRGKPPAP---FDQVRPA----LAALQHLIF--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV---- 290 (528)
Q Consensus 224 ~L~~l~~~~~~~~---~~~~~~~----l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~---- 290 (528)
...||..+-+... ...+... +..|++... .++...+..+..+|+.+....++....++. |+.....
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl~ 551 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKLD 551 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHH
Confidence 9999988763322 1222333 333333222 345667778888888776654433322221 1222211
Q ss_pred -------HHhcCC----ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 291 -------ELLLHS----STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 291 -------~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
+.+... -.+++.+-+..|..+........+.+ ...++..++.+|.+.....+-.....+|++++..-.
T Consensus 552 ~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 552 ECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence 112211 13456667777777765544433222 224677888899887334456678889999987544
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHH
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLE 437 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~ 437 (528)
+...... ..++|.|.+.|...+..+...|...++.++..-+.+...| ...++..|+++|.++ +.++.-.+|.++.
T Consensus 631 e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvFg 707 (858)
T COG5215 631 ERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVFG 707 (858)
T ss_pred HHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHHH
Confidence 5444333 4599999999999999999999999999987544444443 334678888988875 3345555566665
Q ss_pred HHHH
Q 009700 438 NILK 441 (528)
Q Consensus 438 ~i~~ 441 (528)
-|..
T Consensus 708 DIAl 711 (858)
T COG5215 708 DIAL 711 (858)
T ss_pred HHHH
Confidence 5554
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=2e-08 Score=96.52 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=157.8
Q ss_pred ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHh------cCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 159 AVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLS------HGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 159 ~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
....++.+|+. +++++.+.++..+..+..+.+...+.+.. .....++++++ ..+|..+...++..|..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 34455555543 67999999999999999888876666554 23578888877 67799999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-----cC--CChh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFS----SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----LH--SSTT 299 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~ 299 (528)
..+........+.++.++..+.+ ++.+++..++.++..+... +.....+.+.++++.+..++ .+ ....
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 87555554335666666666654 4566778899999999865 45777788889999999999 22 3467
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll 378 (528)
++..++.|++-++-. +.....+.+.++++.+..+++.....++.+-++.++.|+....+. ....++..|+++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 888999999988764 444556778889999999998876889999999999999975443 677777887777766655
Q ss_pred ccC--ChHHHHHH
Q 009700 379 QHA--EFEVKKEA 389 (528)
Q Consensus 379 ~~~--~~~v~~~a 389 (528)
... |+++....
T Consensus 293 ~rk~~Dedl~edl 305 (312)
T PF03224_consen 293 ERKWSDEDLTEDL 305 (312)
T ss_dssp SS--SSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 443 67766544
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7e-07 Score=90.35 Aligned_cols=297 Identities=15% Similarity=0.141 Sum_probs=171.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+.+.|++.+.-++-.|+.+|.++.+. +.+.. +.|-..++|++.+ +-++..|+.|...+....|+..+.+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 4455566777777888888888887654 23332 4677778888877 8888888888888877665554433
Q ss_pred --------Hh--cC----ChHHHHHhhCCC------CHHHHHHHHHHHHHhhCCC--hhH-----HHHHHhcCChHHHHH
Q 009700 155 --------IE--HG----AVPKFVQLLGSA------SDDVREQAVWALGNVAGDS--PSC-----RDLVLSHGALMPLLA 207 (528)
Q Consensus 155 --------~~--~g----~i~~L~~lL~~~------~~~i~~~a~~~L~nl~~~~--~~~-----~~~~~~~g~i~~Ll~ 207 (528)
.+ .| .+..+..++... ..++...-+..|-++.... |++ .+.++.-. +-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence 22 23 333444444331 1234555556666665322 111 11111100 122334
Q ss_pred hhccchhhHHHHHHHHHhhhhcCCCC-CCC--hhh-----------------hHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 208 QLNEHSKLSMLRNATWTLSNFCRGKP-PAP--FDQ-----------------VRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 208 ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~--~~~-----------------~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
+| ...+.+.-.....+|..+++... ... ... ..-++..|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 44 34455555555566666555431 111 011 1233455666666667777777777777
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHH
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEA 347 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a 347 (528)
.+...++...+. --..++++|++++..++..|+..+-.++..+.- .. ++.-|+.+|.+. ++.++...
T Consensus 339 r~V~~d~~avqr-----Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv--~~-----mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQR-----HRSTILECLKDPDVSIKRRALELSYALVNESNV--RV-----MVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHHH-----HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH--HH-----HHHHHHHHHHhc-cHHHHHHH
Confidence 766655533332 234688999999999999999988888764432 22 345788899888 99999998
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 348 CWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 348 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
+.-+..++.......+. .|..+..++...-.-|+..+...+..++..+
T Consensus 406 as~I~~laEkfaP~k~W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRW-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHhcCCcchh-----HHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 88888887632221111 2344555555544444444444444444433
No 62
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.96 E-value=2.1e-07 Score=90.33 Aligned_cols=364 Identities=14% Similarity=0.161 Sum_probs=215.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH------
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI------ 155 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~------ 155 (528)
+++|.+++..|..+|.++..-. ....+...+.-+.....+.+++++ .++..+|+.....++...-+.--...
T Consensus 231 q~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~p 308 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVP 308 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCc
Confidence 4678899999999999988764 455665666666677788889988 89999999888777763211111111
Q ss_pred ----------hcCChHHHHHhhCC---------------------------------------------CCHHHHHHHHH
Q 009700 156 ----------EHGAVPKFVQLLGS---------------------------------------------ASDDVREQAVW 180 (528)
Q Consensus 156 ----------~~g~i~~L~~lL~~---------------------------------------------~~~~i~~~a~~ 180 (528)
-..++|.|+++|.. ++..-|+.++.
T Consensus 309 ~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 309 AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHH
Confidence 12367888888853 12222344444
Q ss_pred HHHHhhCCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHH
Q 009700 181 ALGNVAGDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 181 ~L~nl~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~ 257 (528)
++|.+-.+.. .++..++ ...+|.+...+ .++..-++..+.|++..++.+-+... ...+.+.+.....-+ .+.+.
T Consensus 389 AfGSvm~gp~~~~lT~~V-~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl-~D~p~ 465 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIV-PQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGL-MDCPF 465 (858)
T ss_pred HhhhhhcCccHHHHHhhH-HhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhh-hccch
Confidence 4444432221 1222222 23455566666 56666788999999999987642111 011111222211111 24678
Q ss_pred HHHHHHHHHHhhccCChHHHHH---HHHh---CcHHHHHHHh--cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 258 VLTDACWALSYLSDGTNDKIQA---VIEA---GVCPRLVELL--LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~---~~~~---~~l~~L~~lL--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
+..+++|...+++++-...... ++.. .++..|++.- ...+...|..+..+||.+....++....++ .|+..
T Consensus 466 ~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~ 544 (858)
T COG5215 466 RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYD 544 (858)
T ss_pred HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHH
Confidence 8899999999998764433211 1111 1222232221 124566788888999998876655332221 23333
Q ss_pred HHHH-----------HhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC-hHHHHHHHHHHH
Q 009700 330 RLYQ-----------LLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE-FEVKKEASWAIS 394 (528)
Q Consensus 330 ~L~~-----------lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 394 (528)
...+ .|.... ..+++..-+..|..+.+..+..+...- ..++..++++|.+.+ .-+-..+..+++
T Consensus 545 ~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIs 623 (858)
T COG5215 545 YTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAIS 623 (858)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHH
Confidence 3322 222220 235666667777766654443333322 236778889998874 456677888898
Q ss_pred HhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 395 NATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 395 nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
++...-...+-+|+ ..++|.|...|+..|..+...+...+..+...-+.. -++|+..+
T Consensus 624 al~~sl~e~Fe~y~--~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d-------f~~y~d~~ 681 (858)
T COG5215 624 ALSTSLEERFEQYA--SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD-------FNIYADVL 681 (858)
T ss_pred HHHHHHHHHHHHHH--hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHH
Confidence 88874434444443 348999999999999999888888888888754432 45677666
No 63
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.1e-07 Score=98.14 Aligned_cols=270 Identities=17% Similarity=0.199 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..|+.|....-..-+..+.|+.+ +|..++.|-+ +--+..|+..|+.+..-.+-....-+.-|+.|+++++
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 45677777766666666666654 6777776654 3568889999999998778888888888999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch--hhHHHHHHHHHhhhhcCCCCCCChhhh-HHH
Q 009700 167 LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS--KLSMLRNATWTLSNFCRGKPPAPFDQV-RPA 243 (528)
Q Consensus 167 L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~ 243 (528)
|+++-.+++..-+.+...|..-++.++..+++.++-..+++.|..++ +++-+..++.+|+.++.+.+..+.... .++
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999999999999998777888888888888888888884423 457888999999999998754444333 566
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----Ccch
Q 009700 244 LAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDTQ 318 (528)
Q Consensus 244 l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~ 318 (528)
+...+..|.++ .+-++..+|-+|+.|-.+.++..=.-...+..+.|..+|.++-++||..|+.+||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 77777888774 577899999999999877664433334456889999999999999999999999999875 3333
Q ss_pred hHHH------------hccCCh---HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 319 TQCV------------IDNQGL---PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 319 ~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
...+ ++..+. ..++.+++.+ .+-++.+..-+++.+..+...+.....-
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 3222 222222 3567777888 9999999999999998876666554443
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-06 Score=85.17 Aligned_cols=341 Identities=16% Similarity=0.120 Sum_probs=228.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
++..|..-+..+. +.+|.....||..+..... .... ..+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~-~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSK-GLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhh-ccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5778888888888 8999999988887765211 1111 12467788888888888899999999998866543 45
Q ss_pred HHhcCChHHHHHhhccchhhHHHH-HHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLR-NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
+.+.+++..+-..+ .+......+ .+..+.-.++..-.......+...+|.++..+.+....++..+..+..-+...-+
T Consensus 170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 56677888888887 443333333 3444444444332233334456777777777777788888888777766544322
Q ss_pred -HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 275 -DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 275 -~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.... -+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.++ ++++|+.+..++..
T Consensus 249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLK 321 (569)
T ss_pred cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 1111 1455555555555888999999999999988887764 44457999999999999 99999999999999
Q ss_pred Hhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC--CCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 354 ITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS--GGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 354 l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~--~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
++. .+++ ++ .++|.|++.+.++...+. ++...|+.-.. .-+..-+.. +++.|.+-+...+..+.
T Consensus 322 ~~svidN~d-I~-----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 322 FGSVIDNPD-IQ-----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHhhccHH-HH-----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhh
Confidence 986 3444 32 268899999988764443 33333332211 111111121 24555566667777888
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
..+..++.|++..-++.+. .-+|...+ +..|+.......|+++..+...+....
T Consensus 390 r~t~~IidNm~~LveDp~~-----lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKD-----LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred hhHHHHHHHHHHhhcCHHH-----HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 8899999999987754332 33444444 577777777779999998888884443
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.2e-06 Score=85.71 Aligned_cols=352 Identities=17% Similarity=0.168 Sum_probs=207.7
Q ss_pred CChHHHHHhHHHHHHHHHHHhhh--HHHHhhh-hhcc---ccCC-CCchhhhhhHHHhhccHHHHHHHhcCCCHHHHHHH
Q 009700 20 VDADEARRRREDNLVEIRKNKRE--DSLLKKR-REGL---ILQS-QPVTEANASIEKKLESIPSMVQGVLSENSGLQLEA 92 (528)
Q Consensus 20 ~~~~~~r~~r~~~~~~lRk~~r~--~~~~~~R-~~~~---~~~~-~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a 92 (528)
.+..|-|+-=+.....||+.-|+ ....+|| ++.- .+-. .+.. ++.+ .-++++.|++...+.-+
T Consensus 21 kT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypah---------FGqi-eclKLias~~f~dKRiG 90 (866)
T KOG1062|consen 21 KTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAH---------FGQI-ECLKLIASDNFLDKRIG 90 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCcc---------chhh-HHHHHhcCCCchHHHHH
Confidence 44455555555667788988887 4444443 3210 0000 0110 1222 33456667665444444
Q ss_pred HHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCH
Q 009700 93 TTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASD 172 (528)
Q Consensus 93 ~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~ 172 (528)
--+..-++.. ....-.+ +...|.+=|++++ .-+.-.|+.+|+++++ ++....+ .|-+-++|++.++
T Consensus 91 YLaamLlLdE--~qdvllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~~ 156 (866)
T KOG1062|consen 91 YLAAMLLLDE--RQDLLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRDP 156 (866)
T ss_pred HHHHHHHhcc--chHHHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCCH
Confidence 3333333332 2222222 2455666677777 7888999999999987 5555543 4888889999999
Q ss_pred HHHHHHHHHHHHhhCCChhHHH--------HHHh--cCC----hHHHHHhhccchh-----hHHHHHHHHHhhhhcCCC-
Q 009700 173 DVREQAVWALGNVAGDSPSCRD--------LVLS--HGA----LMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGK- 232 (528)
Q Consensus 173 ~i~~~a~~~L~nl~~~~~~~~~--------~~~~--~g~----i~~Ll~ll~~~~~-----~~~~~~a~~~L~~l~~~~- 232 (528)
.+|..|+.|...+....|+.-+ .+.+ +|+ +..+..++..+++ .++.......|.++....
T Consensus 157 ~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y 236 (866)
T KOG1062|consen 157 YIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY 236 (866)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999877665433 3332 333 4444555533221 235667777888888776
Q ss_pred -CCCChhhh-HHHHH----HHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH--HHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 233 -PPAPFDQV-RPALA----ALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA--VIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 233 -~~~~~~~~-~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
|......+ .+.++ .++++|..+|.+......-.|..++.+.+..... .+-...+..++.+ .++..++..|
T Consensus 237 speydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~Lrvla 314 (866)
T KOG1062|consen 237 SPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLA 314 (866)
T ss_pred CCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHH
Confidence 22222222 33333 3556777888888888888888887754422111 1111122222222 1345566667
Q ss_pred HHHHhHhhcCCcchhHHHhc----------cC----ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 009700 305 LRTVGNIVTGDDTQTQCVID----------NQ----GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI 370 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~----------~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 370 (528)
+.+||.+..+.+...+++-- .. -=..+++.|+++ |..+|+.|+..+..|.- ...+.. +
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn--~~Nv~~-----m 386 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVN--ESNVRV-----M 386 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhc--cccHHH-----H
Confidence 77777666655544333210 11 123477888888 99999999988888863 333433 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH
Q 009700 371 IAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405 (528)
Q Consensus 371 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 405 (528)
+..|+..|.+.+.+.+...+.-+..++..-.|+..
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch
Confidence 55688888888999999999988888876555443
No 66
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=3.9e-07 Score=86.53 Aligned_cols=273 Identities=18% Similarity=0.152 Sum_probs=186.2
Q ss_pred hhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 009700 107 PIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGN 184 (528)
Q Consensus 107 ~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~n 184 (528)
-++.+...|.+..|+.++..++ ...++.+|.+.|-.+.. .++++.+...| +..++.+-+. ..++.....+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 3556667889999999999887 34579999999999987 78888888877 5555555444 668899999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC--CCChhhhHHHHHHHHHHhcCCCHHHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP--PAPFDQVRPALAALQHLIFSSDEEVLTDA 262 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a 262 (528)
+..++.+....++..|++..++-.. ...++.+.++|..+|.|++-+.. .........+-..|..+-.+.|+-.+.+|
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 9999988888899999999998888 66679999999999999987752 22223334555567777667788889999
Q ss_pred HHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchh
Q 009700 263 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 263 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 342 (528)
|.+++.++.... .-..+-.+|.+..+-.++.+.++.-. +....... .--....++.|+.+|.+. .-+
T Consensus 328 ClAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~a-QG~~~d~LqRLvPlLdS~-R~E 394 (832)
T KOG3678|consen 328 CLAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYA-QGRGPDDLQRLVPLLDSN-RLE 394 (832)
T ss_pred HHHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhh-ccCChHHHHHhhhhhhcc-hhh
Confidence 999999987653 33445555655555555555443211 11111111 011123577899999876 555
Q ss_pred HHHHHHHHHHHHhc-CC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 343 IKKEACWTISNITA-GS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 343 v~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
.+..+++-++.=++ .+ ....+.+.+-|.|..|-++.++++.--.+.|..+|.-+
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 55444444433322 11 11223344678999999999888755555555555544
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.3e-06 Score=86.72 Aligned_cols=341 Identities=18% Similarity=0.198 Sum_probs=221.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
..+.+++.....|-+.+...-..+.+.+... |... .+.++.++.=..+++ +.++..|++.++.+.- +....
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e 120 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE 120 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence 4688888888888777777666677666552 2221 345777777777777 8999999888777655 22222
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +...+...+.+.++.+|..++.+..++-..++ +.+.+.|.+..|-.++ .+.++.+..+|+.+|..+....
T Consensus 121 y-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 Y-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred H-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence 2 45788999999999999999999999876654 4677889999999999 6889999999999999999876
Q ss_pred CC-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 PP-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 ~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+. .........+..++..+..-++--+...+.++.+-...++...+ .++.++...|.+.+..+...+...+...
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 53 33333455555555555444444445555555544433332222 2677788888888888888888887777
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ-------------------------AVI 366 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l~ 366 (528)
..........+. ..+-+.++.++++. . .++..|+.-+.-+....+.... .+.
T Consensus 267 ~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 267 VKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 754444222222 23445555555554 3 4444433333333222222100 001
Q ss_pred H-cC---cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 367 E-AN---IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 367 ~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
. .+ +++-|...-..-|.+...++.+|+++++..... .++++..|+++++.+-..++..++..+..++++
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 0 11 223333333344788889999999999884321 267899999999977777777778888888888
Q ss_pred hhhc
Q 009700 443 GEAD 446 (528)
Q Consensus 443 ~~~~ 446 (528)
.++.
T Consensus 417 yP~~ 420 (734)
T KOG1061|consen 417 YPNK 420 (734)
T ss_pred CCCc
Confidence 7654
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.77 E-value=5e-06 Score=83.42 Aligned_cols=334 Identities=12% Similarity=0.087 Sum_probs=207.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+...+..|++.. +.++.+|+..++.++.--. ..-+.+...| -.|...|...++++.-..+.++..|+....-.+.
T Consensus 801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 344456677777 8999999999888876211 1112233334 3466788888999988888877777632210000
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.--..+++|.|...| ++....++.++...+..+|...|.... .....+-=-|+.+|.+.+.+++..+..++++++..-
T Consensus 878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 111235788899999 888999999999999999988754221 111233334667788889999999999999998653
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.. .+++..|+.-|+..+...+....-+++-.+..+.. ..++|.|+.=...+ ...|+.-.+.+++-
T Consensus 957 GP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 957 GP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred CH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence 21 12455566666555444444433344433332221 12455555555555 77788888888877
Q ss_pred HhcCCHH-HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-------CCC
Q 009700 354 ITAGSRS-QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-------CPD 425 (528)
Q Consensus 354 l~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-------~~~ 425 (528)
+...-.+ ..+++ ..+.|.|-+.|.+.|.--|..|+.++.+++.+.. -.|..+.++.+|+ ...
T Consensus 1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence 7642111 22222 2378899999999999999999999999998642 2234444444443 356
Q ss_pred hHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 426 PRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 426 ~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
|.++....+++..+-..-... .+. .-+.+=.-|+...|++..-.+.+.++-...
T Consensus 1092 Phviqa~~e~~eg~r~~Lg~~---------~~~---------~Y~~QGLFHParkVR~~yw~vyn~my~~~~ 1145 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVALGPQ---------AML---------KYCLQGLFHPARKVRKRYWTVYNSMYHGSQ 1145 (1172)
T ss_pred hHHHHHHHHHHHHHHHHhchH---------HHH---------HHHHHhccCcHHHHHHHHHHHHHhHhhccc
Confidence 677766666666555432110 111 122222467778888877777776665443
No 69
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.76 E-value=3.1e-06 Score=87.11 Aligned_cols=353 Identities=13% Similarity=0.119 Sum_probs=217.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.+++.+.+.|.+.|++|+..|.+-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6788899999999999998887666543 222222223567899999999988 999999999999999743333211
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh----ccch-hhHHHHHHHHHhhhhcC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL----NEHS-KLSMLRNATWTLSNFCR 230 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll----~~~~-~~~~~~~a~~~L~~l~~ 230 (528)
..+..|+.-+-++....|..+.-.|-.....-+..........+.+.++..+ .... ...++..++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1344455444344444555444444433333222222222233334444333 2222 23355555555554433
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVG 309 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~ 309 (528)
.....-......++..++.-+.++-..|+..++.+|+.++...+.. ... ++++.+.+-|.. .+......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3222222245667777888888888999999999999998754421 111 356667766655 44555566677788
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc------
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH------ 380 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 380 (528)
.++.........- -..+++.+.+.. ... +.++|+.+..++..+...+|..+-..+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 8876544432211 125677788877 555 8899999999999988777766644432 244444444421
Q ss_pred --------------------------C--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHH
Q 009700 381 --------------------------A--EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVC 432 (528)
Q Consensus 381 --------------------------~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~ 432 (528)
. .+.||++|+.++..++.. ..+....+. +.+-+.++.-++.....+...+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHH
Confidence 0 256999999999988874 234444333 3455677777777777777777
Q ss_pred HHHHHHHHHhh
Q 009700 433 LEGLENILKIG 443 (528)
Q Consensus 433 l~~l~~i~~~~ 443 (528)
..++..++..-
T Consensus 394 f~~yi~ll~qt 404 (1233)
T KOG1824|consen 394 FHAYIALLKQT 404 (1233)
T ss_pred HHHHHHHHHcC
Confidence 77777777643
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.1e-06 Score=85.35 Aligned_cols=320 Identities=17% Similarity=0.082 Sum_probs=199.1
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
.-.+++|..+.++.+++ ..+++.|+..+.|++..-... .......+...+.++....+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34678999999999988 899999999999998721111 1111123445566665555554443 44444444322111
Q ss_pred HHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 192 CRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
-++. .--++.++.+|. ...++..+...+.-|..|-..++..-......+++.|..+|..+.++|+.-+=.+++.
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1110 112444444442 4456777777776666665443333334457889999999999999988665555554
Q ss_pred hcc---CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHH
Q 009700 269 LSD---GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIK 344 (528)
Q Consensus 269 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~ 344 (528)
+.. .++... --...++.++..+.++++.++..|+.-+-.++.-.+... ...-+|++..+++.+.+. .. .++
T Consensus 235 fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~ 309 (675)
T KOG0212|consen 235 FLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK 309 (675)
T ss_pred HHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence 432 122111 112478888999999999999999888888776555433 344568888888888877 44 344
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHH-cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 009700 345 KEACWTISNITA--GSRSQIQAVIE-ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421 (528)
Q Consensus 345 ~~a~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll 421 (528)
..+...-+.+.. +.+...+. ++ -.++..|...+.+...+.|..+..-+..+-...+.+... ....+...|..-|
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL 386 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence 444333222222 11111111 33 236788888888998999999987777776644322221 1345777888888
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhh
Q 009700 422 VCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 422 ~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.+.+.+++..++..+.+++...+.
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCccc
Confidence 888999999999999999876544
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.8e-06 Score=87.60 Aligned_cols=342 Identities=18% Similarity=0.155 Sum_probs=215.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++..+++...+.++.++..|++.+..+- . ..-... +...|...+++.+ +-++..++.++.++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~-v--~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR-V--DKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe-e--hHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 45666666677788888877766554221 1 111222 3677888888888 999999999999987744 3
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+.+...|.++.|..++.++++.+...|+.+|..|....+..-...+....+..++..+ +.-.-..-+.+|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence 4567789999999999999999999999999999866653111111111233333333 222233334455555555
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.|... .-...++..+...|.+.+..+...+...+.++...-......+. ..+-+.++.++.... .+..-|++-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 44433 33456667777777888888777777777777655443222222 346677777777766 6666666666655
Q ss_pred hcCCcchhHHH--------------------------hccCChHHHHHHhccc--CchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 312 VTGDDTQTQCV--------------------------IDNQGLPRLYQLLTQN--YKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 312 ~~~~~~~~~~~--------------------------~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
....+.....- -+.++-+.+-++.... .+...-+.+.+++++++..-++.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--
Confidence 54433211000 0112222222222221 16778889999999997643322
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~ 442 (528)
++++..|++++..+..-+..+++..+..+....+... + .++..++..+++ .+|+.+....|.+......
T Consensus 385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-E-----SVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-h-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 6789999999998877788889999999887653221 2 245566666665 6788887777777776655
Q ss_pred hh
Q 009700 443 GE 444 (528)
Q Consensus 443 ~~ 444 (528)
.+
T Consensus 455 i~ 456 (734)
T KOG1061|consen 455 IE 456 (734)
T ss_pred cC
Confidence 44
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.71 E-value=7.9e-06 Score=80.41 Aligned_cols=338 Identities=14% Similarity=0.114 Sum_probs=210.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASG--TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
++...+.+|.+.. +.++..|+...+.++.- .....+.+...| ..|...|...++++.-..+.+++.|..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4556677888887 89999999888777651 111233344444 345667777889998888888887764321 11
Q ss_pred H-HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh-hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 194 D-LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD-QVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 194 ~-~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
. .--..|++|.|...| .+....+..+....+..+|...|...-. ....+-=-|+.+|.+.+.+++..|..++++++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 112356889999999 7888899999999999999887543221 112333346778888999999999999999986
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
.-... +++..|+.-|+..+...+....-+++-.+..+.. ..++|.|+.=...+ +..|+.-.+.++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 53211 2555666666665555454444444444432221 13455555544555 667777777777
Q ss_pred HHHhcCC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 352 SNITAGS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 352 ~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
+-+.... ....+++ ..+.|.|-+.|.+.|+--|..|...+.+++.++.-- ....+++ ++..|..-+-.+.|.++
T Consensus 825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 7665421 1222222 237788889999999999999999999998875311 1111111 22233333334677777
Q ss_pred HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 430 TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
....+++..+...-.. .++. .-+.+=.-|++..|++..-...+..|-.
T Consensus 901 ~~~~Eg~e~~~~~lg~---------g~~m---------~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 901 QSFDEGMESFATVLGS---------GAMM---------KYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHHhcc---------HHHH---------HHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 7777777766654321 1122 2233345788888888776666665543
No 73
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=0.00012 Score=67.09 Aligned_cols=342 Identities=14% Similarity=0.160 Sum_probs=228.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCC---chhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERC---PPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
.+.|-..|..++..++.-++..+..++...+. ..+..++..+++|.++.++...+ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 45566677778888888999888888776421 12556678999999999999888 8999999999999998 7777
Q ss_pred HHHHHhcCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFV--QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~--~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
...+.++..+..+- .+-..-+.-.|..+...+..+.+-+|.....+...|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888777665443 2323345667888888999999999988888899999998888885557888889999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChH---HHHHHHHh--CcHHHHHHHhcCCChhhH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLLHSSTTVL 301 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~l~~L~~lL~~~~~~v~ 301 (528)
........+....++++.+...+.-. ++--.-.++...+.+.....- .-+.+++. -.++...+++...++..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 87765556666688888888888643 443333344444444322110 00112221 134555666777889999
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCC--hHH-HHHHhcccCchhHHHHHHHHHHHHhcC---CHHHH---------HH-H
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQG--LPR-LYQLLTQNYKKSIKKEACWTISNITAG---SRSQI---------QA-V 365 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~--l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~-l 365 (528)
..|+.++|.+.+.... .+.+...|- ... +......+ ...-+..+..+|.+++.. .++++ .. +
T Consensus 322 eaAiDalGilGSnteG-adlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 9999999998875543 333444332 222 23333333 344566777888888752 22221 11 1
Q ss_pred HH-------cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 009700 366 IE-------ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420 (528)
Q Consensus 366 ~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 420 (528)
++ ..-...+..+++.+.++++..+..++..++.. +-.+...+...+++....+.
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence 11 13455667778888999999999999988873 22223333355666555443
No 74
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=1.7e-06 Score=82.33 Aligned_cols=266 Identities=14% Similarity=0.110 Sum_probs=177.0
Q ss_pred ccHHHHHHHhcCCCHH--HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 72 ESIPSMVQGVLSENSG--LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
+.+..|++++.+++.+ ++.+|.+.|..++.. .+.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 4688999999988765 599999999999875 4666777666 555555555555589999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
....++..|++..++-.....++.+..+|+.+|+|++-.. ...+..+++..+-+-|..+- .+.|+-++.++|.++..+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999998888889999999999999998543 44566666666555555554 666888899999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
+..+.......-++.+..+-.++.+-|+.-... --...+.+. ..+-+++|+.+|.+...+.+.-+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 987643333333444444444555444432111 000111111 113578899999865544443333222
Q ss_pred hHhhc--CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 309 GNIVT--GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 309 ~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
..=+. .-....+.+.+-|.++.|..+.+++ +..--+.|-.+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 22221 1122344556678899999988876 544444444444443
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.1e-05 Score=76.93 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=179.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
+-+-++.+|+++. +-++..|+.++..+...-|+..+ ..+|.|..-|..+++.++..|+..++.+|..+|...
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4456677888887 88999999999888874444332 367999999999999999999999999998887531
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHH--hhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD-EEVLTDACWALS--YLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~ 272 (528)
+. .-|.+..+|-.+.+.-+.-..+..+.+|+.-.| .....+++.|..++++.. ..+...+..++. +++.+
T Consensus 217 -L~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 -LQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -cc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 11 456677777666666677777777777775543 234577888888887664 455566665553 33333
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
.++... .+.. +++.|-.++.+.++.++.-++-+++.++...+...+.. -+.++..|.+. +..+|-.|+..+.
T Consensus 290 ~~d~~a-siqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 222211 1121 67788888999999999999999999998777655433 34788999998 9999999999998
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCC
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~ 401 (528)
-+.. .+.+.. ++..|+..+... ....|.+.+.-+..++...+
T Consensus 362 gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn 404 (877)
T KOG1059|consen 362 GMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN 404 (877)
T ss_pred HHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence 8864 333433 344555544433 34777777777777766543
No 76
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2e-06 Score=89.24 Aligned_cols=245 Identities=17% Similarity=0.206 Sum_probs=189.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+|.+++-|-| .--++.|+..|.+++... ...+.....-|++|..+++|+++. .+++.--+.+.+.|..-++.+...
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHH
Confidence 4444544443 234677888888888764 667777788999999999999998 899999999999999988888888
Q ss_pred HHhcCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 154 VIEHGAVPKFVQLLGS-A--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~-~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+++.++-.++++.|.. + +++-|..|+.+|+.|+.+.+-.++.+++.+.+...+..|..++.+-++.-+|-+|..|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 9988888888888876 2 368999999999999988888888899999999888888554567788889999999988
Q ss_pred CCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC----ChHHHHHH------------HHhCcH---HHHH
Q 009700 231 GKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRLV 290 (528)
Q Consensus 231 ~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~L~ 290 (528)
+.+.....- ...+...|..+|..+-++|+..|..+|+.+..+ .++....+ ++.-+. -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 875555433 367788899999999999999999999988765 22222221 121111 2566
Q ss_pred HHhcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 291 ELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 291 ~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
.+++...+-++....-+|+.++.+...+...+
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 77788888888888888888887776655433
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=4.7e-05 Score=77.26 Aligned_cols=300 Identities=19% Similarity=0.173 Sum_probs=182.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.|..+-+.|+.+++.+|--|++.+..+ +-+.+.-+ ++-.+-++..+.. +-++..|+.++..+-+-+++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI----RVPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 467777788888888887776666533 12222111 1233345555666 89999999999999987887776
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+. ..+-.+|.+.++-+.-.|+.++-.+|-+.-+ .+ ++-...+.++| .+-++--+..+..+|...|+..
T Consensus 180 qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 543 5566788888899999999999998855322 22 23456677777 4444444555555665555554
Q ss_pred -CCCC----------------------------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh
Q 009700 233 -PPAP----------------------------FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283 (528)
Q Consensus 233 -~~~~----------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 283 (528)
+.+. ..-..-++...-.+|.+.++.+...++.+++.++.... ..
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~----- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT----- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----
Confidence 2220 01113345556678889999999999999999986432 12
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHH-------------------------hccC----ChHHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV-------------------------IDNQ----GLPRLYQL 334 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~-------------------------~~~~----~l~~L~~l 334 (528)
.++..|+.+|.++. .++.-.+..+..++...+.....- .+.+ +++-+...
T Consensus 322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y 400 (968)
T KOG1060|consen 322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY 400 (968)
T ss_pred HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 35677888877643 356666666666654333211110 0111 12223333
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
+++. +..+...+..+|+.++...... ...++..|+.++++.+..|..++...|..+....+.++.+
T Consensus 401 I~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ 466 (968)
T KOG1060|consen 401 IKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE 466 (968)
T ss_pred HhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH
Confidence 3444 4456666666677665432221 2235666777777777777777777777777765444433
No 78
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=5.6e-07 Score=86.90 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=192.1
Q ss_pred HHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHH
Q 009700 179 VWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 179 ~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~ 257 (528)
+.+|-.++..-...|.-+.+..+.++|++.| +.++.-+.-.++..++|+.-..+.. ......+++..|++++.+.|..
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 3344445455556777788888999999999 6666666666777777777655333 3344478999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc---hhHHHhcc----CChH
Q 009700 258 VLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT---QTQCVIDN----QGLP 329 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~~l~ 329 (528)
++....|.+..+..+.++..+ .++..-.+..++.+..++.+.++..++.++.|+...+.. ..+..+.. -+..
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999876554322 234445679999999999999999999999999874322 22222221 2456
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccC-----------ChHHHHHHHHHHHHhc
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHA-----------EFEVKKEASWAISNAT 397 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl~ 397 (528)
.+++.+... +|-...+.|+.|.++++.+....+.+. ...++..+..+|... ...+-.-......++.
T Consensus 569 ~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 569 RLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 677777777 777777889999999886555554444 344555554444321 1111111122222222
Q ss_pred CCCCHHHHHHHHHCCCh--HHHHhhcC---CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 398 SGGTREQIQFLVSQGCI--KPLCDLLV---CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l--~~L~~ll~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
.+.+ .. +.+.. +.+-.+=+ .++.++.....|.+.++.......... + ....-+..+.+.|.-+-+..
T Consensus 648 e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-r-atveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 648 ENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-R-ATVERIQILCANGIREWLVK 719 (743)
T ss_pred cccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc-h-hhHHHHHHHHHccHHHHHHH
Confidence 2111 00 11111 22222211 123345555666666644432221100 0 12235788889999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHh
Q 009700 473 LQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~ 492 (528)
+|.++++.|++++..++..+
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 99999999999999988753
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3e-05 Score=77.11 Aligned_cols=347 Identities=17% Similarity=0.158 Sum_probs=220.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+++.+....+.+|.....++..+........... +.+.+.++++... ..-+..+++.+..+..+. ....
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~~ 169 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIES 169 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHhh
Confidence 5666777777788888888777776655432223222 4777888888777 788888999998888754 3345
Q ss_pred HHhcCChHHHHHhhCCCCHH-HHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSASDD-VREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~-i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+.+.+++..+...+.+.... -++.+..+.-..+.. ++..-..+.. .++.++... .+..+.++..+..+...+.+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHh
Confidence 56678888888888874433 333233333222211 1111111121 345555555 556778888887777666544
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
-+. ..+...+|.++.-+....+.....++..++.++...+..... .-..++|.+.+.|.+..+.++..+..++-.+
T Consensus 247 ~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 247 LSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 321 223445555555444446777888889999888877755544 3446999999999999999999999999988
Q ss_pred hcCCcc-hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 312 VTGDDT-QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
+..-+. .++ .+++.|++.+.++ ...+. ++...|+.-+- -+.+..---+=++|.|.+-+...+..+++.++
T Consensus 323 ~svidN~dI~-----~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttF--V~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 323 GSVIDNPDIQ-----KIIPTLLDALADP-SCYTP-ECLDSLGATTF--VAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHhhccHHHH-----HHHHHHHHHhcCc-ccchH-HHHHhhcceee--eeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 864332 121 3567788888776 42222 23333332110 00000000012567777778888889999999
Q ss_pred HHHHHhcCCC-CHH-HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 391 WAISNATSGG-TRE-QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 391 ~aL~nl~~~~-~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.++.|++.-- ++. ...++-+ +++.|-..+....|+++..+..+|..+.+.....
T Consensus 394 ~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999998744 333 3344444 6777777777789999999999998888755443
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.57 E-value=9.4e-05 Score=75.97 Aligned_cols=380 Identities=14% Similarity=0.065 Sum_probs=225.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch--hHHHHhcCcHHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--IEEVIRAGVVPRFVEFLDRHD------LPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l~ 144 (528)
.+.+.+.+|++.+.+.++.|+..+.+++....... .+.+.+.=+.+.|-++|.+.. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57888999999888889999999999998642111 334667666788888888732 2467888899999998
Q ss_pred cCChhhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHH
Q 009700 145 SGTSEHTRVVIEHGAVPKFVQLLGSASD-DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223 (528)
Q Consensus 145 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~ 223 (528)
. .++....---.+-||.|+..+...+. .+...|+.+|..++ ..+.-++.+.+.|.++.|...+.+ .+.....++.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 8 44443211112579999999988666 99999999999999 555578888999999999999844 4555677777
Q ss_pred HhhhhcCCCCCC----ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHH-HHHHHHh----CcHHHHHHHhc
Q 009700 224 TLSNFCRGKPPA----PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK-IQAVIEA----GVCPRLVELLL 294 (528)
Q Consensus 224 ~L~~l~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~----~~l~~L~~lL~ 294 (528)
++.+++...... .......+++.+...+........-..|..|..+....+.. ....... .+...+..+|+
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 777776654211 12223456667777777666667777888888876654211 0111111 24445556665
Q ss_pred C-CChhhHHHHHHHHhHhhcCCcchhHHHhcc-----CChHHHHHH---------------hcccCch----------hH
Q 009700 295 H-SSTTVLVPALRTVGNIVTGDDTQTQCVIDN-----QGLPRLYQL---------------LTQNYKK----------SI 343 (528)
Q Consensus 295 ~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~l---------------L~~~~~~----------~v 343 (528)
+ ..+.-|.+++...+.+.......- .+.+. .++-.++++ ...+... .+
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G~~w-l~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i 320 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLGPEW-LFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI 320 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhChHh-hcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence 5 456677778777777764321100 01111 122222221 1111000 11
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHH--cCcHHHHHHHHccC------ChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009700 344 KKEACWTISNITA-----GSRSQIQAVIE--ANIIAPLVYLLQHA------EFEVKKEASWAISNATSGGTREQIQFLVS 410 (528)
Q Consensus 344 ~~~a~~~L~nl~~-----~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 410 (528)
-....+.+.+-.. -.++....+.. .+.+...+++|.+. ++..-..+..+|+....-.+....+.+
T Consensus 321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-- 398 (543)
T PF05536_consen 321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-- 398 (543)
T ss_pred HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence 1122222222111 13344444432 34555555666432 333556678888877765444434443
Q ss_pred CCChHHHHhhcCCCCh----------HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHH
Q 009700 411 QGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIE 471 (528)
Q Consensus 411 ~~~l~~L~~ll~~~~~----------~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 471 (528)
.++++.|+.+.+.... +.+.-.+=+|..+..... ....+..+||...+-
T Consensus 399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~------------gr~~l~~~~g~~~l~ 457 (543)
T PF05536_consen 399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE------------GRKILLSNGGWKLLC 457 (543)
T ss_pred HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH------------HHHHHHhCCcHHHHH
Confidence 3688888888865322 345555556665554221 355555677765554
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.57 E-value=5.1e-05 Score=78.50 Aligned_cols=366 Identities=15% Similarity=0.160 Sum_probs=212.3
Q ss_pred HHHHHHhhcC-CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 117 VPRFVEFLDR-HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 117 i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.|.|.+.+.. .+...++.+++..++.+.+.-....-. ...+++..++.-|.++...+|..++.+|+.++...+. +.
T Consensus 133 t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~l 209 (1233)
T KOG1824|consen 133 TPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DL 209 (1233)
T ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HH
Confidence 3444444432 222347777777777665521111111 1234555666667778889999999999999976553 22
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHh---cCCCHHHHHHHHHHHHhhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLI---FSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~~l~~~ 272 (528)
. .+.+..+++-|.+.......+....+|..+|+.....--.....++|.+.... +.+|+++++.++.++..+...
T Consensus 210 y--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 210 Y--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred H--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 2 23677788888666777778888888998888753333344567888888888 677899999999999887766
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCC----------------------------------ChhhHHHHHHHHhHhhcCCcch
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHS----------------------------------STTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~----------------------------------~~~v~~~al~~L~~l~~~~~~~ 318 (528)
.+..+-..... ++..+++.+.++ +|.+|+.|+.|+..+.....+.
T Consensus 288 cp~ei~p~~pe-i~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~ 366 (1233)
T KOG1824|consen 288 CPKEILPHVPE-IINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM 366 (1233)
T ss_pred ChhhhcccchH-HHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH
Confidence 65444433332 444445444321 2578999999998887543322
Q ss_pred hHHH------------------hccCChHHHHHHhcccC-----------------------------------------
Q 009700 319 TQCV------------------IDNQGLPRLYQLLTQNY----------------------------------------- 339 (528)
Q Consensus 319 ~~~~------------------~~~~~l~~L~~lL~~~~----------------------------------------- 339 (528)
...+ +...++..++.+|.+..
T Consensus 367 L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ 446 (1233)
T KOG1824|consen 367 LPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE 446 (1233)
T ss_pred HHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh
Confidence 1111 11223444444443210
Q ss_pred -chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 009700 340 -KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416 (528)
Q Consensus 340 -~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~ 416 (528)
+.+.+..+...|..+....|.....-+ ..++|.++..+.+. ....+..++..+.+....++++...-+. ..+.++
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~~-~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-~~Ls~~ 524 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQHI-PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-SALSPP 524 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhcc-cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-hhhhhH
Confidence 011111111122222111111110000 12455555555444 3577888888888887776665544322 235566
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcC
Q 009700 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 417 L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~ 494 (528)
+......+-+++...++-....+++.-.........+.++|...+- --.++.|. ...|.+|+++|...+..+..
T Consensus 525 v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~----~~tl~rL~a~d~DqeVkeraIscmgq~i~ 599 (1233)
T KOG1824|consen 525 VVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY----DCTLQRLKATDSDQEVKERAISCMGQIIA 599 (1233)
T ss_pred HHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777554433211223455554442 23445554 67889999999887776544
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.56 E-value=2.3e-05 Score=77.20 Aligned_cols=241 Identities=17% Similarity=0.063 Sum_probs=165.0
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++.++..+. .+++.+...++..+. ... .+. .+..|+..|.+.+ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4566777774 455666655554443 111 111 2788889998877 7899999998886544
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+..+.|+.+|.+.++.++..++.+++..-. ...+.+...| ++.+..++..++.+|..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 2356788889988899999888877776321 1346777888 688899999999999988754
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
..++.|...+.+.++.|+..+++++..+.. +. .+..+..............+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 345667777888999999999999977643 21 233444433444433433333344333
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
+.+ ..++.|..+++++ .++..++++++.+-. + ..++.|+..+.... ++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCcH--HHHHHHH
Confidence 111 4567888888865 389999999997742 2 36788888776553 9999999
Q ss_pred HHHHhcC
Q 009700 392 AISNATS 398 (528)
Q Consensus 392 aL~nl~~ 398 (528)
++..|+-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999876
No 83
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.1e-06 Score=84.93 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=191.3
Q ss_pred HHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009700 110 EVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 110 ~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~ 189 (528)
.+.+..+...|+++|+.++ ..+..-+...++|..-..+.-+..+++.|++..|++++.+.+..++....|.+..+..++
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3345678899999999887 677888888999988877778888999999999999999989999999999999998665
Q ss_pred hhH-HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC--CChhhh------HHHHHHHHHHhcCCCHHHHH
Q 009700 190 PSC-RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP--APFDQV------RPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 190 ~~~-~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~ 260 (528)
.+. +-..+..-++..++.+. +++...++..++..|.|+..+... ...... .-....|+..+...++-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 432 33445555688899998 888999999999999999875422 111111 33566777888877777777
Q ss_pred HHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC-----------CChhhHHHHHHHHhHhhcCCcchhHHHhccCCh
Q 009700 261 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH-----------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGL 328 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~-----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 328 (528)
..|..|.+++..+++....+... .++..+..+|.. ....+..+......++....+.....+.-..-+
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 77889988887666554444433 344444443321 112333344444444444333222111100001
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 329 PRLYQLLTQNYKKSIKKEACWTISNITA---G------SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 329 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
+.. +--....+.++-.+..|.+.|+.- + +.+.++.+.+.|+-+.|.......++.||+.+-.||.++-
T Consensus 664 D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 664 DNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred ccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 100 000111134567778888888652 2 2366777888888888887777788899999999998863
No 84
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00016 Score=73.55 Aligned_cols=171 Identities=14% Similarity=0.193 Sum_probs=100.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..|..+|.|+....+..|+.-+..+...+.+ . +..+|..|+...+.+ .+++...---|...+...++-. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 4677778888777888888777666655322 2 234777788887777 7888877777777777444321 1
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
. -|..+-+-|.++++.+|..|+++|..|=. +..... ++-++-++. .++.+-++..|+.++-.|-.-.+.
T Consensus 108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 L---SINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChh
Confidence 1 35677778888888888888888777621 100000 011111222 455666777777777766554432
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.. ..++..+-.+|.+.++-|.-.|+.++-.+|
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 21 133444444555555555555555555444
No 85
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=3.8e-05 Score=80.40 Aligned_cols=379 Identities=15% Similarity=0.150 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++....+...++..|...+..+......+. . ....+.+.+++...+.+ ..++.........+...-. ..
T Consensus 278 ~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d-~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~~---~~ 350 (759)
T KOG0211|consen 278 LPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D-VVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAVG---PS 350 (759)
T ss_pred cHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHhc---cc
Confidence 4555555555555677777777666665542221 1 12334677777777666 5666555554444443100 01
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
......++....++.....+.+..++.-...++.. +..++..+....+++.+-.+. .+.+..++...+.....+..-.
T Consensus 351 ~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~ 429 (759)
T KOG0211|consen 351 ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPIL 429 (759)
T ss_pred cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccC
Confidence 11123456666667666666666665555555422 111222333344455555555 6667777776666666555432
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+ ....+...+|.+...++..++.|+.+..+.+..+-...+..-...+....++.+..+-....+.++...++.+..++
T Consensus 430 ~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 430 P--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred C--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 2 22334667888888899999999999998776654433322222333457888888888888999999999988888
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
.... ..+++...-+.+...+.+. ...+++.|+..+.-++. |....+ ...+|.++.+...++...|...+
T Consensus 508 ~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 508 LQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred Hhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHH
Confidence 6443 1344444555666667666 77899999988888875 322222 34678888887777888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.++..++...+.+. ....+++.+.++..+..+.++..++..|..+...-.... .+.-....+
T Consensus 579 ~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~--------------~~~~v~pll 640 (759)
T KOG0211|consen 579 FSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV--------------RDEEVLPLL 640 (759)
T ss_pred HHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH--------------HHHHHHHHH
Confidence 88887766443332 334578899999999999999999999998887653221 122234566
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 009700 471 ENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii 489 (528)
+.|-.+++.+++..|....
T Consensus 641 ~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 641 ETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHhccCcccchhHHHHHHH
Confidence 6666677777766555443
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.4e-05 Score=70.00 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=163.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE--HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+..++.++.+.+ |.++..|+..+..++.+ .-+.+.. .-.++.+.+++....+ .+.|+.+|.|++.+.. .|+
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 445789999988 99999999999999885 2222222 2467888888877555 7889999999987754 677
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh-------HHHHHHHHHHhcCC-C-HHHHHHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV-------RPALAALQHLIFSS-D-EEVLTDACWA 265 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~l~~L~~ll~~~-d-~~v~~~a~~~ 265 (528)
.++.. .+..++..+ .++...+....|..|+|+++.......... .+.+.....+...+ + ..-..+....
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77665 666677777 566667888899999999988632221111 22333333333332 1 1234556667
Q ss_pred HHhhccCChHHHHHHHHhCc--HHHHHHHhcCCChhhHH-HHHHHHhHhhcCCcchhHHHhcc--CChHHHH--------
Q 009700 266 LSYLSDGTNDKIQAVIEAGV--CPRLVELLLHSSTTVLV-PALRTVGNIVTGDDTQTQCVIDN--QGLPRLY-------- 332 (528)
Q Consensus 266 l~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~~~~~v~~-~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~-------- 332 (528)
+++++...... ..+..... .+.+..+ ...+..+|. ..+.+|-|+|-....+-. +++. ++++.|+
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 77777654422 23333321 2223333 334444544 467788887765443332 2221 2222222
Q ss_pred -------------HHhcc----cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHH
Q 009700 333 -------------QLLTQ----NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAIS 394 (528)
Q Consensus 333 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 394 (528)
++|.. .+++.+|+.-.-+|.-+|+ +...++.+...|+-|.+-.+-+.. +++++ .||.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 33321 1267899999999999987 566677787887777776655544 45555 4455555
Q ss_pred HhcC
Q 009700 395 NATS 398 (528)
Q Consensus 395 nl~~ 398 (528)
++..
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 5444
No 87
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.44 E-value=5.6e-05 Score=74.45 Aligned_cols=243 Identities=19% Similarity=0.039 Sum_probs=170.3
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.|+..|....++++...+++++..... +. ++..|+..|.+.++.++..++.+|+.+- .+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch-----
Confidence 578888888544437887777666643221 11 3788999999999999999999999762 11
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
...+.|+.++ ++.++.++..++.++..... ...+.+..+|++.++.++..++.+++.+...
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 2467788888 77888898888877766221 2356788889999999999999999998753
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..++.|...+.+.++.|+..|+.+++.+.. + ..+..+..+.... .......+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 256678888999999999999999976643 2 1233555544443 333444434444333
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEG 435 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~ 435 (528)
+.+ ..++.|..++.++. ++..++++++.+-.. . .++.|+..+.. +.+...+-++
T Consensus 237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~---------av~~L~~~l~d--~~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV---E---------AAPWCLEAMRE--PPWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c---------hHHHHHHHhcC--cHHHHHHHHH
Confidence 222 36777888887755 999999999976552 2 46667776654 3488888999
Q ss_pred HHHHHHh
Q 009700 436 LENILKI 442 (528)
Q Consensus 436 l~~i~~~ 442 (528)
+..|.-.
T Consensus 291 ~~~ItG~ 297 (410)
T TIGR02270 291 FSLITGM 297 (410)
T ss_pred HHHhhCC
Confidence 9888743
No 88
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00027 Score=74.03 Aligned_cols=303 Identities=13% Similarity=0.163 Sum_probs=198.6
Q ss_pred hhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 70 KLESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 70 ~~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
.++..+.+...+. ..++.++.-|+..+..+.+. .+....+...|.+..|+.+|.+. |..+..++.+|..+++ ++
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence 3455667777777 46788999999888876665 67888999999999999999765 6899999999999999 77
Q ss_pred hhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhHHHHHH-----------hcCChHHHHHhhccc-
Q 009700 149 EHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS---PSCRDLVL-----------SHGALMPLLAQLNEH- 212 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~---~~~~~~~~-----------~~g~i~~Ll~ll~~~- 212 (528)
+......+.|++..+..++.. .++..|.+++..|+.+..+. |..+-.++ ..| -+..+..+...
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-PEAAVHMFESTS 1922 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-HHHHHHHHhccC
Confidence 777778888988888887654 77999999999999997653 22111111 111 12333333111
Q ss_pred hhhH------HHHHHHHHhhhhc------------------------------------------CCC---CCCChhhhH
Q 009700 213 SKLS------MLRNATWTLSNFC------------------------------------------RGK---PPAPFDQVR 241 (528)
Q Consensus 213 ~~~~------~~~~a~~~L~~l~------------------------------------------~~~---~~~~~~~~~ 241 (528)
.+++ .+......+..+. .++ -........
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence 1111 1111111111111 110 001122334
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 242 PALAALQHLIFSSD--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 242 ~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
+++..+..++..++ .........++..|....+...+.+-..|.+|.++..+.+.+..+-..|++.|..++...- ..
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CC 2081 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HH
Confidence 55666666666443 3333334445555666666555666666999999999999888888999999999987443 33
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
+.+.....+..+++.+... +...--||.+|..+.. ...+.+...++.|++|.|+.+|...
T Consensus 2082 ~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 3455555566677777653 3444577888887765 4455566677899999999999765
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00019 Score=65.23 Aligned_cols=274 Identities=14% Similarity=0.137 Sum_probs=179.9
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
..++.++ .+.++.++..|+.-+..|+.. +...... ....++.+.+++...++ ...|..++.|++.... ....++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll 80 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL 80 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence 4567777 788899999999999998877 2222222 25567788888887766 6788999999997643 445555
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh------ccCChHHHHHHhcccCch-hHHHHHHHHHHHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI------DNQGLPRLYQLLTQNYKK-SIKKEACWTISNI 354 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 354 (528)
+. ++..++..+.++.+.+....+..++|++...+.....+. +.|++.....+..++.+. .--...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 55 888889999998888999999999999987665432221 256666666666655331 2224456677777
Q ss_pred hcCCHHHHHHHHHcCcHHH-HHHHHccCChHHHH-HHHHHHHHhcCCCCHHHHHHHHH--CCC-----------------
Q 009700 355 TAGSRSQIQAVIEANIIAP-LVYLLQHAEFEVKK-EASWAISNATSGGTREQIQFLVS--QGC----------------- 413 (528)
Q Consensus 355 ~~~~~~~~~~l~~~~~i~~-L~~ll~~~~~~v~~-~a~~aL~nl~~~~~~~~~~~l~~--~~~----------------- 413 (528)
+. .+..+..+.+...+|. -+..+.+.+..+|+ ..+.+|.|++... ..-..+.. ..+
T Consensus 160 s~-~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 160 SQ-FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hh-hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 55 5566666665443332 12223334555554 4466777766532 11111111 011
Q ss_pred ----hHHHHhhcC-----CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHH
Q 009700 414 ----IKPLCDLLV-----CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYE 483 (528)
Q Consensus 414 ----l~~L~~ll~-----~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~ 483 (528)
++.=.++|. .+|+.++...+++|..++.-.. ..+.++.-|+...+..+- .-++++++.
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 222224443 3678899999999887764322 367788999999999985 678999999
Q ss_pred HHHHHHHHhcCCCc
Q 009700 484 KAVKLLERYWVEEE 497 (528)
Q Consensus 484 ~a~~ii~~~~~~~~ 497 (528)
.+..++.-....+.
T Consensus 305 ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 305 ACEQVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHHHHhccc
Confidence 99999887776433
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00068 Score=68.32 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=181.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+..+-+=|.+.+ +.....|+.+++|+.+ -+.+..+. +-+-++|-++ .+-++..++-+|..+-...|+.
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 333444455556 7888999999999876 44554443 2233666553 3678999999999998777752
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-------------CCCHHHHHH
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-------------SSDEEVLTD 261 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~ 261 (528)
+-..+....++.+| ++.+-.+...+...+--|+...|......+..++..|..... -+.+-++..
T Consensus 183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 33345678889999 666677777777777778776654444444444444433332 134678888
Q ss_pred HHHHHHhhccCChH-HHHHHHHhCcHHHHHHHhcCC----C---hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 262 ACWALSYLSDGTND-KIQAVIEAGVCPRLVELLLHS----S---TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 262 a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
.+++|.+.-.-.+. ....+. .+++.++...+.. + .......+.-.-+++..-+..-+.+. ..+..|-+
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~ 336 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQ 336 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHH
Confidence 88888887443222 222211 2445555444421 1 11223334444445544443333332 35677888
Q ss_pred HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 334 LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
+|.+. ...+|.-|+..++.++.. ...+..+-.+ ...++..|+ ..|..+|+.|+..|..++...+.+.
T Consensus 337 fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~-------- 404 (938)
T KOG1077|consen 337 FLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ-------- 404 (938)
T ss_pred Hhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------
Confidence 99988 899999999999999864 2223333332 677788888 6799999999999999988654333
Q ss_pred ChHHHHhhcCCCChHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCL 433 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l 433 (528)
++.-|+++|.+.|+.+++...
T Consensus 405 IV~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHH
Confidence 355677777777877776544
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.42 E-value=3.5e-05 Score=75.03 Aligned_cols=314 Identities=16% Similarity=0.156 Sum_probs=194.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+.+..++-+++.+++..|.+.+|.++.. ....+.+.+.++--.++..|..++ +..-+.+|+..+..+..... ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 4444455566689999999999998876 567788888886666677776543 35568899999888877321 111
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+..|++..++.+.+++++..+..|+.+|+.++..+|. .+...|++..+++.+.+ +..++...++.++..+...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 12457889999999999999999999999999988885 67889999999999954 444588889999999987753
Q ss_pred CCChhhh----HHHHHHHHHHh---cCCCH--HHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHH
Q 009700 234 PAPFDQV----RPALAALQHLI---FSSDE--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVP 303 (528)
Q Consensus 234 ~~~~~~~----~~~l~~L~~ll---~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~ 303 (528)
....... ..++..+...- ..++. +....+..++..+...=+.....-... ..+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 3322221 22333333321 11222 345555556655544322121111111 36788999999999999999
Q ss_pred HHHHHhHhhcCCcc-hhH------HHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHH
Q 009700 304 ALRTVGNIVTGDDT-QTQ------CVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNITAGS-RSQIQAVIEANIIA 372 (528)
Q Consensus 304 al~~L~~l~~~~~~-~~~------~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~ 372 (528)
.+..+..+..-... ... .....|...--..+- ... ........ .--.++..+. .-....+++.|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence 99888888653221 111 111112110000110 000 00000000 0001111111 11233456899999
Q ss_pred HHHHHHccC-ChHHHHHHHHHHHHhcC
Q 009700 373 PLVYLLQHA-EFEVKKEASWAISNATS 398 (528)
Q Consensus 373 ~L~~ll~~~-~~~v~~~a~~aL~nl~~ 398 (528)
.|+++.... +..+...|...|+.+..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999887 88999999988887754
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.39 E-value=0.00023 Score=69.54 Aligned_cols=250 Identities=26% Similarity=0.312 Sum_probs=176.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+.+..++..|+..+..+-.. -.+|.|..++.+.+ +.++..|+.+|+.+-. +
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence 578889999999999999999886654322 24899999999998 8999999998888754 2
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchh-----------hHHHHH
Q 009700 153 VVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSK-----------LSMLRN 220 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~-----------~~~~~~ 220 (528)
..++.|+.+|. +++..+|..++++|+.+-... .+.+++..+.+... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 25788999888 589999999999999984221 36677777733221 134455
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 300 (528)
+...+..+-.. ..++.+..++...+..++..+..+++.+.... ..+.+.+...+.+.++.+
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 55555544332 45677888888888889999999998887654 235677888889999999
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH 380 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 380 (528)
+..++..++.+-.. ..+..+...+... +..++..+...+... .. ......+...+.+
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhhc
Confidence 99999888866542 2344667777776 665555554444411 00 1234455566667
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 009700 381 AEFEVKKEASWAISNATSG 399 (528)
Q Consensus 381 ~~~~v~~~a~~aL~nl~~~ 399 (528)
....++..+..++..+...
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 7778888888877776653
No 93
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4e-05 Score=70.00 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=187.5
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh----HHHHHHHHhCcHHHHHHHhcCC
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
+..+|-.|..... .........|.|..-|..+|..+..-+|..++.+..+.+ ..+..++..++++.++.++...
T Consensus 63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 4455555554431 122335667777777888899999999999999887655 3455567889999999999999
Q ss_pred ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH--HhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ--LLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
+.++...|...+..++...+. ...+++...++.+-. +-... +.-+|......|..+.+-++....+.-..|++..|
T Consensus 141 ddeVAkAAiesikrialfpaa-leaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAA-LEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHH-HHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 999999999999999986554 346777666665432 22333 66788888889999988889988888899999999
Q ss_pred HHHHcc-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 375 VYLLQH-AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 375 ~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
..-|.. .|.-|+.+++.....++. .....+++.+.|+++.+++.+.. .+|.-...++-+..+++....-.+..
T Consensus 219 eaElkGteDtLVianciElvteLae--teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvs-- 294 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAE--TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVS-- 294 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHH--HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcC--
Confidence 988876 678888899999888887 34556778889999999999875 44544444666666666433322211
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
....++.+. -.++..-.+.+..+++....|.+.+..+-+.-++
T Consensus 295 --eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 295 --EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG 337 (524)
T ss_pred --HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence 122333321 1234444555677788888888887766554443
No 94
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00029 Score=71.41 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhc
Q 009700 385 VKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDEC 464 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 464 (528)
.|..-..++..++..- ++.. ..+++.|++.+.+.++..-..++..+...++..++.+ ...++
T Consensus 375 yRqlLiktih~cav~F-p~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-- 436 (948)
T KOG1058|consen 375 YRQLLIKTIHACAVKF-PEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-- 436 (948)
T ss_pred HHHHHHHHHHHHhhcC-hHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH--
Confidence 4444555555544432 2222 2357788888888888777777777777777665432 22221
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCc
Q 009700 465 DGLDKIENLQSHDNNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 465 g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~ 497 (528)
..++.+-.-.+..++.-|.||+..|...+.
T Consensus 437 ---~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 437 ---KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ---HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 223334444566788889999999888765
No 95
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=9.1e-05 Score=77.59 Aligned_cols=384 Identities=11% Similarity=0.082 Sum_probs=253.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
..-+..+..++.++..++..+.+++... ......++++|.+.++..++. ..++..|...+.++...-.... ..
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~- 313 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DV- 313 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hh-
Confidence 3333444566788888888888776652 225667889999999998877 7899999999888877221111 11
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
.....+.+++..++++..++.........++..-.. .......+++...++ ++...+.+..+..-...++......
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcc
Confidence 124678888888888888888777776666532111 111112356666666 6666666666665555555543221
Q ss_pred --ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 236 --PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 236 --~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.......++|.+..+..+.+..++...+..+..+..-.+ ....+. ...+.+...+++..+.++....+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTIS-ELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCcc-ccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 222335567888888888889998888777777654322 111111 367778888888999999998888877665
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
.++..--.......++.+..+-... ..+++.+..+.+-.++.... ..+++...-+.+...+.+....+++.|+..+
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 5544333344556777777777776 78899999999988875322 2334433455555666677789999999988
Q ss_pred HHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHH
Q 009700 394 SNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL 473 (528)
Q Consensus 394 ~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L 473 (528)
..++.....++. ....++.+......++...+...+.++..+.....+.- +++.| ++.+..+
T Consensus 543 ~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei---------~~~~L-----lp~~~~l 604 (759)
T KOG0211|consen 543 PALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI---------TCEDL-----LPVFLDL 604 (759)
T ss_pred HHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH---------HHHHH-----hHHHHHh
Confidence 888763322221 12246666666666667778888888887777654321 33333 6888889
Q ss_pred hcCCCHHHHHHHHHHHHHhcCC
Q 009700 474 QSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 474 ~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
..++.++|+-.+.+.+..+-..
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhh
Confidence 9999999998888888776553
No 96
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.34 E-value=0.0015 Score=65.59 Aligned_cols=347 Identities=14% Similarity=0.134 Sum_probs=199.2
Q ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh-
Q 009700 75 PSMVQGVLSENS---GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH- 150 (528)
Q Consensus 75 ~~l~~~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~- 150 (528)
|.+...|.+.+. ......+.+|..+... .+-.+.++ ..++..|...++...+.+....++.++..+.....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 556666665443 4555667777777654 22233332 2455555555554434677777777877776632222
Q ss_pred ----HHHHHhcCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---------
Q 009700 151 ----TRVVIEHGAVPKFVQLLGS-----A--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--------- 210 (528)
Q Consensus 151 ----~~~i~~~g~i~~L~~lL~~-----~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--------- 210 (528)
.....+..++|.+..+.-. . ++.+.+.+...+..+...-+.-++.- .+..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence 2233334477877776532 1 25666666666666665443322221 1223333221
Q ss_pred --cc----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCC--hHHHHHHH
Q 009700 211 --EH----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGT--NDKIQAVI 281 (528)
Q Consensus 211 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~ 281 (528)
.. .......-...+++.+ ++..........+..++.+.. ..++..+..++.+++-++..- ++....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~-- 229 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSL---RKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE-- 229 (415)
T ss_pred ccccccccccccHHHHHHHHHHcC---CcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH--
Confidence 00 0111122222333333 233333344557777777654 446788888888888888662 222222
Q ss_pred HhCcHHHHHHHh-cCCChhhHHHHHHHHhHhh----cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 282 EAGVCPRLVELL-LHSSTTVLVPALRTVGNIV----TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 282 ~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
++..+...+ .......+..++.++..++ ...+.... .++..|+.+|.+ +.+...++..++-+..
T Consensus 230 ---~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 230 ---FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred ---HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 344444444 3334444445544444443 33332222 245578888865 4678888888888877
Q ss_pred CCHH--------HHHHHHHc----CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 009700 357 GSRS--------QIQAVIEA----NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424 (528)
Q Consensus 357 ~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 424 (528)
..+. .++.+.+. .++|.|++.....+...|.....||+++..+.+......= -..+++.+++.|+.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~-l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE-LPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHHHHHHhCCC
Confidence 5232 23333332 3678888888877777999999999999997664432221 124899999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhh
Q 009700 425 DPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 425 ~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++++..++++|..++...+.
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999987643
No 97
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=1.4e-05 Score=63.22 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=109.5
Q ss_pred hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 71 LESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 71 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
++-+..|+...+ ..+.+.+.+.+..|.+++-+ +.+...+.+..++..++..|..++ ..+..-++..|+|+|. ++.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~~ 90 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DKT 90 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-ChH
Confidence 455677777766 46778888888889988765 566778889999999999999998 8999999999999998 788
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
+.+.+++.+++|.++..++++...+...++.++..++...-..|+.+.. +++++++
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 8899999999999999999999999999999999998766667777665 4444444
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00016 Score=70.96 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=191.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch--------------------------------hHHHHh------
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP--------------------------------IEEVIR------ 113 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~--------------------------------~~~~~~------ 113 (528)
+.++.++..+...|..++.-|+..+.+++...+... ++.++.
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccccc
Confidence 457888888888888888877777665554321110 111111
Q ss_pred --cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH-HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh---C
Q 009700 114 --AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV-IEHGAVPKFVQLLGSASDDVREQAVWALGNVA---G 187 (528)
Q Consensus 114 --~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~---~ 187 (528)
.+++|.|-.-+...+ +..+.-.+.-|..+-+ .|.. +.+ .-..+++.|..+|.++++++|..+-.+++++- .
T Consensus 164 sL~~~ipLL~eriy~~n-~~tR~flv~Wl~~Lds-~P~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVIN-PMTRQFLVSWLYVLDS-VPDL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred CHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhc-CCcH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 122333333332333 5555544444444333 1211 111 11246778888999999999988888777764 2
Q ss_pred CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHH-HHHHHHHH-
Q 009700 188 DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEE-VLTDACWA- 265 (528)
Q Consensus 188 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~- 265 (528)
.+|.. +--...++.++..+ .++++.++..|+.-+..+..-.+..-....++++..++.++.+.++. +...+...
T Consensus 241 s~P~s---~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 241 SSPSS---MDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred cCccc---cCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 22321 11123567777777 77788888877776777776655555666788888899988877653 44433322
Q ss_pred --HHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchh
Q 009700 266 --LSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 266 --l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 342 (528)
+..++.......+ ++. .+++.+...+.++....+..++.-+.-+-...+.+. ......+.+.|+.-|++. +..
T Consensus 317 ~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDE 392 (675)
T ss_pred HHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhH
Confidence 2222221111101 232 367888889999999999999988888877777655 455668899999999998 999
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH
Q 009700 343 IKKEACWTISNITAGSRSQ-IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE 403 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~ 403 (528)
|...++..++++|...... .. .++..|+++......-+...+...+..++.--+++
T Consensus 393 vvl~~L~lla~i~~s~~~~~~~-----~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNSPNLR-----KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred HHHHHHHHHHHHhcCcccccHH-----HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 9999999999999743221 11 13344555555554445555555555554433333
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.29 E-value=0.0005 Score=67.02 Aligned_cols=313 Identities=16% Similarity=0.105 Sum_probs=191.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
.+.+..++-+++.++|..+.+++..+..+... -..+.+.++-..++..|..+. +..=+.+|+..+..+...+. ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 34444344444599999999999998877764 455566665555566664433 34446788888887776632 1223
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
.-.+++..++.+..+.++..+..++.+++.++-.++ +.++..|++..+...+.++...+....+.++-.+......
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t- 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT- 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch-
Confidence 346888899999999999999999999999998766 5677889999999999886666777788888877764433
Q ss_pred hHHHhccCChHHHHHHhccc------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc--CcHHHHHHHHccCChHHHHH
Q 009700 319 TQCVIDNQGLPRLYQLLTQN------YKK--SIKKEACWTISNITAGSRSQIQAVIEA--NIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~ 388 (528)
++.+...--++.++.-+.+. .+. ..-..+..++..+...-+..+ .+... ..+..|+..|..+.+++|..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 33344333344444444322 022 233444555555544222111 12212 46888999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHH------HCCChHHHHhhc---CCCC---hHHHHHHHHHHHHHHHhhhhchhccCCcchh
Q 009700 389 ASWAISNATSGGTREQIQFLV------SQGCIKPLCDLL---VCPD---PRIVTVCLEGLENILKIGEADKEAGSTTANV 456 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~ll---~~~~---~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~ 456 (528)
....+..+..-..+.+...+. ..|-..--.++. .... |.....-...+.+..- -
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a--------------L 325 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA--------------L 325 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH--------------H
Confidence 999999988755443322211 111110000000 0000 0000000011111110 1
Q ss_pred hHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 009700 457 YSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYW 493 (528)
Q Consensus 457 ~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~ 493 (528)
....+.++|.++.|..+..+. ++.+..+|.-++..++
T Consensus 326 ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 326 LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 244566899999999997655 9999999999998765
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.28 E-value=3.2e-05 Score=81.97 Aligned_cols=270 Identities=17% Similarity=0.124 Sum_probs=170.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC---Chh
Q 009700 74 IPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG---TSE 149 (528)
Q Consensus 74 l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~---~~~ 149 (528)
++.+...+++ ...+.+..|+..|..+...-.. +..-..++|.++.++.++. .+||..|+..|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 3344444443 3566788888888877654311 2222457999999999998 99999999999887762 122
Q ss_pred hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHH---HHhcC------------------------C
Q 009700 150 HTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDL---VLSHG------------------------A 201 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~---~~~~g------------------------~ 201 (528)
.-..+...-++|.|-.++.+ ....+|-.-+..|+.+|.....+... +...| .
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22234444578888888877 44556666666666665321111100 00010 1
Q ss_pred hHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 202 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 202 i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+..++.-|..++++-+++..+..|.-||.... ......-+++.|+.+|+..|+.++..-...|..++-.-.. .-+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~ 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSV 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeH
Confidence 22222222244455566666666666654321 0111134577788888888888887776666655432110 113
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+..++|.|.+.|.+.++.|...|+.++.-|+...--....+.+ +++....+|-++ +.-+|..+|.+|..++.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999998755433333443 677788899999 99999999999988865
No 101
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=4.2e-05 Score=76.19 Aligned_cols=222 Identities=16% Similarity=0.132 Sum_probs=148.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH---hhhhcCCC---CCCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT---LSNFCRGK---PPAP 236 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~---L~~l~~~~---~~~~ 236 (528)
|..+..+.+..++.+|+.+|..+.... ...+. .....++++ .+.+..++..|+.+ ++|.+-.+ ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 666666777778888888777776522 22222 244556677 77888888887544 45555221 1122
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC--
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG-- 314 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~-- 314 (528)
......++..+...+......|+..|..+|+.+-..+.+.++..++..++..+-..=... -+-..+..=|.+++|
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence 233456777888888888899999999999998887777777766655444222211100 011122222222222
Q ss_pred ---------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 315 ---------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 315 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
.+.....++..|....++.-|.+. -.+||+.|...++.++...|.... ..+..|++++.+....|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 223445678889999999999888 889999999999999987666443 25678999999998999
Q ss_pred HHHHHHHHHHhcCCC
Q 009700 386 KKEASWAISNATSGG 400 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~ 400 (528)
|..|+.+|..++...
T Consensus 427 RL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888753
No 102
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.27 E-value=1.8e-06 Score=54.88 Aligned_cols=41 Identities=44% Similarity=0.837 Sum_probs=38.3
Q ss_pred ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009700 147 TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAG 187 (528)
Q Consensus 147 ~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~ 187 (528)
++++++.+++.|++|.|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00029 Score=70.85 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=185.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..+.+.|.|.|+..+.-|+..+.++-+. +....+. . -+| ++|-+++ .+-++..|+-||..+-..+++.
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~-DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-D-DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-h-hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 45555667788888888888888877553 2332221 1 144 4554443 3568888999999998866543
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc------------cchhhHHHHH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN------------EHSKLSMLRN 220 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~------------~~~~~~~~~~ 220 (528)
+-..+-...++.+|.+.+-.+...+...+-.++...|+.....+.. .+..|..... .-+.+-++..
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 2223567889999998888888888888888886665432221110 1112222110 1134556677
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC----CC---HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS----SD---EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL 293 (528)
++.+|.++-.............++..++...+. .+ .......++-..+++-+-+..-+.+.. .+..|.++|
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHh
Confidence 777777772222222222333444444443331 11 122333333333443332322233333 678899999
Q ss_pred cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHH
Q 009700 294 LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAP 373 (528)
Q Consensus 294 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 373 (528)
.+.+..+|.-|+..+..+++..... +.+... .+.++..|+...|..+|+.|...|..+|.. +..+. ++.-
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~e 408 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAE 408 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHH
Confidence 9999999999999999999875443 234333 778999998555999999999999999853 22222 4667
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcC
Q 009700 374 LVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
|++.|.+.++.+|++...=+.-++.
T Consensus 409 lLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 8888888999999887766555554
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00012 Score=79.71 Aligned_cols=378 Identities=12% Similarity=0.120 Sum_probs=217.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS-GTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 152 (528)
...+...+.+.+|..|..++.-|-.+...-+..+........+...+.++|.+++ .-.|.-|.+-++-+-. ++...++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 3445556678889888776544433433322222222223445688899998887 7788888777665544 2333333
Q ss_pred HHHhcCChHHHHHhhCCC---------CHHHH-------------HHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc
Q 009700 153 VVIEHGAVPKFVQLLGSA---------SDDVR-------------EQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN 210 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~---------~~~i~-------------~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~ 210 (528)
.+ +..|+.-|-.+ +.++. -..-.=|+|+|.+-. +-..+-.++++-+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence 33 34444443221 11111 112223344443211 0112344455554
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
.+....-+.-|++-+..++.............++|.|.+.=.+++..|+.....+-..|..++...++..... ++.-|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHH
Confidence 4444555556666666666554333334456777888887778899998888777777777766666666654 888899
Q ss_pred HHhcCCChhhHHHHHHHHhHhhcCCcch--hHHHhccCChHHHHHHhcccCchhHHHHH---HHHHHHHhc-----CCHH
Q 009700 291 ELLLHSSTTVLVPALRTVGNIVTGDDTQ--TQCVIDNQGLPRLYQLLTQNYKKSIKKEA---CWTISNITA-----GSRS 360 (528)
Q Consensus 291 ~lL~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~-----~~~~ 360 (528)
.-+.+..|.+|+.+|-+|..+..+.+.. .+.+- .+...+...+.+- ...||+.| +.+|+-++. .+..
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 9999999999999999999999886532 11111 3444455555555 56677665 455555553 1222
Q ss_pred HHHHHHHcCcHHHHHH--HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHH-HHHHHH
Q 009700 361 QIQAVIEANIIAPLVY--LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTV-CLEGLE 437 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~-~l~~l~ 437 (528)
.-+.+++ .++|.|++ ++ +.-.++|..++.++..++...+.....++. .+++.|.+....-.+.+... ++.+ .
T Consensus 1123 ~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~ 1197 (1702)
T KOG0915|consen 1123 KGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-I 1197 (1702)
T ss_pred cHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-h
Confidence 2223332 36777764 33 566899999999999999865544333333 36888888887766665543 2222 2
Q ss_pred HHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHH
Q 009700 438 NILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482 (528)
Q Consensus 438 ~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~ 482 (528)
++-...- .+.-+......-.++.|..+.++-|..+-
T Consensus 1198 ~~e~eal---------Dt~R~s~aksspmmeTi~~ci~~iD~~vL 1233 (1702)
T KOG0915|consen 1198 NIETEAL---------DTLRASAAKSSPMMETINKCINYIDISVL 1233 (1702)
T ss_pred hhHHHHH---------HHHHHhhhcCCcHHHHHHHHHHhhhHHHH
Confidence 2211110 11123333344456677766666655544
No 105
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.26 E-value=1.8e-05 Score=62.58 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=99.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
+.+..||.-.....+.+.+.+...-|.|++. +|.+-..+.+..++..++..|..++..+.+.++..|+|+|.+.. +.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 3456666666555558999999999999998 78888899999999999999999999999999999999998876 678
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 889999999999999 7888888889999999998765
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=2.5e-06 Score=54.25 Aligned_cols=41 Identities=44% Similarity=0.653 Sum_probs=38.0
Q ss_pred CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 358 SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 358 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
++++++.+++.|++|.|+.+|.++++.++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999863
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.24 E-value=0.00028 Score=68.99 Aligned_cols=214 Identities=24% Similarity=0.319 Sum_probs=153.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.+.+++.+.+ ..++..|++.++.+.. .-+++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 44 ~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---- 105 (335)
T COG1413 44 AADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---- 105 (335)
T ss_pred hHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh----
Confidence 5888899999986 8999999999777654 236899999999999999999999999872 221
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCH------------HHHHHHH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDE------------EVLTDAC 263 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a~ 263 (528)
.+++++.++..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+.
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 5788999995578999999999999988754 235566666665442 2344444
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
.+++.+-.. ..++.+...+.+....++..|..+|+.+.... ..+.+.+...+.+. +..+
T Consensus 171 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~v 229 (335)
T COG1413 171 EALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEV 229 (335)
T ss_pred HHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHH
Confidence 444443321 24667777788877788888888888777654 23445677777777 8888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHH
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAIS 394 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 394 (528)
|..++.+++.+-.. ..++.++..+...+..++..+..++.
T Consensus 230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 230 RKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 88888888777321 23456666777777776666665554
No 108
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.18 E-value=0.00055 Score=68.87 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=167.2
Q ss_pred hhHHHHhcCcHHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC-----CH
Q 009700 107 PIEEVIRAGVVPRFVEFL---------DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA-----SD 172 (528)
Q Consensus 107 ~~~~~~~~g~i~~Lv~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~ 172 (528)
..+.++....+..|..+- ....++.+..+|++||+|+...++..+..+++.|..+.++..|+.. +.
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 444455444556665554 2223489999999999999999999999999999999999999875 68
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHhc-CChHHHHHhhcc----------------chhhHHHHHHHHHhhhhcCCCCCC
Q 009700 173 DVREQAVWALGNVAGDSPSCRDLVLSH-GALMPLLAQLNE----------------HSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 173 ~i~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~Ll~ll~~----------------~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
++.-...++|.-++...+..+..+.+. +++..++..|.. ..+......++.++.|+....+..
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 888888888888888777777666544 666666665520 124456777888889998776443
Q ss_pred Ch----hhhHHHHHHHHHHh---cC--CCHHHHHHHHHHHHhhccCChHHH-----------HHHHHhCcHHHHHHHhcC
Q 009700 236 PF----DQVRPALAALQHLI---FS--SDEEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 236 ~~----~~~~~~l~~L~~ll---~~--~d~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~l~~L~~lL~~ 295 (528)
.. .....++..+..++ .. +-......++.+|.++--...... ........+..|+.+|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 32 22344455555552 11 125677788888888732211110 000111345666666543
Q ss_pred -----C---ChhhHHHHHHHHhHhhcCCcchhHHHh----------------ccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 296 -----S---STTVLVPALRTVGNIVTGDDTQTQCVI----------------DNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 296 -----~---~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
. -.....+.+.+|.+++.......+.+. ...+-..|+.++.+. .+.++..+...+
T Consensus 254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell 332 (446)
T PF10165_consen 254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL 332 (446)
T ss_pred HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence 1 135678889999999887654443332 124566788888888 688998888888
Q ss_pred HHHhcCCHH
Q 009700 352 SNITAGSRS 360 (528)
Q Consensus 352 ~nl~~~~~~ 360 (528)
..+|..+..
T Consensus 333 f~Lc~~d~~ 341 (446)
T PF10165_consen 333 FVLCKEDAS 341 (446)
T ss_pred HHHHhhhHH
Confidence 888765443
No 109
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00031 Score=72.21 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=162.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---HHHHHHhcCChHHHHHhhccc------hhhHHHHHHHHHhhhhc
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPS---CRDLVLSHGALMPLLAQLNEH------SKLSMLRNATWTLSNFC 229 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~---~~~~~~~~g~i~~Ll~ll~~~------~~~~~~~~a~~~L~~l~ 229 (528)
.+...+.+|++.+++-+-.++..+.+++...+. .++.+.+.=+...+-++|... +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 356677888887777777788888888765543 233456655566677777431 34667888999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCH-HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
..+.......+.+.+|.|+..+.+.+. ++..+++.+|..++. .++..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 965444556678899999999987776 999999999999994 45577889999999999999988 556788899999
Q ss_pred hHhhcCCcchhHH---HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH-HH----HHHHcCcHHHHHHHHcc
Q 009700 309 GNIVTGDDTQTQC---VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ-IQ----AVIEANIIAPLVYLLQH 380 (528)
Q Consensus 309 ~~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~----~l~~~~~i~~L~~ll~~ 380 (528)
.+++......... -.-..+++.+-..+... ....+-++|..|+.+....+.. .. .-.-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421100 00013455666666665 6677888899999988754211 11 11122345556666766
Q ss_pred C-ChHHHHHHHHHHHHhc
Q 009700 381 A-EFEVKKEASWAISNAT 397 (528)
Q Consensus 381 ~-~~~v~~~a~~aL~nl~ 397 (528)
. .+.-|..|......+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 6 4555655555555554
No 110
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0025 Score=69.91 Aligned_cols=342 Identities=17% Similarity=0.154 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
-+.-|+.-+..++...+..-... -..+||.|.++=-+++ +.+|..-..+...+..++....+.... .++.-|+.-|
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~--l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~l 1048 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPY--LKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNL 1048 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhH--HHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhc
Confidence 34444555555554431111111 1346899988877777 899988888888888865655555443 4677777778
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChh--HHHHHHhcCChHHHHHhhccchhhHHHHHH---HHHhhhhcCCC-----CCCCh
Q 009700 168 GSASDDVREQAVWALGNVAGDSPS--CRDLVLSHGALMPLLAQLNEHSKLSMLRNA---TWTLSNFCRGK-----PPAPF 237 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a---~~~L~~l~~~~-----~~~~~ 237 (528)
.+....+|+.++-+|..+....|. ..+.+.+ ....+.+.+ ++-.+.++..+ +.+|+.+|-.- +....
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 888899999999999999977653 2333222 333444444 45556666654 55666665443 22223
Q ss_pred hhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhH-HHHHHH--------
Q 009700 238 DQVRPALAALQH-LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL-VPALRT-------- 307 (528)
Q Consensus 238 ~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~-~~al~~-------- 307 (528)
..+..++|.|+. -+-+.-++++.-++.++..++...+........ .+++.|+.....-++.+. .-++++
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~eal 1204 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEAL 1204 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHH
Confidence 344566666652 122556899999999999999887755444333 367777777666555443 223333
Q ss_pred --HhH-hhcCCcchhHHH---h---c----cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 308 --VGN-IVTGDDTQTQCV---I---D----NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 308 --L~~-l~~~~~~~~~~~---~---~----~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
+.. .+.+.+. .+.+ + | ...+|.+.+++.++-.-..|..++..++-++........... ...+..+
T Consensus 1205 Dt~R~s~aksspm-meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al 1282 (1702)
T KOG0915|consen 1205 DTLRASAAKSSPM-METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRAL 1282 (1702)
T ss_pred HHHHHhhhcCCcH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHH
Confidence 111 1111111 1111 0 1 135666666666554445566666666666532111111111 1245566
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 375 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..+.+.+..+++..+.|.+.++....+++.+.+++ ..+..++...++. ...++..+.+|.....
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANYSQ 1347 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHhhH
Confidence 666777889999999999999999888877777654 2344444433321 1345555555554443
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.16 E-value=0.00013 Score=66.50 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=153.9
Q ss_pred hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHh-
Q 009700 123 FLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE-HGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLS- 198 (528)
Q Consensus 123 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~- 198 (528)
+++.-+ +-.+.-|+.|+.++.. .++.|..+-. ...-..++.+++. ...+++-..+.+++-+..... +.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 333334 5678889999999988 6777776543 3344567777766 557889999999998865443 4322221
Q ss_pred cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh--hh-HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCC
Q 009700 199 HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD--QV-RPALAALQHLIF--SSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 199 ~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~-~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~ 273 (528)
...+.-++++......+.+.+-++.++.|++...|..... .. .++.+..-.++. -.|++++.+.-..=+.+....
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 2346667777766678899999999999999854332221 11 223333333333 235665554433332222111
Q ss_pred h------------------------------HHHHHHHHh--CcHHHHHHHhcCCChh-hHHHHHHHHhHhhcCCcchhH
Q 009700 274 N------------------------------DKIQAVIEA--GVCPRLVELLLHSSTT-VLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 274 ~------------------------------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~al~~L~~l~~~~~~~~~ 320 (528)
. .+...+.+. .++..|.++++..++. ...-||.-++.++...++...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 0 122223322 4678889999987776 566788899999999998887
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.+...|+-..++.+++++ +++|+-+|+.++..+..
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 888899999999999999 99999999999877653
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=6.1e-05 Score=75.03 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=146.9
Q ss_pred HHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHH---HhhccCC--hHH-HH
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWAL---SYLSDGT--NDK-IQ 278 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l---~~l~~~~--~~~-~~ 278 (528)
+..+. .+.+..++..|+..|..|..+. ..-..+....++++...++.|+..|+..+ +|..-.+ .+. -.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 7778888888888888887642 12234567778888888999999885544 5554211 111 12
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH--hc
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI--TA 356 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 356 (528)
.+.+ .++..+...+.+.+..++..|..+||.+-..+++.....++..++..+-..=... +......++- ++
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence 2333 3788999999999999999999999998877776555555544333222111000 0111111111 11
Q ss_pred -----------CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 357 -----------GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 357 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
...+.-..++.+|.--.++.-+.+.-.+||..|...++.++... |.+... .+..|+++++.+.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence 11122334667788888888888888899999999999999853 343333 5889999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 009700 426 PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 426 ~~~~~~~l~~l~~i~~~~ 443 (528)
..++..++.+|..|....
T Consensus 424 ~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 113
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.11 E-value=0.00029 Score=64.33 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=147.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
|-++++.-++-.+--|..++.++............+..+-.+++.++++ ....++...+.+++-++-... ..+ .++
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~ 231 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQ-DID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHH-HHH
Confidence 3344444455556667777877776554444444454566778888876 346788899999988775432 221 111
Q ss_pred --cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC-HHHHHHHH-HcCcHHHHHHHHccC--ChHHHHHHHHHHHHh--
Q 009700 325 --NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS-RSQIQAVI-EANIIAPLVYLLQHA--EFEVKKEASWAISNA-- 396 (528)
Q Consensus 325 --~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl-- 396 (528)
...+.-++.+.+.....+|-+-+|.++.|++... ...+..+. ..++.|..--++..+ |.+++...-..=..+
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1345566667665546788899999999998733 33444444 344555544444332 444433221111111
Q ss_pred -------------------cCCCC--------HHHHHHHHHC--CChHHHHhhcCCCChH-HHHHHHHHHHHHHHhhhhc
Q 009700 397 -------------------TSGGT--------REQIQFLVSQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 397 -------------------~~~~~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-~~~~~l~~l~~i~~~~~~~ 446 (528)
..+.+ ...+..+.+. .+++.|..+++...+. .+..|+.-+..+.+..++
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 11111 1233444432 4688888888887766 566788888888887764
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
....+...||-+.|..|.+|+|++|+-.|.+.+..+.+
T Consensus 391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 35677899999999999999999999999888877654
No 114
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0059 Score=64.33 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=203.6
Q ss_pred cCcHHHHHHhhc------CCC-ChHHHHHHHHHHHHHhcC--ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 114 AGVVPRFVEFLD------RHD-LPQLQFEAAWALTNIASG--TSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 114 ~g~i~~Lv~lL~------~~~-~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
.|+++.+++.|. .++ ++.-...|++.++++++- .+..-+..++.-+++.+.-.++++.--+|..|+|.++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 356777888887 222 456778888888888751 11111222233345666667788889999999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC---ChhhhHHHHHHHHHHhcCCCHHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA---PFDQVRPALAALQHLIFSSDEEVLTD 261 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~d~~v~~~ 261 (528)
++...- ++...-..++....++|..+.+-.++..|+.+|..+..+.+.. ....+.+.++.|+++.+.-+.+....
T Consensus 489 ~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 983321 1122222356777788866788889999999999998886432 22334555666666666555554444
Q ss_pred HHHHH-HhhccCChHHHHHHHHhCcHHHHHHHhcC---CCh---hhHHHHHHHHhHh---hcCCcchhH--HHhccCChH
Q 009700 262 ACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLH---SST---TVLVPALRTVGNI---VTGDDTQTQ--CVIDNQGLP 329 (528)
Q Consensus 262 a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~---~v~~~al~~L~~l---~~~~~~~~~--~~~~~~~l~ 329 (528)
++..+ +..+..-....-.++. .+...+.+++.. .++ .-...|.++|..+ ...-+.... .-++..+++
T Consensus 567 vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44433 2333221111122222 255666677764 222 2233333333333 222222111 123445677
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.+-.+|.+. -.++-.+++..+.+++...++.--.+. |+++.+.+++.....+.-...+-+|.|++..|.+.....-.
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 777777777 778888888888888764433222233 47888888888888888899999999998877653322110
Q ss_pred -HCCChHHHHhhcCC---CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhc-CCCHHHHHH
Q 009700 410 -SQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS-HDNNEIYEK 484 (528)
Q Consensus 410 -~~~~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~-~~~~~v~~~ 484 (528)
-.-++..+..++.+ .|.+ ...+++.+..++...... ..++...+. -..+..+.. -.+...+..
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~kg~-------~dq~iplf~----~~a~~~l~~~~e~s~~~~~ 790 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCKGL-------LDQYIPLFL----ELALSRLTREVETSELRVM 790 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhcCc-------HhhHhHHHH----HHHHHHHhccccchHHHHH
Confidence 01123333344444 3333 345667776666544321 222333332 123444443 455556666
Q ss_pred HHHHHHH
Q 009700 485 AVKLLER 491 (528)
Q Consensus 485 a~~ii~~ 491 (528)
+.+++-+
T Consensus 791 ~leVvin 797 (1010)
T KOG1991|consen 791 LLEVVIN 797 (1010)
T ss_pred HHHHHHH
Confidence 6555444
No 115
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.07 E-value=0.00016 Score=76.81 Aligned_cols=296 Identities=15% Similarity=0.078 Sum_probs=187.1
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC----C
Q 009700 159 AVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK----P 233 (528)
Q Consensus 159 ~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~----~ 233 (528)
+++.+...+.+ ...+.+..|+..|..++..... ...-..++|.++.++ .++...++..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45666666665 5577888899988888743321 112223788899998 8888999999998888765432 2
Q ss_pred CCChhhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 234 PAPFDQVRPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
........-++|.|..++.+ ....++..-+..|..|+.... .+.+.+.-.....++...+.+ +..-
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse---------t~~~ 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE---------TAPE 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc---------cccc
Confidence 33334557888999999887 456667666777777765322 122222222233334444432 0000
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
...+...+.+.+ .+-+....+|.++ ++-||+.-+..|.-||..... .--+.=+++.|+..|.+.|+.+|..-...
T Consensus 566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 111122222222 4455677788877 788998888888888752111 01123368899999999999998766666
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
|.-++..-... -++.++++.|.+-|.++.+-++..+|.+|..+++.+--.+. .+.++ ++.+.-
T Consensus 641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-------~v~~i------~~~v~P 703 (1431)
T KOG1240|consen 641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP-------AVKDI------LQDVLP 703 (1431)
T ss_pred ccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH-------HHHHH------HHhhhh
Confidence 65443321111 13455788888999999999999999999999987753321 12222 345566
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 009700 473 LQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~~ 493 (528)
|.-|+|.=|+..+..+|....
T Consensus 704 lL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 704 LLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred heeCchHHHHHHHHHHHHHHH
Confidence 789999999998887776543
No 116
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.03 E-value=1.2e-05 Score=54.99 Aligned_cols=55 Identities=24% Similarity=0.580 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
+.+|..|+|+|++++...+...+.... .++|.|+.+|.+++..||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998888888777554 5999999999999999999999999875
No 117
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.012 Score=61.65 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
.+.+++...+.|.+++...-..+..+.... | ...+. .++.+.+=+.+++ +.+|..|++.++.+-. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 567777777888888877777777776652 3 22221 3778888888888 9999999999988754 33222
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+++++.+++.++++.+|..|+.++.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999975554 3566677777777777 889999999999999998765
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.97 E-value=1.9e-05 Score=60.17 Aligned_cols=87 Identities=29% Similarity=0.458 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 117 VPRFVEFL-DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 117 i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
||.|++.| ++++ +.++..|+++|+.+-. + .+++.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 58899999 6565 9999999999995532 2 24899999999999999999999999982
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
....++.|..++.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12268889999966667777888888874
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.97 E-value=0.00012 Score=67.15 Aligned_cols=186 Identities=19% Similarity=0.137 Sum_probs=120.8
Q ss_pred cCCCHHHHHHHHHHHHhhccCC--hHHHHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC
Q 009700 252 FSSDEEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG 327 (528)
Q Consensus 252 ~~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 327 (528)
.+.|++.+..++..|..++.+. ......+... .++..+...+.+....+...|+.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4568888999998888887655 2222333221 45667788888888889999999999999766555544433 57
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc-HHHHHHHHccCChHHHHHHHHHHHHhcCCCC--HHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI-IAPLVYLLQHAEFEVKKEASWAISNATSGGT--REQ 404 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~--~~~ 404 (528)
++.|+..+.++ ..-++..|..+|..++...+... .+ ++.+...+.+.++.+|..++..+..++...+ ...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899999888 88899999999999987554111 12 5667777889999999999999999877544 111
Q ss_pred HHH-HHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 405 IQF-LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 405 ~~~-l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
... ..-..+++.+..++.+.+++++..+-.++..+....+.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 111 00123678899999999999999999999998877654
No 120
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.96 E-value=9e-05 Score=68.01 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHh--cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHH
Q 009700 168 GSASDDVREQAVWALGNVAGDS--PSCRDLVLS--HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPA 243 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 243 (528)
.+.+.+.|..++.-|..++... ......+.. ..++..+...+ .+....+...++.++..++......-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5578999999999999988554 222222221 13445666666 666778999999999999877543333456788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+|.|+..+.+....++..+..+|..++...+..... +++.+...+.+.++.++..++..+..+....+.....+-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 999999999999999999999999998865411111 256777888999999999999999999866551111111
Q ss_pred c----cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 324 D----NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 324 ~----~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
. ..+++.+...+.++ ++.||..|-.++..+....++....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 1 24778888999999 9999999998888886644444433
No 121
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.93 E-value=8e-05 Score=57.17 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
.|+.++++|+.++.+-+..+...++ .++|+++..+.+++.+||..||.+|.|++.....+...++.+ ++..|+.++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 3677888888887665555655554 489999999999999999999999999998765555555544 8889999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 009700 423 CPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 423 ~~~~~~~~~~l~~l~~i~~ 441 (528)
..|+.++..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987654 77777764
No 122
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.0024 Score=57.15 Aligned_cols=245 Identities=18% Similarity=0.232 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+.....++.|+..|+++.... . +..+.+...++. ...+.+.+.+|+.... ..++|.
T Consensus 16 s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~ 71 (289)
T KOG0567|consen 16 SQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPV 71 (289)
T ss_pred cHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHH
Confidence 334567788888888876542 2 333344444433 4566677777777654 346788
Q ss_pred HHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC--------
Q 009700 163 FVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-------- 232 (528)
Q Consensus 163 L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-------- 232 (528)
|+..|.. ..+-+|..|..+|+++. + +. .++.+-+.. +++-..+...+..++..+-+..
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 8877765 45778888888888875 2 21 233333444 5555555555555555443221
Q ss_pred -------CCCChhhhHHHHHHHHH-HhcCCCHHH-HHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHH
Q 009700 233 -------PPAPFDQVRPALAALQH-LIFSSDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVP 303 (528)
Q Consensus 233 -------~~~~~~~~~~~l~~L~~-ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 303 (528)
|.+. ....-+.-+-. ++..+.+.. +..+.+.|.|+-. .+ .+..|..-+..++.-++..
T Consensus 140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHH
Confidence 1111 11122333333 333333333 3345555555432 11 3455667777788889999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCC
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAE 382 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 382 (528)
+..++|.+-+ .-.++.|.+.|... .++.||.+|+.+|+.++. ++ .++.|.+.+.+.+
T Consensus 207 vAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 207 VAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence 9999997654 23456677776543 278999999999999963 33 4566777788888
Q ss_pred hHHHHHHHHHHHHhcC
Q 009700 383 FEVKKEASWAISNATS 398 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~ 398 (528)
+-|++.+..+|.-+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888765543
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=4.9e-05 Score=57.92 Aligned_cols=87 Identities=29% Similarity=0.431 Sum_probs=70.4
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 244 LAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 244 l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
+|.|++.+ .++++.++..++++|+.+. .. .+++.|..++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 7889999999999999653 11 26889999999999999999999999873
Q ss_pred hccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 323 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
+...++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12367789999988746677999998875
No 124
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.048 Score=57.32 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=125.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
+.+++...+..|++.+..-+..+ .+ . .-+.|-+++...+.+ .+++.-.-.-|.+++...|+..-. ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 56667777777776644333332 22 2 224677788877666 899999888999999977744332 46
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
+.+.+=++++++.+|..|+++++.+= .++.-. .+++++.+++ .+++..+++.|+.++..+-+-++. ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence 88888899999999999999999872 222212 2678888888 888999999999999999866432 2223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.|.+..+..++.+.|+.+..+|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 45677778888899999999999999988654
No 125
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0014 Score=64.60 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF 163 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 163 (528)
.-..+.+++++.+..+.... - ....++ ..+..|-.+|+++. ...|..|+++|..++...|+... + +=+-+
T Consensus 276 k~emV~lE~Ar~v~~~~~~n--v-~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-v----cN~ev 345 (898)
T COG5240 276 KFEMVFLEAARAVCALSEEN--V-GSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-V----CNKEV 345 (898)
T ss_pred cchhhhHHHHHHHHHHHHhc--c-CHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-e----cChhH
Confidence 33455666666665544331 0 011111 12455555666665 56666666666666664332211 0 11233
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHH
Q 009700 164 VQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPA 243 (528)
Q Consensus 164 ~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 243 (528)
-.++.+.+..+...|+..|..- +..+.-+.+ +..+..++ .+-+.....-+..++..||-..|.... ..
T Consensus 346 EsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~----s~ 413 (898)
T COG5240 346 ESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKL----SY 413 (898)
T ss_pred HHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHH----HH
Confidence 3344444444444444444332 111111111 11122222 222333333444444555544343322 23
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHhHhhcCCcchhHH
Q 009700 244 LAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 244 l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
+..|...| +.+.-+....+..+++.+....++..+. .++.|+..+.+.. +.+....+.+||.=....+.-.
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~-- 486 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG-- 486 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc--
Confidence 33444333 3456677888888888877776554443 4566777776533 3444444444443222111111
Q ss_pred HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
..+..+..-+--. +.-+|..|..+|+-++-.-.+ .+....+...|-+++.+.|.++|..|..+|.++-.
T Consensus 487 ----~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 487 ----KYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ----hHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 1233344333334 667899999999887653211 11222355677788999999999999999998864
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0069 Score=59.96 Aligned_cols=279 Identities=14% Similarity=0.123 Sum_probs=141.6
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHHHHHhhccchh
Q 009700 137 AWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMPLLAQLNEHSK 214 (528)
Q Consensus 137 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~Ll~ll~~~~~ 214 (528)
+++...+...+++....+ .|.|-..|++..+.+.-.++++++.++... ++.-+. .+..|-.+| +++.
T Consensus 248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~~fL-~s~r 316 (898)
T COG5240 248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQ-----TVSSLRTFL-KSTR 316 (898)
T ss_pred HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHH-hcch
Confidence 344444444444443333 355666666666777777888887776443 221111 344444455 6777
Q ss_pred hHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc
Q 009700 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 215 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
...+-.|+.+|..|+...|.... .+-+-+-.++.+.+..+..+|+-+|.. .+.++.+..++. .++.+++=+.
T Consensus 317 v~~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~S 388 (898)
T COG5240 317 VVLRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhc
Confidence 78888888888888877654322 222334455555666666665555543 234444444333 3444444444
Q ss_pred CCChhhHHHHHHHHhHhhcCCcc-hh----HHHhccCC-------hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDT-QT----QCVIDNQG-------LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~-~~----~~~~~~~~-------l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
++-.-+...|++.|+..-..... .. ..+.+.|. ++.+..+++. +|.-++.|+..|+.+..++.-..
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~ 466 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQ 466 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhH
Confidence 44444455555555544322111 00 01111221 2223333322 33444444444444333211110
Q ss_pred --HHHH----HcC--------cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 363 --QAVI----EAN--------IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 363 --~~l~----~~~--------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
-.++ +.| .+..+..-+--.+.-+|..|..||..++.+.+.... ...+...|-++++..|.++
T Consensus 467 I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~~sv~~~lkRclnD~DdeV 542 (898)
T COG5240 467 ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----PQSVENALKRCLNDQDDEV 542 (898)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----HHHHHHHHHHHhhcccHHH
Confidence 0000 000 122222222223556888999999888876543221 2234567888999999999
Q ss_pred HHHHHHHHHHHH
Q 009700 429 VTVCLEGLENIL 440 (528)
Q Consensus 429 ~~~~l~~l~~i~ 440 (528)
+..+--++.++=
T Consensus 543 RdrAsf~l~~~~ 554 (898)
T COG5240 543 RDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhh
Confidence 998887777654
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.01 Score=63.14 Aligned_cols=260 Identities=14% Similarity=0.116 Sum_probs=161.5
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+++..|...|++.+ ..++-.|+..++.++...|..- . ..++...+.++.. .++..-..++-+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56778888888888 8999999999999999665221 1 2345566665544 335566688889999985542211
Q ss_pred HHHHhcCChHHHHHhhcc-------chhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHH-HHHhcCCCHHHHHHHHH
Q 009700 194 DLVLSHGALMPLLAQLNE-------HSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAAL-QHLIFSSDEEVLTDACW 264 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L-~~ll~~~d~~v~~~a~~ 264 (528)
..+.+ +++.++..|.. +....++..||.+++.+++.. |.........+.+.| ...+-+.+..++..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 22222 45556655521 224578999999999999886 322223334344433 34455667778888888
Q ss_pred HHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hcccCchhH
Q 009700 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LTQNYKKSI 343 (528)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v 343 (528)
++........+. .. +++ |+.....-....+.++-..+..-....+.....+++ .++.. +.+= +..+
T Consensus 494 AlqE~VGR~~n~-----p~-Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-----PH-GIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-----CC-chh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 887554331111 00 111 222223333344556666666555555555544443 23222 5555 8999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
|..++|+|.+++...++. ...+.+|+++....+++...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999999999987655543 345789999999999988888777666666655
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0081 Score=57.66 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=161.9
Q ss_pred HHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h----hhHHHHHhcCChHH
Q 009700 92 ATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S----EHTRVVIEHGAVPK 162 (528)
Q Consensus 92 a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~i~~~g~i~~ 162 (528)
.++.+.-++.. +.-...+++.+.++.|+.+|.+.+ .++....+..|..++..+ . .-.+.+++.++++.
T Consensus 104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 34455544443 344557789999999999999998 899999999999988732 1 23456778889999
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-hhhHHHHHHHHHhhhhcCCCCCC
Q 009700 163 FVQLLGSAS------DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-SKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 163 L~~lL~~~~------~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
|++-+..-+ ..-...++..+-|+....+.+...+.+.|.+.-|+..+... +-..-..+|..+|+-+..+....
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 999876532 23456677888899988888888889988888777755322 34455678888888887775322
Q ss_pred C-hhhhHHHHHHHHHHhc----CC-----CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHH
Q 009700 236 P-FDQVRPALAALQHLIF----SS-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 236 ~-~~~~~~~l~~L~~ll~----~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al 305 (528)
. ...--.++..+++-+. ++ ..+..++...+|+.+.... ++...++...+++...-+++. ....+..++
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 1 1112334444444332 21 2456667777777666554 456667777677766666665 555678899
Q ss_pred HHHhHhhcCCc--chhHHHhccCChHHHHHHhc
Q 009700 306 RTVGNIVTGDD--TQTQCVIDNQGLPRLYQLLT 336 (528)
Q Consensus 306 ~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~ 336 (528)
++|-.+..+.+ .....+++..++..+..+.-
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99998888776 34445667667777666554
No 129
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00034 Score=67.36 Aligned_cols=298 Identities=16% Similarity=0.201 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-----ChhhHHHHHhcCCh
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-----TSEHTRVVIEHGAV 160 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i 160 (528)
..++.++++.|.-++... ..-.+....+...+...+.... ++++..++.++..+..+ .|+..+.-...|.+
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 357788887777665442 1111122223344444555666 89999999988877541 22222222222211
Q ss_pred HHHH-------HhhCCCCHHHHHHHHHHHHHhhCCC----hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 161 PKFV-------QLLGSASDDVREQAVWALGNVAGDS----PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 161 ~~L~-------~lL~~~~~~i~~~a~~~L~nl~~~~----~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
-.+. ...++..+..+...+.++.+|.... |+-++. ..+.++.-..++.+.-++..|..++.-+.
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV 419 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV 419 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence 1110 1122344566777777788775332 111111 12222333323344456677778877777
Q ss_pred CCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC----Ch---HHHHHHHHhCcHHHHHHHhc---CCCh
Q 009700 230 RGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG----TN---DKIQAVIEAGVCPRLVELLL---HSST 298 (528)
Q Consensus 230 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~~L~~lL~---~~~~ 298 (528)
-++ ..........+...+...+.+..-..++.+.|+++++++. .+ .....+.. -.+..++..-. ..+.
T Consensus 420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD 498 (728)
T ss_pred eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 665 3334455567777777777776778899999999999752 11 11111111 12333333221 2567
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChH----HHHHHh----cccCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLP----RLYQLL----TQNYKKSIKKEACWTISNITAGSRSQIQAV-IEAN 369 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~----~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~ 369 (528)
.++..+.++|+|+...-+ .+.+.+.-. .+.+++ ... ...||.+||++++|+..+..-..+.. ....
T Consensus 499 kV~~navraLgnllQvlq----~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~ 573 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQ----PIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKNPALPLQTAPWASQ 573 (728)
T ss_pred hhhhHHHHHHhhHHHHHH----HhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcCccccccCCCchHH
Confidence 899999999999875322 122211111 111222 223 67899999999999987422111100 1123
Q ss_pred cHHHHHHHHcc-CChHHHHHHHHHHHHhcC
Q 009700 370 IIAPLVYLLQH-AEFEVKKEASWAISNATS 398 (528)
Q Consensus 370 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~ 398 (528)
+++.|+.++.+ .+.+||..|+.+|.--..
T Consensus 574 ~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 574 AFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 57778777754 589999999999875544
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.017 Score=55.50 Aligned_cols=224 Identities=15% Similarity=0.131 Sum_probs=158.8
Q ss_pred HhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccc----CCc----hhHHHHhcCcHHHHHHhhcCCC-----ChHHHHH
Q 009700 69 KKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIE----RCP----PIEEVIRAGVVPRFVEFLDRHD-----LPQLQFE 135 (528)
Q Consensus 69 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~Lv~lL~~~~-----~~~v~~~ 135 (528)
.++++++.+++.|.+++.++....+..+..+.... ... -++.+++.++++.|++.+..=+ ...-...
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 45678999999999999999999998888876542 112 2567788999999999886432 1233466
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---
Q 009700 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--- 210 (528)
Q Consensus 136 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--- 210 (528)
++.++-|+..-.++.+..+++.|.+.-|++-+.. +.......|..+|+-+..++...+..+-...++..+++.+.
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 7788899999889999999999988888774433 44566778888888888887777777778888888888773
Q ss_pred -cc----hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh--HHHHHHHHh
Q 009700 211 -EH----SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN--DKIQAVIEA 283 (528)
Q Consensus 211 -~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~ 283 (528)
++ ...++.++...+|+.+...+...........+..+.-+++. ....+..++.+|-+...+++ .+...+++.
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 11 24567788888888877775444444445555555555544 44456667778877776655 556666776
Q ss_pred CcHHHHHHHh
Q 009700 284 GVCPRLVELL 293 (528)
Q Consensus 284 ~~l~~L~~lL 293 (528)
.++..+..++
T Consensus 361 lGLrtiF~~F 370 (536)
T KOG2734|consen 361 LGLRTIFPLF 370 (536)
T ss_pred HhHHHHHHHH
Confidence 6666655544
No 131
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0039 Score=63.48 Aligned_cols=241 Identities=19% Similarity=0.226 Sum_probs=149.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
|+...|.+.|++.+++.++.-++.-|+-...++... . +...+-..|..++.-.-+.|..+++-+-..+.. .+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~--e-----iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e 484 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE--E-----IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE 484 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH--H-----HHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence 456667777776665677777766665555543321 1 224455556655555566666666655433321 11
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH--hhccC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS--YLSDG 272 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~ 272 (528)
++.-++..-...+.+.+++-..--++....+.. ...=+.+-+++.+.|+-++.....++. +...+
T Consensus 485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq-------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg 551 (929)
T KOG2062|consen 485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ-------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTG 551 (929)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh-------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Confidence 233344444344455555544433333222211 244456667788888888877766554 33333
Q ss_pred ChHHHHHHHHhCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
+. +++..|++. .++.+..|++.|.-+||-++..++++ ++..+++|..++++.||..++.+|
T Consensus 552 nn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 552 NN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred ch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHH
Confidence 22 467777777 66788999999999999988776654 456788888777999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
+-.|+++...- .+..|-.+..++..-||+-|+.++.-+....+
T Consensus 614 GIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 614 GIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 99988543321 23344445567777899999998887766444
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.66 E-value=0.00019 Score=49.02 Aligned_cols=55 Identities=29% Similarity=0.501 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+.++..++|+|++++...++....... .+++.|..+|.++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999888777766555 4999999999999999999999999975
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.029 Score=59.36 Aligned_cols=344 Identities=17% Similarity=0.163 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHHhccc-CCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 009700 85 NSGLQLEATTQFRKLLSIE-RCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF 163 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 163 (528)
++.....|+..+..+++.- +..+-+...+.=+++.+...++++. --++..|+|+++.+++.+-.....+ ..++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 3445555666666555432 1333333444445666666777777 7899999999999996322222222 2355666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHh--cCChHHHHHhhccchh----------------------hHHH
Q 009700 164 VQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLS--HGALMPLLAQLNEHSK----------------------LSML 218 (528)
Q Consensus 164 ~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~Ll~ll~~~~~----------------------~~~~ 218 (528)
.+.|. +.+-.++..|+-+|..+..+.+.....+.. .+.++.|+.+.+...+ .++.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 66666 667788999999999888776644332222 0122333333321111 1222
Q ss_pred HHHHHHhhhhcCC---C-C--CCChhhhHHHHHHHHHHhc-------------------------CCCHHHHHHHHHHHH
Q 009700 219 RNATWTLSNFCRG---K-P--PAPFDQVRPALAALQHLIF-------------------------SSDEEVLTDACWALS 267 (528)
Q Consensus 219 ~~a~~~L~~l~~~---~-~--~~~~~~~~~~l~~L~~ll~-------------------------~~d~~v~~~a~~~l~ 267 (528)
.+...+...+... . + ........|++..+..++. +.-.++-+.++..+.
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3333333333332 1 1 1112233455555444443 222333333333333
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc-----CChHHHHHHhcccC-ch
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN-----QGLPRLYQLLTQNY-KK 341 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~-~~ 341 (528)
++.....+..- .--++++.+.+.+....-.......-+|.|+++.... .+... -++..+..+|.+.. ..
T Consensus 668 ~~t~~~~~Isp--~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D 742 (1010)
T KOG1991|consen 668 SLTFLSKEISP--IMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGED 742 (1010)
T ss_pred hhhhhhcccCH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCch
Confidence 33222111000 0114566667777766666677778888888754332 12211 23445555665531 33
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc----c--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 009700 342 SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ----H--AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415 (528)
Q Consensus 342 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 415 (528)
.-...||..+.-+.-.....++. .+|.++++.. . .+...+..+..++.|.....+..-...|-+.|...
T Consensus 743 ~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~ 817 (1010)
T KOG1991|consen 743 SDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLN 817 (1010)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcc
Confidence 44556777777665422222222 4555555432 2 35678888888888888777777788887877765
Q ss_pred HHHhhc--------CCCChHHHHHHHHHHHHHHHhhh
Q 009700 416 PLCDLL--------VCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 416 ~L~~ll--------~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+..+. +..|.+ .++-+|..++..++
T Consensus 818 ~ff~~wf~~~~~~~~~HDkK---lcvL~l~tli~l~~ 851 (1010)
T KOG1991|consen 818 NFFTLWFQFINQFKKVHDKK---LCVLGLLTLISLGQ 851 (1010)
T ss_pred cHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHhccc
Confidence 544432 222333 45556667777653
No 134
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00037 Score=67.12 Aligned_cols=263 Identities=18% Similarity=0.155 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCChhHHHHHHhcCChH--
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA-----GDSPSCRDLVLSHGALM-- 203 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~-- 203 (528)
.++.+++.+|..++..-.-.+..+++ ....+..-+....+.++..+..++..+- .+.|+..+.-...|.+-
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 46777887877777633333333332 2234444556678889999888887764 22232211111112111
Q ss_pred ----HHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHH
Q 009700 204 ----PLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 204 ----~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
+.-....++.....+...|-+++++.... .......-...+-.+..+-.+.+.-+...|.+++.-+.-++.-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11112223334567778888888887553 1111111111122222222233455777888888777666544444
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----Ccc---hhHHHhccCChHHHHHHhc--ccCchhHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDT---QTQCVIDNQGLPRLYQLLT--QNYKKSIKKEACW 349 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~---~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~ 349 (528)
...-......+...+.+..-..+..+.|++|||+.. .+. +...+.- -.+..++..-. +..+.+|+..+..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 433344667777777777788999999999999742 222 2222211 11222222221 1225789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CcHHHHH-HHHccCChHHHHHHHHHHHHhcCCC
Q 009700 350 TISNITAGSRSQIQAVIEA-------NIIAPLV-YLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~-------~~i~~L~-~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
+|+|+.. ..+.+.+. +-+..++ ...-.+..+||=+||++++|+..+.
T Consensus 507 aLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 507 ALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9999853 12212211 1112222 2223346789999999999999854
No 135
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.61 E-value=0.0077 Score=62.82 Aligned_cols=240 Identities=15% Similarity=0.080 Sum_probs=153.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 119 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
.+-..+..+..|.+-..+.|.+...++........+- -.+...+..+. +..+.++-.|+++++..|+... +.. .
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~ 527 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L 527 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence 3334444444477777899998877763222221111 12233333333 3556678888888888773322 111 1
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF--SSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
..+++..|+++. ...+.++....+.+|+..+.-+|.......+.+.|.+..++. ++|+.+...+.-++-.++....
T Consensus 528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~- 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA- 605 (1005)
T ss_pred chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-
Confidence 223556666666 666788889999999999998877777777788887776653 5678777777777766665321
Q ss_pred HHHHHHHhCcHHHHHHHhcCCC----hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLHSS----TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
+...+.+ ..+|.+++.|..+. ......++..|..+..+.+.-....+-.-.++.+.+..-++.+...-..+..+|
T Consensus 606 ~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 606 NYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 2222222 38899999998866 455667788888787776543333444456777777766554788888888899
Q ss_pred HHHhcCCHHHHHHHH
Q 009700 352 SNITAGSRSQIQAVI 366 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~ 366 (528)
..+...+.++...--
T Consensus 685 ra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 685 RALISVTLEQLLTWH 699 (1005)
T ss_pred HHHHhcCHHHHHhhc
Confidence 888876666654443
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.58 E-value=0.037 Score=55.63 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCc----hhHHHHhcCcHHHHHHhhcCCC------ChHHHHHHHHHHHHHhcCC-hhhHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCP----PIEEVIRAGVVPRFVEFLDRHD------LPQLQFEAAWALTNIASGT-SEHTRV 153 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l~~~~-~~~~~~ 153 (528)
+.......+..+.+++...... ......+..++|.+.+...... +..+...+..++..+...- .+..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556667777777776653221 2334445558888887764321 1344455555555555532 333333
Q ss_pred HHhcCChHHHHHhhC----------CCC--HHHHHHHHHHHHH-hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHH
Q 009700 154 VIEHGAVPKFVQLLG----------SAS--DDVREQAVWALGN-VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRN 220 (528)
Q Consensus 154 i~~~g~i~~L~~lL~----------~~~--~~i~~~a~~~L~n-l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~ 220 (528)
++ ..+..+.- ..+ .......+..+.. +++-.+.+.-. .....+..++.+.....++..+..
T Consensus 136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence 32 22232221 011 1112222222222 22222221100 111256667777656667778888
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHh-cCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLI-FSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
++.+++.+.-.-+.. ......+..+...+ ...+ ....+-..|+..-+.-....... .++..|+.+|.+
T Consensus 210 ~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~ 282 (415)
T PF12460_consen 210 ALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence 888888777553222 23445555555444 2223 33344444555443322221211 256778888887
Q ss_pred CChhhHHHHHHHHhHhhcCCcc--------hhHHHhcc----CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 296 SSTTVLVPALRTVGNIVTGDDT--------QTQCVIDN----QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+.+...+.+.++-+....+. ..+.+... .++|.+++..... +...|.....+|+++..+-|..+-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence 56788888888888876322 22223332 3456666666665 556788888999999987776542
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.---..++|.|++.|..++.+++..++.+|..+....
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222458999999999999999999999999998865
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.011 Score=63.05 Aligned_cols=257 Identities=12% Similarity=0.152 Sum_probs=158.8
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+++..|+..|.+.+..++-.|+..++.++...|. .. ...++...+.++....+......+|-+|..|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 5677888888889999999999999999977762 22 22256677776644445667779999999999875 1222
Q ss_pred hhhHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHH-HHHHHhcCCChhhHHHHHHH
Q 009700 238 DQVRPALAALQHLIFSS--------DEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCP-RLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~--------d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~-~L~~lL~~~~~~v~~~al~~ 307 (528)
.....++|.+.+.+.-+ ...|+..||.+++.++.... .....++.. +.+ .+...+-+.+-.+|..|..+
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHHH
Confidence 34567888888777532 35688888777777765432 222333322 222 23344566788889988888
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH-HccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL-LQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~ 386 (528)
+-..+...... ..| + .|+.....- .-..|..+...++.-.+..+..+..+++ .|+.. +.+-+..+|
T Consensus 495 lqE~VGR~~n~-----p~G-i-~Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 495 LQENVGRQGNF-----PHG-I-SLISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIR 561 (1133)
T ss_pred HHHHhccCCCC-----CCc-h-hhhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHH
Confidence 87666432211 011 1 122222222 3344555555555555555555554443 22222 455689999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
..++++|.++.... ++. ...+.++++++...+.+...+..+.-+...
T Consensus 562 elaa~aL~~Ls~~~-pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTE-PKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred HHHHHHHHHHHHhh-HHh----hcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 99999999987743 222 345678888888888877665544443333
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.50 E-value=0.00078 Score=51.69 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc
Q 009700 132 LQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGDSPSCRDLVLSH 199 (528)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 199 (528)
++...+.+++|++..++...+.+.+.|++|.+++.. +..+|-+++.|++++.|++.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356778999999999999999999999999999864 45789999999999999999999988876653
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.0003 Score=44.52 Aligned_cols=39 Identities=36% Similarity=0.753 Sum_probs=35.6
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVA 186 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 186 (528)
++.+..+++.|+++.|+.+|.+++++++..++|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999996
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.01 Score=60.95 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
...+..|..+|.. +.-+...+...++..+....++.... ++..|+..+.+.. ...-+.++|.-+....+.
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce--~~~i~~rILhlLG~EgP~-- 460 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE--FTQIAVRILHLLGKEGPK-- 460 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc--chHHHHHHHHHHhccCCC--
Confidence 3455666666654 34566677777777776654443332 4556666665533 333445555555443332
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.......+..+...+.-. +..+|..|..++.++.++++... ..+.-.|.+++.+.+.++|..|..+|.++.
T Consensus 461 -a~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 461 -APNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 112234455566555555 77899999999999986544322 345667788899999999999999999887
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.45 E-value=0.021 Score=57.97 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=147.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
..++...+ ++ ...+..|+..+.......|+..+. ++..++.+..+.+..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 33444444 34 788999999999999887877654 5688999999999999999999999999998765554
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc---CCCHHHHHHHHHHHH-hhccCC
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF---SSDEEVLTDACWALS-YLSDGT 273 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~-~l~~~~ 273 (528)
+...|+++| ..++..-...+-++|..|...+| .+.+..+...+. ++|+.+++.++..|. .+-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 456788888 56666666666677777665433 334444444443 567888998887664 222211
Q ss_pred hHHHH--HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC----CcchhHHHhccCChHHHHHHh------cccCch
Q 009700 274 NDKIQ--AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG----DDTQTQCVIDNQGLPRLYQLL------TQNYKK 341 (528)
Q Consensus 274 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~ 341 (528)
.+... .=.+.-++..+-..|.+-...--...+.+|..+-.. .....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 111112445566666653333233344444444431 11112222 22333322 112 33
Q ss_pred hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH
Q 009700 342 SIKKEACWTISN----ITA--GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK 415 (528)
Q Consensus 342 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~ 415 (528)
........++.. ++. .+.....++.+ .++|.+-.+ ....|...+.++..++..+.......++. -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 333222222222 111 34555555555 477766555 45677788888888887654322222221 1223
Q ss_pred HHHhhcCC--CChH----HHHHHHHHHHHHHHhhhh
Q 009700 416 PLCDLLVC--PDPR----IVTVCLEGLENILKIGEA 445 (528)
Q Consensus 416 ~L~~ll~~--~~~~----~~~~~l~~l~~i~~~~~~ 445 (528)
.|..++-. ..++ .++..+.++..+....+.
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 33333322 2233 466777777777766553
No 142
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.063 Score=58.10 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=144.1
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHH
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAV 280 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~ 280 (528)
.+.....++.+..++..+...|..++..++... ...+..+...|..-+++.+...+...+.++..|.+..+ +..+.
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~- 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL- 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-
Confidence 344455455678899999999999998842221 22335556666777777788888888888888877655 33333
Q ss_pred HHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc-------CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 281 IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT-------GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
+.. .++.++-.++..+...+..|..+|-.++. +++. ....++ .++..|...+-.. ...+......+++.
T Consensus 736 i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 736 IPK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITH 811 (1176)
T ss_pred HHH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHH
Confidence 333 34444444477788888888888777773 1111 111111 2333333333333 33333333444554
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHH
Q 009700 354 ITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCL 433 (528)
Q Consensus 354 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l 433 (528)
+..........-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+-
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4432222111111234566677778899999999999999999887654443332 224688888888888888888888
Q ss_pred HHHHHHHHhhh
Q 009700 434 EGLENILKIGE 444 (528)
Q Consensus 434 ~~l~~i~~~~~ 444 (528)
..|..+++...
T Consensus 891 ~LlekLirkfg 901 (1176)
T KOG1248|consen 891 LLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhC
Confidence 88888887654
No 143
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0099 Score=60.79 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=172.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..+-+.|+++++-+|=..++-|+++= .+..- ..++|.+.+.|.+.+ +-++..|..++..|-.... .+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk----E~ELl----epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L 168 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPELL----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HL 168 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC----cHHHh----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hh
Confidence 45566777888877777776666552 22211 335888899999888 8899999988888876211 11
Q ss_pred HhcCChHHHHHhh-CCCCHHHHHHHHHHHHH----------------------------------hhCCChhHHHHHHhc
Q 009700 155 IEHGAVPKFVQLL-GSASDDVREQAVWALGN----------------------------------VAGDSPSCRDLVLSH 199 (528)
Q Consensus 155 ~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~n----------------------------------l~~~~~~~~~~~~~~ 199 (528)
+. .+-..+-.+| ...++..++.|...|.. .|...|.-+ .
T Consensus 169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~ 242 (948)
T KOG1058|consen 169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----A 242 (948)
T ss_pred cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----h
Confidence 10 1111112222 22344444444433322 222112111 1
Q ss_pred CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHH
Q 009700 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 200 g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
..+..+..+| .+.+..+.-.+..+|.+++..+ . .+......++.++. .+|..+.--.+--|..+.....
T Consensus 243 ~~i~~i~~lL-~stssaV~fEaa~tlv~lS~~p-~----alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~---- 312 (948)
T KOG1058|consen 243 RYIRCIYNLL-SSTSSAVIFEAAGTLVTLSNDP-T----ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE---- 312 (948)
T ss_pred HHHHHHHHHH-hcCCchhhhhhcceEEEccCCH-H----HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----
Confidence 1234444455 3335555555555555555431 1 11222223333322 1222222222222333322111
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc------ccCchhHHHHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT------QNYKKSIKKEACWTIS 352 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~ 352 (528)
.+. .|++--++..|.+++-+++..++.+.-.+++..... . ++..|..-+. +......|..-..++.
T Consensus 313 ~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve--d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 313 KIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE--D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH--H-----HHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 111 135556778888899999999998888777643311 1 1112222111 1113467888888999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTV 431 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~ 431 (528)
.++...|+.. +.+++.|++.+.+.++......+..+....... +..+ ...+..|+.-+.. ...++...
T Consensus 385 ~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr-----~~ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 385 ACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLR-----ASIIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred HHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHH-----HHHHHHHHHhhhhhcccccchh
Confidence 8888777754 457899999999988776666666666555532 2221 2234445444433 56677788
Q ss_pred HHHHHHHHHHhhh
Q 009700 432 CLEGLENILKIGE 444 (528)
Q Consensus 432 ~l~~l~~i~~~~~ 444 (528)
++|++...+....
T Consensus 454 alwi~GeYce~~~ 466 (948)
T KOG1058|consen 454 ALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhhhH
Confidence 8998888876554
No 144
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.28 Score=53.36 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=113.9
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChH--HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG 327 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 327 (528)
..++.+..++..+...|..++..+.. .....++ .+...+..-+++.....+...+.+|..+....+.....++...+
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~-~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I 740 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRID-DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI 740 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33455789999999999999877221 1111111 24555666666777788999999999998766632223444344
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC------cHHHHHHHHcc----CChHHHHHHHHHHHHhc
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEAN------IIAPLVYLLQH----AEFEVKKEASWAISNAT 397 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~------~i~~L~~ll~~----~~~~v~~~a~~aL~nl~ 397 (528)
.+.++.+ +.. +...|+.|..+|-.|++ ++...+.| .+..++..+.. ....+...-+.++..+.
T Consensus 741 ~EvIL~~-Ke~-n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 741 PEVILSL-KEV-NVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHhc-ccc-cHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4455544 555 88899999999988874 22222222 33344444333 33333333345555554
Q ss_pred C----CCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 398 S----GGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 398 ~----~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
. ..+.+... +++..++.+|.+..++++..|+..+..++...+..
T Consensus 814 ~e~~~~ld~~~l~-----~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 814 QEFKNILDDETLE-----KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHhccccHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 3 22233322 35778888999999999999999998888766654
No 145
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.18 Score=52.29 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh
Q 009700 240 VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT 319 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 319 (528)
.....+.+-.++.+..+.+...+..++.++.......... .+..|-.++.++...+|-.|.++|..++...+...
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 3567888889999999999999999999988765433222 56777788889999999999999999987655321
Q ss_pred -------HHHh-ccC---ChHHHHHHhcccC---chhHHHHHHHHHHHHhcCC----HHHHHHHH------HcCcHHHHH
Q 009700 320 -------QCVI-DNQ---GLPRLYQLLTQNY---KKSIKKEACWTISNITAGS----RSQIQAVI------EANIIAPLV 375 (528)
Q Consensus 320 -------~~~~-~~~---~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~----~~~~~~l~------~~~~i~~L~ 375 (528)
+.++ +.+ .-..+..+|+.+. -..+.+.....+++++.+. .+.+..+. ..+.++.|.
T Consensus 318 ~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 318 TVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 1111 100 1112233333331 1223333333444443211 11111111 133455555
Q ss_pred HHHcc-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcc
Q 009700 376 YLLQH-AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTA 454 (528)
Q Consensus 376 ~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~ 454 (528)
.+|.. +..+.+.....++..++... ++.. .-++..||..+.+. +....+...|..+-..++......++..
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~-pdsK-----e~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEEN-PDSK-----ERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhC-cchh-----hHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 55543 34666666777776666532 2221 12566777776532 2233445555555555554332211100
Q ss_pred -----hhhHHHhhhcccHH------------------HHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 455 -----NVYSEMIDECDGLD------------------KIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 455 -----~~~~~~l~~~g~~~------------------~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
-.+...+.+++... .+.....+++.+++++|...+...-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 00122223333332 3334456777788888877776554
No 146
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.41 E-value=0.00047 Score=43.62 Aligned_cols=39 Identities=49% Similarity=0.625 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+....+++.|+++.|+.++.+++++++..|+|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 356678899999999999999999999999999999863
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.38 E-value=0.037 Score=58.01 Aligned_cols=313 Identities=15% Similarity=0.099 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 162 (528)
+..|.....+...+.++.+.. .....+. .-++...+..+.-+..+-++..|+++++..++ ......+ ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 445665557777777665542 1111111 11344555666555446788888888877774 2211111 1356777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhhhcCCCCCCChhhhH
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 241 (528)
|.++....+.++......+|+..+.-+|++... .+..+.|.++.+.. .+.++.+...+-.++-.++.. .........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence 777777788899999999999999888875443 34445566555543 445676666666677777654 223334557
Q ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCC
Q 009700 242 PALAALQHLIFSSD----EEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 242 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~ 315 (528)
.++|.++..+..++ .....-++-.|..+.++.+ ...+.++.. ++|.+.++.-+ ++......+-.||..+...+
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 88999999998775 5556666666666665533 233444443 77888887654 56667788888888887766
Q ss_pred cchhHHHhccCC------hHHHHHHhcccCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCcHHHHH-HHHccCChH
Q 009700 316 DTQTQCVIDNQG------LPRLYQLLTQNYKKSIKKEACWTISNIT----AGSRSQIQAVIEANIIAPLV-YLLQHAEFE 384 (528)
Q Consensus 316 ~~~~~~~~~~~~------l~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~ 384 (528)
.++...-.+.+. +..+-++| +++.-..++..+|.+. .+-+......++. ++...+ ++-......
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLL----dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLL----DPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHc----CCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 554433222222 23334444 3333344444444443 2222222222221 233333 333344677
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 385 VKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+-.....+++++...........+.
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL~ 791 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFLS 791 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 7788888888887754333334433
No 148
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.35 E-value=0.011 Score=49.41 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=103.6
Q ss_pred HHHHHHhCcHHHHHHHhcCCC------hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHH
Q 009700 277 IQAVIEAGVCPRLVELLLHSS------TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACW 349 (528)
Q Consensus 277 ~~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~ 349 (528)
...++..+++..|++++.++. ..+...++.++..+..+.. .....++..++..+...+.... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 356777889999999998755 3677788888888887643 2334566678888888887664 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFL 408 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 408 (528)
.|-++...++...+.+-+.=-++.|+..|+..+.+++.+|...+..+...+++...+.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999887777666665655699999999999999999999999999888776665543
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.33 E-value=0.0023 Score=66.69 Aligned_cols=187 Identities=19% Similarity=0.165 Sum_probs=131.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH-------------HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSC-------------RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
..++.+|+. +++-..++.++.-+..|++.. |+.+. ..++|.+++.+ ...+...+.+-..+|++
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 445555554 455556777777776665533 23322 23577788877 45566677777888888
Q ss_pred hcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC---hhhHHH
Q 009700 228 FCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS---TTVLVP 303 (528)
Q Consensus 228 l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~ 303 (528)
+..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++. ++|.++.+=.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHH
Confidence 877655432 23457889999999999999999999999988776655444443443 7787877766655 568999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
|+.+++.+.+..+...-......++..|.+.|.++ ...||++|..+=.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 99999999986655443445557888999999988 88899999876444
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.32 E-value=0.0075 Score=57.81 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH-----HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC-----RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
.+...+.+..|+..|..-+-+.+..+..+++++....... .+.+..+ .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4555688899999998888999999999999998554322 3333332 123333334344567777778888888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcCCChhhHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a 304 (528)
.++..+-.........+-.+...+..++=++..+|..++..+..........++.. .++.....+|.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77764333333334555567778888899999999999998877666555555554 367788889999999999999
Q ss_pred HHHHhHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 305 LRTVGNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 305 l~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+..||.+...... ...++-+..-+..++.+|.+. +..+|-+|..+.--+.+
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 9999999865433 234555667788999999998 99999999999988877
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.30 E-value=0.065 Score=51.51 Aligned_cols=203 Identities=12% Similarity=0.099 Sum_probs=142.3
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch-----hHHHhcc--CChHHHHHHhcccCchhHHHHHHHH
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ-----TQCVIDN--QGLPRLYQLLTQNYKKSIKKEACWT 350 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~ 350 (528)
+.+...+++..|+..|..-+.+.+..+..+++++....... .+.+... .++..|+.-.. ++++--.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 45666789999999999999999999999999998654322 2233321 23333333332 55666666666
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--CChHHHHhhcCCCChHH
Q 009700 351 ISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--GCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 351 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~ll~~~~~~~ 428 (528)
|..++. .+...+.++....+-.+.+.+..++.++...|..++..+......-...++..+ .++..+..+|.+++.-+
T Consensus 147 lRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 666654 566677888888999999999999999999999999998775433333444332 46778888999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
+.+++..|..++....... -....+.+..-+..+..|..+++..|+-.|..+..-|
T Consensus 226 krqslkLL~ellldr~n~~--------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFN--------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHH--------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHH--------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 9999999999997654322 2345566666678888889999999998888877644
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.25 E-value=0.016 Score=50.64 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCC-hHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGA-LMPLLAQ 208 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~Ll~l 208 (528)
+.++..++.+++.++...+...+ ..+|.+...|.++++.+|.+|+.+|..+...+. +.-.|. +..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999885544333 357899999999999999999999999975432 111233 3677788
Q ss_pred hccchhhHHHHHHHHHhhhhcCC
Q 009700 209 LNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 209 l~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 8 888999999999999999877
No 153
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.21 E-value=0.055 Score=54.63 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=144.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 009700 82 LSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASGTSEHTRVVIEH 157 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 157 (528)
...++.+..+|+++|.|++-.. ....+.+.+.|..+.++..|+... +.++.+-..++|.-++..+++.+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567889999999999999874 445667778999999999998761 37899999999999998888888777764
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc--------c
Q 009700 158 -GAVPKFVQLLGS-----------------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN--------E 211 (528)
Q Consensus 158 -g~i~~L~~lL~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~--------~ 211 (528)
+++..+...|.. .+......++.++.|+..+.+.... -.....++.++..+. .
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777775531 1345677788899999866554322 012223444444432 1
Q ss_pred chhhHHHHHHHHHhhhhcCCCC------------CCChhhhHHHHHHHHHHhc----CC----CHHHHHHHHHHHHhhcc
Q 009700 212 HSKLSMLRNATWTLSNFCRGKP------------PAPFDQVRPALAALQHLIF----SS----DEEVLTDACWALSYLSD 271 (528)
Q Consensus 212 ~~~~~~~~~a~~~L~~l~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~ 271 (528)
.+......++..+|.|+--... ..........+..|+.+|. .. -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 2234567777777777721110 0000111233444444443 22 24677788888888887
Q ss_pred CChHHHHHHHHhC-----------------cHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 272 GTNDKIQAVIEAG-----------------VCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 272 ~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
..... ...+... +-.+|+.++.+..+.++..+...+..+|..+
T Consensus 280 ~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 75433 3333332 3445666666665666666666666665433
No 154
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.21 E-value=0.57 Score=52.41 Aligned_cols=397 Identities=10% Similarity=0.042 Sum_probs=197.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..++..+..+-..+|-.|+++|..+......--....++.|+. .-+.++. ..|+..|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence 56677777777789999999999999876321112333333333 2334444 799999999999888766665554
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+ ..+..-+.++...+|..++.++..+|...|.+-...- +...++... .+....++..++.++.++-..++
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p~ 963 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTPV 963 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccCC
Confidence 44 3344445567789999999999999998887543311 233334434 34444589999999999887762
Q ss_pred CC--ChhhhHHHHHHHHHH-------hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcC------
Q 009700 234 PA--PFDQVRPALAALQHL-------IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLH------ 295 (528)
Q Consensus 234 ~~--~~~~~~~~l~~L~~l-------l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~------ 295 (528)
.. .......-++..+.. .....+.+....+..-... ......+.+..+ ..+..+.+++..
T Consensus 964 ~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~--~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~ 1041 (1692)
T KOG1020|consen 964 PEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK--TMKESVKPVALAKVTHVLNLLTHCLVEKISEVE 1041 (1692)
T ss_pred CcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh--hhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhh
Confidence 22 222222222221111 1112222222222211111 001111111111 122222222211
Q ss_pred -------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc---CCHHH
Q 009700 296 -------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA---GSRSQ 361 (528)
Q Consensus 296 -------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~ 361 (528)
.+.....+.+.+|..++...+. ++....+..|.+.|.+.. ...+-.+.+.++-...- ..++.
T Consensus 1042 ~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ses 1117 (1692)
T KOG1020|consen 1042 SDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSES 1117 (1692)
T ss_pred hHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 1222344556666666655443 222234445556665431 22333333333333221 11111
Q ss_pred HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC--CCHHHHHHHHHC--CChHHHHhhcCCC----ChHHHHHHH
Q 009700 362 IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG--GTREQIQFLVSQ--GCIKPLCDLLVCP----DPRIVTVCL 433 (528)
Q Consensus 362 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~--~~l~~L~~ll~~~----~~~~~~~~l 433 (528)
++ ..+=..|+.++-........+|..+++.++.. .+......+... +.++.+-.-.+.+ ........+
T Consensus 1118 ---fL-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsi 1193 (1692)
T KOG1020|consen 1118 ---FL-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSI 1193 (1692)
T ss_pred ---HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Confidence 11 12334555555555556666777777777663 222222222210 1122211111111 112333456
Q ss_pred HHHHHHHHhhhhchhccCCcc-hhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 434 EGLENILKIGEADKEAGSTTA-NVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 434 ~~l~~i~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+++-+.+++........... ..+...+ ..+.+..|..++.+.+.+++.+|..-+..++..
T Consensus 1194 ftlG~l~Ryfdf~~~~~~g~~~~~~~~~~-~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1194 FTLGLLSRYFDFPKPSNDGKTFLQEGETL-KEKVLILLMYFSKDKDGELRRKALINLGFICIQ 1255 (1692)
T ss_pred HHHHHHHHhccCCCccCCCccchhhhhhH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 667666665443321111000 0112222 345566777777777888888888888766553
No 155
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.15 E-value=0.026 Score=49.32 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 255 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 255 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
|+.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..+....--.. ...++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 577899999999999987664444 267899999999999999999999999987543211 12234677888
Q ss_pred hcccCchhHHHHHHHHHHHHhcC
Q 009700 335 LTQNYKKSIKKEACWTISNITAG 357 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~ 357 (528)
+.++ ++.|+..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
No 156
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.15 E-value=0.041 Score=52.54 Aligned_cols=192 Identities=21% Similarity=0.213 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc--CChh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS--GTSE 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~--~~~~ 149 (528)
+...+..+.......|..|+..+.+++... ...+.+. ...+++.+...++.+. .+-+..|+.+++-++- |...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence 677788888778999999999999998763 2222222 2346788888888877 5666777776666654 2233
Q ss_pred hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhh---CCChhHHHHHHhcCChHHHHH--hhc---------cch
Q 009700 150 HTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVA---GDSPSCRDLVLSHGALMPLLA--QLN---------EHS 213 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~Ll~--ll~---------~~~ 213 (528)
....+++ .+.|.|...+.. ..+.+|..|+.+|+-++ ...+.......+ .+..+.. ... ..+
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCC
Confidence 3444443 467888888876 34677778887777765 232222111111 2221111 111 112
Q ss_pred hhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 214 KLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 214 ~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
+..+...|+.+.+-|...-|... .......+|.|..+|.++|.+|+..|..+|.-+..
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35677777766666655433322 23457789999999999999999999988887654
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.13 E-value=0.0021 Score=49.41 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC
Q 009700 218 LRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS 297 (528)
Q Consensus 218 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 297 (528)
+..++++|...+..-+.........++|.++..+.++|..|+..||.+|.+++....+.+-..+. .+++.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~-~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN-EIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc
Confidence 34566677766665544445566889999999999999999999999999999765433322222 48888999999999
Q ss_pred hhhHHHH
Q 009700 298 TTVLVPA 304 (528)
Q Consensus 298 ~~v~~~a 304 (528)
+.|+..|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9888766
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.13 E-value=0.086 Score=53.67 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 249 (528)
.+...+..|+..|.....+-|...+. ++..++.++ .+.+..++..|...|..+|.+.+ ..+..+..+|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 56889999999999999999987766 678899999 78899999999999999998753 456788899999
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc---CCChhhHHHHHHHHhHh
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---HSSTTVLVPALRTVGNI 311 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~~l 311 (528)
+|.++++.....+-++|..+...++.. .+..+...+. ..++.+++.++..|..-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 999998877777777777776554422 2333333333 46777899988877543
No 159
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.075 Score=47.86 Aligned_cols=226 Identities=18% Similarity=0.240 Sum_probs=140.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..+.+....+........+..|.+.- ....+|.|+..|.+.+ .+.++.+|..+|+++.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 444444444443334444555554332 2446899999887644 47899999999999874 2
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH----HH---H-----HhcCChHHHHHhhccchhhHH-HH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR----DL---V-----LSHGALMPLLAQLNEHSKLSM-LR 219 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~---~-----~~~g~i~~Ll~ll~~~~~~~~-~~ 219 (528)
..++.+-++.+.+-..+++.|..++..+--.+..-. .. + ...+-+..+-..|.+...+.+ +.
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 356777788877888899988888887631110000 00 0 011113333333323222222 33
Q ss_pred HHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CC
Q 009700 220 NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SS 297 (528)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~ 297 (528)
.+.+.|.|+-. ...+..+..-+..+..-.+..+..+++.|-... .++.|.+.|.. .+
T Consensus 175 ~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~ 233 (289)
T KOG0567|consen 175 RAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEH 233 (289)
T ss_pred hhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcc
Confidence 45555555533 245666777777777778889999998876432 46677777755 56
Q ss_pred hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 298 TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 298 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
+-+|..|+.+||.++.. ..++.|.+.+.++ ++-|++.+..++..+-
T Consensus 234 pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~-~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 234 PMVRHEAAEALGAIADE-----------DCVEVLKEYLGDE-ERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 78999999999987752 2355788888887 7878888777776653
No 160
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0057 Score=65.59 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=125.6
Q ss_pred cCcHHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC
Q 009700 114 AGVVPRFVEFLDRH---DLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~ 189 (528)
+.+.|.++..++.+ .+|++|..|.-+|+.+..-+.+.+.. .+|.|+..+. ++++.+|.+++-+++.++..-
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 34678888888542 24999999999999999877666544 4699999998 699999999999999999776
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYL 269 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 269 (528)
|..-+. .-+.|...| .+.+..+++.|..+|++|... ....+.|.++-+..++.+++++|..-|=..+..|
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 653332 456677777 888999999999999999865 3456689999999999999999988877777777
Q ss_pred ccCChHHHHHHHHhCcHHHHHHHhcCC
Q 009700 270 SDGTNDKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
+...+... +++|-++.-|.+.
T Consensus 1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccchh------hhchHHHHhhccC
Confidence 76543222 2566666666654
No 161
>PRK14707 hypothetical protein; Provisional
Probab=97.01 E-value=0.97 Score=52.43 Aligned_cols=401 Identities=18% Similarity=0.133 Sum_probs=215.1
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 74 IPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 74 l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+..+++.+.. ++..-+..+ ..|...+... ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa-~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVA-PRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHH-HHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence 5556666552 344444443 3443344332 23333333344444444444556656666655544444544 44443
Q ss_pred HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+- ...+-..++.|+. ++......++.+|..=..+.+..++.+-..+ +.-.++-|.+-++..+-+.+...|..=..
T Consensus 242 ~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 3333 3345555666655 5554555555555443345555555543333 44556666677777776666666554333
Q ss_pred CCCCCChhhhH-HHHHHHHHHhcCCCHHHHHHHHHHHH-hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVR-PALAALQHLIFSSDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
+++........ ++-..|..+-+-+|..+...+..+|. .++. +++..+.+-..|+-..|-.+-+-++......+...|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA-DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc-CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 34433333332 33333334444566666666666655 4444 343433333333333333344456666777777777
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
..-..+..+..+ -++...+..++.-|+.=++..++..++..|.--..++.+..+.+--.++...|-.+-+-+|..+...
T Consensus 399 A~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 666666666554 4455555555665554337778888877777766777777766655555555555556677778777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH-HHHHHhhhhchhccCCcchhhHHHhhhcccH
Q 009700 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL-ENILKIGEADKEAGSTTANVYSEMIDECDGL 467 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l-~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 467 (528)
|+..|..=... +++.++.|--.++...|-.+-+.+|......++..| ..+. ... .....|...+..
T Consensus 478 aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~-----------~l~~~~~~~~~~ 544 (2710)
T PRK14707 478 TASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DEL-----------QLRKAFDAHQVV 544 (2710)
T ss_pred HHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cch-----------hhhhhhhhHHHH
Confidence 77777655443 345555555556666666666777765433333222 2222 111 123333344445
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 468 DKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 468 ~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..+..|..+++......+..-|...+-
T Consensus 545 ~~lnalSKwp~s~~C~~A~~~iA~~l~ 571 (2710)
T PRK14707 545 NTLKALSKWPDKQLCAVAASGLAERLA 571 (2710)
T ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence 666777777777777777666666554
No 162
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.037 Score=57.39 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=148.7
Q ss_pred hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHh
Q 009700 190 PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD-EEVLTDACWALSY 268 (528)
Q Consensus 190 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~ 268 (528)
..-+...+..|+...|+++. ....+..+.....+|. +.- + .........++.+.+.+++.. -.-...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~~i-~-f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--GKI-D-FPGERSYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--hhc-C-CCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 33455677788899999988 5555566666677776 111 1 111122344555555554332 1223457788889
Q ss_pred hccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc-CChHHHHHHhcccCchhHHHHH
Q 009700 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN-QGLPRLYQLLTQNYKKSIKKEA 347 (528)
Q Consensus 269 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a 347 (528)
|+..+....+.++....++.+-.++...++..+..++..+.||.-+..-....+.+. ..++.....+... +.....++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence 988777777778888777888888888999999999999999998776666666663 3455555555554 67777777
Q ss_pred HHHHHHHhcCCHHHHH-HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 009700 348 CWTISNITAGSRSQIQ-AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420 (528)
Q Consensus 348 ~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 420 (528)
+.++..|+.-...++. ..-.......+..++.+++..++......+.|+.. ...+....+.+...+..+...
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence 7777767664444443 22234567788889999999999999999999444 445556665555555544443
No 163
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.95 E-value=0.047 Score=49.46 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHH-hCcHHHHHHHh-------cCCC--h---hhHHHHHHHHhHhhcCCcchhHH
Q 009700 255 DEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELL-------LHSS--T---TVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 255 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~lL-------~~~~--~---~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
+++.++.|+.-|+.--+..++..-.+-. .|.+..|++=+ ..++ . .-...|+..+-.++.+ ++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 5566777766666554443322222211 25555444332 2221 1 2233455556666664 444557
Q ss_pred HhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 322 VIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
++++.+.-.|..+|+... -..+|-.++.+++.+.. ++++.+..+.+.+++|..++.|+.++.-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889999888899987552 24578888999999986 6788888899999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 397 TSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 397 ~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
... .....|+... .++..++ .+.+.+++.+.+.++.+..++.+..
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 873 4444444321 1233333 2345678888888888887776543
No 164
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.94 E-value=0.0052 Score=47.21 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=57.2
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
++...+++|+|++..+......+.+.|+++.+++...-. .+|-+|+.|.|+|.|++.++++..+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456789999999999988888899999999999887533 27999999999999999999887765543
No 165
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.90 E-value=0.064 Score=51.26 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh--hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--ChHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD--QVRPALAALQHLIFSSDEEVLTDACWALSYLSDG--TNDKIQ 278 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~ 278 (528)
...+..+ .+.....+..++..+.++........+. ....+++.+.+.++.+..+-+..|+.++.-++-. ......
T Consensus 46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344444 4445778888888888887665332222 2356677888888877666666677766666543 223344
Q ss_pred HHHHhCcHHHHHHHhcCCC--hhhHHHHHHHHhHhhcC---CcchhHHHhccCChH--HHHHHhccc---------Cchh
Q 009700 279 AVIEAGVCPRLVELLLHSS--TTVLVPALRTVGNIVTG---DDTQTQCVIDNQGLP--RLYQLLTQN---------YKKS 342 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~--~L~~lL~~~---------~~~~ 342 (528)
.+++. +.+.|...+.+.. ..++..++.+|+-++.. ........++ .+. +....++.. .++.
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence 55554 7788888887754 45566777788777542 2222221111 233 112222221 1245
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 343 IKKEACWTISNITAGS-RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+...|+.+-+-|...- ...+...++ ..+|.|..+|.+.+.+||..|..+|.-+..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777765555555432 323433333 469999999999999999999999887755
No 166
>PRK14707 hypothetical protein; Provisional
Probab=96.84 E-value=1.5 Score=51.03 Aligned_cols=357 Identities=15% Similarity=0.118 Sum_probs=207.0
Q ss_pred HHHHHHhhc-CCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHH
Q 009700 117 VPRFVEFLD-RHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 117 i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+..|++-++ .+++.+.+..+......++. .+..+..+ ....|..+++-++. +++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 444555553 34446777776666666666 33444333 33456666666665 4455555544444445544 4455
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHh-hhhcCCCCCCChhhh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTL-SNFCRGKPPAPFDQV-RPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
..+-..| +...++.|.+-++...-.++...| ..+..+ +.....+. ..+-..|..+-+-.+..+...+...|..=..
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 5544443 566667776777665544444444 445543 22222222 2333334444456677777776666654333
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
++++..+.+-..++-..|-.+-+-++..+...|..+|..-....+...+ -++...+..++.-|+.=++..+...|+..|
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~L 398 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASAL 398 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 3443333322223333333333446666666666666665555555543 334445555666665433666777777777
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHH
Q 009700 352 SNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTV 431 (528)
Q Consensus 352 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~ 431 (528)
..=..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--... +.+.++-|--.++...|-.+-+.+|..+...
T Consensus 399 A~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 399 AEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred HHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 665567787777776666666666666677888888888888766654 4666666666666777777778899888777
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
+.+.|..=+....+ ++..|.-.+....|..|...++...+..|..-|..
T Consensus 478 aa~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~ 526 (2710)
T PRK14707 478 TASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAE 526 (2710)
T ss_pred HHHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 77766555544332 34444445556778888888887776665444443
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.078 Score=55.10 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=154.7
Q ss_pred CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALG-NVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
.....+...++.|+...|+.+.....+.-+-....+|. .+...+.. ....++++.+.+..+....-....+.+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 34555666788899999999988877777777777777 33222111 123566666666333322334567788
Q ss_pred hhhhcCCCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHH
Q 009700 225 LSNFCRGKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLV 302 (528)
Q Consensus 225 L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~ 302 (528)
+.||+..+....... -...++.+-.++..+++..+..++..+.||.-.+.-....+.+. ..++....++.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 889887763332222 24445556666777889999999999999998766555555553 3455555555555566666
Q ss_pred HHHHHHhHhhcCCcchhH-HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 303 PALRTVGNIVTGDDTQTQ-CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
.++.++..|+........ ..-.......+..++.++ +..++......+.|+.....+....+++...++.+...-.-.
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~ 724 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN 724 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 677777666554443332 233345778888899998 999999999999997766666666666766777666544333
Q ss_pred ChHHHHHHHHHH
Q 009700 382 EFEVKKEASWAI 393 (528)
Q Consensus 382 ~~~v~~~a~~aL 393 (528)
....+..+..+|
T Consensus 725 ~a~~~~~~~~~l 736 (748)
T KOG4151|consen 725 RAPKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhhHH
Confidence 333444444443
No 168
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.058 Score=58.29 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhc----CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhc
Q 009700 239 QVRPALAALQHLIF----SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 239 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~ 313 (528)
.+..+.|.++...+ .+|++++..|.-+|+.+..-+.+ +++. -++.|+..+. ++++.++.++.-++|.++-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces-~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH-HHHHHHHHHhcCCCceeeecchheccchhh
Confidence 44567788888774 45799999999999998876543 3333 5788999887 7899999999999999987
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+...+ .+-+.|...|.+. ++.+|+.|..++++|...+.-. -.|.++.+..++.+++..++.-|-..+
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7665443 3445788888888 9999999999999998643222 258999999999999999999998777
Q ss_pred HHhcCCCC
Q 009700 394 SNATSGGT 401 (528)
Q Consensus 394 ~nl~~~~~ 401 (528)
..+...++
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 77776654
No 169
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.71 E-value=0.25 Score=47.26 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=108.2
Q ss_pred CcHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhH
Q 009700 115 GVVPRFV-EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SPSC 192 (528)
Q Consensus 115 g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~ 192 (528)
+++..|+ ..+++.+ +.+|..|+.||+-.+--+.+.... .++.+...+..+++.++..|+.++..+... +...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 6677877 899999999999999865544333 357778888778999999999999998732 2111
Q ss_pred HHHH-------HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC----CCHHHHHH
Q 009700 193 RDLV-------LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS----SDEEVLTD 261 (528)
Q Consensus 193 ~~~~-------~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~ 261 (528)
-+.. .....+..+...+ .+.+++++..++..++.|.-...... ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1123455566666 55588899999999999876652222 23344444333222 24556555
Q ss_pred HHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC
Q 009700 262 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 262 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 296 (528)
....+-..+..+..+. ..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 5555666666655553 444445777777766553
No 170
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.70 E-value=0.0048 Score=48.71 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=58.7
Q ss_pred CChHHHHhhc-CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 412 GCIKPLCDLL-VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLE 490 (528)
Q Consensus 412 ~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~ 490 (528)
.++..|+.+| .+.|+.++.+++.=|..+++..+.+ ...+++.|+.+.+..|+.|+|++|+..|...+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-----------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-----------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-----------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-----------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3578888888 4568888999999999999988764 456789999999999999999999999998887
Q ss_pred Hhc
Q 009700 491 RYW 493 (528)
Q Consensus 491 ~~~ 493 (528)
++.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 171
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.69 E-value=0.9 Score=46.41 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..+..|+..++..+...+-.++..+ ...--+++.....++.|..+...|..++.+......... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence 4567777777777665433333332 222245565555578899999999888885443111111 112222
Q ss_pred hCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch--------------------------hhHHHH
Q 009700 167 LGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS--------------------------KLSMLR 219 (528)
Q Consensus 167 L~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--------------------------~~~~~~ 219 (528)
+.. ..++....-+.+|..++.++.+. ...+.++.+.|...+...- +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 232 34444455666677777665544 2245566777777662111 112222
Q ss_pred HHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhc
Q 009700 220 NATWTLSNFCRGK-PPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 220 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
..+..+.++...+ .......+.+++..++.+. ++.++.....++..+-.+... +++... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 3333333333333 1122223333333333332 122222223333333222211 111111 1223333332
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-----YKKSIKKEACWTISNITAGSRSQIQAVIE-A 368 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~ 368 (528)
........+-.++.||+...-.+. .+..|..+|.++ .+..+.+-|...+..+..+.......-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 222567778888888886443322 345677777322 14556678888888887654222211121 2
Q ss_pred --CcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 369 --NIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 369 --~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
-++|.|...++.+++.+-.++...+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278889999998888888888888888874
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.04 Score=57.49 Aligned_cols=226 Identities=13% Similarity=0.124 Sum_probs=145.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+.+.+..+.++.+.++-.|+..++.++.. ......+...+++....+.|++.+ +-+-..|+..+..++.-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-----
Confidence 3466777777777788999999999999875 345556667889999999999988 88889999988888763
Q ss_pred HHHHhcCChHHHHHh-hCC---CCHHHHHHHHHHHHHhhCC-ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 152 RVVIEHGAVPKFVQL-LGS---ASDDVREQAVWALGNVAGD-SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 152 ~~i~~~g~i~~L~~l-L~~---~~~~i~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
....++|.+... .+. ..++.+-.+-.++.+++.. ++-+..... -.+..++... .+++...+..++..++
T Consensus 799 ---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gv-repd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 799 ---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGV-REPDHEFRASSLANLG 872 (982)
T ss_pred ---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhc-CCchHHHHHhHHHHHH
Confidence 334577888874 333 2245555556777777632 221111111 2455666667 5778888999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcC-CChhhH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLH-SSTTVL 301 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-~~~~v~ 301 (528)
++|......-......++..++.+...+ ..-++..|...+..+..+.....-.+... +....+.+.... ++..++
T Consensus 873 ~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~k 952 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLK 952 (982)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 9997653333335566666677776654 46788888888888876544322222211 223334444433 344455
Q ss_pred HHHHHHHhHh
Q 009700 302 VPALRTVGNI 311 (528)
Q Consensus 302 ~~al~~L~~l 311 (528)
..|+.++-.+
T Consensus 953 lhaql~leei 962 (982)
T KOG4653|consen 953 LHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHH
Confidence 6665555433
No 173
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.12 Score=53.12 Aligned_cols=278 Identities=17% Similarity=0.127 Sum_probs=154.6
Q ss_pred cCcHHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 114 AGVVPRFVEFLDRH-------DLPQLQFEAAWALTNIAS--GTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
.|+++.++..|... +++.-.+.|++.+.++.+ .-+.....+.+.-+++.++..++++.--++..++..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 68899999999421 123445667777777765 333344445555567777778888888899999999999
Q ss_pred hhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh----HHHHHHHHHHhcCCCHHHHH
Q 009700 185 VAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV----RPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 185 l~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~d~~v~~ 260 (528)
+..+ +++..+-..+.+...+++ ++.+-.++-.|+.++..+..+. ...... .+.++.|+.+-+.-+.++..
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 9544 333333334566677788 5577788888899998888775 112222 33333444443444555555
Q ss_pred HHHHHHH-hhccCChHHHHHHHHhCcHH----HHHHHhcCCC------hhhHHHHHHHHhHhh---cCCcchhH--HHhc
Q 009700 261 DACWALS-YLSDGTNDKIQAVIEAGVCP----RLVELLLHSS------TTVLVPALRTVGNIV---TGDDTQTQ--CVID 324 (528)
Q Consensus 261 ~a~~~l~-~l~~~~~~~~~~~~~~~~l~----~L~~lL~~~~------~~v~~~al~~L~~l~---~~~~~~~~--~~~~ 324 (528)
.+...+. +.+..-......+.. .++. ....++..++ ..-+..|.++|..+. -.-+.... .-+.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le 639 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE 639 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5444332 333221111111111 1223 2233333321 122334444444332 22221111 1123
Q ss_pred cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh-HHHHHHHHHHHHhcCCCC
Q 009700 325 NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF-EVKKEASWAISNATSGGT 401 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~nl~~~~~ 401 (528)
....|.+--+|.+. -.++-.+|+..+-+.+-...+ +.. +.-|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus 640 ~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 640 VSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 34566666666666 777888888888776532221 111 123456666666666653 667888999999987663
No 174
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.65 E-value=0.043 Score=55.81 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=109.0
Q ss_pred CcHHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 009700 115 GVVPRFVEFLDRH---DLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 115 g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~ 190 (528)
..-|...+...+. +++++|..|.-+|..+..-+.+.+.. -+|.|+..+. +++|.+|..|+-.++.++..-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 3455555655541 24999999999999988766555543 4699999887 6999999999999998874433
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
...+. .-..|.+.| .+.+..+++.|+.++..|.-.. ...+.|-++.+..+|.++|.++..-|-..+..++
T Consensus 967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 22222 346677778 7888999999999999987543 2445788999999999999998887777777777
Q ss_pred cCCh
Q 009700 271 DGTN 274 (528)
Q Consensus 271 ~~~~ 274 (528)
..+.
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 6654
No 175
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.65 E-value=0.094 Score=43.90 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred HHHHHHhcCChHHHHHhhccchh-----hHHHHHHHHHhhhhcCCCCCCChhhh-HHHHHHHHHHhcCC--CHHHHHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLNEHSK-----LSMLRNATWTLSNFCRGKPPAPFDQV-RPALAALQHLIFSS--DEEVLTDAC 263 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--d~~v~~~a~ 263 (528)
+...++..+++..|++++.++.. .+....++.++..|..+. ...+... ..++..++..+... |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 34566778899999999965442 478888999999988874 2233332 55666666666543 689999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..|-+++.+++...+.+.+.=-++.|+..|+..++.++..|+..+..+....++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999998887677776666789999999999999999999888888765544
No 176
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.14 Score=51.13 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=95.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH--hhccCChHHHHHHHHhCcHHHHHHH-hcCCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 246 ALQHLIFSSDEEVLTDACWALS--YLSDGTNDKIQAVIEAGVCPRLVEL-LLHSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 246 ~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
.+..++.+.|+-++.....+++ +...++ .+++..+++. .++.+..++..|..+||-+|....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 5556677777777766665544 222222 2567777777 677888999999999998886543
Q ss_pred hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 323 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
..+...+++|..++++.||...+.+|+-.|+++.... .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 3455677888777689999999999998888655433 345555667778888999999999988876654
Q ss_pred H
Q 009700 403 E 403 (528)
Q Consensus 403 ~ 403 (528)
+
T Consensus 655 ~ 655 (926)
T COG5116 655 E 655 (926)
T ss_pred c
Confidence 4
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.078 Score=55.41 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=134.5
Q ss_pred cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 211 EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 211 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
.++...++.+++..|..+.+...........+++......+.+.|+-+--.|+..+..||+-.++ .+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44556688899999999998765555666789999999999999999999999988888876543 3566666
Q ss_pred HH-hcC---CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 291 EL-LLH---SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 291 ~l-L~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.. ... .....+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|....-.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 322 11233333335555555433332211111 3455677777777 888899999999999863332222222
Q ss_pred HcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHH--HHCCChHHHHhhcCCCC-hHHHHHHHHHHHHHHH
Q 009700 367 EANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFL--VSQGCIKPLCDLLVCPD-PRIVTVCLEGLENILK 441 (528)
Q Consensus 367 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~ll~~~~-~~~~~~~l~~l~~i~~ 441 (528)
..++..++.+.. ++.+.+|+.|+..+..+..+...+....+ .-.+....+..+....+ ..+...+..++..+-.
T Consensus 887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 124444454444 45789999999999999886554433322 12234444444444433 3344444444444433
No 178
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.59 E-value=0.14 Score=45.55 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCCh
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAV 160 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i 160 (528)
+.-...|+..|..+++. .+....+.+..+=-.|..+|...+ ..-++..++.+++.+.. ++.+....+...+++
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 34556777777777776 566667777664444455554322 35689999999999998 455666677889999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-------CChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSH-------GALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-------g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
|..++.++.+++..+..|..++..|..++....-.+... -.+..++..+.+.++.-+..++..+..+|+.+
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987765432222111 12333343444666777888888888888866
No 179
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.28 Score=50.62 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=106.5
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
.+-+++.+.++-+|.....+++---.++.. .+++..|+.. .++. +.+||+.|.-+|+-++..+++++
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~---- 590 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQL---- 590 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhc----
Confidence 344556666776776665555432222211 2345566666 4455 89999999999999988777754
Q ss_pred HcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 367 EANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 367 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|..+.+|. +.++.||.-|+.||+-.+.+..... ++..|-.+......-++..++-++..|+.....
T Consensus 591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 45555565 4589999999999998887643221 244444555556666788888888877765433
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
. .+|-... +...+..+....+++.-.+--.++.+
T Consensus 658 ~-------~~pkv~~-----frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 658 Q-------LCPKVNG-----FRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred c-------cCchHHH-----HHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 2 2222323 34667777777777776665555554
No 180
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.58 E-value=0.0041 Score=49.11 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=61.2
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..++.+|.+++++||.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3577899999554488899999999999999888888777788999999999999999999999999987754
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.55 E-value=0.42 Score=51.06 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=119.3
Q ss_pred HHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH--HHHHHHhcCCCH-H
Q 009700 181 ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL--AALQHLIFSSDE-E 257 (528)
Q Consensus 181 ~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~d~-~ 257 (528)
+|+++....+.....+++.|++..+..++......++...++..+.+++...+..........+ ..+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 5667888888888889999999999999976778889999999999999775333222222222 233334444444 6
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHH-HHHHhc
Q 009700 258 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPR-LYQLLT 336 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~-L~~lL~ 336 (528)
....++..++.+....++....... +.+...-..++..+.... .....+ ..+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~---~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSE---IRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccc---eeehhh-hhcchhHHHHhc
Confidence 6666777777666554321111111 111222222222222211 111222 22223 566666
Q ss_pred ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHH
Q 009700 337 QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAIS 394 (528)
Q Consensus 337 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~ 394 (528)
.+..+..+..|.|++.+++..+++..+.+.+.|+++.+...-... ..+++.++...+.
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 555788999999999999998888887788889998887654332 4455555555443
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.49 E-value=0.024 Score=40.66 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
.|.|.|+++++++ ++..+..+-+.++++.++++.... ...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5789999999976 677777777789999999998754 68999999999999888 567766665544
No 183
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.79 Score=45.28 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred HHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChh
Q 009700 221 ATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTT 299 (528)
Q Consensus 221 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~ 299 (528)
-...++.+...............+..+..-..+++..++..|++.|++.+...++........ .+..++.-|. ..+.+
T Consensus 237 d~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~ 315 (533)
T KOG2032|consen 237 DIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEE 315 (533)
T ss_pred HHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccH
Confidence 334444454443222233445555555555667788999999999999999866554444333 4555555444 45678
Q ss_pred hHHHHHHHHhHhhcCCc--chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--C--CHHHHHHHHHcCcHHH
Q 009700 300 VLVPALRTVGNIVTGDD--TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--G--SRSQIQAVIEANIIAP 373 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~--~~~~~~~l~~~~~i~~ 373 (528)
|...++.+|..+..... .....++ .+.-.+..+..+. ++++|..|..+++.++. + .....-.-+..+..|.
T Consensus 316 V~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 316 VQLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred HHHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 88889888887765322 1111222 3455677888888 99999999999998875 2 1222211233344444
Q ss_pred HHHHHccCChHHHHHHHHHHHHhc
Q 009700 374 LVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
++ .+.++++.+- .||.+....+
T Consensus 393 ll-hl~d~~p~va-~ACr~~~~~c 414 (533)
T KOG2032|consen 393 LL-HLQDPNPYVA-RACRSELRTC 414 (533)
T ss_pred ee-eeCCCChHHH-HHHHHHHHhc
Confidence 43 3555555543 3444444433
No 184
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.33 E-value=0.24 Score=50.92 Aligned_cols=193 Identities=12% Similarity=0.155 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch
Q 009700 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 318 (528)
....++|.|++++...|..++...+.-+-..... .....++..+++.+...+.+.++.++..++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4467899999999999999988766655554443 2345566779999999999999999999999999998643322
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc-HHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANI-IAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.++...+..+..+-.+. +..+|-...-+++-++....... ..++ +..+.+.+.++-...|..+.+++....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 23333444554444444 78899888888888876432222 2333 345556677777888888888887665
Q ss_pred CCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 398 SGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 398 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
..-+... +...+++.++.+.-+++..++..+..++...+...++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5322111 24457888888888888889999998888888776654
No 185
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.30 E-value=0.94 Score=48.75 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=119.0
Q ss_pred HhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 155 IEHGAVPKFVQLLGS-----ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
.+.|++..++.++.+ .........+..|...|. -+.+|+.+++.|+++.|+..+..- + .
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~---------l------~ 177 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRA---------L------Q 177 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHH---------H------h
Confidence 346889999988876 234555666666665554 467899999999999998887310 0 0
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc---cCChHHHHHHHHhCcHHHHHHHhc----CCChhhHH
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVELLL----HSSTTVLV 302 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~ 302 (528)
...+........+++.++-.++...+..-.....+. .... ....+ -+..|+..+. ..++.+..
T Consensus 178 ~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~-~~~~~~~~~~~~---------~v~~lL~~l~s~~~r~~~~i~~ 247 (802)
T PF13764_consen 178 ANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSS-SSLSGSEEQDKE---------QVEMLLERLNSPFVRSNPQILQ 247 (802)
T ss_pred CccccccchHHHHHHHHHHHHHHHHhhhhhhhcccc-ccccccccccHH---------HHHHHHHHhcCccccCCHHHHH
Confidence 000111112223333333333322111100000000 0000 11222 2333444443 35688899
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-c---hhHHHHHHHHHHHHhcC------CHHHHHHHHHcCcHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-K---KSIKKEACWTISNITAG------SRSQIQAVIEANIIA 372 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~---~~v~~~a~~~L~nl~~~------~~~~~~~l~~~~~i~ 372 (528)
..+++|..++.+.+...+.+++ .+.+.++-.. + ..--...+.+++.++.+ .....+.+++.|++.
T Consensus 248 ~l~RiLP~Lt~G~~e~m~~Lv~-----~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~ 322 (802)
T PF13764_consen 248 ALARILPFLTYGNEEKMDALVE-----HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQ 322 (802)
T ss_pred HHHHHhhHHhcCCHHHHHHHHH-----HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHH
Confidence 9999999999999887777665 2233221110 1 00011224444555432 235567777999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV 422 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~ 422 (528)
..++.|...-|.. ....+++...+ +....++.++.+|.
T Consensus 323 ~a~~YL~~~~P~~-----------~~~~s~eWk~~-l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 323 DAIDYLLKHFPSL-----------KNTDSPEWKEF-LSRPSLPYILRLLR 360 (802)
T ss_pred HHHHHHHHhCccc-----------ccCCCHHHHHH-hcCCcHHHHHHHHH
Confidence 9998887765554 11134555444 45566666666663
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.25 E-value=0.27 Score=48.05 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=114.5
Q ss_pred HHHHHHHHH-HHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 172 DDVREQAVW-ALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 172 ~~i~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
.+-+..|+. +..-+|.++-...+.... .++..++..|.++.+...+..|+..|..+|+..+..-+....-++..++..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344555555 344444444433333222 245667777856578889999999999999997766555556667777777
Q ss_pred hcCCCHHHHHHHHHH-HHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChH
Q 009700 251 IFSSDEEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLP 329 (528)
Q Consensus 251 l~~~d~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 329 (528)
-.+.++++...|... +..++...+.. .+..+..++...+......++..+..++..-....-..+=..+.|
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 666666665555544 33444444422 344555566567777777888888888865443221222247899
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 330 RLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 330 ~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.+++...+. +..||+.|.++|..+..
T Consensus 452 ~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 452 CVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 999999998 99999999999988753
No 187
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.14 E-value=0.29 Score=43.67 Aligned_cols=142 Identities=11% Similarity=0.169 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN----YKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAP 373 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~ 373 (528)
.-...|+..+..++++.+. ...++++.+--.+..+|... ....+|-.++.+|+.+.. ++.+.+..+...+++|.
T Consensus 94 nRVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3345667667666665554 44677777766677777543 145689999999999986 67777888889999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChH-HHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 374 LVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIK-PLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~-~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++.+..++...|.-|...+..+.... ....|+... -.+. .+..+.+.+++.+...++.+..++....
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999988742 233333221 1222 3334556688888888888887776543
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.14 E-value=0.039 Score=52.73 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=83.4
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH-
Q 009700 331 LYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV- 409 (528)
Q Consensus 331 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~- 409 (528)
+.+.+.+. ++.+|+.|..++|-++--+.+... ..++.+...+..++..++..|+.++..+....+.+......
T Consensus 32 I~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 32 ILPAVQSS-DPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 34777888 899999999999998875553332 24677888887789999999999999987643333322222
Q ss_pred ------HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 410 ------SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 410 ------~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
...+++.+...+.+.+++++..+.+++.+++-.+.-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 245788899999999999999999999999986643
No 189
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.11 E-value=0.38 Score=43.98 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
.....|+.+|--++--++..+..+.+...+..++.+|.. ..+.++..++.+|..+..++|.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345667788888888899999999999999999999954 6789999999999999999999988999999999999999
Q ss_pred ccc-hhhHHHHHHHHHhhhhcCC
Q 009700 210 NEH-SKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 210 ~~~-~~~~~~~~a~~~L~~l~~~ 231 (528)
+.. .+.+++-.++..|.-+...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 533 3677877777777655544
No 190
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.10 E-value=0.043 Score=57.72 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH--------HHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR--------VVIE----HGAVPKFVQLLGSASDDVREQAVWALGN 184 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~i~~----~g~i~~L~~lL~~~~~~i~~~a~~~L~n 184 (528)
-..|+.+|+.+ ++-..++.++.-+..+++.... .+.+ ..++|.|++.........+..-+.+|.+
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 45566666653 3445556666666654432211 1222 4588999998887667788888889999
Q ss_pred hhCCChhHHHHHHh--cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHH
Q 009700 185 VAGDSPSCRDLVLS--HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVL 259 (528)
Q Consensus 185 l~~~~~~~~~~~~~--~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~ 259 (528)
+...-|. +.+.. ...+|.|++.| .-+|..++..+..++.-+....+.........++|.++.+-.++| ..++
T Consensus 894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 8887764 22222 12355566666 778899999999999988877666666777889999998877665 6789
Q ss_pred HHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 260 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 260 ~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
..|+.++.-|.+. +..... -....++..|.+.|.++..-+|..|.++=++.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999983 333333 23335889999999999999999998875544
No 191
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.09 E-value=0.077 Score=48.12 Aligned_cols=143 Identities=11% Similarity=0.129 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|..+++. ++....++++.+.-.|..+|+..+ ...++..++.+++.+.. ++++....+.+..++|.
T Consensus 66 RVcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 66 RVCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 445667777777775 677888889887777777776544 24688999999999998 45677778888999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHH-------HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLV-------LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~-------~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++.++.++.-.+..|..++..|-.+.....-.+ .-..++..++..+...+++-+.++..++...|+.++
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999998899999999998876654322111 111235555555557778889999999999999873
No 192
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=2.3 Score=44.39 Aligned_cols=300 Identities=15% Similarity=0.119 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhHHHHHHhcCChH
Q 009700 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--------ASDDVREQAVWALGNVAG--DSPSCRDLVLSHGALM 203 (528)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~i~~~a~~~L~nl~~--~~~~~~~~~~~~g~i~ 203 (528)
..|+.++..+.+..++.+ + .|+++.+...|.. .++.-.+.|++.++++.. ..+.....+.+.-+++
T Consensus 388 laal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 388 LAALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 345556665555333321 2 4889999998832 235566788888888764 2222223334444566
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA 283 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 283 (528)
.++..+ +++..-++..+|.+++.+..+ -+.......+.+....++.+++-.++..|+-|+..+..+.. .+..+..
T Consensus 464 hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sa 538 (970)
T COG5656 464 HVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSA 538 (970)
T ss_pred HhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHh
Confidence 666666 666777889999999999554 33444556778888888988888888888888887776542 2233333
Q ss_pred C---cHHHHHHHhcCCChhhHHHHHHH-HhHhhcCCcchhHHHhc---cCChHHHHHHhcccCc-----hhHHHHHHHHH
Q 009700 284 G---VCPRLVELLLHSSTTVLVPALRT-VGNIVTGDDTQTQCVID---NQGLPRLYQLLTQNYK-----KSIKKEACWTI 351 (528)
Q Consensus 284 ~---~l~~L~~lL~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~-----~~v~~~a~~~L 351 (528)
. .++.|+.+-+.-+-.+...++.. ++..+..-......+.. ..++.....++..+.+ .+=+..|...|
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL 618 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL 618 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 2 33344444333333333333322 22222111111111111 1233344444433311 12234444555
Q ss_pred HHHhc------CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 352 SNITA------GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 352 ~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
..+.. ..+...+.+ .....|..-=++.+.-.+.-.+|+..+-+.+... .+ +.. +.=|+.+.+.+++....
T Consensus 619 ~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-ke-I~p-imwgi~Ell~~~l~~~~ 694 (970)
T COG5656 619 RTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS-KE-IEP-IMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HH-hhh-hhhHHHHHHHhcccccc
Confidence 54432 334433333 2335555555566777788888888887765521 11 111 12256777778887766
Q ss_pred h-HHHHHHHHHHHHHHHhhhhc
Q 009700 426 P-RIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 426 ~-~~~~~~l~~l~~i~~~~~~~ 446 (528)
. .-.+.+..++.+++..|...
T Consensus 695 t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCccc
Confidence 4 66677888999999888543
No 193
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.99 E-value=0.072 Score=47.00 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=79.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC--------CChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH--------DLPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--------~~~~v~~~a~~~L~~l~ 144 (528)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+++|..- .+..++.+++.||..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456777787655432 5566666666653222367888889999999888631 23578999999999999
Q ss_pred cCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009700 145 SGTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVA 186 (528)
Q Consensus 145 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~ 186 (528)
. +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5565666665 689999999999999999999999999887
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.98 E-value=0.05 Score=46.27 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHHHHhc--CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 286 CPRLVELLL--HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 286 l~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+..++..|. ...+.++..++-++..+.. ... .-...-+-+.+...+... +.+-...++.+++.+..+.++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555554 3567788888888888842 111 122223344566666666 667788899999999888888888
Q ss_pred HHH-HcCcHHHHHHHHc--cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChH-HHHHHHHHHHH
Q 009700 364 AVI-EANIIAPLVYLLQ--HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPR-IVTVCLEGLEN 438 (528)
Q Consensus 364 ~l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~-~~~~~l~~l~~ 438 (528)
.++ ..|+++.+..++. ..+..++..++.+|..-+. +...+.. +...+++.|..+++. ++.. ++..++-+|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 887 7899999999999 7788999999999987776 3344444 445679999999964 4454 55555555543
No 195
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=1.1 Score=46.28 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..+.+.+-.+++...+++..|+..+|..|..+.+...+. ...+-.++...+..-+.+..+.+|..|+.+|+.+=....+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 366777888888888999999999999999998754322 3333345778888888999999999999999998742221
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
- +..+...+..+++..++++||+.|+..|.+
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1 123566788888877799999987655543
No 196
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=1.5 Score=43.34 Aligned_cols=268 Identities=14% Similarity=0.095 Sum_probs=138.2
Q ss_pred cCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 157 HGAVPKFVQLL----GSASDDVREQAVWALGNVAGDSPS-CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 157 ~g~i~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.|.+..++..+ .+++..++..|+..|+|.+...|. ++.. ..-.+..++.-|.++.+.++.-.++.+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 35555444443 347789999999999999988553 3222 1224666777776777888998888888877755
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHH-HHHh--CcHHHHHHHhcCCChhhHHHHHHH
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQA-VIEA--GVCPRLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~-~~~~--~~l~~L~~lL~~~~~~v~~~al~~ 307 (528)
...... ....++.-.+..+..+.+++.+..+...++.|+.......+. +.+. +-...++-.+.++++.+. .||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence 322111 122334445667788899999999988888776432211111 1110 122334444555666543 45555
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHHH-HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIKK-EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
....+.-+-. .+.+. ++ +-+.+ .. +. ..+. ..-|+ ..+....++....+..+ ...++++.-+.+
T Consensus 410 ~~~~c~p~l~-rke~~--~~---~q~~l-d~-~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t~-----~~~~f~sswe~v 475 (533)
T KOG2032|consen 410 ELRTCYPNLV-RKELY--HL---FQESL-DT-DMARFQAFYNQWC-IQLNHIHPDILMLLLTE-----DQHIFSSSWEQV 475 (533)
T ss_pred HHHhcCchhH-HHHHH--HH---Hhhhh-HH-hHHHHHHHHHHHH-HHHhhhCHHHHHHHHHh-----chhheecchHHH
Confidence 5444432211 11110 11 11112 11 11 1111 11121 11222233333222221 122233333455
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
+..|...-.+....-.+..+.+.--.-+...+-.+...+-+++...+..++..+..
T Consensus 476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55555444555444344444443223345566666777888888888888877654
No 197
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.95 E-value=0.66 Score=45.48 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH-hhcCCcch
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN-IVTGDDTQ 318 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~-l~~~~~~~ 318 (528)
..++..++..|.. .+..++.-|++.|..++.+.+.....-.+. .+..+++.-.+..+.+...|...... +++..+.+
T Consensus 328 ~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 328 AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 4566677777776 678889999999999998866443222222 45556666666666555555544333 34433332
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
. +..+..++... +...-..+...+..++.. ..+....++ .++.|.+++...+.+..||+.|.++|..+.
T Consensus 407 ~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 C--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred H--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2 22344444444 554555555566666653 333333333 469999999999999999999999998886
Q ss_pred C
Q 009700 398 S 398 (528)
Q Consensus 398 ~ 398 (528)
.
T Consensus 477 ~ 477 (516)
T KOG2956|consen 477 N 477 (516)
T ss_pred H
Confidence 5
No 198
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.92 E-value=0.13 Score=57.07 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=114.8
Q ss_pred HHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh
Q 009700 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST 298 (528)
Q Consensus 219 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 298 (528)
..+.|+...++...+. .....+++..++..+..+...++..|+.||+.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 3455555555544221 1223566777888888888999999999999999876632 2233444556666777888
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
.||..|+..+|..+...++.... ..+.+..-+.++ ...||+.+...+..+|...|..-. +.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence 99999999999988777664433 344677777777 889999999999999986665431 111 233333334
Q ss_pred ccCChHHHHHHHHHHHHhcCC
Q 009700 379 QHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~~~ 399 (528)
.+.+..|++-++.++.++...
T Consensus 941 ~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhcc
Confidence 455566999999999988753
No 199
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.82 E-value=0.014 Score=34.14 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.2
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
++|.+++++.+++++||..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 200
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.65 E-value=0.21 Score=45.68 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL 167 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 167 (528)
....|+..|.-++--. ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+.+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 4556778888777663 444556667889999999996555589999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHhhCC
Q 009700 168 GS--ASDDVREQAVWALGNVAGD 188 (528)
Q Consensus 168 ~~--~~~~i~~~a~~~L~nl~~~ 188 (528)
++ .+.+++-.++..|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 87 4577888888877776543
No 201
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.63 E-value=1.1 Score=46.38 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=75.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+.-+++...+++..+++..+..|+.+... ...++..+-.++...+..-+.+.. |.++.+|+.+|+.+-....+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence 356667777788999999999999988763 455666666777777777777777 899999999999998522111
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHH
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWAL 182 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L 182 (528)
+..++..+..+++. +++++|..|+..+
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12356777888876 7899999865433
No 202
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.60 E-value=0.019 Score=33.56 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=25.8
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 4799999999998 9999999999999875
No 203
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.56 E-value=0.46 Score=49.02 Aligned_cols=258 Identities=12% Similarity=0.098 Sum_probs=165.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
-.+++.+...+.+.+..-...|.+.+.. --+.++...++|.|+..+..++...-....+.-++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e----- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE----- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence 3455556666666666655555553332 2345566778888888887655122222233333333331 22
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
++.+++|.|++++.+.+..+|-.-+.-+-+.... ..+.+++..+++.+...+ .+.+..++...+.++..|+.--..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5567899999999999999998777666666543 233556667788888888 788999999999988888754211
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhC-cHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
. ......+..+.++-.+++..++....-+++.++....... ..+ ....+..-++++-..-+..++..+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2234555666665555667888888888888876633221 222 33445555677666778888777776555
Q ss_pred CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..+. .-+...+++.+..+.-++ +..+|..|..++...-.
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4433 223446888888888888 88888888877776643
No 204
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=5 Score=45.52 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=94.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+++|.|..-|.+.+..+|..|...+|.+......+.. --........+.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 5888898889999999999999999999876654332 00113344455555566 889999999999998876666443
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
... +...+. ..+.|++++.....++..+.. ..-...+ ... ++..+.+-+....+.|+..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~--~~~~D~~~rir~~v~i~~~~v--~~~~l~~-~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALR--ERDLDEDVRVRTQVVIVACDV--MKFKLVY-IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHH--hhcCChhhhheeeEEEEEeeh--hHhhhhh-hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 222222 233344444433322222211 1111222 222 677777788888999999999999888874
No 205
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.17 Score=50.57 Aligned_cols=152 Identities=22% Similarity=0.349 Sum_probs=105.0
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC
Q 009700 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL-LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHG 200 (528)
Q Consensus 122 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g 200 (528)
+++.+.+ +-++...+..++.--.++.. .|++..|+.. .+..+.++|..|+.+|+-+|.+.+.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 67777776666544333322 3577777776 6668899999999999999977664
Q ss_pred ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHH
Q 009700 201 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAV 280 (528)
Q Consensus 201 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 280 (528)
.+...+++|.++.+..++...+.+|.-.|.+... ..++..|-.++.....-|+..|+-+++-+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4666778886777889999999999998887522 3456677777888888899999999887764433222221
Q ss_pred HHhCcHHHHHHHhcCCC
Q 009700 281 IEAGVCPRLVELLLHSS 297 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~~~ 297 (528)
+. ++...+.+.+.+..
T Consensus 660 v~-~I~k~f~~vI~~Kh 675 (926)
T COG5116 660 VK-RIIKKFNRVIVDKH 675 (926)
T ss_pred HH-HHHHHHHHHHhhhh
Confidence 11 36666777665543
No 206
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.34 E-value=0.17 Score=43.16 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=87.5
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+++.|.++|+.+.+..++.+++++++.|..-+|...+.+... .+.-. -............... ++....++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~ee--- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSSEE--- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCchHH---
Confidence 3578889999887668999999999999998777655533221 11000 0111122222222111 11111222
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.....++..|+..|++..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 82 -~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 -YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885444444445666666666644434446777899999999999777777777776666553
No 207
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.32 E-value=2.1 Score=39.99 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=134.8
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----HHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----CRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLS 226 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~ 226 (528)
..+.++|.++.++..+..-.-+-+..++.+..|+-...-. ..+.+.. -...+-.++.... .+++.-.+...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 3566789999999999888888888888888888633222 2222221 1222333332222 3566666666666
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCc----HHHHHHHhcCCChhhHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLLHSSTTVLV 302 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~ 302 (528)
...++..-......+..+......++.+.=++..+|..++..+.......+..++.... .+.--.++.+.+.-++.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 66655433333333555666666667777788889999888887665545555544432 33356678889999999
Q ss_pred HHHHHHhHhhcCCc---chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 303 PALRTVGNIVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 303 ~al~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.++..+|.+.-+.+ ..++++....-+..++.+|..+ +..++-+|.....-..+
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 99999999975543 3445555567788999999998 89999999888877766
No 208
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.30 E-value=1.5 Score=40.77 Aligned_cols=204 Identities=10% Similarity=0.049 Sum_probs=138.4
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh---hh---HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD---QV---RPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
..+...|.+..++..+ ..-+-+.+..++.+..++-+..-..... .. ..++..|+.--.. -+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3456778888899988 6777888889999999888765322211 11 2344444443111 2444333333333
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCC----hHHHHHHhcccCchhH
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQG----LPRLYQLLTQNYKKSI 343 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v 343 (528)
... ........+..+.-+..+...+..+.-.+...|..+...+.+........++..+. .+..-.++.++ +.-.
T Consensus 151 Eci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 333 23334455666677888888888888899999999999988766655444544332 44466778888 9999
Q ss_pred HHHHHHHHHHHhcC--CH-HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 344 KKEACWTISNITAG--SR-SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 344 ~~~a~~~L~nl~~~--~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
++.+..+++.+.-+ +. ...+++....-+..++.+|..+...+|-+|.....-+..+.+
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999998753 33 333444445678899999999999999999999988887543
No 209
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=3.6 Score=43.30 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=135.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhH-HH
Q 009700 119 RFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE--HGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSC-RD 194 (528)
Q Consensus 119 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~-~~ 194 (528)
.++++|++.++.-++..++..+.-...+-.-..+.+.. ......+.+++.. +.-+.+...+..|+.+.....+. +.
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P 609 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAP 609 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555543555666666666555532222222211 1233344445544 44566777777777776433221 11
Q ss_pred HHHhcCChHHHHHhhc-cc-hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHHHHHHHHHHhh
Q 009700 195 LVLSHGALMPLLAQLN-EH-SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVLTDACWALSYL 269 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~-~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~l~~l 269 (528)
... .+-.++..+- .+ ..+-++...+.+|.++...-.........-++|++-....-+. .-..+++...-...
T Consensus 610 ~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~ 686 (978)
T KOG1993|consen 610 YAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTT 686 (978)
T ss_pred HHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHH
Confidence 111 1222333332 22 2344566667788888765433333333444444443333222 22444443322222
Q ss_pred ccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHH
Q 009700 270 SDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACW 349 (528)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 349 (528)
..+.+.....+. +++|.+...+...... ...++.++....--.....-.-...|++..+..++.+- ..+-....+.
T Consensus 687 L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLk 762 (978)
T KOG1993|consen 687 LMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLK 762 (978)
T ss_pred HhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 222222222222 3677777777654433 33344444433321111111122346777777777665 4455556667
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCC
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~ 401 (528)
++..+...++ ........+++|.+...+-.+ .|-+-..-..+++.+....+
T Consensus 763 iveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~ 815 (978)
T KOG1993|consen 763 IVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNP 815 (978)
T ss_pred HHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcCh
Confidence 7777665444 455556678888887665333 46666677777777766543
No 210
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.27 E-value=0.16 Score=43.13 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=96.6
Q ss_pred ChHHHHHHhcc-cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH
Q 009700 327 GLPRLYQLLTQ-NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI 405 (528)
Q Consensus 327 ~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~ 405 (528)
-++.++..|.. ...+.+|..+.-+++.+.. ...+. ...-+-+.+-..+..++.+-...+..++..+... .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 34556666654 3378899999999988852 22211 2222334444555555666778889999988885 56666
Q ss_pred HHHH-HCCChHHHHhhcC--CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHH-
Q 009700 406 QFLV-SQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNE- 480 (528)
Q Consensus 406 ~~l~-~~~~l~~L~~ll~--~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~- 480 (528)
..+. ..|+++.+..+.. +++..+...++++|..-+.... +..+....|++-|+.+. +++++.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-------------~r~~I~~~~~~~L~~~~~~~~~~~~ 145 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-------------CRTFISKNYVSWLKELYKNSKDDSE 145 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-------------HHHCCHHHCHHHHHHHTTTCC-HH-
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-------------HHHHHHHHHHHHHHHHHccccchHH
Confidence 6655 7799999999998 7888888888888765443322 33333566688888887 677676
Q ss_pred HHHHHHHHHH
Q 009700 481 IYEKAVKLLE 490 (528)
Q Consensus 481 v~~~a~~ii~ 490 (528)
++.+|.-.+-
T Consensus 146 ir~~A~v~L~ 155 (157)
T PF11701_consen 146 IRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7888776654
No 211
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.19 E-value=5.7 Score=42.88 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
.+|.+++-|.......+|....-+++.+|.+... ++ ...+|.+-..|.++++-||+.+...|.++...+--.+.-
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~-d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G 1043 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MT-DRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNG 1043 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HH-HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcch
Confidence 3455555554443445555555555555543222 22 246888888889999999999999999988743111111
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
. =++.++..+++ .+++++.-+-.++..++...+
T Consensus 1044 ~----Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1044 E----LFIRFMLALLD-ANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred h----hHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcC
Confidence 1 12444444444 466777777777777776543
No 212
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.18 E-value=0.4 Score=49.20 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 332 (528)
+|++++..|.-+|..+..-+.+. +. .-+|.++..+. +++|.+|.+|.-.+|.++.......+.. -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 68899999888888776544322 22 25788888887 7999999999999998876554433322 33677
Q ss_pred HHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCC
Q 009700 333 QLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQG 412 (528)
Q Consensus 333 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~ 412 (528)
.-|.+. +..||+.+..++.++.-...-. -.|-.+.+..+|.+++..+...|-..+..++...+. +-+|
T Consensus 978 rrL~De-~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098 978 RRLGDE-DADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence 778887 9999999999999986432211 247789999999999999999999999999885432 2345
Q ss_pred ChHHHHhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009700 413 CIKPLCDLLVC---PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 413 ~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++.+..+-.+ ++.+ -..++..|..++...
T Consensus 1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence 56555554422 2222 234555666666544
No 213
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.16 E-value=0.56 Score=50.44 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
+.+..-+.+++..-|..++..+..++.... -....-..|.+..++.....+.+..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445556778888888888888876544 1111112334555666666778888999999999988877654455556
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT- 319 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~- 319 (528)
...+|.++..+......++..+..++-.++.... -..+.+.+...+++.++.++..+...+.......+...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888899988888777777666666655444221 11367888899999999999999888888876655211
Q ss_pred HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 320 QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 320 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..-.-.+.++.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1111125677777888777 89999999999988875
No 214
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.11 E-value=1.1 Score=48.35 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=131.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+-..+.+.+...+.+|+..+...++..+ -.......|.+-.+......+.+..+...|+.+|..|+..........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 345556668899999999999999988642 111111245566666655544447888999999999998544432222
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP- 233 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~- 233 (528)
..+..|.++.-+......+++.+..++-.++...+. ....+.++..+ .+.++.++..+...+....+...
T Consensus 334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 236789999999888888999888888777653331 12456667777 78888888776666655554432
Q ss_pred -CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 234 -PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 234 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.........++|.++....+.+.+|+..+..+++-+...
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 233445688899999999999999999999998877543
No 215
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.08 E-value=2.4 Score=41.77 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=103.9
Q ss_pred HHHHHHHHhHhhc---CCcchhHHHhc-cCChHHHHHHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 009700 301 LVPALRTVGNIVT---GDDTQTQCVID-NQGLPRLYQLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 301 ~~~al~~L~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 374 (528)
....++++..+.. +.......+++ ..++..|..++.+.. .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3445566666665 33344556777 677778888887763 46788889999999988888888888899999999
Q ss_pred HHHHc-cC---ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh-------HHHHHHHHHHHHHHHhh
Q 009700 375 VYLLQ-HA---EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKIG 443 (528)
Q Consensus 375 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-------~~~~~~l~~l~~i~~~~ 443 (528)
++.+. .+ ..++-...-.+|+.++. +....+.+.+.+.++.+++++.+++- ++....=.++..+++..
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99988 43 45666666677777777 57888999999999999999876432 23333344556666665
Q ss_pred hhch
Q 009700 444 EADK 447 (528)
Q Consensus 444 ~~~~ 447 (528)
+..+
T Consensus 235 p~Lk 238 (379)
T PF06025_consen 235 PSLK 238 (379)
T ss_pred HHHH
Confidence 5543
No 216
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.06 E-value=0.11 Score=37.28 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcC
Q 009700 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHG 200 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g 200 (528)
...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence 4679999999998 66677777778999999998875 778999999999999986544 445544443
No 217
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.99 E-value=2.2 Score=41.90 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=60.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHH-HHHhhCCChhHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWA-LGNVAGDSPSCRD 194 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~-L~nl~~~~~~~~~ 194 (528)
+..+++-|.+.....+|..++--|+.-+. +++.+..+...|.+..+++.+.. ++..+...++.+ +.-++.+.+ .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 45556666644446889888888888887 89999999999999999999955 333244444344 444444443 333
Q ss_pred HHHhcCChHHHHHhhc
Q 009700 195 LVLSHGALMPLLAQLN 210 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~ 210 (528)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3344455555566663
No 218
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.99 E-value=1.3 Score=43.56 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=126.2
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh-hhcCCCCCCCh
Q 009700 160 VPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS-NFCRGKPPAPF 237 (528)
Q Consensus 160 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~ 237 (528)
+..++.-|.+ .+..+|..++--|+.-|.+ +.+|..+..+|....+++.+...++..+...++.++. -++++.+....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 5568899998888888875 4589999999999999999955554434444444444 44444443333
Q ss_pred hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc---------CCChhhHHHHHHH
Q 009700 238 DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HSSTTVLVPALRT 307 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~al~~ 307 (528)
.........+..++... ...+..... . ..........+ ..+..+...+. +....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33455666667777611 000000000 0 00001111111 12222222221 1233445667777
Q ss_pred HhHhhcC--------------CcchhHHHhccCChHHHHHHhcc----cC------c-----hhHHHHHHHHHHHHhcCC
Q 009700 308 VGNIVTG--------------DDTQTQCVIDNQGLPRLYQLLTQ----NY------K-----KSIKKEACWTISNITAGS 358 (528)
Q Consensus 308 L~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~ 358 (528)
+-.++.. .+...+.+...|+++.++.++.. .. . ...-..++++|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 7666411 11223445566788899888852 10 0 123345677777777655
Q ss_pred HHHHHHHHH--cCcHHHHHHH----HccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 359 RSQIQAVIE--ANIIAPLVYL----LQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 359 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
.+...+++. .+.++.+... ....-..+...++..+.|++.+. +..+..+.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~ 309 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFA 309 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhh
Confidence 544444443 3333333332 22223455678888899998864 34444443
No 219
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.98 E-value=3.6 Score=44.14 Aligned_cols=198 Identities=18% Similarity=0.203 Sum_probs=115.7
Q ss_pred HHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhcccCchh
Q 009700 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLTQNYKKS 342 (528)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~ 342 (528)
++.++....++.-..+++.+++..+..++.. .+..+...++..+++++...+....... +.--...+..++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888888888999999999999999986 5677899999999999976543221111 1000123333444331335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhc
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP-LCDLL 421 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~ll 421 (528)
.-..|+..++.+...++... ..+.-+ .+...-..++....... +.. .....+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~----~~~~r~-----------~~~~~l~e~i~~~~~~~----~~~-~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT----ECVFRN-----------SVNELLVEAISRWLTSE----IRV-INDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc----cccchH-----------HHHHHHHHHhhccCccc----eee-hhhhhcchhHHHHh
Confidence 66667777777665433211 111111 11111122222222211 111 11112222 44444
Q ss_pred C-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q 009700 422 V-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 422 ~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~ 493 (528)
. +..+..+.++++++.+++...++ ++..+.+.|++..+..+. .+...++...+..+++...
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 3 34566777889999988876543 577888999999999885 3336667777777776543
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.96 E-value=1.8 Score=45.08 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCC
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~ 315 (528)
......++|.|...+++.+..+++.++..+..+++.-+ -.++..-++|++..+. .+.+..++..++-|++.++...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998887654 2334445788887763 4577889999999999998433
Q ss_pred cchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 316 DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
+.. .+++ .+..+..-.+.. ++.+......+..++....+.. ..++...++|.++-+...+...+.+
T Consensus 461 D~~--~v~d--~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 461 DKA--AVLD--ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHH--HhHH--HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHH
Confidence 221 1221 233444445555 8888887777777776533332 3445567899998887766544433
No 221
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.34 Score=44.90 Aligned_cols=146 Identities=20% Similarity=0.217 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.-.+...+..|.+.|++...+++..+..|+....+.....+.. ++-.++.-+++....+...|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888999999999999999998877666666654 778888888999999999999999999876655443
Q ss_pred HHhccCChHHHH-HHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 321 CVIDNQGLPRLY-QLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 321 ~~~~~~~l~~L~-~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.. ++.++ .+|.... +.=++..|-.+|..+..+-..+ .+++.|+..+.+..+.++..++.++.++.
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 23333 3343321 3347888888888887542222 25677888888899999999988887776
Q ss_pred CC
Q 009700 398 SG 399 (528)
Q Consensus 398 ~~ 399 (528)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 54
No 222
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=2.6 Score=43.63 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=118.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Ch----hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASG-TS----EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 190 (528)
.=|.|..-|+-.+ ..+|..|+..+.++--- ++ +..+.+++. -...|.++|.++.+.+|..|+.-++.+...
T Consensus 175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~-- 250 (1005)
T KOG1949|consen 175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK-- 250 (1005)
T ss_pred HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH--
Confidence 3456667777777 89999999999997652 22 344555543 256788899999999999999888887643
Q ss_pred hHHHHHHhc---CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 191 SCRDLVLSH---GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 191 ~~~~~~~~~---g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
+...+... ..+..+..-+..+...+++......|..+...+ ........++|.+-..|.++.+.|+..+...|.
T Consensus 251 -fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 251 -FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred -HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 22222111 122333333334455678888888888887663 233455677888888888888999999888887
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.+-....-..-.++ -.+.++..|..++..+....+..+-+.+
T Consensus 328 ~ik~vra~~f~~I~---~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 328 KIKAVRAAKFWKIC---PMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHhhhhhhhhccc---cHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77544322211122 2345666666666555555555555544
No 223
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.89 E-value=4 Score=41.43 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=80.7
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
...+.+.+..+++.+.+.|..|+..+|..|..+++.-. .+...+-.+++..|.+-+-+..+.++..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 45567788888888889999999999999998887544 33445556788899999999999999999999998864332
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
.-.. .+...+..+++..++.+||+.|..-|
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2111 12346777777766888998765443
No 224
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.86 E-value=1.2 Score=44.59 Aligned_cols=244 Identities=13% Similarity=0.103 Sum_probs=140.2
Q ss_pred hHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009700 108 IEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVA 186 (528)
Q Consensus 108 ~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~ 186 (528)
.+..++...+..|+.++.++| +.-|...-.+|.++-......+..+.. .+...+..++.. ....-...++.+++.+.
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 344566678899999999998 888998889999988755555555543 345666666654 34445566788888887
Q ss_pred CCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 009700 187 GDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWA 265 (528)
Q Consensus 187 ~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~ 265 (528)
.+-. ..++.-.. -....++.+.....-.........++..++..+|. ....++..+++.=-..+..-..-.+.-
T Consensus 204 ~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 204 NGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp TT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred hccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 5422 12221100 01233445553333344455666666666655432 223334444443333444444444455
Q ss_pred HHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc---CChHHHHHHhccc---
Q 009700 266 LSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN---QGLPRLYQLLTQN--- 338 (528)
Q Consensus 266 l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~--- 338 (528)
+..+... +++....+.. .++..+..++.+.+..|.+.|+..+.|= .... ++.. .+++.+...|...
T Consensus 279 l~~il~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~-li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNNE-----YFLS-LISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHH-HHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHH-HHHhChHHHHHHHHHHHHHHHHH
Confidence 5555543 2333333333 3788899999999999999998776532 2121 2221 3566677666431
Q ss_pred C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 339 Y-KKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 339 ~-~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
+ +..++..|+.++.-+..-++.....+
T Consensus 352 HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 1 57899999999999988777655443
No 225
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.69 E-value=4.5 Score=39.25 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=115.6
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCc-HHHHHHHHccC----C---------hHHHHHHHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE-ANI-IAPLVYLLQHA----E---------FEVKKEASW 391 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~~----~---------~~v~~~a~~ 391 (528)
+..+...|.+. ...+...++..+..++. ........++. -++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 67788888888 77788899999999988 66666666664 222 34444444321 1 289999999
Q ss_pred HHHHhcCCCCHHHHHHHH-HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 392 AISNATSGGTREQIQFLV-SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.+..+...+++.....++ ..+.+..+...+..++++++..+++.+..-+-..+...+. .-+..| ....+.+|
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~------~K~~~f-n~~~L~~l 209 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS------TKCKLF-NEWTLSQL 209 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh------hhhhhc-CHHHHHHH
Confidence 998888888887777766 4578999999999988999999999998644444333221 123333 44467888
Q ss_pred HHHhcCCCH----HHHHHHHHHHHHhcC
Q 009700 471 ENLQSHDNN----EIYEKAVKLLERYWV 494 (528)
Q Consensus 471 ~~L~~~~~~----~v~~~a~~ii~~~~~ 494 (528)
..|-...++ .+.+.+...+..+..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 888888878 999999999998876
No 226
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.68 E-value=5 Score=39.69 Aligned_cols=266 Identities=15% Similarity=0.062 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcC---ChHHHHHhhc-cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHG---ALMPLLAQLN-EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g---~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 246 (528)
+..+..+|+.+|+.+..+..- ...+.+.. ++...+..+. ...+..+....+|+|+.=--............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i-~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEI-VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHH-HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 678999999999998755432 22211111 2334444442 334567778888887753322211122222333444
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc---hh---
Q 009700 247 LQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT---QT--- 319 (528)
Q Consensus 247 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~--- 319 (528)
+..+-. -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+...-+. ..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 444333 456778888999999998876654333322 2677888877777777777766555554322111 11
Q ss_pred HHHhcc----C-----ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 320 QCVIDN----Q-----GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 320 ~~~~~~----~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
....+. + +.+.+..++.+. +...-.--.|...-+.-+++. ..-..+ ...+...-.++.++++.+|..|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence 111221 2 333466666663 333333334544443333321 111111 2244444456778899999999
Q ss_pred HHHHHHhcCC--CCHHHHHHHHHCCChHHHHhhcCCC-Ch----HHHHHHHHHHHHHHH
Q 009700 390 SWAISNATSG--GTREQIQFLVSQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILK 441 (528)
Q Consensus 390 ~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~----~~~~~~l~~l~~i~~ 441 (528)
..+-..++.. .+.........- +..++...++.. .. .+...++..+++++-
T Consensus 295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 7776666542 111111111111 234444445432 22 556667777777664
No 227
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.13 Score=47.42 Aligned_cols=147 Identities=12% Similarity=0.181 Sum_probs=99.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
.+...+..|.+.+|.....++..+..++....+.....+. .++-.+++-+++. ...|.+.||.+++.+.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999998776653333332 3455566667777 8889999999999998754444433
Q ss_pred HHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
..+ +.+-.|..--...+.-|+..|-.+|..++....+.. +++.|...+...++.++..+..++.+....
T Consensus 167 ~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 167 ELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 222 222222222223356789999999999998766543 466777778888888877766665554443
No 228
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.51 E-value=3.8 Score=37.53 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=115.6
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 160 VPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 160 i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
++.|+. +-+..+++.....+.+|..+|.....+... ++..+..+. +.++......+...+..+-...+. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r-~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKANDR-HF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCch-HH-
Confidence 344444 444578999999999999999776112222 234444444 444445444555555555544321 11
Q ss_pred hhHHHHHHHHHH--h------c--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHH
Q 009700 239 QVRPALAALQHL--I------F--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRT 307 (528)
Q Consensus 239 ~~~~~l~~L~~l--l------~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~ 307 (528)
+.+..++.. + . +...+.......++..+|...++. ...+++.+..+| .+.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 233322222 0 1 112445555566788888776652 224778888888 78888899999999
Q ss_pred HhHhhcCCcchhHHHhc-cCChHHHHHHhcccCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCcHHHHHHHHccCChH
Q 009700 308 VGNIVTGDDTQTQCVID-NQGLPRLYQLLTQNYKKSIKKEACWTISNITAG--SRSQIQAVIEANIIAPLVYLLQHAEFE 384 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~ 384 (528)
+..++... +++ ......+.+-|..+..+.+.+..|..+..+..+ +.+.. ......++..+.++..+.+.+
T Consensus 146 l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhccccccc
Confidence 99999422 221 123344555555554677777666666655442 22222 223445777777777766643
No 229
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.48 E-value=0.99 Score=45.15 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS----E 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~----~ 149 (528)
+..|+..+.|+|+..|......++.+... -......+...+...|.+++.......-....+++++.+..|.. +
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 67788888999999999888888888776 45566666667788888888765545667888899999988633 1
Q ss_pred hHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.-..+.. ..|+-+...+. .....+-..++..++..+|..... ++..+++.= ...+..-....+.-+..+
T Consensus 213 eh~~fl~----~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 213 EHKQFLR----KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp HHHHHHH----HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHH
Confidence 1222222 22333444432 344556666666666555543332 223333332 222222222333334444
Q ss_pred cCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC-----CChhh
Q 009700 229 CRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH-----SSTTV 300 (528)
Q Consensus 229 ~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~-----~~~~v 300 (528)
...-+... ......+...+..++.+.+-.|.+.|+..+.| +.....+.+. .+++.+...|.. -+..+
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44322222 22345677778888999999998888766543 1111111111 256666666543 35678
Q ss_pred HHHHHHHHhHhhcCCcc
Q 009700 301 LVPALRTVGNIVTGDDT 317 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~ 317 (528)
+..|..++..+...++.
T Consensus 358 r~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 88888888888776654
No 230
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.28 E-value=4.2 Score=37.20 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=116.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLV 196 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 196 (528)
+|.|+.-+....++..+...+..|..++......... ++..|..+...+....+..+.+.+..+....+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 5566664554445999999999999999844222222 34666666777777777777888888775554221
Q ss_pred HhcCChHHHHHhh---------ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 009700 197 LSHGALMPLLAQL---------NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWAL 266 (528)
Q Consensus 197 ~~~g~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l 266 (528)
+.+..++..+ ..+...+.......++..+|...|. .....++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444331 1122344555556788888888765 4466778888888 788888999999999
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcCCcc-hhHHHhccCChHHHHHHhccc
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTGDDT-QTQCVIDNQGLPRLYQLLTQN 338 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~ 338 (528)
..++... .++ +. .....+..-|..+ .+.+....+..++.+..+.-+ .........++..+.++..+.
T Consensus 147 ~~Lc~~~--vvd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAE--VVD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHh--hcc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9999432 111 11 1223333334332 344444444444433332211 111233345566666666555
No 231
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.16 E-value=5.9 Score=39.28 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCc--hhHHHHhcCcHHHHHHhhcCCC----ChH--HHHHHHHHHHHHhc
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCP--PIEEVIRAGVVPRFVEFLDRHD----LPQ--LQFEAAWALTNIAS 145 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~----~~~--v~~~a~~~L~~l~~ 145 (528)
...+...++..+.+.++.|+-...++....+-. +.+.+++.-+.+.+-++|.+.+ .|+ .+.-++.+|+-++.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 345566666777788999999999998875322 3455777777888888887643 233 34556667777777
Q ss_pred CChhhH--HHHHhcCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhH
Q 009700 146 GTSEHT--RVVIEHGAVPKFVQLLGS-ASD------DVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLS 216 (528)
Q Consensus 146 ~~~~~~--~~i~~~g~i~~L~~lL~~-~~~------~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~ 216 (528)
.++-. ..++ +.||.|+.++.. .++ .+.+.+-.+|..+++..+. ...++..|+++.+.+.-. .++-.
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~-~~~~~ 167 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYE-LPDGS 167 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHh-CCCCc
Confidence 33322 2233 468999998865 223 3788899999999988664 455677899999887652 22211
Q ss_pred HH-HHHHHHhhhhcCC-C-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-------HHHHHHHHhCcH
Q 009700 217 ML-RNATWTLSNFCRG-K-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-------DKIQAVIEAGVC 286 (528)
Q Consensus 217 ~~-~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~~l 286 (528)
.- .-++.++.-+... . -.........++..+..=+...+....-..|..|..+..... ...+...+ ...
T Consensus 168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~-~l~ 246 (698)
T KOG2611|consen 168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWAD-YLR 246 (698)
T ss_pred hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHH-HHH
Confidence 11 1111111111111 0 011111112233444443444566667777777774432221 11001111 122
Q ss_pred HHHHHHhcCC-ChhhHHHHHHHHhHhhc
Q 009700 287 PRLVELLLHS-STTVLVPALRTVGNIVT 313 (528)
Q Consensus 287 ~~L~~lL~~~-~~~v~~~al~~L~~l~~ 313 (528)
.-+..+|++. .+.-+.+|+....++.+
T Consensus 247 ~G~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 247 TGVVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHHHhcccCchhcChHHHHHHHHHH
Confidence 3344555542 34456667666666653
No 232
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.08 E-value=2.8 Score=42.16 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC----hhhHHHHHHHHhHhhcCCcch
Q 009700 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS----TTVLVPALRTVGNIVTGDDTQ 318 (528)
Q Consensus 243 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~ 318 (528)
....+...+.+++...+..+...+..++.+ ......++....+..|.+++.+.. ..+...++++++.+....-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 445567777777777777788888888765 446777888888999999998754 456677777777766443211
Q ss_pred hHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 319 TQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
- ..+...++.....+..-. .+..+-..|+..+-++..++....+.+.+.--+..|+..+...+..++..|...+..+.
T Consensus 163 W-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 W-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred e-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1 111222333333333221 15667788888888888887777777777778999999999999999999888888888
Q ss_pred CCCCHHHHHHHH
Q 009700 398 SGGTREQIQFLV 409 (528)
Q Consensus 398 ~~~~~~~~~~l~ 409 (528)
..++++.+..+.
T Consensus 242 ~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 242 RKAPDDKRFEMA 253 (713)
T ss_pred hhCChHHHHHHH
Confidence 777665554443
No 233
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.96 E-value=8.9 Score=41.60 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=127.0
Q ss_pred hcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC----CCC----HHHHHHHHH
Q 009700 113 RAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG----SAS----DDVREQAVW 180 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~i~~~a~~ 180 (528)
+.|++..++.++.+-. ..++-...+..|...+. -+.+++.+++.|+++.|+..|. ... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4677888888887532 13444555566666555 7899999999999999998774 333 678888887
Q ss_pred HHHHhhCCChh--HHH--H-HH-------hcCChHHHHHhhccc---hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHH
Q 009700 181 ALGNVAGDSPS--CRD--L-VL-------SHGALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALA 245 (528)
Q Consensus 181 ~L~nl~~~~~~--~~~--~-~~-------~~g~i~~Ll~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~ 245 (528)
++..+..+... ... . .. ....+..+++.+... .++.+....+.+|..|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777643221 000 0 00 111256666666422 357889999999999998864433333333333
Q ss_pred HHHHHhc-----CCCHHHHHHHHHHHHhhccC----C--hHHHHHHHHhCcHHHHHHHhcCCCh----------------
Q 009700 246 ALQHLIF-----SSDEEVLTDACWALSYLSDG----T--NDKIQAVIEAGVCPRLVELLLHSST---------------- 298 (528)
Q Consensus 246 ~L~~ll~-----~~d~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~l~~L~~lL~~~~~---------------- 298 (528)
.+ ++=. ..+..+. +.+++.++.+ . ....+.+++.|++...+..|...-+
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 32 2111 1122222 3344444332 2 3456778888999988888754221
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL 335 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 335 (528)
.-...+++.|.-++.+... ++..+..++++. +..|
T Consensus 350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~-lH~L 384 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPL-LHRL 384 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHH-HHHh
Confidence 1234478888888887654 334466666644 4444
No 234
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.89 E-value=4.6 Score=42.15 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=90.9
Q ss_pred hCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHH
Q 009700 283 AGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 283 ~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
..+++.|...+++.+..++..++..+..++..-+. ..+..-+++.+..+.....+..++..++-+++-++. ..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 35888888889999999999999999998876663 344556778887775544478899999999888862 22
Q ss_pred HHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC
Q 009700 363 QAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP 424 (528)
Q Consensus 363 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 424 (528)
+...-...++.+...+...++.+......+..++...... . ..+....+++.+..+...+
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-G-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-c-eeeehhhhhhhhhhhhhcc
Confidence 2221123456666777778899888887777777653221 1 2334456677776665543
No 235
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.79 E-value=7 Score=37.94 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhHhhc-CCcchhHHHhcc-C-ChHHHHHHhcccC----c--------hhHHHHHHHH
Q 009700 286 CPRLVELLLHSSTTVLVPALRTVGNIVT-GDDTQTQCVIDN-Q-GLPRLYQLLTQNY----K--------KSIKKEACWT 350 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~v~~~a~~~ 350 (528)
+..+...|......+..++++.|..++. ........++.. + -.+.+..++.... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888999888899999999999998 444555555442 1 2344555553220 1 2788888766
Q ss_pred HHHHh-cCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC---CHHHHHHHHHCCChHHHHhhcCCCC
Q 009700 351 ISNIT-AGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGG---TREQIQFLVSQGCIKPLCDLLVCPD 425 (528)
Q Consensus 351 L~nl~-~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L~~ll~~~~ 425 (528)
+..+. .+++.....++ +.+.+..+.+-|...++++....+.+|..-+... ++...-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55555 46777777777 5667888999998988999999999998544322 1223333445567888888888777
Q ss_pred h----HHHHHHHHHHHHHHHh
Q 009700 426 P----RIVTVCLEGLENILKI 442 (528)
Q Consensus 426 ~----~~~~~~l~~l~~i~~~ 442 (528)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7788888888877753
No 236
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.65 E-value=2.5 Score=41.76 Aligned_cols=129 Identities=13% Similarity=0.185 Sum_probs=94.5
Q ss_pred hhHHHHh-cCcHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC-C---CCHHHHHHHH
Q 009700 107 PIEEVIR-AGVVPRFVEFLDRHD--LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG-S---ASDDVREQAV 179 (528)
Q Consensus 107 ~~~~~~~-~g~i~~Lv~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~i~~~a~ 179 (528)
..+.+++ ..+...|...+.+.. -+.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++....-
T Consensus 97 ~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP 176 (379)
T PF06025_consen 97 RLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLP 176 (379)
T ss_pred ccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHH
Confidence 3455666 566777777777654 3688999999999999988999999999999999999887 4 6678888888
Q ss_pred HHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhh------HHHHHHHHHhhhhcCCCCCCC
Q 009700 180 WALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKL------SMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 180 ~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~ 236 (528)
.+|+.||-+.. ..+.+.+.+.++.+++.+.+.... +........+-.|.++.|...
T Consensus 177 ~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk 238 (379)
T PF06025_consen 177 NVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK 238 (379)
T ss_pred HHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence 89999997766 456777789999999988432211 233344444555666654433
No 237
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.57 E-value=6.9 Score=46.37 Aligned_cols=271 Identities=9% Similarity=0.066 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHhhCCC---hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDS---PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAA 246 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~---~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 246 (528)
++..++-.|+..|..++... ++....-....++.++...+....+.++++.++.++.++..........-...++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 45667777777777766321 111111122346777887776777889999999999988765432222222344444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHH-----HHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHhHhhcCC----c
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLLHS-STTVLVPALRTVGNIVTGD----D 316 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~~l~~~~----~ 316 (528)
+.......++.+...+..++..+....-..+ ..+. .++..+..+.... +..+-..|+..|++++..- -
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 4444455678888888888877764321100 0111 2344444444333 3556667777777552110 0
Q ss_pred -----------------------chhHH-----HhccCChHHHH---HHhcccCchhHHHHHHHHHHHHhcC-----CHH
Q 009700 317 -----------------------TQTQC-----VIDNQGLPRLY---QLLTQNYKKSIKKEACWTISNITAG-----SRS 360 (528)
Q Consensus 317 -----------------------~~~~~-----~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~ 360 (528)
..... .....+++.|. .+..+. +++||..|+.+|-.+... +++
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 00000 00112333333 334555 899999999999887741 333
Q ss_pred HHHHHHHcCcHHHHHHHHccC-----------------------ChHHHHHHHHHHHHhcCCCC--HHHHHHHHHCCChH
Q 009700 361 QIQAVIEANIIAPLVYLLQHA-----------------------EFEVKKEASWAISNATSGGT--REQIQFLVSQGCIK 415 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~l~ 415 (528)
.-..++. +++.++++.+... +..+...+..+|.+++.--+ -+.+..+. .+++.
T Consensus 1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~l~ 1463 (1780)
T PLN03076 1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKVLM 1463 (1780)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3333333 4566666555321 01123333334444433111 11122222 25667
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 416 PLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 416 ~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.|..++..++..+......+|.+++.....
T Consensus 1464 ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 777777888888999999999999876543
No 238
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=6.9 Score=40.73 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=124.6
Q ss_pred HhhccchhhHHHHHHHHHhhhhcCCC-CCCChhhh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 207 AQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFDQV----RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 207 ~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~----~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+-| +-.+..++.+|+..+.++.--. |....... ..-...|..+|.++-+.|+..|..-++.+...-=+.+..-+
T Consensus 181 R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred Hhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344 6678899999999999887544 44433333 44456788999999999999887777665532111110000
Q ss_pred HhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH
Q 009700 282 EAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360 (528)
Q Consensus 282 ~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 360 (528)
-..++..+..-+.. ...++|......|..+........ +++ .+++.+-..|.+. ...||..+...|..|-.....
T Consensus 260 ~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHHHHhhhhh
Confidence 01233344443433 456788888888888876544332 222 3456666777777 889999999988888432222
Q ss_pred HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH------HHHHHHHHC--CChHHHHhhcCCCC
Q 009700 361 QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR------EQIQFLVSQ--GCIKPLCDLLVCPD 425 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~------~~~~~l~~~--~~l~~L~~ll~~~~ 425 (528)
. +.+---...++..|...+..+.+..+..|.+.....+. +.+.+++.. .....+++++....
T Consensus 336 ~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 336 K---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRFYQYLHEHT 405 (1005)
T ss_pred h---hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHHHHHhcccc
Confidence 2 22222345566667777777766666666666542221 223444433 23445556665433
No 239
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.48 E-value=8.3 Score=38.30 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=120.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCChHHHHHhhcc------chhhHHHHHHHHHhhhhcCC
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSP---SCRDLVLSHGALMPLLAQLNE------HSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~Ll~ll~~------~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+..++...+++-+-.++.....++.... ..++.+.+.-+.+.+-+++.. .++.-.+.-+...|..+|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 345667777777777778888888774432 245566666566666666631 23445666778889999998
Q ss_pred CCCCChhhhHHHHHHHHHHhcCC-CH------HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhH-HH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSS-DE------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVL-VP 303 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~-d~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~-~~ 303 (528)
+.-.....+-.-+|.|..++... |+ .+..++..+|..++.... ..+.++..|.++.+.++-.-++...- .-
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 75555556677889999888743 22 378888899998887744 55778888999999987655443332 23
Q ss_pred HHHHHhHhhcCCcch---hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 304 ALRTVGNIVTGDDTQ---TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 304 al~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
++.++--.+.+.+.- ...+.. ++..+..-+... +...+.+.|..|+.+..
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 333333333322211 111111 133333333444 66788899999997654
No 240
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.40 E-value=4.8 Score=35.36 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=93.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++...+.+..++..|+..+..++..+=-.|.. .+|.|+.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 678888888999999999999999887754223332 4899999999988 999999999999998855544433
Q ss_pred HHhcCChHHHHHh---hCCCCH-HH---HHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-------hhHHHH
Q 009700 154 VIEHGAVPKFVQL---LGSASD-DV---REQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-------KLSMLR 219 (528)
Q Consensus 154 i~~~g~i~~L~~l---L~~~~~-~i---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-------~~~~~~ 219 (528)
-...| +..-..+ +..+.. .. ....+..|..+...+...|.. ++..+++.+..+. ...-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHH
Confidence 33333 2222222 222111 11 556666777777766666666 3555666663221 334455
Q ss_pred HHHHHhhhhcCCC
Q 009700 220 NATWTLSNFCRGK 232 (528)
Q Consensus 220 ~a~~~L~~l~~~~ 232 (528)
..+++..||+.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 5666666666553
No 241
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.12 E-value=11 Score=39.90 Aligned_cols=135 Identities=20% Similarity=0.163 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCC----CHHHHHHHHHHHHhhcc----CChHHHHHHHHhCcHHHHHHHhc----CCChhhHHHHHHHHh
Q 009700 242 PALAALQHLIFSS----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLL----HSSTTVLVPALRTVG 309 (528)
Q Consensus 242 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~al~~L~ 309 (528)
..+..+..++.++ ...+...++-+++.+.. ..+.....+++ .+++.+...|. ..+...+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4556666666643 45566666666666643 22110011111 24555555443 345556777899999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhc-cc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLT-QN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEV 385 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v 385 (528)
|+.... .+..+..++. .. .+..+|..|+|+|..++...+..+ -+.|+.++.+. ++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence 987632 2334444444 21 156899999999999976555543 34455666544 6889
Q ss_pred HHHHHHHHHHh
Q 009700 386 KKEASWAISNA 396 (528)
Q Consensus 386 ~~~a~~aL~nl 396 (528)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99888887654
No 242
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.10 E-value=7.5 Score=36.20 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
.|-..|.++++.+|..|+.+|+.+...-+.. .+...-+..|+..+.+ -.|......++.++..|...+ .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 4556788899999999999999988665531 1222224444444421 124445555566666666443 2222223
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcc
Q 009700 241 RPALAALQHLIF--SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 241 ~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..++..+.+-.. +.-...+..+...+..+..+..+....+ ..+++..+++.+.. .+|.-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 334444433222 2235677888888888877654333222 23577788888876 5777777777777777654441
Q ss_pred hhHHHhccCChHHHHHHhc--------ccC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 318 QTQCVIDNQGLPRLYQLLT--------QNY-KK--SIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
....+-+.+.+. .+. ++ -.+..-...|.++...++... .-.+|.|++-|.++.+.+|
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence 122223333331 111 22 234444455555555444432 3478999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 009700 387 KEASWAISNATSGGT 401 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~ 401 (528)
..++.+|..++..-+
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999988876433
No 243
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.09 E-value=0.92 Score=38.67 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=31.2
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
.+++.|..+|+.+.+..+|+++..++|.|.+-+|...+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 45778889998876799999999999999886666554
No 244
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.03 E-value=9.7 Score=45.23 Aligned_cols=263 Identities=12% Similarity=0.052 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHHHHHHHhcccC--CchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 83 SENSGLQLEATTQFRKLLSIER--CPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
+.+..+...|+..|++++...- .+....-.+..++..|..++....+.+++...+.|+.++..... .-++.| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 4466788889998988766431 11111123455788888888766668999999999999877222 223344 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhHHHHHHh--cCC----hHHHHHhhccchhhHHHHHHHHHhhhh--
Q 009700 161 PKFVQLL----GSASDDVREQAVWALGNVAGDSPSCRDLVLS--HGA----LMPLLAQLNEHSKLSMLRNATWTLSNF-- 228 (528)
Q Consensus 161 ~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--~g~----i~~Ll~ll~~~~~~~~~~~a~~~L~~l-- 228 (528)
+.+..++ ...++.+...|..++..|+.+.-. .+.. .+. +..+........+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 4444444 346788999999988888754211 0100 122 333333332222232222333333322
Q ss_pred --cCCC----------C-------------CC------ChhhhHHHHHH---HHHHhcCCCHHHHHHHHHHHHhhccC--
Q 009700 229 --CRGK----------P-------------PA------PFDQVRPALAA---LQHLIFSSDEEVLTDACWALSYLSDG-- 272 (528)
Q Consensus 229 --~~~~----------~-------------~~------~~~~~~~~l~~---L~~ll~~~d~~v~~~a~~~l~~l~~~-- 272 (528)
+... . .. .......-+|. |..+....+.+|+..|+.+|..+...
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 00 00001223343 44455567899999999999877643
Q ss_pred ---ChHHHHHHHHhCcHHHHHHHhcCC------------------C-h----hhHHHHHHHHhHhhcCCcchh---HHHh
Q 009700 273 ---TNDKIQAVIEAGVCPRLVELLLHS------------------S-T----TVLVPALRTVGNIVTGDDTQT---QCVI 323 (528)
Q Consensus 273 ---~~~~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~al~~L~~l~~~~~~~~---~~~~ 323 (528)
+++....++. +++-+++..+++. + . -+...+..+|..++.-..... ..++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444 3555555554321 0 0 022334444444443222222 2222
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+ +++..|...+..+ +..+-+.++.++.++..
T Consensus 1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 2 4555555666666 77788888888888875
No 245
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.92 E-value=3.3 Score=36.02 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcC-Chhh----HHHHH------hcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhc
Q 009700 132 LQFEAAWALTNIASG-TSEH----TRVVI------EHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSH 199 (528)
Q Consensus 132 v~~~a~~~L~~l~~~-~~~~----~~~i~------~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 199 (528)
+|..|+.+|..++.. ++.. -..++ ..+.-+.|+ -++.++++.+|..|+.++..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777663 1110 01111 112334444 45677899999999999999986654332222211
Q ss_pred C-------------------ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC--hhhhHHHHHHHHHHhcCCCHHH
Q 009700 200 G-------------------ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP--FDQVRPALAALQHLIFSSDEEV 258 (528)
Q Consensus 200 g-------------------~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v 258 (528)
. .-..|+..|....+..+...++.++..|....|... ......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 123344555556677888899999999998875433 3455677777788888999999
Q ss_pred HHHHHHHHHhhccC
Q 009700 259 LTDACWALSYLSDG 272 (528)
Q Consensus 259 ~~~a~~~l~~l~~~ 272 (528)
+..++.+++-+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999888877654
No 246
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.82 E-value=8.3 Score=37.95 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=88.2
Q ss_pred HHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc----cc-CchhHHHHHHHHHHH
Q 009700 280 VIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT----QN-YKKSIKKEACWTISN 353 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~a~~~L~n 353 (528)
+.+.+-.+.+-.-+.. +..+-+..|+..+..++.........++ ...+..+|. ++ .+.+-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 3344455555555543 3355678888889888875544332222 223444443 22 166788899999999
Q ss_pred HhcCCHH------------HHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 009700 354 ITAGSRS------------QIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421 (528)
Q Consensus 354 l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll 421 (528)
++..... .+..++...++|.|. --.+..+-++..|++.+..+-..-+++.... +++.++.+|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9863211 245566666778776 2234568899999999999988766554433 688999999
Q ss_pred CCCChHHHHHHHHH
Q 009700 422 VCPDPRIVTVCLEG 435 (528)
Q Consensus 422 ~~~~~~~~~~~l~~ 435 (528)
.+++.-+...|..+
T Consensus 356 ~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 356 QSSSYVVHTYAAIA 369 (370)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCcchhhhhhhh
Confidence 99887776655544
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.73 E-value=0.54 Score=35.68 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=58.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
.+...+..+.++.+-+|-.|+..|++++... . ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 4677888888988999999999999999874 3 111222567888899999988 89999999999999985544
No 248
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.61 E-value=7.1 Score=41.73 Aligned_cols=196 Identities=17% Similarity=0.110 Sum_probs=108.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS----ASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
.+..+.+++.... --..+|++.|..+.......... .+..+..++.+ .++.++..|+.+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4566677776644 12233445555554422122222 24555556654 5678899999998888632111
Q ss_pred H---------HHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC---CH
Q 009700 192 C---------RDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS---DE 256 (528)
Q Consensus 192 ~---------~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~ 256 (528)
. .........++.+...+. ...+..-+..++.+|.|+... ..++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1 111222335666666664 233557778889999999632 4577777777765 68
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
.++..|++++..+....++. +.+.++.++.+ .+.++|..|+.+|... .+.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 89999999999987766543 34667777765 4566888887665532 2221 134567777
Q ss_pred hcccCchhHHHH
Q 009700 335 LTQNYKKSIKKE 346 (528)
Q Consensus 335 L~~~~~~~v~~~ 346 (528)
+...++..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 766545555443
No 249
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.13 E-value=12 Score=38.26 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=77.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC--Chhh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG--TSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~ 150 (528)
.+.-++..+.+.|..++..+++.|+.+... -..++...-.|++..|..-+-+.. +.++.+|+.+|+.+-.. ++++
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChHH
Confidence 466777788899999999999999877554 566777777888888888777776 89999999999998763 3332
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS 189 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~ 189 (528)
+ ....|+.+++. ++.++|..| +.||..++
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2 23466666765 778898875 45665444
No 250
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.08 E-value=2.2 Score=37.50 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHh----------------ccCChHHHHHHhccc-----CchhHHHHHHHHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVI----------------DNQGLPRLYQLLTQN-----YKKSIKKEACWTISN 353 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~n 353 (528)
+++......++..|+|++....... .++ ....+..|+..+..+ ....-....+.+++|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3444556667777888876443322 121 123566777777551 133455677889999
Q ss_pred HhcCCHHHHHHHHH--cCc--HHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 354 ITAGSRSQIQAVIE--ANI--IAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 354 l~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
++. .++.++.+++ .+. +..|+..+.+.+..-|.-++.+|.|++.. .+.-.++.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL 141 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLL 141 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhc
Confidence 966 6788888884 334 77888888888777778889999999984 33334444
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=92.05 E-value=3.9 Score=43.72 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=110.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.|..|+..|.|.+..+...+-..+...+...+ .++ ++..||++.-+..+ ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDR-EPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 57889999999999888888888887776642 222 36677776544442 445666665533 2111
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
..+..|-..+. .+..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus 70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 12344445554 45788899999999998877777888899999999999988888889999999988887655
Q ss_pred CCCChhhhHHHHHHHHHHh
Q 009700 233 PPAPFDQVRPALAALQHLI 251 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll 251 (528)
|......+..++.+..+++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444455555656655
No 252
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.04 E-value=1.1 Score=38.50 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=79.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc--cCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID--NQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSR 359 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~ 359 (528)
...++..+|.++++.-+..++..+...+..++.. .+.+ ..++..++.+|+.+..+.+++.++.++..|.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6778999999999989999999999888776432 2222 24678889999887567889999999998875 566
Q ss_pred HHHHHHHHc---CcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 360 SQIQAVIEA---NIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 360 ~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+..+++... ++++.++.+++. ......++.+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 655555432 345555555554 46667777777777653
No 253
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=30 Score=40.66 Aligned_cols=274 Identities=16% Similarity=0.129 Sum_probs=144.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCChh
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPFD 238 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 238 (528)
+..++..|..+++..+-.+..+++.++...+.. ..-.+..+.++..+.+..++-.+.--..++..+-+.. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445555666688888888899999888544321 1112245666777755556655555566666666554 233334
Q ss_pred hhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh---hhHHH-----------
Q 009700 239 QVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST---TVLVP----------- 303 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~----------- 303 (528)
.....+..+..+-+++ ++.|+..++.++..+.+.........+.. .+..+..+|-+..+ ++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 4456677777777655 56999999999999987655444333332 33444444443221 11111
Q ss_pred --HHHHHhHhhcCCcc--hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc
Q 009700 304 --ALRTVGNIVTGDDT--QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379 (528)
Q Consensus 304 --al~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 379 (528)
...++|.=..++.. .+..+ ..-.+-...-++.++ ++.++.++..++-++--..+.... -.-+|+.|+.++.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 11222222222221 11111 111122223344555 888999999999888653333221 1225667777666
Q ss_pred cCChHHHHHHHHHHHHhcCCCCHHH---H--------------HHHH-HCCChHHHHhhcCC-CChHHHHHHHHHHHHHH
Q 009700 380 HAEFEVKKEASWAISNATSGGTREQ---I--------------QFLV-SQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL 440 (528)
Q Consensus 380 ~~~~~v~~~a~~aL~nl~~~~~~~~---~--------------~~l~-~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~ 440 (528)
+...-.|......+..+......+. . .+.. +.|+=-.+..+++. .|.+.++.+++.+.+++
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 6544343333333333322110000 0 0111 33444455555653 57778888888888866
Q ss_pred Hh
Q 009700 441 KI 442 (528)
Q Consensus 441 ~~ 442 (528)
..
T Consensus 1189 ~~ 1190 (2067)
T KOG1822|consen 1189 NS 1190 (2067)
T ss_pred HH
Confidence 53
No 254
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.01 E-value=3.3 Score=36.28 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHcc---------CChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCCh
Q 009700 357 GSRSQIQAVIEANIIAPLVYLLQH---------AEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDP 426 (528)
Q Consensus 357 ~~~~~~~~l~~~~~i~~L~~ll~~---------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~ 426 (528)
.....++.+++.|++..|+.+|.. .+.....+++.+|..+.. +...+..++. .+++..|+..|.+++.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n--~~~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN--TKYGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS--SHHHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc--cHHHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 456788889988999999988753 245788889999988887 4566666664 6899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 009700 427 RIVTVCLEGLENIL 440 (528)
Q Consensus 427 ~~~~~~l~~l~~i~ 440 (528)
.++..+++.|..++
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987764
No 255
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.69 E-value=15 Score=36.27 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-----CChhhHHHHHHHHhHhhcCCcc--------hhHHHh
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-----SSTTVLVPALRTVGNIVTGDDT--------QTQCVI 323 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~--------~~~~~~ 323 (528)
.++..+|..+...+...++....++.. ++..+..+|.. ....+...|+..|+.++..... ..+.++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~-fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPT-FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 455566666666555555555444443 56666666654 2234556677777776543211 112222
Q ss_pred ccCCh------------------HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH-c--cCC
Q 009700 324 DNQGL------------------PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL-Q--HAE 382 (528)
Q Consensus 324 ~~~~l------------------~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~ 382 (528)
+.-++ +.+-.-+..+....-|..|+..+..++.........++. +.+..++.-. . +.+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCccc
Confidence 22111 122222222212456788999999998654444433332 1222222211 1 346
Q ss_pred hHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccC
Q 009700 383 FEVKKEASWAISNATSGGTRE-----------QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGS 451 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~~~-----------~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 451 (528)
++-+..|+..++.++..+... ....+....+++-|. --.+..|-++..|++.+..+-..-++.
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~----- 342 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE----- 342 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-----
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-----
Confidence 788889999999998765210 234444555666555 112344556666666665544433211
Q ss_pred CcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 452 TTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 452 ~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
.+ .+.+..+.....+++.-|+..|...|
T Consensus 343 ----~l------~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 ----QL------LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----HH------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----HH------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11 23467788888899999998887643
No 256
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.51 E-value=6.5 Score=42.01 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC----CChhhHHHHHHHHhHhhcCC
Q 009700 242 PALAALQHLIFSSDE--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH----SSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 242 ~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~al~~L~~l~~~~ 315 (528)
.++..+..++.+.+. ......++.+......+. . .++..+..++.. .++.++..|+-+++.++...
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 455666666665432 222223333333332222 1 144555555554 45667888888888887432
Q ss_pred cchh---------HHHhccCChHHHHHHhc----ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-
Q 009700 316 DTQT---------QCVIDNQGLPRLYQLLT----QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA- 381 (528)
Q Consensus 316 ~~~~---------~~~~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~- 381 (528)
.... ...+...+++.+...|. .. +..-+..++.+|+|+.. + ..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKE 534 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcc
Confidence 2110 11222345666666665 23 55778888999999942 2 3566677766665
Q ss_pred --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhhhhchhccCCcchhh
Q 009700 382 --EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIGEADKEAGSTTANVY 457 (528)
Q Consensus 382 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~ 457 (528)
...+|..|++||..++...+... .+.|..++.+ .+++++..|+. -++...+.
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~v---------~~~l~~I~~n~~e~~EvRiaA~~---~lm~~~P~------------ 590 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEKV---------REILLPIFMNTTEDPEVRIAAYL---ILMRCNPS------------ 590 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHHH---------HHHHHHHHH-TTS-HHHHHHHHH---HHHHT---------------
T ss_pred ccchHHHHHHHHHHHHHhhcCcHHH---------HHHHHHHhcCCCCChhHHHHHHH---HHHhcCCC------------
Confidence 68899999999999877543222 2334444433 56777766653 33443332
Q ss_pred HHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 458 SEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
...+. .....+...++..|.......|
T Consensus 591 ~~~l~-----~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 591 PSVLQ-----RIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHH-----HHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHhhCchHHHHHHHHHhc
Confidence 11121 1224445677788877665544
No 257
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.42 E-value=3.6 Score=41.40 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD---LPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
...+.+.+.+++...+..|+..+..+... ...+.+++...++..|.+++.+++ ..++...++.++..+.....-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 46778888899998888888888877443 456788998888999999998876 2355566666666655422100
Q ss_pred HHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
-+ .+...++.....+..- .+..+-..|+..|-++...++..++.+.+.-.+..|+..+ +..+..++..|...+..+
T Consensus 163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 00 1111223333333322 4456778888999999888887888888888899999999 666777777777777777
Q ss_pred cCCCC
Q 009700 229 CRGKP 233 (528)
Q Consensus 229 ~~~~~ 233 (528)
....|
T Consensus 241 ~~~a~ 245 (713)
T KOG2999|consen 241 FRKAP 245 (713)
T ss_pred HhhCC
Confidence 66654
No 258
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.31 E-value=5.1 Score=34.81 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=88.9
Q ss_pred hHHHHHHHHhHhhcCCcchh-----HHHhcc-------CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQT-----QCVIDN-------QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~-----~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
+|..|+.+|..++...+... ..++.. .-...+.-++.++ ++++|..|+.++..+..+........-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 67778888888876632211 111111 2233344455666 9999999999999998876554433321
Q ss_pred cC-------------------cHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChH
Q 009700 368 AN-------------------IIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPR 427 (528)
Q Consensus 368 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 427 (528)
.+ +-..|+..+..+ +..+....+.++..++.+.+....+.=.-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 223344444444 6777888899999988876544332101112455666677789999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 009700 428 IVTVCLEGLENILKIGE 444 (528)
Q Consensus 428 ~~~~~l~~l~~i~~~~~ 444 (528)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999888876543
No 259
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=10 Score=39.37 Aligned_cols=291 Identities=13% Similarity=0.120 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+=+.+.++++.++--|+-.+.-.-+.-.+ .+ .-++..|.+.+++++ ..++..|+.-|+-.-+++. ++.
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~n-e~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGsq--~e~ 487 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFN-EC-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGSQ--REE 487 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeecccccc-cc-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCCc--hHH
Confidence 45555566666666665555443322221111 11 123566777787777 7788888877776655432 233
Q ss_pred HHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 154 VIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+. ..|..++.+. ..++.-.|..+|+-+...+.. .. +...+++.++..-.........+-....|..+..+
T Consensus 488 V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llflg 559 (878)
T KOG2005|consen 488 VL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--ED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFLG 559 (878)
T ss_pred HH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhc
Confidence 22 1444556553 356777777777777644321 01 11123444443321111223333333333333333
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHhcCCC---hhhHHHHHHH
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHSS---TTVLVPALRT 307 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~al~~ 307 (528)
... .+...+..+..-...+... +.++...|.. ...+.-. ++. ..+...-..+. ..-...|+--
T Consensus 560 kqe--------~~d~~~e~~~~i~~~~~~~-~~~lv~~caYaGTGnvl~-Iq~---q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 560 KQE--------SVDAVVETIKAIEGPIRKH-ESILVKSCAYAGTGNVLK-IQS---QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------hHHHHHHHHHHhhhHHHHH-HHHHHHHhhccccCceEE-ech---hhhhhhcCCCccchhhhccchhhh
Confidence 211 1111111111111122111 1222222211 1101000 000 11222222111 1122245555
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
++-++.+.+--.+. .+..+-.+|..+ ++.+|+..=-+++-++..+|.. +++..|-+.....+.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 55555555433332 345677788888 9999999999999998877753 4788898999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH
Q 009700 388 EASWAISNATSGGTREQIQF 407 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~ 407 (528)
+++.+++-+-.+.+...+..
T Consensus 694 naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred HHHHHhccccCCcchHHHHH
Confidence 99999998887665554443
No 260
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.16 E-value=17 Score=35.98 Aligned_cols=306 Identities=15% Similarity=0.148 Sum_probs=149.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCC-chhHHHHhcCcHHHHHHhhc----C------CCChHHHHHHHHHHHHHhcCChhhH
Q 009700 83 SENSGLQLEATTQFRKLLSIERC-PPIEEVIRAGVVPRFVEFLD----R------HDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~g~i~~Lv~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.+...+..|-..|.+.+..... +....+.+ -++.|++.++ + +.+..+..+|+.+|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 34445555665556555554322 22222221 1344444332 1 1136788999999999987 55444
Q ss_pred HHHHhcC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---c-chhhHHHHHHH
Q 009700 152 RVVIEHG---AVPKFVQLLGS--ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---E-HSKLSMLRNAT 222 (528)
Q Consensus 152 ~~i~~~g---~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~-~~~~~~~~~a~ 222 (528)
..+-..- .+...+..+.. .+..+....+|+|..-- .++ .+.....+..++..+. + -++..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSP----KIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCC----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4433221 34444555544 44567777777776532 222 2333334444444442 2 34567778888
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc--CCh-HHH---HHHHHh----C-----cHH
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD--GTN-DKI---QAVIEA----G-----VCP 287 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~-~~~---~~~~~~----~-----~l~ 287 (528)
.++.+|....|..-......-+|.++..+-+....++..|...+..+.. .+. ... ....+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888775544333334456777766666666666665444433321 111 111 111111 1 344
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA---GSRSQIQA 364 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~ 364 (528)
.+..++...+.....+-+|..--..-+.......-.-...+...-..+.++ ++.+|.+|..+=..+.- .+......
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 466666663433343333333322222221110111123455555566777 88888888655444432 22222222
Q ss_pred HHHcCcHHHHHHHHccC-Ch----HHHHHHHHHHHHhcC
Q 009700 365 VIEANIIAPLVYLLQHA-EF----EVKKEASWAISNATS 398 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~ 398 (528)
.+.. +..++...+... .. .++..+...++++..
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 2221 222333334333 23 566677777776654
No 261
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.15 E-value=1 Score=34.25 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=59.3
Q ss_pred hHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 328 LPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 328 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
+...+..+.++ .+.+|..+...|..+..... ....--.+++..+...++++|+-|--+|+.+|+.++...+......
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 44566777888 88899999999999987544 1111124578888899999999999999999999998655444444
Q ss_pred HH
Q 009700 408 LV 409 (528)
Q Consensus 408 l~ 409 (528)
++
T Consensus 82 L~ 83 (92)
T PF10363_consen 82 LL 83 (92)
T ss_pred HH
Confidence 43
No 262
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=14 Score=39.42 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 234 PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
.........++|.++.+|..+..-+-.+|+.++-.+..
T Consensus 490 ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 490 QLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred cCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 34445567889999999999999999999999877654
No 263
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=25 Score=37.60 Aligned_cols=239 Identities=11% Similarity=0.156 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-----hhhH
Q 009700 240 VRPALAALQHLIFSSD-------------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-----TTVL 301 (528)
Q Consensus 240 ~~~~l~~L~~ll~~~d-------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~ 301 (528)
+...++.+.+++..++ .+++...|..+.-.+...++..+.++.. ++.....+|.+.. +...
T Consensus 232 m~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~-fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 232 MKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPD-FVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred HHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHHHHHHhcCCCccHHHHH
Confidence 3455666666665221 3456667777776666666666655443 5555566665532 3345
Q ss_pred HHHHHHHhHhhcCCcch--------h------------------HHHhccCChHHHHHHhcccCchh-HHHHHHHHHHHH
Q 009700 302 VPALRTVGNIVTGDDTQ--------T------------------QCVIDNQGLPRLYQLLTQNYKKS-IKKEACWTISNI 354 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~--------~------------------~~~~~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl 354 (528)
..|+..|.+++...... . ..+.+.+-++.+-.-|..+ |.+ -|+.||..+.-+
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL 389 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGL 389 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHH
Confidence 56777777776532211 1 1223344566666666655 444 456778888889
Q ss_pred hcCCHHHHHHHHHcCcHHHHHH-HHc--cCChHHHHHHHHHHHHhcCCCCHHHH-----HHHHHCCChHH----HHhhcC
Q 009700 355 TAGSRSQIQAVIEANIIAPLVY-LLQ--HAEFEVKKEASWAISNATSGGTREQI-----QFLVSQGCIKP----LCDLLV 422 (528)
Q Consensus 355 ~~~~~~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~-----~~l~~~~~l~~----L~~ll~ 422 (528)
+......+..++.. .+..+++ ... +.++.-+..|.+.+..++..+..... ..++ ++... +..-|.
T Consensus 390 ~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lv--dv~~Ff~~~ilp~L~ 466 (960)
T KOG1992|consen 390 CKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELV--DVVDFFANQILPDLL 466 (960)
T ss_pred HHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccc--cHHHHHHHHhhHHhc
Confidence 87665555444432 2333333 222 23555666677777777654321100 0000 11111 111122
Q ss_pred C----CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 423 C----PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 423 ~----~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
+ ..|-+...++ .-+...-.... . +.. ...+..+......+..-|+..|...+++.+...+.
T Consensus 467 s~~vn~~pilka~aI---Ky~~~FR~ql~------~-~~l-----m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 467 SPNVNEFPILKADAI---KYIYTFRNQLG------K-EHL-----MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cCccccccchhhccc---ceeeeecccCC------h-HHH-----HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 2 1222222222 22221111100 0 011 12256677777888889999999999998886554
No 264
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.88 E-value=25 Score=37.47 Aligned_cols=318 Identities=14% Similarity=0.113 Sum_probs=163.6
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
...+++.++.+ |.-++..++++++-+..+. +-.-+.+. -..+...+..++..-..-+.+...+..++-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 56677777765 6678889999998777653 11111111 13334444555544322345566666666665533333
Q ss_pred HHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhccchh---hHHHHHH
Q 009700 151 TRVVIEHGAVPKFVQLLG--SASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNEHSK---LSMLRNA 221 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~~~~---~~~~~~a 221 (528)
..... ..++..+-.+-+ .+.+-+|...+.+|.|+.. .++.+.. ++-+++++-.+..+ .-+.+.+
T Consensus 607 I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 607 IAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred hhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence 22111 112222222222 2556778888888888762 2222211 23334444322211 1233333
Q ss_pred HHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHH-HhhccCChHHHHHHHHhCcHHHHHHHhcCCChhh
Q 009700 222 TWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTV 300 (528)
Q Consensus 222 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 300 (528)
...-..+.... ..-......++|.|...+....+.+ ..++.++ +++.-.++... .....|++..+..++.+-..+-
T Consensus 680 meLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dvr~eg 756 (978)
T KOG1993|consen 680 MELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDVRNEG 756 (978)
T ss_pred HHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 32222222222 2222344567788887776543333 2233333 23333333322 2233478888999988866666
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHH---
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIE-ANIIAPLV--- 375 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--- 375 (528)
....+.++..+...++ ........++++.+..-+-.+ ..|.+-..-..+++.+.-.+++....++. ..-...++
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 7777888877776555 233445567777776655322 25666666777777777667776655553 22111222
Q ss_pred -----HHHcc-CChHHHHHHHHHHHHhcCCCCHH
Q 009700 376 -----YLLQH-AEFEVKKEASWAISNATSGGTRE 403 (528)
Q Consensus 376 -----~ll~~-~~~~v~~~a~~aL~nl~~~~~~~ 403 (528)
.+... .+++-|+--+-|+..+...+++.
T Consensus 836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 836 IGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 11211 25666666666666666654443
No 265
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.84 E-value=1.9 Score=35.62 Aligned_cols=74 Identities=11% Similarity=-0.049 Sum_probs=61.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..+..-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++.. .++.+...++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778899999999999999999999888888888888999999999853 46788888888887766544
No 266
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.80 E-value=1.7 Score=38.39 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIASG-TSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|.-+++. ++....+++..+--.|..+|...+ ..-++..++.+++.+... +.+....+....++|.
T Consensus 116 RvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 445566666666664 344444455443222334443222 345888999999999884 4555666777899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
+++.++.+++--+..++.+++.+..++...+
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 9999999998889999999999987775443
No 267
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.62 E-value=1.2 Score=39.06 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhHHHHHH---------------hcCChHHHHHhhcc-----chhhHHHHHHHHHhhhh
Q 009700 169 SASDDVREQAVWALGNVAGDSPSCRDLVL---------------SHGALMPLLAQLNE-----HSKLSMLRNATWTLSNF 228 (528)
Q Consensus 169 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~Ll~ll~~-----~~~~~~~~~a~~~L~~l 228 (528)
.+.......++..|+|++.....++..+- ....+..|+..+.+ .....-..+.+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34556777888899999876654443321 11245666666644 12355678889999999
Q ss_pred cCCCCCCChhhh--HH--HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHH
Q 009700 229 CRGKPPAPFDQV--RP--ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 229 ~~~~~~~~~~~~--~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
++.+....+... .. .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 987533322221 22 3677888888887777778899999999765544
No 268
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.42 E-value=0.85 Score=40.86 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-HHHHHHhcCC
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGA-------VPKFVQLLGS-ASDDVREQAVWALGNVAGDSPS-CRDLVLSHGA 201 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~-------i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~ 201 (528)
.-|..|+.+|++++- .+.+.+.++..+- +..|+.+|.. .++..|+.|+-.|.++|..+.. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999988 5566666665553 3455555554 7789999999999999966654 5566677889
Q ss_pred hHHHHHhhc
Q 009700 202 LMPLLAQLN 210 (528)
Q Consensus 202 i~~Ll~ll~ 210 (528)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
No 269
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.42 E-value=23 Score=36.28 Aligned_cols=259 Identities=13% Similarity=0.060 Sum_probs=134.2
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 78 VQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 78 ~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
-.++..+ ..+.|..++..+..++....... ... =..+.+.+..+..++.-..-+.+|..++.+..+. . ..+
T Consensus 34 ~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~--~~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~ 105 (464)
T PF11864_consen 34 KDLIDPNQPSEARRAALELLIACIKRQDSSS--GLM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFE 105 (464)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHcccccc--HHH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcc
Confidence 3344443 45678888888887776642201 011 1223333343322332223334444444432222 2 245
Q ss_pred cCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 157 HGAVPKFVQLLGSA---------------------------SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 157 ~g~i~~L~~lL~~~---------------------------~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
.++.|.|...|..- +.......+..+.|+...+...-+.-.-.+.+..++.+.
T Consensus 106 ~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC 185 (464)
T PF11864_consen 106 YEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTIC 185 (464)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 56777777766321 122333444455555543322111111123444455554
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 289 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 289 (528)
....+......++.++-.+.... ..+......++..|....... +....+-.++.||+...... ..+..|
T Consensus 186 ~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L 255 (464)
T PF11864_consen 186 KSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTL 255 (464)
T ss_pred hccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHH
Confidence 34444444556666655554432 222333445555555553333 55566666788887654321 246677
Q ss_pred HHHhcC------CChhhHHHHHHHHhHhhcCCcchhHHHhc-c--CChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 290 VELLLH------SSTTVLVPALRTVGNIVTGDDTQTQCVID-N--QGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 290 ~~lL~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
..+|.. .+..+..-|+..++.+..+.......-+. . -+++.+...++.. ++.+-.+.+..+.++.
T Consensus 256 ~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 256 CDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 777732 34556778999999888776332211222 1 2778888888877 7777778888888876
No 270
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.84 E-value=17 Score=33.88 Aligned_cols=223 Identities=13% Similarity=0.034 Sum_probs=124.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC--CCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR--HDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
|=..|.++|+..|..|+..|..++..-.... ....-+..|++++.+ .+ ......++..+..+.....-.....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3346789999999999999999988742111 111124444444432 23 3344444666666664221111110
Q ss_pred HhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhHHHHHH--hcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 155 IEHGAVPKFVQLLG--SASDDVREQAVWALGNVAGDSPSCRDLVL--SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 155 ~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..++..+.+-.. +.....|..+...|..+...... .+. ..+.+..++..+....|+.-...+...+..+..
T Consensus 79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~---~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE---ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH---HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 012233333221 23467788888888888755332 222 234677788888666788877777777777766
Q ss_pred CCCCCChhhhHHHHHHHHHHhc-----C-CCH-H-HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIF-----S-SDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLV 302 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~-----~-~d~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 302 (528)
..+. ..........+....- . +|+ . ..++.-.+|.......+.. ..-.+|.|++-|.++.+.++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHH
Confidence 5432 2223333333332221 1 122 1 2223333333333333322 223789999999999999999
Q ss_pred HHHHHHhHhhcCCc
Q 009700 303 PALRTVGNIVTGDD 316 (528)
Q Consensus 303 ~al~~L~~l~~~~~ 316 (528)
.++.+|..++...+
T Consensus 227 D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 227 DSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999998886544
No 271
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=89.70 E-value=5.4 Score=48.23 Aligned_cols=270 Identities=14% Similarity=0.123 Sum_probs=140.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCC--chhHHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 009700 82 LSENSGLQLEATTQFRKLLSIERC--PPIEEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEH 157 (528)
Q Consensus 82 ~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 157 (528)
...+++.+..+...++.++..... ....... ...++..+..+-....++.++......+. ........+.
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~ 564 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP 564 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence 355677777776666666554211 0000000 11223333332222222555444433332 1122223444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+.+..+...+....-.+++.+...+++++..+|.+.-.-+....+..+-.+- .+.-.-+...+..-+..+....+.-..
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 5556666677777888999999999999987663321111111111111110 111111111111111111111111111
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~ 316 (528)
..+.+.+..++..+...+..+...+..+++.||....+.....++ ..++.+.+.+.. .+..-+..++++++++.....
T Consensus 644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 222344456666777777888888899999998766544555555 466666666654 455567889999999987655
Q ss_pred chhHHHhc-cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 317 TQTQCVID-NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 317 ~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
.......+ .-++..+...+.......++.++...++++....+
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 42222221 24566677777666567788899888887765433
No 272
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.59 E-value=19 Score=38.10 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=91.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhcc---chhhHHHHHHHHHhhh
Q 009700 159 AVPKFVQLLGS----ASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNE---HSKLSMLRNATWTLSN 227 (528)
Q Consensus 159 ~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~~~~a~~~L~~ 227 (528)
.+..+..++.+ ..+.++..|+-+++++.. +.+.+... +....++.+...|.. ..+..-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 34556666664 457788888988888762 22111111 112245556555532 2344455667778887
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhc-C--CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIF-S--SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLV 302 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 302 (528)
+... ..++.+..++. . .+..++..|+|+|..++...+.. +-+.++.++.+ .+.++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHH
Confidence 7643 34555555555 2 24689999999999887655433 33556666655 4567888
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKK 345 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 345 (528)
.|+..|... .+.. ..+..+...+...++..|+.
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence 777665432 1221 23456666776654455544
No 273
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=89.56 E-value=24 Score=35.70 Aligned_cols=265 Identities=13% Similarity=0.096 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC----CCCChhhhHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK----PPAPFDQVRPALA 245 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~ 245 (528)
+++-+-....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456666666666666554443343333331 22222222223345555555555555554432 2222345578889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc
Q 009700 246 ALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID 324 (528)
Q Consensus 246 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 324 (528)
.+...|+.+-.+..-++...++.+.+..+ ........ .+++.|+.-.-.....-.-...+.|..+....+... ..
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~-~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~ 196 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYK-QLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA 196 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTG-GGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence 99999998878888888888888876543 11111000 123333222111111222334556666655444322 22
Q ss_pred c----CChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcC
Q 009700 325 N----QGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATS 398 (528)
Q Consensus 325 ~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 398 (528)
. +++..+-+++.+. .. -.++...|..+....+. ..+..+. .++..++.-|++. ..+..+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp -S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 2 3455555667665 22 24567777777654333 3333332 2555555555543 45555555556665554
Q ss_pred CCCHHHHHHHHH---CCChHHHHhhc-----C-CCChHHHHHHHHHHHHHHHhh
Q 009700 399 GGTREQIQFLVS---QGCIKPLCDLL-----V-CPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 399 ~~~~~~~~~l~~---~~~l~~L~~ll-----~-~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..+++..-..++ .|+...+..-+ + -..+.-++.+.-++.+++...
T Consensus 273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 334444444343 24444443321 1 123333455556677777544
No 274
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.54 E-value=9.9 Score=40.74 Aligned_cols=311 Identities=15% Similarity=0.117 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh------c
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE------H 157 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~ 157 (528)
+|..+...++..+..++.. ......+++.|++..|+.. +..++..+....||..|.+ .......+.. .
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 3445566777777777765 4566677777777665554 3323344444556666665 3222222221 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------c-----------hhhHHHH
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------H-----------SKLSMLR 219 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------~-----------~~~~~~~ 219 (528)
.++..-+.+|......-+.++...++..... -..-+.+-.+..+..|+.++.. + .+...-.
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 3444555566554444444444333322111 1122333444556666666621 1 1122334
Q ss_pred HHHHHhhhhcCCCCCCChhh------hHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhccCCh-------HHHHHH
Q 009700 220 NATWTLSNFCRGKPPAPFDQ------VRPALAALQHLIFSS------DEEVLTDACWALSYLSDGTN-------DKIQAV 280 (528)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~~~------~~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~-------~~~~~~ 280 (528)
..|.+|....+..-...... ..+..+..++-+... ..+..+.++|-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 45555544332210000000 001111111111111 12334455555544443322 223445
Q ss_pred HHhCcHHHHHHHhcC-CC-------hhhHHHHHHHHhHhhcCCcchhHHHh-----c-c-CChHHHHHHhccc---Cchh
Q 009700 281 IEAGVCPRLVELLLH-SS-------TTVLVPALRTVGNIVTGDDTQTQCVI-----D-N-QGLPRLYQLLTQN---YKKS 342 (528)
Q Consensus 281 ~~~~~l~~L~~lL~~-~~-------~~v~~~al~~L~~l~~~~~~~~~~~~-----~-~-~~l~~L~~lL~~~---~~~~ 342 (528)
.+.+++..++.+... .+ ......|+.+|.-+..-.+-+.+..- + + .++..++..-... .+++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe 677 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE 677 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence 666777777777654 22 23455566666555554444332221 1 1 1333333322211 1788
Q ss_pred HHHHHHHHHHHHhcCCHHH-------------------------------HHH----HHHcCcHHHHHHHHccCC-----
Q 009700 343 IKKEACWTISNITAGSRSQ-------------------------------IQA----VIEANIIAPLVYLLQHAE----- 382 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~-------------------------------~~~----l~~~~~i~~L~~ll~~~~----- 382 (528)
+++.|+.+|.|+....|.. ... +...+.|..|+.+|+...
T Consensus 678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a 757 (1516)
T KOG1832|consen 678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA 757 (1516)
T ss_pred HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence 9999999999987533111 111 223678999999998764
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 009700 383 FEVKKEASWAISNATSGGT 401 (528)
Q Consensus 383 ~~v~~~a~~aL~nl~~~~~ 401 (528)
..+|.-||.+|.-++...+
T Consensus 758 D~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHHHHHhccccCcH
Confidence 3689999999999998543
No 275
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.96 E-value=2.7 Score=35.00 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=62.6
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.+|.......+.+.+++..|..++.. .++.+...++..+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 456667778889999999999999999999988888888888999999999988 77888888888887765443
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.58 E-value=2.8 Score=37.04 Aligned_cols=139 Identities=11% Similarity=0.158 Sum_probs=88.0
Q ss_pred hHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN----YKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPL 374 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L 374 (528)
-...|+..|..+++..+ ....++++.+--.+..+|... ....+|-.++.+|+.+.. +++..+..+....++|.+
T Consensus 116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34556666666666443 333566665544445555322 135688899999999987 577778888889999999
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHH
Q 009700 375 VYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 375 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
++++..++.--+.-|+..+..+..+ ....+|+.+. .++..++ ++.+.....+...++.+..++..
T Consensus 195 LrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999999888888888888887763 3334443321 1122222 22344556666677666655543
No 277
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.41 E-value=16 Score=32.11 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=57.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.++.++++..+++ ..++..|+.++..+....--+- .-.+|.|+.+..++++.++..|...+..+....+.+-..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3667778777887 8999999999988877221111 126899999999999999999999999998777664443
No 278
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.31 E-value=22 Score=33.12 Aligned_cols=177 Identities=18% Similarity=0.134 Sum_probs=102.2
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-------ChhhHHHHHhcCChHHHHHhhCCCC----HHHHHHHHHHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-------TSEHTRVVIEHGAVPKFVQLLGSAS----DDVREQAVWALG 183 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~i~~~a~~~L~ 183 (528)
|+-+.+++-|.++. ....++..|..++.- +++.+-.+.=.+.+|.++.-++.+. ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 44555555555544 345555666666552 1222222222356777877777765 244556778888
Q ss_pred HhhCCChhHHHHHHhcCChHHHHHhhccc---hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHH
Q 009700 184 NVAGDSPSCRDLVLSHGALMPLLAQLNEH---SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLT 260 (528)
Q Consensus 184 nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~ 260 (528)
.+|.... ...+..++....+. +..+....++..|..-.. |. .....+-.|..+|.++-+.++.
T Consensus 141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence 8874321 12334444444222 234455555555544321 21 2245677788999888899999
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 261 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 261 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
.++.+|..+...-+-... ...+++..+.+++..+.+ ..|+.+|-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHHh
Confidence 999999988765432211 444688899999987654 456666655544
No 279
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=88.21 E-value=4 Score=31.33 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=57.4
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
...++..|++.++.+++.....++..+..+++... -+..+.+.|+.+-+.++....++..+.....++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44578888888888888888889999999776643 366778899999999999999999998888887
Q ss_pred HH
Q 009700 490 ER 491 (528)
Q Consensus 490 ~~ 491 (528)
++
T Consensus 96 ~~ 97 (98)
T PF14726_consen 96 DQ 97 (98)
T ss_pred hc
Confidence 64
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.18 E-value=9.8 Score=32.62 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=72.6
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG--AVPKFVQLLGS-ASDDVREQAVWALGNVA---GDS 189 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~i~~~a~~~L~nl~---~~~ 189 (528)
.+..+..+|++.+ +.-+-.++..+...+..++ .+.+.+.| -+..+++.|+. +.+.+.+.++.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4666788888887 7888888888777776321 34443433 57788888887 45778888998888886 444
Q ss_pred hhHHHHHHhcC---ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC
Q 009700 190 PSCRDLVLSHG---ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 190 ~~~~~~~~~~g---~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 236 (528)
|+....+.... ++..++.++.+ ......++.+|..+....|..-
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccc
Confidence 55433333222 23444444421 4566677777777776554433
No 281
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=47 Score=36.77 Aligned_cols=354 Identities=16% Similarity=0.145 Sum_probs=174.0
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
++-.+|.++-.+..-...+|..-+..+.--...-+.-+.+++ -.|+-+|+.+-...+....+.....+.+-+..
T Consensus 507 elytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL------lSLCvLLqqpIssalkhtIlsffvKLIsfDqq 580 (2799)
T KOG1788|consen 507 ELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL------LSLCVLLQQPISSALKHTILSFFVKLISFDQQ 580 (2799)
T ss_pred hccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH------HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHH
Confidence 334566666666655555555555444322222113333332 23566666655445555555666666665666
Q ss_pred hHHHHHhcCChHHHHHhhCC------C---------------CH--------------------------HHHH------
Q 009700 150 HTRVVIEHGAVPKFVQLLGS------A---------------SD--------------------------DVRE------ 176 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~------~---------------~~--------------------------~i~~------ 176 (528)
.++.+.+-|++..|...|+. + ++ .+.+
T Consensus 581 yKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltit 660 (2799)
T KOG1788|consen 581 YKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTIT 660 (2799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhh
Confidence 67777777888777765542 0 00 0000
Q ss_pred HHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--
Q 009700 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-- 254 (528)
Q Consensus 177 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-- 254 (528)
....+|..+.....++...+.+..++..++..+- +.+.+...+..++.|....|.... ..-+-.++..|++.
T Consensus 661 vgwDcLisllKnnteNqklFreanGvklilpfli---ndehRSslLrivscLitvdpkqvh---hqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 661 VGWDCLISLLKNNTENQKLFREANGVKLILPFLI---NDEHRSSLLRIVSCLITVDPKQVH---HQELMALVDTLKSGMV 734 (2799)
T ss_pred chHHHHHHHHhccchhhHHHHhhcCceEEEEeee---chHHHHHHHHHHHHHhccCccccc---HHHHHHHHHHHHhcce
Confidence 0112333333444444455555555444444441 334555666777777665543211 22333444444431
Q ss_pred ------C----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--------C--ChhhHHHHHHHHhHh---
Q 009700 255 ------D----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--------S--STTVLVPALRTVGNI--- 311 (528)
Q Consensus 255 ------d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------~--~~~v~~~al~~L~~l--- 311 (528)
+ .....+.+.++..+...+......+-+++++..|...|.. + +..+...-..+|-.+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 1 2345555666666654444344445556666666655532 1 111111111221111
Q ss_pred -hcCCcchh-------------HHHhccC---------ChHHHH----HHhcccCchhHHHHHHHHHHHHh----c----
Q 009700 312 -VTGDDTQT-------------QCVIDNQ---------GLPRLY----QLLTQNYKKSIKKEACWTISNIT----A---- 356 (528)
Q Consensus 312 -~~~~~~~~-------------~~~~~~~---------~l~~L~----~lL~~~~~~~v~~~a~~~L~nl~----~---- 356 (528)
...++... ..+...| .+..+. +.+.++ .-.--..||..+-.+- +
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvpp-fLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPP-FLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCc-hhhhhHHHHHHHhhcccceeeeccC
Confidence 11122111 1111222 111111 112222 2122223343333221 1
Q ss_pred -C-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CChHHHHH
Q 009700 357 -G-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC---PDPRIVTV 431 (528)
Q Consensus 357 -~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~ 431 (528)
+ .....+.+...|++..+++.+-...++.+.+-...+..++... +.....+...|+++.|.+.+.. +.......
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRas-pfnaelltS~gcvellleIiypflsgsspfLsh 972 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS-PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSH 972 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC-CCchhhhhcccHHHHHHHHhhhhhcCCchHhhc
Confidence 1 1122456778999999999988888899999999998888764 4555555677888887776642 33344444
Q ss_pred HHHHHH
Q 009700 432 CLEGLE 437 (528)
Q Consensus 432 ~l~~l~ 437 (528)
++.++.
T Consensus 973 alkIve 978 (2799)
T KOG1788|consen 973 ALKIVE 978 (2799)
T ss_pred cHHHHH
Confidence 554443
No 282
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.93 E-value=2.1 Score=35.61 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|..+...-+......+...+++..|+.++....++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999888875455566777888999999999754458899999988888775
No 283
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=19 Score=40.76 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009700 427 RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLER 491 (528)
Q Consensus 427 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~ 491 (528)
+.....+.+|..++...-+.-. ..|.+....++ .++-+..+..+.++++.-.|...+.+
T Consensus 1071 et~~ltisgIaklf~e~fk~ll----nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLL----NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH----hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHH
Confidence 4455566677766654322211 02334443332 24556666778888887777665554
No 284
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.78 E-value=23 Score=35.80 Aligned_cols=220 Identities=10% Similarity=0.082 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhhC----CChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-CCChhhhHHHH
Q 009700 170 ASDDVREQAVWALGNVAG----DSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PAPFDQVRPAL 244 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l 244 (528)
.+|..-.....+++.+.. ..+.... -++...+|++...| ..+-.+..-++...|+.+.+..+ .........++
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~ 161 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLF 161 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGH
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 446655555555555542 2222111 23444567777777 44445666677777776665543 22222333444
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhC----cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcch-
Q 009700 245 AALQHL-IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAG----VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQ- 318 (528)
Q Consensus 245 ~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~- 318 (528)
|.|+.- +-.....+ -...+.|.......+..+ ...+ ++..+-+++.+.. .-..+...|..+....+..
T Consensus 162 ~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~ 235 (435)
T PF03378_consen 162 PPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEA 235 (435)
T ss_dssp HHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHH
T ss_pred HHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHH
Confidence 443321 11111111 112222222222111111 1112 3333334555543 2345777777777655432
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHH---cCcHHHHHHHH-----cc-CChHHHHH
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIE---ANIIAPLVYLL-----QH-AEFEVKKE 388 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll-----~~-~~~~v~~~ 388 (528)
.+..+ ..++..+..-|++....+..+..+..++.++. .+++..-..++ .|++..++.-+ .. ..+.=|+-
T Consensus 236 l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi 314 (435)
T PF03378_consen 236 LEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKI 314 (435)
T ss_dssp HGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhH
Confidence 11111 13445555556554356666666666666654 34444333333 44444444321 11 12333555
Q ss_pred HHHHHHHhcC
Q 009700 389 ASWAISNATS 398 (528)
Q Consensus 389 a~~aL~nl~~ 398 (528)
++.+++++..
T Consensus 315 ~~vGltkLL~ 324 (435)
T PF03378_consen 315 CAVGLTKLLC 324 (435)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555665543
No 285
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=87.67 E-value=19 Score=33.13 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=66.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQI 362 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~ 362 (528)
..++.++++++.++.. .-..+|-.++..-...-..+-.|-++.|..++.++. +.-+|..|+.++..++...+..+
T Consensus 73 ~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4788888888765541 111222222211111112222356677788887764 56789999999999998766666
Q ss_pred HHHHHcCcHHHHHHH-HccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHH
Q 009700 363 QAVIEANIIAPLVYL-LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPL 417 (528)
Q Consensus 363 ~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L 417 (528)
..+++ .+..++.. +...+..+-..-+..++.+-...--..++.+.+.|+++..
T Consensus 149 e~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 149 EEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 66654 34445444 3333322222222222222211112334555566766553
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.51 E-value=4 Score=33.95 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=61.8
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.++.......+.+.+++..|..++. ..++.++..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45667777888999999999999999999988877788888899999999887 467788888888888777544
No 287
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.26 E-value=20 Score=33.53 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChH
Q 009700 132 LQFEAAWALTNIASGTSEHTRVVIEHG--AVPKFVQLLG----SASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALM 203 (528)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~ 203 (528)
-+.-++..+.-++. ++.....+...+ +...+..++. +..+..+-.++++++|+....+ .+..+.... .+.
T Consensus 79 ~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 79 SRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSIL 156 (268)
T ss_dssp C-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHH
T ss_pred cchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHH
Confidence 35555555555444 444444443332 2333444332 2568888999999999987655 455555432 233
Q ss_pred HHHHhhccch---hhHHHHHHHHHhhhhcCCC-CCC-ChhhhHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhhccCChHH
Q 009700 204 PLLAQLNEHS---KLSMLRNATWTLSNFCRGK-PPA-PFDQVRPALAALQHLIF-S-SDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 204 ~Ll~ll~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
..+..+.... +..++..++..+.|++... ... .......++..+...+. . .|++....++-+++++...++..
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 3333332332 7788888899999987543 111 22223445666666433 2 58999999999999999766543
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.16 E-value=6 Score=37.40 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=48.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT-RVVIEHGAVPKFVQ----LLG--------SASDDVREQAVWAL 182 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~i~~~a~~~L 182 (528)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-. +|. .+...+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999987 9999999999999998443332 23566675554433 333 24456667777777
Q ss_pred HHhh
Q 009700 183 GNVA 186 (528)
Q Consensus 183 ~nl~ 186 (528)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7764
No 289
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.06 E-value=2.6 Score=35.13 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|.+.++.++..|+..|..+...-+.....++....++..|+.++....++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988876555667788888999999999884448999999998888876
No 290
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.60 E-value=3.9 Score=44.00 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
.+.++.++.-+|+++|--.....+ ..+|.+++-|.......++.+..-++.-+|... ..+....+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 367889999999999955443322 257888988877778888888888887777552 23457789999999
Q ss_pred hcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 251 IFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 251 l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
|..+++-|+..++..|.+|....- +--. .++-+++..|-+.++.++.-|=.+++.+....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~-----vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGI-----VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhh-----hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999876421 1111 24445555566678889999988888887543
No 291
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=49 Score=37.78 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---c---chhhHHHHHHHHHhhhhcCCC-CCCChhhh
Q 009700 168 GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---E---HSKLSMLRNATWTLSNFCRGK-PPAPFDQV 240 (528)
Q Consensus 168 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 240 (528)
..+..+++...+.++.++....-+ .++ +| .+.+.+++. . .....+.+.+..+|.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 346678888888888888744322 111 22 444444442 1 224567888888888888887 66777788
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHhhcc
Q 009700 241 RPALAALQHLIFS-SDEEVLTDACWALSYLSD 271 (528)
Q Consensus 241 ~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~ 271 (528)
.+++..+..+-.. .|..+--.|+..+..+++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 8889888877653 466666666555555543
No 292
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.14 E-value=31 Score=31.73 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVA-GDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..++|.++++++.++..+ -..+|-.. .+-+.. -..+..|-+..|..++.+.. +.-++..++.+|..+....+.
T Consensus 72 ~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~i-lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRI-LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHH-HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 457899999997654321 11122211 111111 11123455777777774333 566888999999999988765
Q ss_pred CChhhhHHHHHHHHHHhcCCCHH
Q 009700 235 APFDQVRPALAALQHLIFSSDEE 257 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~ 257 (528)
.+...+.-.-..+-..+..++..
T Consensus 147 ~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 147 SREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred CHHHHHHHHHHHHHHHhccCchH
Confidence 55544444444444445444443
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.69 E-value=3.4 Score=37.16 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHh-------cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH-HhcC
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIR-------AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV-IEHG 158 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g 158 (528)
.-|.-|+.+|.|+.-.+ .+.+.++. ..++..|+++|....++-.++-|+-.|.+++.++......+ .+.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45778899999887653 33333322 23677788888877668999999999999999877666544 4678
Q ss_pred ChHHHHHhhCC
Q 009700 159 AVPKFVQLLGS 169 (528)
Q Consensus 159 ~i~~L~~lL~~ 169 (528)
.|..|+.+++.
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 99999999975
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.46 E-value=4.1 Score=33.48 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=58.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChH-HHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ-LQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|-.+....+.+...++...+++..|+.++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999998888754555667777888999999988755333 88888888777665
No 295
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.30 E-value=6.8 Score=32.17 Aligned_cols=75 Identities=9% Similarity=-0.046 Sum_probs=61.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CChHHHHHHHHHHHHHHHhhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++..|..-|.++++.++..|+..|-.++.++...+...+.+..++..|..++.. .++.++..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455677778899999999999999999999888777777777888889898875 477888888888887776544
No 296
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.95 E-value=6.2 Score=32.40 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=58.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH--DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~ 145 (528)
+++..|.+.|+++++.++..|+..|..+....+.+....+.....+..|+.++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999888876444455555657788899999763 347899999988888776
No 297
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.77 E-value=17 Score=36.54 Aligned_cols=143 Identities=10% Similarity=0.113 Sum_probs=77.8
Q ss_pred CChHHHHHHhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 326 QGLPRLYQLLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 326 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
++-..|..+|...+ ++.+|...+.+|.-|--.+. +.-..++..++.++..++...|.-+..-+...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 34456777776543 57888888888776643221 11234677788888888888777665444333332211
Q ss_pred HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHH
Q 009700 403 EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIY 482 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~ 482 (528)
....-=....+-..+..+|+.+|+.--..++..+..+-+..-.. +...+..+..---|.++.|.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~----------------d~~tV~i~~~acf~~~~ki~ 154 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN----------------DSKTVNIITTACFSKVPKIL 154 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc----------------cchhHHHHHHHHhccCcHHH
Confidence 11110011123456677888888865555666665555543322 11112222222567778877
Q ss_pred HHHHHHH
Q 009700 483 EKAVKLL 489 (528)
Q Consensus 483 ~~a~~ii 489 (528)
-.+...+
T Consensus 155 vs~l~Ff 161 (616)
T KOG2229|consen 155 VSGLRFF 161 (616)
T ss_pred HhhhHHh
Confidence 6665533
No 298
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.69 E-value=12 Score=28.68 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ 165 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 165 (528)
++|..|+..+..-+... --....+. ..+++..|++.+..+. .-.+..++..+..++. ++.....+.+.|++..|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666665554333332 22233333 4667888888888887 5688889999999888 7777788888898888766
Q ss_pred hhCCCCHHHHHHHHHHH
Q 009700 166 LLGSASDDVREQAVWAL 182 (528)
Q Consensus 166 lL~~~~~~i~~~a~~~L 182 (528)
+=...++..+..+-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66555565555444333
No 299
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=75 Score=37.69 Aligned_cols=231 Identities=16% Similarity=0.101 Sum_probs=117.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+..++..|..++ +..+..+..+++.++..-++ ..++ .+....+++-|.+ .++-.|..-.-+++.+-......-.
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3555566666666 78888888888887762111 1111 1234555555555 5565665555566655422111101
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHHHHH---------
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVLTDA--------- 262 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a--------- 262 (528)
.-.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+.. .++...-
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 1111223556677775666779999999999888776533334444555555566654322 1221111
Q ss_pred ----HHHHHhhccCChH--HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc
Q 009700 263 ----CWALSYLSDGTND--KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT 336 (528)
Q Consensus 263 ----~~~l~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 336 (528)
..+++.=...+.. .+. ......+-...-++.++++-++..+..++-++-...+.+... .-++..+..+|.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence 1111111111110 111 111122333344456668888899999999887666543211 124455666665
Q ss_pred ccCchhHHHHHHHHHHHHh
Q 009700 337 QNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 337 ~~~~~~v~~~a~~~L~nl~ 355 (528)
++ ..-.|+....++..+.
T Consensus 1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred ch-hhhhhhhHHhhhhHHh
Confidence 55 4444444444444443
No 300
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.93 E-value=5.7 Score=32.85 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=59.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR-----HDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+++++.++..|+..|..+...-+......+...+++..|+.++.. ..++.|+...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999988887655566777788889999999963 1237899888888877765
No 301
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.31 E-value=74 Score=39.26 Aligned_cols=255 Identities=13% Similarity=0.063 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH---HH--hcCChHHHHH
Q 009700 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL---VL--SHGALMPLLA 207 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~---~~--~~g~i~~Ll~ 207 (528)
-..|.+.+.++-.........+ -..+...+...+++++..+...+..+....+.+++. .. ....+..+..
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~ 535 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFV-----QQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT 535 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence 4446666666655211111111 112344566678889988877766665333321110 00 1112333333
Q ss_pred hhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 208 QLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 208 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
+-..++++.++......+. . ...........+..+...+....-.++..+...+++++..++...-..+..-.+.
T Consensus 536 ~aia~~~~~i~~~v~~~l~---~--~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~ 610 (2341)
T KOG0891|consen 536 VAIADTDPDIRIRVLSSLN---E--RFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE 610 (2341)
T ss_pred HhccCCCcchhhhHHhhhc---c--chhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence 3333444444333332222 1 1111112233444455556666677888888888988887764433322222222
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
.+-.+..+.-..+...+..-+..+...........+ ...+..++..+..+ +..+.+.+..+++.||.-..+.....++
T Consensus 611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~ 688 (2341)
T KOG0891|consen 611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD 688 (2341)
T ss_pred HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc
Confidence 222222222222222232223322222222222222 24557788888888 8889999999999999744433434444
Q ss_pred cCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCC
Q 009700 368 ANIIAPLVYLLQHA-EFEVKKEASWAISNATSGG 400 (528)
Q Consensus 368 ~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~ 400 (528)
..++.+.+.+... ...-+..+.+++.++....
T Consensus 689 -~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 689 -ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred -hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 4566666666543 4566778889999987643
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=82.04 E-value=23 Score=37.98 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
+.-|+.+|.++|..+.+++-..+........+. . ++..|+.+.-..+. ..++.+|..+ .+.+.+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~-----l~~~l~~y~~~t~s---~~~~~il~~~---~~P~~K--- 69 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP--W-----LVNGLVDYYLSTNS---QRALEILVGV---QEPHDK--- 69 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--H-----HHHHHHHHHhhcCc---HHHHHHHHhc---CCccHH---
Confidence 456778888888888888777776555433211 1 24445554333221 1233333322 222112
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCH
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~ 402 (528)
.++..|-..+..+ ..|..++..|+.+....+.....+.+..+++.|+.+|... +..+...|+.+|.-+.-..+.
T Consensus 70 --~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 70 --HLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred --HHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 3445677777644 6788999999999998888888899999999999998765 677777888888877665443
Q ss_pred HHHHHHHHCCChHHHHhhcCC
Q 009700 403 EQIQFLVSQGCIKPLCDLLVC 423 (528)
Q Consensus 403 ~~~~~l~~~~~l~~L~~ll~~ 423 (528)
....+|-+ ++..+..++.+
T Consensus 145 ~l~~~L~~--Lf~If~Rl~~W 163 (668)
T PF04388_consen 145 SLGPHLPD--LFNIFGRLLSW 163 (668)
T ss_pred hhhHHHHH--HHHHHHHHHHc
Confidence 33344433 55566666643
No 303
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.91 E-value=33 Score=29.78 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=52.0
Q ss_pred CChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 326 QGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 326 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
-.++.+.+-|... +...+-.|...+..+... ..+.+-.++. .+++.|-..|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3566677777666 555666666666666654 5555555554 478888889999999999999999999955
No 304
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.65 E-value=9.7 Score=32.97 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred CcHHHHHHHHccCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 369 NIIAPLVYLLQHAEFEVKKEASWAISNATSG-GTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
-.+|.+++=|...+...+--|...+..+... +.......+-+ ++.+|-..|++.|+++...+|.+|..++..++...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq--LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ--LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 4678888888888888888888888888776 33333333333 78899999999999999999999999976655443
Q ss_pred hccCCcchhhHHHh
Q 009700 448 EAGSTTANVYSEMI 461 (528)
Q Consensus 448 ~~~~~~~~~~~~~l 461 (528)
.. .++|...+
T Consensus 116 ~a----LvPyyrqL 125 (183)
T PF10274_consen 116 EA----LVPYYRQL 125 (183)
T ss_pred HH----HHHHHHHH
Confidence 21 45555444
No 305
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.09 E-value=19 Score=34.10 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=37.9
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHh
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLL 335 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL 335 (528)
++|.++.++.+.++.++..++.++..+....+... ..+.+.|..+.+.+.+
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 78999999999999999999999999987654322 2355566555544443
No 306
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=80.93 E-value=49 Score=30.95 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=43.3
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 70 KLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.++.+..|...++.+|+..+ .....+... .+++..++|.|+..=. + +.+...++..|.+++.
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 45678899999998777665 333333211 2455677888777633 3 7899999999999987
No 307
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.39 E-value=32 Score=35.02 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=76.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-------ChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-------LPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~~L~~l~~ 145 (528)
-..++.+.+.+.++..+..|+..|+ . ++.++. ++|.|+.++..+- +-.+.......+..+..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~---T---DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLE---T---DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc---c---CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 3677888888899999999988886 2 334444 3888888887542 23455556666666666
Q ss_pred CChhhHHHHHhcCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLLGS----------ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
++...-...=.-++|.++.++-+ .+..+|+.|+..+..+|.+....-+. +...++..+.+.+
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKAL 348 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Confidence 54443332223467877776643 34678888888888887554432222 2223444444444
No 308
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.36 E-value=11 Score=30.98 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=59.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.++.......+.+.+++..|..++.... +.+...++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45567777889999999999999999999988888888888899999999887743 337777777776665543
No 309
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=79.49 E-value=29 Score=33.49 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHH-HhcC---CChhhHHH-HHHHHhHhh----cCCcchhHHHhccCCh
Q 009700 258 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLH---SSTTVLVP-ALRTVGNIV----TGDDTQTQCVIDNQGL 328 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~---~~~~v~~~-al~~L~~l~----~~~~~~~~~~~~~~~l 328 (528)
++...+..+.......++. +.+ ...+++.++. .|.+ ..+..|.+ ++.+++.++ .........+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~v-~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EEV-ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HHH-HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHH-HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 4455555555444433322 222 2336666665 3322 33333332 333333333 333333434443 466
Q ss_pred HHHHHHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC---
Q 009700 329 PRLYQLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIE---ANIIAPLVYLLQHAEFEVKKEASWAISNATSGG--- 400 (528)
Q Consensus 329 ~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--- 400 (528)
...+.++.... -|+.|..-...|.++...+....-.+-. .-++..++..+++.+.++...++.++..+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 77778886542 4788888888888887643332211100 124556677778889999999999998887543
Q ss_pred CHHHHHHHHHCCChHHHHhhc----CCCChHHHHHHHHHHHHHHHhhhh
Q 009700 401 TREQIQFLVSQGCIKPLCDLL----VCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll----~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+++....+.+.-.+..+...+ +.............|..++...+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 345555665554444444433 333333334445677777765443
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.19 E-value=55 Score=30.49 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=100.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhHHHHHHhcCChHHHHHhhccchh----hHHHHHHHHHhhh
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDS-------PSCRDLVLSHGALMPLLAQLNEHSK----LSMLRNATWTLSN 227 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~~~~~g~i~~Ll~ll~~~~~----~~~~~~a~~~L~~ 227 (528)
+.+.+++-|.+ ....+.++..|..++... .+.|-.+.-.+.+|.++..+ ++++ ......++..|+.
T Consensus 65 lq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 65 LQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred HHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHH
Confidence 33344444444 345566777777776432 11222222223455566655 3333 2445677788888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHH
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 307 (528)
+|...... .+..++....+--..+..+....++..|..-.- ++. +..++..++.+|.++-+.++..++.+
T Consensus 142 ~a~~~~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 88553222 122222222221112335555555555543221 111 11366778999999888999999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
|..+....+-... ...+++..+.++++++ ...+|..++-++..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9999876554432 5556888999999776 45566766666543
No 311
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=79.04 E-value=23 Score=33.06 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHHHhhhhchhcc-----CCcchhhHHHhhhcccHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCCc
Q 009700 424 PDPRIVTVCLEGLENILKIGEADKEAG-----STTANVYSEMIDECDGLDKIENLQSHDNN-EIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 424 ~~~~~~~~~l~~l~~i~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~l~~L~~~~~~-~v~~~a~~ii~~~~~~~~ 497 (528)
.|..+++.++..+.|++...+...... ....+.+...|.+.|+++.|..+..+.+. +-......|+.-+|-+.+
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 355688999999999998844321110 01145677888899999999999877633 333466777777777665
Q ss_pred c
Q 009700 498 D 498 (528)
Q Consensus 498 ~ 498 (528)
.
T Consensus 212 p 212 (266)
T PF04821_consen 212 P 212 (266)
T ss_pred H
Confidence 4
No 312
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.67 E-value=49 Score=36.17 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+..+...+.++++......+.++..+..-..-++.. .... ++.-..-.+..- ..+......+|..++.-+++....
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~-~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDE-LDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccC-cchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 677777777888877777777777776554222222 1111 111111112211 356677788999999988888877
Q ss_pred HHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
+.. .++...++.++-+++.++.+.|...|..+.... .| .+.+-.++ +..-........+.|..+....
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 775 578899999999999999999999999987422 22 22233333 2223445566777777776554
No 313
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.76 E-value=1.1e+02 Score=33.38 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=68.0
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhc
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEA 449 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 449 (528)
+...+...+..+++..-...+.++.++..-......+ ...-++.-..-.+..-..+...+..+|.++....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~------ 512 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFD------ 512 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 4455566666777777777788877776532100000 0001111111111111123333444445544443
Q ss_pred cCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 450 GSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 450 ~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
......++.+.+....+-.+.-|+++++|..|..++...|+.
T Consensus 513 ----~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 513 ----PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred ----HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 334678888889999999999999999999999999999974
No 314
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.74 E-value=37 Score=28.12 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=55.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhH---HHHHHHHHhhhhcCCC
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLS---MLRNATWTLSNFCRGK 232 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~---~~~~a~~~L~~l~~~~ 232 (528)
++..|.+-|.+.++.++..|+.+|-.+..++ +.++..+....++..|..++....... ++..+...+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999998776 567777777778888888885444333 7887777776655443
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.16 E-value=1.2e+02 Score=33.22 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC---CCCChhhhHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK---PPAPFDQVRPALAA 246 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~ 246 (528)
.+..+.-.++..|+.++.+.. +...+++.|++..|+..-..+..-.-...|++.|+.+-..- -......+..++..
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~ 443 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKL 443 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHH
Confidence 344455567777777776655 66777888888777765433222222334444444332110 01122334566666
Q ss_pred HHHHhcCCCHHHHHH------HHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--------CC-----------hhhH
Q 009700 247 LQHLIFSSDEEVLTD------ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--------SS-----------TTVL 301 (528)
Q Consensus 247 L~~ll~~~d~~v~~~------a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--------~~-----------~~v~ 301 (528)
-+.++......-+.+ +|+.+..+. +.+-..+.+.+|+.+++. .+ ....
T Consensus 444 ~~~l~~cs~~~~~~~~~~ff~~~f~frail-------~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~ 516 (1516)
T KOG1832|consen 444 AIELLDCSQDQARKNSALFFAAAFVFRAIL-------DAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMA 516 (1516)
T ss_pred HHHHHhcchhhccchHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhh
Confidence 677776543332222 222222222 112222455566655543 11 1112
Q ss_pred HHHHHHHhHhhcC-----CcchhHHHhccCChHHHHHHhcccC-----chhHHHHHHHHHHHHhcCCH-------HHHHH
Q 009700 302 VPALRTVGNIVTG-----DDTQTQCVIDNQGLPRLYQLLTQNY-----KKSIKKEACWTISNITAGSR-------SQIQA 364 (528)
Q Consensus 302 ~~al~~L~~l~~~-----~~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~-------~~~~~ 364 (528)
...|.++...... -+...+.-+..+..+..++-+..++ ....-.+.+|.+-.+....+ ....-
T Consensus 517 ~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aen 596 (1516)
T KOG1832|consen 517 FHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAEN 596 (1516)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHH
Confidence 2234444332211 1111112223333333333332221 12344566666665554333 22334
Q ss_pred HHHcCcHHHHHHHHccC--------ChHHHHHHHHHHHHhcCCCCHHHHHHHHH-------C-CChHHHHhhcC----CC
Q 009700 365 VIEANIIAPLVYLLQHA--------EFEVKKEASWAISNATSGGTREQIQFLVS-------Q-GCIKPLCDLLV----CP 424 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~-~~l~~L~~ll~----~~ 424 (528)
+.+.+.+..++.+.... ..++...|..+|+-+... |.....+.. . .++..+++.-. ..
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 55677788888776543 234556666666555442 222222221 1 23444444332 24
Q ss_pred ChHHHHHHHHHHHHHHHhhhhchhc---------c----------CC-----cchhhHHHhhhcccHHHHHHHhcCCCH-
Q 009700 425 DPRIVTVCLEGLENILKIGEADKEA---------G----------ST-----TANVYSEMIDECDGLDKIENLQSHDNN- 479 (528)
Q Consensus 425 ~~~~~~~~l~~l~~i~~~~~~~~~~---------~----------~~-----~~~~~~~~l~~~g~~~~l~~L~~~~~~- 479 (528)
||+++..+|.+|.+.....+..... + ++ ...+....+....|+..|.+|.+..+|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 8999999999998877654221100 0 01 122234556677899999999876654
Q ss_pred ----HHHHHHHHHHHHh
Q 009700 480 ----EIYEKAVKLLERY 492 (528)
Q Consensus 480 ----~v~~~a~~ii~~~ 492 (528)
-|+..|...+-.+
T Consensus 755 t~aD~IRalAc~~L~GL 771 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGL 771 (1516)
T ss_pred CcHHHHHHHHHHHHhcc
Confidence 4777777666544
No 316
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.82 E-value=31 Score=27.73 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=51.0
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhc-ccHHHHHHHhc--------CCCHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDEC-DGLDKIENLQS--------HDNNEIYE 483 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~l~~L~~--------~~~~~v~~ 483 (528)
+++.|..-|+..++.|...+|.+|..++..+... |...+.+. ..+..+..... ..+..|+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~ 108 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE 108 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence 4667888888888888888999999999887533 33333222 23333444433 23457999
Q ss_pred HHHHHHHHhcCCC
Q 009700 484 KAVKLLERYWVEE 496 (528)
Q Consensus 484 ~a~~ii~~~~~~~ 496 (528)
.|..+++-.|+.+
T Consensus 109 ~A~El~~~if~~~ 121 (122)
T cd03572 109 EAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999864
No 317
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.56 E-value=60 Score=31.61 Aligned_cols=216 Identities=18% Similarity=0.122 Sum_probs=105.0
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
..++..|..++..+.+.......+.++..-...- ..-+...++..+.+-+.+..+.+|..-+..++.+....+...
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3456667777765444555666666655544311 001112345667777777767799998888888875111000
Q ss_pred HHHHhcCChHHHHHhhcc---chhhHHH---HHHHHHhhhhcCCC-CCCCh-hhhHHH-----HHH-H--HHHhcC-CCH
Q 009700 194 DLVLSHGALMPLLAQLNE---HSKLSML---RNATWTLSNFCRGK-PPAPF-DQVRPA-----LAA-L--QHLIFS-SDE 256 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~~~~~-----l~~-L--~~ll~~-~d~ 256 (528)
..-.-..+++.|+..+.+ ++-...+ -.++.++..++... +.... ...... =|. | -+++.. .++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 111122356667766631 1111100 01111111111111 00000 000000 000 0 022222 345
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
+-....+.++..+..+.......-.....-..++.++-+. .+.+|..|+.++..+....+.. +...++..+...
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~ 252 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKW 252 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHH
Confidence 5555666666666544332211111123566788888887 8999999999999998877763 222344556666
Q ss_pred hcc
Q 009700 335 LTQ 337 (528)
Q Consensus 335 L~~ 337 (528)
|..
T Consensus 253 l~~ 255 (339)
T PF12074_consen 253 LSS 255 (339)
T ss_pred HHh
Confidence 643
No 318
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.04 E-value=7.4 Score=36.47 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcC--cHHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhhH-HHHHhc
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAG--VVPRFVEFLDRHD---LPQLQFEAAWALTNIASGTSEHT-RVVIEH 157 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~i~~Lv~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~ 157 (528)
..+..++.+++.+.|+... ......+.... .+...+..+.... +..++..++.++.|++....... ..=...
T Consensus 122 ~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 4567899999999999886 45555555322 2333333333331 37899999999999977211111 000001
Q ss_pred CChHHHHHhh-CC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcC
Q 009700 158 GAVPKFVQLL-GS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHG 200 (528)
Q Consensus 158 g~i~~L~~lL-~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g 200 (528)
..+..+...+ .. .+++....++.+||+++...+..+......|
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~ 244 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLD 244 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCT
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcC
Confidence 1355566633 33 6899999999999999977765555443333
No 319
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.15 E-value=35 Score=38.45 Aligned_cols=235 Identities=17% Similarity=0.205 Sum_probs=125.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHH--------HHHHhhcCCCChHHHHHHHHHHHHHh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVP--------RFVEFLDRHDLPQLQFEAAWALTNIA 144 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~--------~Lv~lL~~~~~~~v~~~a~~~L~~l~ 144 (528)
-+..|++.+.++..++|.-+..+++.++.......-...++.-.+. .+-++...+-..-++..++|+|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 3677888888999999999999999998875333222222221111 11122221112358888999998887
Q ss_pred cCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH--hcCChHHHHHhhccchhhHHHHHHH
Q 009700 145 SGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL--SHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 145 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
..-.+.. +. ..+..+.+++..+..+++.-.+..+-.... ..++.+. -..+++..+..| .+.+..++..+.
T Consensus 158 ~~~~~s~--~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDESL--IK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhHh--hH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 7322211 11 235666777766666665554444433221 0111111 011344445555 566777888887
Q ss_pred HHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCH-HH-HHHHHHHHHhhccCChHHHH----HHHHhCcHHHHHHHhcCC
Q 009700 223 WTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDE-EV-LTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLLHS 296 (528)
Q Consensus 223 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~-~v-~~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~ 296 (528)
.++.-.....+......+..++..+..++..-|. .- .......+..++... +... .-...|+++.+...+.+.
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHHH
Confidence 7777665543222333334444444444332222 00 011111222223222 1111 112247899999999988
Q ss_pred ChhhHHHHHHHHhHhhcCCc
Q 009700 297 STTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~ 316 (528)
=..++..++..+..+....+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 78888888888888876543
No 320
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.59 E-value=1.7e+02 Score=33.89 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=56.4
Q ss_pred cCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 325 NQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
.+++|.|..-|.+. +..+|..|...++.+.+....+.. =-...+....+.-+.+.+++||.++.....++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 37888888888888 999999999999999875444332 00234566667777788999999999999988875
No 321
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.49 E-value=1.7e+02 Score=37.50 Aligned_cols=160 Identities=12% Similarity=0.068 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh--Cc--HHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 239 QVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 239 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
...+++..++.-+.+++..|++.+...|.+++......+..+... .+ ++.+...+....-.++.-.+.++..++.-
T Consensus 1123 ~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l 1202 (3550)
T KOG0889|consen 1123 SAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSL 1202 (3550)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHc
Confidence 346677778888888889999999999988876542111111111 01 11111222222333344444444444433
Q ss_pred Ccchh---HHHh----------c---cCChHHHHHHhcccC---chhHHHHHHHHHHHHhcCCHHHHHH--HHHcCcHHH
Q 009700 315 DDTQT---QCVI----------D---NQGLPRLYQLLTQNY---KKSIKKEACWTISNITAGSRSQIQA--VIEANIIAP 373 (528)
Q Consensus 315 ~~~~~---~~~~----------~---~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~--l~~~~~i~~ 373 (528)
.+... ..+. + ..... +.+...... ...+|..+..+++......+-.... -...+++..
T Consensus 1203 ~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v 1281 (3550)
T KOG0889|consen 1203 GPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAV 1281 (3550)
T ss_pred CCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHH
Confidence 22110 0000 0 00011 111111110 1234566666666655422221111 113467888
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 374 LVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 374 L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+...+-...+++...+..++.+....
T Consensus 1282 ~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1282 FFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred HHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 88888888999999999999888774
No 322
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.45 E-value=1.2e+02 Score=32.01 Aligned_cols=296 Identities=11% Similarity=0.062 Sum_probs=142.3
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
++.+.+.|. +.|+..+..|=.+|+.+... .+. +....-+|..++.|--+..|..+|..+.++... .-
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-lp 74 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES--PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-LP 74 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-Cc
Confidence 455666555 78899999999999877432 222 333333445555467788888999998885431 11
Q ss_pred HHHhcCChHHHHHhhCCCCHH----HHHHHHHHHHHhhCCChh--HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDD----VREQAVWALGNVAGDSPS--CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~----i~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
......+-..++.+|....|+ +....+..++.+..-... .++...=.+.+..+.+.+ +..+.+--.-++.+|.
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHH
Confidence 111123446677777764443 334444444444422210 111111122455666666 4444443444555555
Q ss_pred hhcCCCCCCChhh-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH----HHHhcCCChhhH
Q 009700 227 NFCRGKPPAPFDQ-VRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL----VELLLHSSTTVL 301 (528)
Q Consensus 227 ~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L----~~lL~~~~~~v~ 301 (528)
.|..+-....... ....-.....+=.+.=-++..-+|..|.....-+- +.-...|++..+ ..++.-
T Consensus 154 qLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nl---nd~~q~~L~~~vL~L~l~Cl~F------ 224 (1082)
T KOG1410|consen 154 QLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNL---NDRAQLGLLMQVLKLNLNCLNF------ 224 (1082)
T ss_pred HHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCc---ccHhHhhHHHHHHHHHhhhccc------
Confidence 5544321000000 00000000000000112344445555554442111 000111222222 222210
Q ss_pred HHHHHHHhHhhcC----------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc------CCHHHHHHH
Q 009700 302 VPALRTVGNIVTG----------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA------GSRSQIQAV 365 (528)
Q Consensus 302 ~~al~~L~~l~~~----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l 365 (528)
..+|..+.. ....+..+.+...++.+.++..+- .+..-+.|..+|..+++ .+++...++
T Consensus 225 ----DfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeRa~yl 299 (1082)
T KOG1410|consen 225 ----DFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAERAKYL 299 (1082)
T ss_pred ----cccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111111111 111233456777888899999888 88888999999999986 233333222
Q ss_pred HHcCcHHHHHHHHccC----ChHHHHHHHHHHHHhcC
Q 009700 366 IEANIIAPLVYLLQHA----EFEVKKEASWAISNATS 398 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~nl~~ 398 (528)
. ..+.-..+++.++ |+.--.+-|..|+.+-.
T Consensus 300 ~--~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 300 Q--HLVEGVKRILENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred H--HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHh
Confidence 2 2455555666654 55666666666666544
No 323
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=73.19 E-value=1.3e+02 Score=31.64 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+.++++....+..+..++. --|.+.+.+.+++..+..-+.+. |+.+..++.||+.++.
T Consensus 204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 5677777777777766654 45778888899988888766553 4678888888888876
No 324
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=73.15 E-value=21 Score=28.34 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=51.2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHH-----h-cCCCHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENL-----Q-SHDNNEIYEKAV 486 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L-----~-~~~~~~v~~~a~ 486 (528)
++..|..-|.+.++.++..+|..|..+++.+... |...+.....+..+..+ . ...+..|+.++.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~ 107 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAI 107 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHH
Confidence 4566666778889999999999999999987543 55555555555544332 1 345889999999
Q ss_pred HHHHHhc
Q 009700 487 KLLERYW 493 (528)
Q Consensus 487 ~ii~~~~ 493 (528)
.+++.+.
T Consensus 108 ~l~~~w~ 114 (115)
T cd00197 108 ELVQLWA 114 (115)
T ss_pred HHHHHHh
Confidence 9998774
No 325
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.14 E-value=1.2e+02 Score=31.24 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
|+--++-++.+.+-..+. ++..+-.++..+ ++.+|+..-.+++-+...+|.. +++..|-+....++.
T Consensus 624 a~Lg~AliamGedig~eM-----vlRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~dl 690 (881)
T COG5110 624 ALLGCALIAMGEDIGSEM-----VLRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDGDL 690 (881)
T ss_pred HHhhhHHhhhcchhhHHH-----HHHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhccccch
Confidence 333334444444433332 234556667777 8889998888888887666642 477888888888999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 384 EVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
++..+++.+++-+-.+.....+..
T Consensus 691 ~v~~ntIfamGLiGAGT~NaRlaq 714 (881)
T COG5110 691 NVIINTIFAMGLIGAGTLNARLAQ 714 (881)
T ss_pred hHHHHHHHHhhccccCcchHHHHH
Confidence 999999999988877655444433
No 326
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.83 E-value=6.4 Score=32.66 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=55.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChH---HHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQ---LQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~---v~~~a~~~L~~l~~ 145 (528)
+++..|.+.|+++++.++..|+..|-.+....+......+....++..|..++.+..... |+..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457788888999999999999999988887753444556666778888898887544233 78888877777665
No 327
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=72.38 E-value=47 Score=31.57 Aligned_cols=79 Identities=11% Similarity=0.267 Sum_probs=62.7
Q ss_pred cCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCCCH-HHHHHHHHCCChHHHHhhcCCC---ChHHHHHHHHHHHHHHH
Q 009700 368 ANIIAPLVYLLQHA--EFEVKKEASWAISNATSGGTR-EQIQFLVSQGCIKPLCDLLVCP---DPRIVTVCLEGLENILK 441 (528)
Q Consensus 368 ~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~~~~~~l~~l~~i~~ 441 (528)
.|.+..+++.+... +...|-..+.++-.+..+.++ ....++.+.|+++.++..+-++ +..+.....+.|+.+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 57788888877654 567888999999999998877 4556788999999999977544 34588889999999998
Q ss_pred hhhhc
Q 009700 442 IGEAD 446 (528)
Q Consensus 442 ~~~~~ 446 (528)
.....
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 76543
No 328
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=72.12 E-value=57 Score=33.12 Aligned_cols=216 Identities=14% Similarity=0.200 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..|..|+.+|..+++.-..+....+.+ +.|+..|++.. ..-|..|+-++...+...........-....+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 467889999998888753444433322 26889999887 6777778888888877332221110001234666677
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChH-----HHHHhhc--cc--h---hhHHHHH-HHHHhhhhcCCCC
Q 009700 167 LGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALM-----PLLAQLN--EH--S---KLSMLRN-ATWTLSNFCRGKP 233 (528)
Q Consensus 167 L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~-----~Ll~ll~--~~--~---~~~~~~~-a~~~L~~l~~~~~ 233 (528)
|..+.+..-......+..+-.++..+-..+.+.|.++ .|-.... .. + ..+.... +...+..+...-+
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 7643322222233333444444444444445555522 2111111 00 0 1111111 1222222222221
Q ss_pred CCC-h---hhhH-------HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhH
Q 009700 234 PAP-F---DQVR-------PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVL 301 (528)
Q Consensus 234 ~~~-~---~~~~-------~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~ 301 (528)
... . ..+. ..+......-...+..|...++.++..+-.-++ ... .+|..|+.-++. .+..++
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~-KLn-----PiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPK-KLN-----PIIRPLMDSIKREENELLQ 330 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-Ccc-----HHHHHHHHHhhccccHHHH
Confidence 111 1 1111 111111111122355666666666666654432 222 256667777766 456777
Q ss_pred HHHHHHHhHhhc
Q 009700 302 VPALRTVGNIVT 313 (528)
Q Consensus 302 ~~al~~L~~l~~ 313 (528)
..++.+|+.+..
T Consensus 331 ~rsA~slA~Li~ 342 (441)
T PF12054_consen 331 QRSAESLARLIQ 342 (441)
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 329
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.21 E-value=1.6e+02 Score=32.05 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=146.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
..|=+.++++....+.++...+-++.... +...++++ .+=.|.+.+..++ -.++...+++...-- .....+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~---PfpifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g----~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY---PFPIFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSG----KHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC---CchhhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhcc----ccchhh
Confidence 44555677776667777777777776553 22233333 3445677777777 678887777766322 222222
Q ss_pred Hh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 155 IE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 155 ~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.. ...+..+.....+.++.-|..++..++.++.--| +......++..-..++++-=.+.++.+..+++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 21 2344555555667889999999999998865444 334456666554355555445677777777775431
Q ss_pred CCChhhhHHHHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhH
Q 009700 234 PAPFDQVRPALAALQHLIFSSD--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGN 310 (528)
Q Consensus 234 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~ 310 (528)
....++.-.+..++...+ +...-..+.+++.+..... ....+......++.. +..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 122233334444444433 3345556677777765422 111244555666644 444455566777777
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
++...-. .-.+-++.+.++++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 7753321 1134566888888855466778888888888874
No 330
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.15 E-value=1.1e+02 Score=31.73 Aligned_cols=172 Identities=15% Similarity=0.033 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhc--C--------CCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLD--R--------HDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.++...|-..|+++...- -+..++..|..+.. . +-++.+|...+..|+.-.. .. -.
T Consensus 251 ~~V~~~ae~~LKr~~~~~--------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----Aa--~~ 316 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSL--------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----AA--TS 316 (501)
T ss_pred chHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----HH--hC
Confidence 344445555555543321 12335666666655 2 1236777766666655321 00 00
Q ss_pred hcCChHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCChhHHHHHHhcCChHHHHHhhc-------cchhhHHHHHHHH
Q 009700 156 EHGAVPKFVQLLGSA--SDDVREQAVWAL---GNVAGDSPSCRDLVLSHGALMPLLAQLN-------EHSKLSMLRNATW 223 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~--~~~i~~~a~~~L---~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-------~~~~~~~~~~a~~ 223 (528)
....+..+..-|.+. +..++..++..+ .....+.+...-..+...+...+...+. ...+...+..+..
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 112233333345554 567888887777 5555444321111111111222222331 2346788999999
Q ss_pred HhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 224 TLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 224 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
+|+.|+...|..- ..-...+..|..-|..++++++..+-.+|+.++..
T Consensus 397 ~lG~L~~~~p~l~-~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 397 TLGLLAKRAPSLF-SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHccCcccc-cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999998865432 22356677777777788899988888888887653
No 331
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.96 E-value=1.4e+02 Score=31.42 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-------HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT-------RVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAG 187 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~ 187 (528)
=+..+|+.+++++ ++++..|+..+......+.... +.+.. -...|..+..+ .+++.+..++.+|+-+|-
T Consensus 49 dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 49 DLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 3788999999999 9999999999888776332211 11111 11223333333 456778888888888885
Q ss_pred CCh
Q 009700 188 DSP 190 (528)
Q Consensus 188 ~~~ 190 (528)
...
T Consensus 126 t~s 128 (878)
T KOG2005|consen 126 TMS 128 (878)
T ss_pred eec
Confidence 443
No 332
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=70.66 E-value=50 Score=37.34 Aligned_cols=174 Identities=12% Similarity=0.110 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc
Q 009700 215 LSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 215 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
..+++.++|+|..+..+- ........+..+..++..++.+++.-.+..+.+......+....+.. .+++..+..|.
T Consensus 143 apVre~caq~L~~~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 468889999999888663 22334566777888888777887777766666554332222232222 36777888888
Q ss_pred CCChhhHHHHHHHHhHhhcCCcch-hHHHhccCChHHHHHHhcccCchhHHHHHHH----HHHHHhcCCHHHHHHHH---
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQ-TQCVIDNQGLPRLYQLLTQNYKKSIKKEACW----TISNITAGSRSQIQAVI--- 366 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~----~L~nl~~~~~~~~~~l~--- 366 (528)
+.+..++..|..++.-++...... .+.+ ..++..+...+..- +. -..+.. .+..++... .+..+.
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~l-dd--l~~s~~si~~ll~~l~~~~--evl~l~~~~ 291 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLEL-DD--LSSSTASIMHLLDELCIEN--EVLDLFEQQ 291 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHh-hh--cchhhHHHHHHHHHHhhhH--HHHHHHHHh
Confidence 888889988888877776544211 1111 11233333333322 11 111111 222222211 122222
Q ss_pred --HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 367 --EANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 367 --~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
+.|++|.+...+.+.=..++..++..+..+...
T Consensus 292 n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 292 NLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 257888888888877677888888887777654
No 333
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.64 E-value=44 Score=32.63 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCC-------CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC----------CChhhHHH
Q 009700 241 RPALAALQHLIFSS-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH----------SSTTVLVP 303 (528)
Q Consensus 241 ~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~ 303 (528)
..++|.++.++... +.......+..+..|..++.=..+..+.. +++.++.++-. ..+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~-Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ-LIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH-HHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777666422 56677777777777777765444444443 77888777632 34689999
Q ss_pred HHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHHHHHHHHHHHH
Q 009700 304 ALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIKKEACWTISNI 354 (528)
Q Consensus 304 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl 354 (528)
|..+++.++........ -+...+...+.+.|.++..+ ....-|...|+.+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999965443221 12334455666666554223 2355555555544
No 334
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=70.48 E-value=53 Score=28.10 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcccC-----Cc---hhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH-hc
Q 009700 87 GLQLEATTQFRKLLSIER-----CP---PIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI-EH 157 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~-----~~---~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~ 157 (528)
..+.-++..+..++...+ .+ ....+++..+.+.|.+.+.+++ +.+-..+++++..+.. ..+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344555555555554431 12 4555667788899999988877 8899999999999886 2333322 22
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhHHHHHHhc
Q 009700 158 G-AVPKFVQ-LLGSAS--DDVREQAVWALGNVAGDSPSCRDLVLSH 199 (528)
Q Consensus 158 g-~i~~L~~-lL~~~~--~~i~~~a~~~L~nl~~~~~~~~~~~~~~ 199 (528)
+ .++.++. ++.++. ..-++.++.++..+|.+..-..+.....
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 2 3455554 666543 4688899999999998776655555443
No 335
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=69.91 E-value=84 Score=30.96 Aligned_cols=154 Identities=17% Similarity=0.099 Sum_probs=89.9
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc----------CCCHHHHHHHHHHHHhhccCC
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF----------SSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.++..|.+......+..++.++.-|+++............++.|+.+-. ..|..+...++.+|+|+.-++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3444553333445566677777777777643333334445555554432 235688999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCC-----ChhhHHHHHHHHhHhhcC-CcchhHHHhccCChHHHHHHhcccC--------
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHS-----STTVLVPALRTVGNIVTG-DDTQTQCVIDNQGLPRLYQLLTQNY-------- 339 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~-------- 339 (528)
+...+..........+.+.+... ...+...=++.|--+..- .+...+.+.+.++++.+.++|.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777777666666555554321 112222233333333322 2344556677888888888886421
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 009700 340 ------KKSIKKEACWTISNITAG 357 (528)
Q Consensus 340 ------~~~v~~~a~~~L~nl~~~ 357 (528)
+.....+++.++.|++.+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 113445677788888753
No 336
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=69.53 E-value=82 Score=28.02 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=88.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQA-VWALGNVAGDSPSCRDL 195 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a-~~~L~nl~~~~~~~~~~ 195 (528)
..+..++.++. .+.+..|+.++.......... .++.+-.++.. ++..+.+.. ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 44556677777 788888888876644311110 24555566655 566666665 445555532211
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
...+.+...+ .+++.-.++.++-++..+... .....++..+...+.+++.-++..+.|+|..++...++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2344455555 777777888887666655544 23345666677777888999999999999999998887
Q ss_pred HHHHHHHh
Q 009700 276 KIQAVIEA 283 (528)
Q Consensus 276 ~~~~~~~~ 283 (528)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665554
No 337
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=67.45 E-value=80 Score=30.81 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=63.8
Q ss_pred ChHHHHHhhccc-----h-hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC----------CCHHHHHHHHH
Q 009700 201 ALMPLLAQLNEH-----S-KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS----------SDEEVLTDACW 264 (528)
Q Consensus 201 ~i~~Ll~ll~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~ 264 (528)
.+|.++..+... . +.......+.++..|..++.-.....+..++|.++.++-. +...++..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666321 1 4666777888888888775444444557788888877632 23678888999
Q ss_pred HHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh--hhHHHHHHHHhHh
Q 009700 265 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST--TVLVPALRTVGNI 311 (528)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~al~~L~~l 311 (528)
.+..++......... +...+...+.+.+.++.. ....-|+..|+.+
T Consensus 291 ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 998888653322111 122344455555554332 2244455555544
No 338
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=67.11 E-value=1.2e+02 Score=29.15 Aligned_cols=156 Identities=9% Similarity=0.045 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH-Hhc----C----CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 217 MLRNATWTLSNFCRGKPPAPFDQVRPALAALQH-LIF----S----SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~----~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
+++..+..+.......+.. .......+|.|+. .|. + .++++..-....+..+...-.+....+.+. ++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 4445555555554443222 2233455555554 222 1 356676666666666655444455666665 778
Q ss_pred HHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhc----cCChHHHHHHhcccCchhHHHHHHHHHHHHhc----
Q 009700 288 RLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVID----NQGLPRLYQLLTQNYKKSIKKEACWTISNITA---- 356 (528)
Q Consensus 288 ~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---- 356 (528)
..+.++.. .-|+.+..-...|..+...+....-. ++ ..++..+.-.+++. +..+...++.++..+..
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~-lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ-LPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH-S-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHh
Confidence 88888865 35778887777777777643321100 11 12455677778888 89999999998888875
Q ss_pred CCHHHHHHHHHcCcHHHHHH
Q 009700 357 GSRSQIQAVIEANIIAPLVY 376 (528)
Q Consensus 357 ~~~~~~~~l~~~~~i~~L~~ 376 (528)
.+++....+.+.-.++.|..
T Consensus 199 ~~~~~~~~F~~~y~~~il~~ 218 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQD 218 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 24555666665444444433
No 339
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=66.88 E-value=1.6e+02 Score=30.46 Aligned_cols=148 Identities=14% Similarity=-0.004 Sum_probs=88.0
Q ss_pred chhHHHHHHHHH---HHHhcC-CHHH---HHHHHHcCcHHHHHH----HHccCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009700 340 KKSIKKEACWTI---SNITAG-SRSQ---IQAVIEANIIAPLVY----LLQHAEFEVKKEASWAISNATSGGTREQIQFL 408 (528)
Q Consensus 340 ~~~v~~~a~~~L---~nl~~~-~~~~---~~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 408 (528)
..+++..+...+ .....+ .+.. +...+..++.|.+-. --...+...|..+..+|+.++...+.-..
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--- 410 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--- 410 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc---
Confidence 456666666666 554443 3333 333344556665510 11234678999999999999986542211
Q ss_pred HHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHH
Q 009700 409 VSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKL 488 (528)
Q Consensus 409 ~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~i 488 (528)
-+-+++..|.+-|..++++++..+-++|..++......... ........+ ...+.....+....++..|.+-
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---~~~~~~~~~-----~~l~~~~~~~~~~~~R~~avk~ 482 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---EDEQKRLLL-----ELLLLSYIQSEVRSCRYAAVKY 482 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---hhHHHHHHH-----HHHHHhhccchhHHHHHHHHHH
Confidence 13457888888888899999999999999888765432110 000001111 1112222345556688888888
Q ss_pred HHHhcCCCcc
Q 009700 489 LERYWVEEED 498 (528)
Q Consensus 489 i~~~~~~~~~ 498 (528)
.+.+|..++-
T Consensus 483 an~~fpf~d~ 492 (501)
T PF13001_consen 483 ANACFPFSDV 492 (501)
T ss_pred HHHhCCccch
Confidence 9999886543
No 340
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=66.86 E-value=66 Score=25.89 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=55.9
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCCCCh--
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ-GCIKPLCDLLVCPDP-- 426 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~-- 426 (528)
=|.+++..++..... ++..|.+-|...++.|+..++.+|-.++..|++.+...+.++ ..|..+...-...|+
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 444454444444332 456788888888999999999999999999988777776643 344444444332332
Q ss_pred ------HHHHHHHHHHHHHH
Q 009700 427 ------RIVTVCLEGLENIL 440 (528)
Q Consensus 427 ------~~~~~~l~~l~~i~ 440 (528)
.|+..|-+++..|+
T Consensus 99 Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcchhHHHHHHHHHHHHHHh
Confidence 35666666665554
No 341
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=66.59 E-value=38 Score=34.62 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCcHHHHHHHHcc-CChHHHHHHHHHHHHhcCCC------------CHHHHHHHHHCCChHHHHhhcCC-C
Q 009700 359 RSQIQAVIEANIIAPLVYLLQH-AEFEVKKEASWAISNATSGG------------TREQIQFLVSQGCIKPLCDLLVC-P 424 (528)
Q Consensus 359 ~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~------------~~~~~~~l~~~~~l~~L~~ll~~-~ 424 (528)
...++.+.+.++|+.|+..|.. .+..++..|+..|+.++... +.+....|.+...+..|++.+=. .
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~ 131 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ 131 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC
Confidence 3445556689999999999973 36889999998888775421 23455666777777777765432 2
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 009700 425 DPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 425 ~~~~~~~~l~~l~~i~~~~ 443 (528)
....+..++..+..+++..
T Consensus 132 ~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 132 GGSSLVNGVSILIELIRKN 150 (475)
T ss_pred CcchHHHHHHHHHHHHHhc
Confidence 2444456666777777654
No 342
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=66.31 E-value=60 Score=26.93 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=56.1
Q ss_pred HHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH-HHhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009700 371 IAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP-LCDLLVC---PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 371 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~~~~~~l~~l~~i~~~~ 443 (528)
+..|..-|. +.++.++..|+..|-.++.+|.......+...+++.. |+.++.. .+..+...++..+.......
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 444555565 4588999999999999999998888888888899997 8998863 23477888888877766543
No 343
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.15 E-value=1.2e+02 Score=30.84 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHhhCCChh-HHHHHHhcCChH-HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh-hhhHHHHHHHH
Q 009700 172 DDVREQAVWALGNVAGDSPS-CRDLVLSHGALM-PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF-DQVRPALAALQ 248 (528)
Q Consensus 172 ~~i~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~-~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~ 248 (528)
...|..|+.+||.++..-+. .... ... .|+..| ++..-.-+..++.++...+........ .....+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 46788899999999855322 1111 233 467777 666666666677777777665421111 11345666777
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH-----HHHHHhc---CC--ChhhHHHHHHHHhHh----hcC
Q 009700 249 HLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP-----RLVELLL---HS--STTVLVPALRTVGNI----VTG 314 (528)
Q Consensus 249 ~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~-----~L~~lL~---~~--~~~v~~~al~~L~~l----~~~ 314 (528)
.+|..+....-.+....+..+-.........+.+.|.++ .|-...+ .. +.--...|-.+.+.. ...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 777754433333334444444444444555555555522 1111111 11 111112222222211 110
Q ss_pred ---Ccch--hHHHhcc-CChHHHHHHh----cccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-Ch
Q 009700 315 ---DDTQ--TQCVIDN-QGLPRLYQLL----TQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-EF 383 (528)
Q Consensus 315 ---~~~~--~~~~~~~-~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~ 383 (528)
.... .+.+-+. .-+...+... ..- +..|+..++.++..+-. -|+.. +-+|..|++-++.+ +.
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~-lP~KL-----nPiIrpLMdSIK~Een~ 327 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGG-LPKKL-----NPIIRPLMDSIKREENE 327 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-CCCCc-----cHHHHHHHHHhhccccH
Confidence 0000 0111000 0011111111 111 33444444455544422 22211 23677788777765 68
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC---CChHHH--HHHHHHHHHHHHhhhhchhc--cCCcchh
Q 009700 384 EVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC---PDPRIV--TVCLEGLENILKIGEADKEA--GSTTANV 456 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~--~~~l~~l~~i~~~~~~~~~~--~~~~~~~ 456 (528)
.+|..++.+|..++..+. ..+.-....+++-||.++-. ..|.+- ...-+.+..+-+........ .......
T Consensus 328 ~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~ 405 (441)
T PF12054_consen 328 LLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQ 405 (441)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhh
Confidence 899999999988865331 00000112345666666632 222221 11122222222211110000 0011223
Q ss_pred hHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 457 YSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 457 ~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
-...|.+-|+...|..|..+=.+++.++.-.+.
T Consensus 406 ~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 406 KEARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred hhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 355677888888888887766666666554443
No 344
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=66.12 E-value=5.9 Score=24.53 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHhhccCCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 009700 11 VRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKR 49 (528)
Q Consensus 11 ~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R 49 (528)
+|...||+..+..+..+||+ ...+.-|.+|-+.....|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~-~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRR-EFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHH-HHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHH-HHHHHHHHHhHHHHHhcc
Confidence 57788998545455554444 445666666666655544
No 345
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=65.47 E-value=7.2 Score=30.34 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHH
Q 009700 134 FEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVRE 176 (528)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~ 176 (528)
...+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445666777777 778888899999999999999998877644
No 346
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=65.40 E-value=1.3e+02 Score=28.84 Aligned_cols=171 Identities=12% Similarity=0.058 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcC-----------ChHHHHHhhC------CCCHHHHH
Q 009700 117 VPRFVEFLDRHD---LPQLQFEAAWALTNIASGTSEHTRVVIEHG-----------AVPKFVQLLG------SASDDVRE 176 (528)
Q Consensus 117 i~~Lv~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~i~~ 176 (528)
+..|+.++-..+ .-++|..|+.|+.....++++.+..+++.- ....|+..|- +.++--.-
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 444454443322 368999999999999999999888776421 1112333332 12222223
Q ss_pred HHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCC
Q 009700 177 QAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSD 255 (528)
Q Consensus 177 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d 255 (528)
.|+.+|..+..+++..|+....- + .............+..+...|+.-+. ..+
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V---~-----------------------~~~~~~ge~~vtliq~v~~lL~~~l~~~~d 169 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRV---T-----------------------EGDESSGEEPVTLIQTVSELLIASLRRNSD 169 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STTS--EEHHHHHHHHTTT----T--
T ss_pred HHHHHHHHHHhcCHHHHHHHHcc---c-----------------------CCCCCCCCCcccHHHHHHHHHHhhhhcCCc
Confidence 44555555555555544443321 0 00000011111111112222222222 335
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC---CChhhHHHHHHHHhHhhc
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH---SSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~ 313 (528)
+.++..-+..|+.-..+++..+..++.. ..++.|+..... .+.-++--++..||-+-.
T Consensus 170 ~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 170 PRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 6666665666655555566666666666 478888887533 334455556666665554
No 347
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=65.33 E-value=14 Score=24.55 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009700 458 SEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLERY 492 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~~ 492 (528)
.+.+.+.|.-..+..|..| ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5677888888999999988 9999999999999876
No 348
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=64.94 E-value=52 Score=32.28 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=56.2
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+...+..++...+-.|+.+.++.++.-|+..-.+|.++.+.-..+|..+. .++-..+++.+.....-.-....+.+|+.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 44455566677888999999999999999999999999875555554433 23334455555333333344556666676
Q ss_pred hcCCC
Q 009700 228 FCRGK 232 (528)
Q Consensus 228 l~~~~ 232 (528)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 66654
No 349
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=64.71 E-value=1.5e+02 Score=29.15 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
...-++.|...+.+...+-|...+. ++..-+.++ .+.+..+++.|..-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 4455666777777777666654443 456667777 7788889999999888888873 122233333333
Q ss_pred hc------------CCCHHHHHHHHHHHH-hhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 251 IF------------SSDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 251 l~------------~~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
|. ..|+.+++.++..|. .+..-.++....-++..++..+-..|.+-...-....+..|+++...
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~ 181 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL 181 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 32 246677777666554 33333444433334444555566666664444455556666666543
No 350
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=64.37 E-value=29 Score=25.13 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=30.6
Q ss_pred HHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 458 SEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
.+.+.+.+.-..+..|..|+|++|...|..++..|
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56777777778899999999999999999999876
No 351
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=62.09 E-value=63 Score=33.11 Aligned_cols=112 Identities=10% Similarity=0.147 Sum_probs=69.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcC---CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC---
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTG---DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG--- 357 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--- 357 (528)
++++.+++.+.. +.+..--+++++ +.. .....+.+.+.++++.|+.+|...++..++..|+.+|..|..-
T Consensus 21 ~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456666555543 334444444444 221 1233445567899999999998666888999999988887641
Q ss_pred ----------CHHHHHHHHHcCcHHHHHHHHcc-CChHHHHHHHHHHHHhcCC
Q 009700 358 ----------SRSQIQAVIEANIIAPLVYLLQH-AEFEVKKEASWAISNATSG 399 (528)
Q Consensus 358 ----------~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~ 399 (528)
.......+.....+..|+..+-. .....-..++.++..++..
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 13344556666678877776653 2244455566666666543
No 352
>PLN03205 ATR interacting protein; Provisional
Probab=61.97 E-value=1.7e+02 Score=28.82 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCc---HHHHHHH-hcCCChhhHHHHHHHHhHhhc
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGV---CPRLVEL-LLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~---l~~L~~l-L~~~~~~v~~~al~~L~~l~~ 313 (528)
..++..|+.+..-++..+...+++.|..+..+ +....+.--+.+. ++.+.+. ..+....++..|+.++..+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 44555566665555555666666555444321 1111111111222 2222222 234667788889888887776
Q ss_pred CCcch--hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------H---
Q 009700 314 GDDTQ--TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI---------------------E--- 367 (528)
Q Consensus 314 ~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~--- 367 (528)
.++.+ .+.+....+++.+.++|+......|+++|...+.-+.- +|.....+. .
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 55543 33445556788888999876567899998766554321 222111111 0
Q ss_pred cCcHHHHHHHHccC-----ChHHHHHHHHHHHHhcCCCC
Q 009700 368 ANIIAPLVYLLQHA-----EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 368 ~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~~ 401 (528)
..++.-|-+++.+. +.++++.|...|.-++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11344555555543 56788888888888877653
No 353
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.59 E-value=70 Score=31.35 Aligned_cols=132 Identities=11% Similarity=0.144 Sum_probs=88.6
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQ 363 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 363 (528)
-+.-|+..+++.+..++..|+..|-.+....+.... ..-..+++.+..+..+. +..+|.....++-.+... .++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 356688888999999999999999888766443322 12234667777788777 888999888888886542 333322
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL 421 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll 421 (528)
.++. =+++.+...|.+-.+.+|..+...|.-++....+....+... .+.-+.+++
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 2221 245555566667789999999999998888776666555443 344444433
No 354
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=61.45 E-value=45 Score=26.39 Aligned_cols=70 Identities=10% Similarity=-0.020 Sum_probs=51.6
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh-----c-CCCChHHHHHHHHHHHHH
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL-----L-VCPDPRIVTVCLEGLENI 439 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~~~~~~l~~l~~i 439 (528)
++..|..-|.+.++.++..|+..|-.++.+|++.....+.+..++..++.. . ...+..++..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666777888999999999999999999988888888777666665442 1 123566777777666543
No 355
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.97 E-value=43 Score=24.98 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred HCCChHHHHhhc-CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH---HHHhcCCCHHHHHHH
Q 009700 410 SQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI---ENLQSHDNNEIYEKA 485 (528)
Q Consensus 410 ~~~~l~~L~~ll-~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l---~~L~~~~~~~v~~~a 485 (528)
+..++.++..++ ...+.++++.+++++..++...... + ..|....+ .....++++++...|
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~--------------i-~SGW~~if~il~~aa~~~~e~lv~~a 79 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN--------------I-KSGWKVIFSILRAAAKDNDESLVRLA 79 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH--------------H-HhccHHHHHHHHHHHhCCCccHHHHH
Confidence 456788888885 4568899999999999999865322 2 34444444 444567788888888
Q ss_pred HHHHH
Q 009700 486 VKLLE 490 (528)
Q Consensus 486 ~~ii~ 490 (528)
..+++
T Consensus 80 f~~~~ 84 (86)
T PF09324_consen 80 FQIVQ 84 (86)
T ss_pred HHHHh
Confidence 88775
No 356
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.79 E-value=2.3e+02 Score=30.01 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHH----hCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc--C
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIE----AGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN--Q 326 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~ 326 (528)
.-..+.+..|+-+|..+..+..... .+++ ..++..++..+. .++.-+..++++|.|+..+. ...+.+... .
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s-~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~-~g~~~~~s~~~~ 631 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNS-LFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNP-AGRELFMSRLES 631 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhh-hhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCH-HHHHHHHHHHHH
Confidence 3455666667777766665543222 2222 124444555544 55667888999999999873 323222221 1
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-----ChHHHHHHHHHHHHhcCC
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-----EFEVKKEASWAISNATSG 399 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~ 399 (528)
++..+.+.-..+ +..++........|.+. ..++.--+.+..+.|...+... +.+..-..+.||++++..
T Consensus 632 i~~~~~~~~s~~-~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 632 ILDPVIEASSLS-NKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred Hhhhhhhhhccc-chhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 222222222222 44555555555555532 1111111234455555444332 333444556777887774
No 357
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.45 E-value=16 Score=27.23 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=44.0
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
...++.|+..++....+.++++..+.++..+..........-...++..+.....++++++...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3346788888876777899999999999998876432222222333444444444556667666665543
No 358
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=59.46 E-value=2e+02 Score=29.63 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=82.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------chhhHHHHHHHHHhhhhcCCCCCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------HSKLSMLRNATWTLSNFCRGKPPA 235 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~l~~~~~~~ 235 (528)
+.+.+-+.++..+..|+..|.. | +.... .++.++.++.. ..+..+..+.+..++.|..++.-.
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3344444666666666665543 2 11211 24555555532 235667788888888888875433
Q ss_pred ChhhhHHHHHHHHHHhcC----------CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHH
Q 009700 236 PFDQVRPALAALQHLIFS----------SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVP 303 (528)
Q Consensus 236 ~~~~~~~~l~~L~~ll~~----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~ 303 (528)
-...+..++|.++.++-+ +...++.-|+..+..++......... +...++..+.+.+.+. ......-
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 344557788888777642 22557777888888888765544443 3334666666666654 3344555
Q ss_pred HHHHHhHhhc
Q 009700 304 ALRTVGNIVT 313 (528)
Q Consensus 304 al~~L~~l~~ 313 (528)
|+..|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 5555554443
No 359
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.10 E-value=2.8e+02 Score=30.59 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccC------ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 241 RPALAALQHLIFSS-DEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 241 ~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
...++.++.++... +++++..+...|+.++.. ++.....+...+.+..|+..+-.+. ......+..+..+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~-~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG-TSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC-cchhhHHHHHHHHHH
Confidence 67888999888744 578888887777777654 3335555666667777776655422 122223333333332
Q ss_pred CCcchhHHHhccCChHHHHHHhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcC---cHHHHHHHHccCChHHHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEAN---IIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~ 387 (528)
-.......+ .... ...++.++. ++.+....+.++..- -....+.+.+.. .++.=...+..+=..-|.
T Consensus 268 ll~~~r~~~-~~~~---~~~i~~q~~~~~d~~~~~~~l~~~~p~---L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 268 LLNPRRDTV-ETNS---TTTILSQPPSERDPIVLNELLGAMEPR---LGDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred hcCcccccc-cccc---eeeeecCCccccCccchHHHHHHHHHH---HHHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 221111000 0000 012222221 344444444443332 222333332211 222222233333345677
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 009700 388 EASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC 423 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~ 423 (528)
..+..+..+....+....+.+...+.+..+.+++..
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 788888888877776666777777777666666654
No 360
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.53 E-value=2.6e+02 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc
Q 009700 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 294 (528)
+.....+-||++|+..+....+ +...--+..++.-++
T Consensus 690 EA~yR~l~AlgtL~t~~~~~~~-~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 690 EAIYRLLVALGTLMTVDASVIQ-LAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHHHHHHHhhccccHHHHH-HHHhcCHHHHHHHHH
Confidence 3444556677777766543333 222223444444444
No 361
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.44 E-value=65 Score=31.57 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=78.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT- 151 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~- 151 (528)
.+..++..+++-+..++..|+..+..++.. .+..-......+++.+..+..+.+ ..++......+-.+........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~ll~~~~~~i~D~~-~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYALLQKLRELILDDD-SLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHHHHHHhhhhhcCcc-ccHHHHHHHHHHHHHhhcchhhh
Confidence 578899999999999999999999999876 343333333456777777777766 6788877777777655222222
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~ 190 (528)
..++ .=.++.+...+.+..++++..++..|.-+....+
T Consensus 136 sp~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 136 SPMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred cchH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 1111 1134555555666778999999999888886654
No 362
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=56.36 E-value=54 Score=25.68 Aligned_cols=80 Identities=18% Similarity=0.082 Sum_probs=53.2
Q ss_pred CChHHHHHHhcccC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCC
Q 009700 326 QGLPRLYQLLTQNY---KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGG 400 (528)
Q Consensus 326 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 400 (528)
|++..+...+.+.. +..-|+.+..+++.+..-....+ ..+.|.++.+|.+. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666666552 23458899999988876322222 13567777777664 5779999999888888766
Q ss_pred CHHHHHHHHH
Q 009700 401 TREQIQFLVS 410 (528)
Q Consensus 401 ~~~~~~~l~~ 410 (528)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665544
No 363
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=55.64 E-value=52 Score=23.86 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=30.9
Q ss_pred HHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 458 SEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
...+.+.+.-..+..|..|++++|+..|..++..|
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56777888888899999999999999999999876
No 364
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.50 E-value=3.5e+02 Score=30.57 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=35.1
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 160 VPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 160 i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
+..|-. +|+..+.+++..++..+..|-...|++-..+.+.-.++.++.-+
T Consensus 468 vqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm 518 (2799)
T KOG1788|consen 468 VQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM 518 (2799)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh
Confidence 333433 35667788888888888888877777666666666677776666
No 365
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=52.74 E-value=2.3e+02 Score=27.55 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=53.1
Q ss_pred ChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHH
Q 009700 201 ALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQA 279 (528)
Q Consensus 201 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~ 279 (528)
++..++.++.+..++......+.++..=+..- ....-..++..+.+-+.+..+.++..-+..++..... .......
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 56667777767777777776666665433221 1122356778888888887777887777777766540 0111122
Q ss_pred HHHhCcHHHHHHHhc
Q 009700 280 VIEAGVCPRLVELLL 294 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~ 294 (528)
++. .+++.|...++
T Consensus 100 ~~~-~~~~~L~~~~~ 113 (339)
T PF12074_consen 100 FAE-PFLPKLLQSLK 113 (339)
T ss_pred HHH-HHHHHHHHHHH
Confidence 222 36677777664
No 366
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=52.69 E-value=64 Score=31.30 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=41.9
Q ss_pred chhHHHHhcC--cHHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHHHh------cCChHHHHH
Q 009700 106 PPIEEVIRAG--VVPRFVEFLDRHD--LPQLQFEAAWALTNIASGTSEHTRVVIE------HGAVPKFVQ 165 (528)
Q Consensus 106 ~~~~~~~~~g--~i~~Lv~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~L~~ 165 (528)
.....++..+ ++..|++++..++ ...++..|+.+|..++.......+.+-. .|+++.+++
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 3455566555 9999999998654 4689999999999999966555554322 355555544
No 367
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=52.21 E-value=60 Score=27.11 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=78.8
Q ss_pred ChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--ChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHH
Q 009700 147 TSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGD--SPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223 (528)
Q Consensus 147 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~ 223 (528)
+++.-+.+.+...+..+++++.. ....++.+.+..++-+... .+..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45566778888899999999887 5677777777777766532 22233345667777777776545667888888887
Q ss_pred HhhhhcCCCCCCChhh----hHHHHH---HHHHHhcCCCHHHHHHHHHHHHhh
Q 009700 224 TLSNFCRGKPPAPFDQ----VRPALA---ALQHLIFSSDEEVLTDACWALSYL 269 (528)
Q Consensus 224 ~L~~l~~~~~~~~~~~----~~~~l~---~L~~ll~~~d~~v~~~a~~~l~~l 269 (528)
.|..++..-....... ..+-.| .-+++..++|.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8877775432211111 122334 445667788888877766555554
No 368
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.00 E-value=18 Score=28.23 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHH
Q 009700 388 EASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVT 430 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~ 430 (528)
..+..+..++. .|+.+..+++.|++..|+.+|.+.+.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 44556666666 478899999999999999999999888753
No 369
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=51.91 E-value=2.5e+02 Score=27.83 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=84.9
Q ss_pred cHHHHHHHhcCCC-hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc---c------cCchhHHHHHHHHHHHH
Q 009700 285 VCPRLVELLLHSS-TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT---Q------NYKKSIKKEACWTISNI 354 (528)
Q Consensus 285 ~l~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~------~~~~~v~~~a~~~L~nl 354 (528)
+-..++..|.... ...+..++.++.-++...+... .+.....++.|+.+-. . ..+..+..++..+|+|+
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~-~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLE-PLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccc-cccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 3455666666554 3344455555555554332211 1222222233333221 1 11457899999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHHccC-C----hHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---C-
Q 009700 355 TAGSRSQIQAVIEANIIAPLVYLLQHA-E----FEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP---D- 425 (528)
Q Consensus 355 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~- 425 (528)
.-+++...+...+......+++.+... + ..++..=+..|.-+..-.+....+.+.+.++++.+.+.+++. |
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 988888888888877777776655322 1 122222223333232222233344455778899998888641 1
Q ss_pred --------hHHHHHHHHHHHHHHHh
Q 009700 426 --------PRIVTVCLEGLENILKI 442 (528)
Q Consensus 426 --------~~~~~~~l~~l~~i~~~ 442 (528)
|+-...++++|..++..
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNv 229 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNV 229 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhe
Confidence 24455667777666653
No 370
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=51.22 E-value=12 Score=33.40 Aligned_cols=44 Identities=30% Similarity=0.400 Sum_probs=35.9
Q ss_pred hHHhhccCCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhcc
Q 009700 10 EVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGL 53 (528)
Q Consensus 10 ~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~ 53 (528)
..|...||+-.+..|.|.||.+...++.|.+|-.-..+.|+...
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 47899999955667777777777999999999998888887643
No 371
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=50.56 E-value=53 Score=31.96 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=59.1
Q ss_pred CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHH
Q 009700 369 NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~ 441 (528)
.++..+.+-|...++.|...|+..+..++.+|.......+.+..+...|..++. ...+.+.+..-..+....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999998888888888889999999888 5667776665555555554
No 372
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.30 E-value=3.6e+02 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=57.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
.|..|..+-..+-+.++..++..+.++....|+.-. ..+..+++.| .+++..+...|...|.+|....|.....
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 456666666667789999999999999888776322 3567788888 7778888888888898888776665544
Q ss_pred hh
Q 009700 239 QV 240 (528)
Q Consensus 239 ~~ 240 (528)
++
T Consensus 379 vi 380 (988)
T KOG2038|consen 379 VI 380 (988)
T ss_pred hH
Confidence 43
No 373
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=50.07 E-value=1.5e+02 Score=24.60 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=62.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhH
Q 009700 380 HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYS 458 (528)
Q Consensus 380 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 458 (528)
.+|...-.+.|-.+.. -..+..+ ++..|..=|. +.++.++..+|..|..+++.++.. |.
T Consensus 16 ~~dw~~ileicD~In~-~~~~~k~---------a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~----------fh 75 (141)
T cd03565 16 SEDWGLNMEICDIINE-TEDGPKD---------AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR----------FH 75 (141)
T ss_pred CcCHHHHHHHHHHHhC-CCCcHHH---------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH----------HH
Confidence 3455555555555532 2222222 3444555455 468888888999999999887543 56
Q ss_pred HHhhhcccHHH-HHHHhc---CCCHHHHHHHHHHHHHhcCCC
Q 009700 459 EMIDECDGLDK-IENLQS---HDNNEIYEKAVKLLERYWVEE 496 (528)
Q Consensus 459 ~~l~~~g~~~~-l~~L~~---~~~~~v~~~a~~ii~~~~~~~ 496 (528)
..+..-++++. |..+.. ..+..|+.+...+|..+-..-
T Consensus 76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 66666677776 777754 245689999999999986543
No 374
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=4.9e+02 Score=30.58 Aligned_cols=105 Identities=10% Similarity=0.222 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHH----HHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF----VEFLDRHDLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L----v~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
+..+++.|...|+..+..|+..|..+....+.+.. .|++|.+ .++..+++ ..+|..+-.++..+...-..
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999876422221 2234333 34445565 89999999999988872222
Q ss_pred hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009700 150 HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNV 185 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl 185 (528)
......+ ..+|..+-.-.+.+..+...|...+...
T Consensus 117 ~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 117 KLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhh
Confidence 1111121 2333333222334445555555555444
No 375
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.69 E-value=60 Score=31.61 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=59.9
Q ss_pred CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhc-CCCHHHHHHHHHHHH
Q 009700 412 GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS-HDNNEIYEKAVKLLE 490 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~-~~~~~v~~~a~~ii~ 490 (528)
++++.+..-|++.|+.++..++..+..+...+++. |...+..-.+...|..|.. +..+.|+++-..++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~ 114 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVK 114 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 36788888899999999999999999888877543 5566666677788888876 888999999999998
Q ss_pred HhcC
Q 009700 491 RYWV 494 (528)
Q Consensus 491 ~~~~ 494 (528)
+|-+
T Consensus 115 eWse 118 (462)
T KOG2199|consen 115 EWSE 118 (462)
T ss_pred HHHH
Confidence 8865
No 376
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=5e+02 Score=30.52 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
+..+++-|...++..+..|+..++.+....+......+-........++..+. +..||...-.++..+...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45567777788899999999999999875543221110011222333455566 89999999999999876544443333
Q ss_pred HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 366 IEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
++ .++|...-.-.+.+..+-..|...+.....
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 33 245544433344455666666666665554
No 377
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.16 E-value=4.4e+02 Score=29.88 Aligned_cols=136 Identities=10% Similarity=0.103 Sum_probs=85.8
Q ss_pred HHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc
Q 009700 291 ELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS--RSQIQAVIEA 368 (528)
Q Consensus 291 ~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~ 368 (528)
+-..+-.+.||.-|+..||-.+...+. .+++...+..+--.|++. +..||..++.+|--|.... ......+. .
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-s 368 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFT-S 368 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHH-H
Confidence 333456789999999999999987765 567777888888888888 9999999999999997642 22232222 2
Q ss_pred CcHHHHHHHH-ccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH
Q 009700 369 NIIAPLVYLL-QHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN 438 (528)
Q Consensus 369 ~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~ 438 (528)
.+=..++++. ...+..|+...+..+.-....+ ++...-+..+..++-+.++++...+...+..
T Consensus 369 RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 369 RFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 3445566665 3335556555444433332211 1222235556667777777776666555543
No 378
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.06 E-value=74 Score=34.96 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=69.9
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhc---CCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS 360 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 360 (528)
.++.+-..+|.+.+-.+|..|+.++..... ..+...-.++ +...+.++..+... ++-+...|+.+|.+++..+.+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhh
Confidence 478888899999999999999998876542 2222221222 35677788888888 999999999999999987777
Q ss_pred HHHHHHHcCcHHHHHHHHcc
Q 009700 361 QIQAVIEANIIAPLVYLLQH 380 (528)
Q Consensus 361 ~~~~l~~~~~i~~L~~ll~~ 380 (528)
.+..=+-..++|.+-.++..
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66655555688887766543
No 379
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=48.94 E-value=56 Score=26.89 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHccCC----hHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 371 IAPLVYLLQHAE----FEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 371 i~~L~~ll~~~~----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
+..+.+++.... ..+...+..++.......+. ..+.+.++++.++.++..+ .+...|+++|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~---~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIPI---ELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H---HHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH---HHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 444444444332 67777888888887776543 3445566788888888443 3355666654
No 380
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=48.84 E-value=42 Score=27.92 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 175 REQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 175 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
+..|+..|+.+-++.. +.+|+.+| .+.+..+...++.+|++-.
T Consensus 80 ~~~Av~LLGtM~GGYN-----------V~~LI~~L-~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN-----------VQPLIDLL-KSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHHHTTS-SSTT-----------HHHHHHGG---G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHhhccCCCc-----------HHHHHHHH-cCCcHHHHHHHHHHHHhhH
Confidence 3456666666654432 56666666 5666666666666666543
No 381
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.81 E-value=23 Score=33.83 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh
Q 009700 136 AAWALTNIASGTSEHTRVVIEHGAVPKFVQL--LGSASDDVREQAVWALGNVAGDSPSCRDLVLS 198 (528)
Q Consensus 136 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l--L~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 198 (528)
..+.+++++...++..+.+.+.|+++.++.- +++.+|-+++..+.++.++..++.++++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4568899999999999999999999988764 45578999999999999999988877776543
No 382
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=48.14 E-value=1.7e+02 Score=24.93 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=52.0
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH-HhcccC-chhHHHHHHHHHHHHh
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ-LLTQNY-KKSIKKEACWTISNIT 355 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 355 (528)
..+++..+.+.+.+.+.+.+..+...+++++..+........+.-++ -++..+.. ++.+.. ...-|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 33455568888888888877899999999999998644332222222 23344444 666542 2356777888999988
Q ss_pred cCC
Q 009700 356 AGS 358 (528)
Q Consensus 356 ~~~ 358 (528)
...
T Consensus 146 ~~p 148 (168)
T PF12783_consen 146 KDP 148 (168)
T ss_pred hCh
Confidence 643
No 383
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.05 E-value=1.1e+02 Score=29.59 Aligned_cols=66 Identities=24% Similarity=0.417 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHG--AVPKFVQLLGSA---SDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
.++..|+.++..+.. .+.....++..+ ++.-|+.++..+ ...++..|+.+|..|+.+.+.+.+.+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 455666666665554 555666666666 888999998763 478999999999999988776655543
No 384
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.94 E-value=13 Score=20.68 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 009700 343 IKKEACWTISNIT 355 (528)
Q Consensus 343 v~~~a~~~L~nl~ 355 (528)
||..|+|+|+++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6889999999985
No 385
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.89 E-value=2e+02 Score=25.49 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHH-HHHHhHhhcCCcchhH
Q 009700 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPA-LRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 243 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a-l~~L~~l~~~~~~~~~ 320 (528)
....+..+..++..+.+..++.++.......+.. .++.+-..+.. +++.+.... ..+++.+....
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----- 118 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----- 118 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----
Confidence 3445556667777777777766665433221111 33445555554 456555544 44455544321
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
....+.+...+.++ ++-+|+.++.++....... ... .++..+...+.+++.-|+..+.|+|..+....
T Consensus 119 ----~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ----PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ----GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ----HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 23456778888888 8888888877665554431 111 13334445567788999999999999999874
Q ss_pred CHHHHHH
Q 009700 401 TREQIQF 407 (528)
Q Consensus 401 ~~~~~~~ 407 (528)
......+
T Consensus 187 ~~~v~~~ 193 (213)
T PF08713_consen 187 PDEVLEF 193 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 386
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=47.80 E-value=90 Score=24.42 Aligned_cols=80 Identities=21% Similarity=0.135 Sum_probs=53.3
Q ss_pred CChHHHHHHhcc---cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--ChHHHHHHHHHHHHhcCCC
Q 009700 326 QGLPRLYQLLTQ---NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EFEVKKEASWAISNATSGG 400 (528)
Q Consensus 326 ~~l~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~ 400 (528)
|++..+...+.+ ..+...|+.+...++.+..-....+. .+.|.++.+|.+. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455556666655 22667889999999998763333332 3566677777654 4589999988888888766
Q ss_pred CHHHHHHHHH
Q 009700 401 TREQIQFLVS 410 (528)
Q Consensus 401 ~~~~~~~l~~ 410 (528)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666555443
No 387
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=47.46 E-value=64 Score=26.51 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 242 PALAALQHLIFSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 242 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
.++..+.+.+.... .++...++.++.......+ ...+...++++.+.++|.++ ..+..|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 34444444444322 6778888888887766433 34566667888898888544 4577777765
No 388
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=47.11 E-value=47 Score=27.65 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 343 IKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 343 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
-+..|...|+.+..|. -|..|+++|.+.+..+...|+.+|.+....-+
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 3455666666664432 27789999999999999999999998776443
No 389
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.87 E-value=4.7e+02 Score=28.96 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.+.+.+...++.++.++....++.++.++..+|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 344556668999999997777888999998888888776
No 390
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=44.82 E-value=3.2e+02 Score=26.97 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG 357 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 357 (528)
.-..-|...+.+.-...++.....++ .-+.+..+. +..+|+.|..-|--+|.+
T Consensus 39 k~k~lasq~ip~~fk~fp~la~~a~d-----a~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLADEAID-----AQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhhhHHHH-----hhhcccccc-chhhHHHHHhccchhccC
Confidence 34556677777777766665544443 456677777 888999998888888765
No 391
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.54 E-value=99 Score=31.47 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=68.7
Q ss_pred HccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhh
Q 009700 378 LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVY 457 (528)
Q Consensus 378 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~ 457 (528)
+..+|..+-.+.|-.|..- .++.+ .++..|..-+.+.++.++..+|..|..+++.+++. |
T Consensus 14 l~~pDWa~NleIcD~IN~~-~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~----------f 73 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINST-EGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS----------F 73 (470)
T ss_pred ccCccHHHHHHHHHHHhcC-ccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH----------H
Confidence 3445555555555544332 22222 24666667788888888888999888888877653 6
Q ss_pred HHHhhhcccHHHHHHHh-cC-CCHHHHHHHHHHHHHhcCCCcc
Q 009700 458 SEMIDECDGLDKIENLQ-SH-DNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~-~~-~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
...+.+.++++.+..+- ++ .+..|++++..+|+.|...-.+
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 66677777777766553 66 7889999999999998765443
No 392
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=44.26 E-value=3e+02 Score=26.46 Aligned_cols=144 Identities=8% Similarity=0.048 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHh-----------CcHHHHHHHhc------CCChhhHHHHHHHHhHhhcCCcc
Q 009700 255 DEEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVCPRLVELLL------HSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 255 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
.-.++..|+.++.....++++....+++. .....|+..|- ..++--..-|+.++..+...++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45677888888877777666555444432 01112444444 22333344677788888877766
Q ss_pred hhHHHhcc------------CChHHHHHHhcc----cCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CcHHHHHHHHcc
Q 009700 318 QTQCVIDN------------QGLPRLYQLLTQ----NYKKSIKKEACWTISNITAGSRSQIQAVIEA-NIIAPLVYLLQH 380 (528)
Q Consensus 318 ~~~~~~~~------------~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~ 380 (528)
..+.+..- ..++.+..+|.. ..++.++..-+..|+-...+++..+..++.. ..++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 55444321 135556666543 3267777777777777778899999999965 479999987532
Q ss_pred ---CChHHHHHHHHHHHHhcC
Q 009700 381 ---AEFEVKKEASWAISNATS 398 (528)
Q Consensus 381 ---~~~~v~~~a~~aL~nl~~ 398 (528)
.+.-|+--++..|+-+..
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 256677777766665544
No 393
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=44.22 E-value=1.1e+02 Score=21.86 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 220 NATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 220 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
..+|+.+.|--. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+..++.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 345566666543 3333334455666666666677899999999999999888877777766654443
No 394
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=43.46 E-value=88 Score=26.16 Aligned_cols=126 Identities=10% Similarity=0.122 Sum_probs=82.4
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCC--cchhHHHhccCChHHHHHHhcccCchhHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGD--DTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEAC 348 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~ 348 (528)
++++..+.+.+..++..+++++.. ....++...+.+++-+...- +.....++..+.+..++..=-+-.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 345577888888999999999988 56778888899888887543 223334566666666655433322556666666
Q ss_pred HHHHHHhc-CCHHHHHHHHH--cCcHHHHHH---HHccCChHHHHHHHHHHHHhc
Q 009700 349 WTISNITA-GSRSQIQAVIE--ANIIAPLVY---LLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 349 ~~L~nl~~-~~~~~~~~l~~--~~~i~~L~~---ll~~~~~~v~~~a~~aL~nl~ 397 (528)
..|-.++- -++..++.+++ .+-+|.+.+ .+.++|.-+|..+-..+.|+.
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 66666664 35555555553 456776654 456778888877776666653
No 395
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=43.44 E-value=38 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=12.8
Q ss_pred CCCChHHHHHh-HHHHHHHHHH
Q 009700 18 TGVDADEARRR-REDNLVEIRK 38 (528)
Q Consensus 18 ~~~~~~~~r~~-r~~~~~~lRk 38 (528)
+..|++|+|+| |++....+|+
T Consensus 9 pk~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 9 PKMDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 36899998863 4444444443
No 396
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=43.33 E-value=73 Score=28.38 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhh
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDL 420 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l 420 (528)
..+...++..|..++.++.+....+.+. ++.++..+.......-..+..++..+..+ +++.+..+.+. .+..++.+
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHH
Confidence 3567889999999999988877777653 44333333332212223456677777774 45555555443 38888888
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhh
Q 009700 421 LVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 421 l~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+.....+. ..++.|..++..++
T Consensus 151 l~~~gr~~--~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 151 LRKHGRQP--RYLDFLSSLCVCNG 172 (207)
T ss_dssp ------------------------
T ss_pred HHHcCCCh--HHHHHHhhhcccCC
Confidence 87633222 35666666666443
No 397
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.25 E-value=1.2e+02 Score=33.53 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=66.0
Q ss_pred hHHHHHhhccchhhHHHHHHHHHhhhh---cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHH
Q 009700 202 LMPLLAQLNEHSKLSMLRNATWTLSNF---CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQ 278 (528)
Q Consensus 202 i~~Ll~ll~~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~ 278 (528)
+..-..+| .+.+..++-.++.+|+.- ....++.-...+....|.++..+...|+-+...|+.++.+++...++.+.
T Consensus 805 l~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 805 LGRGIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 33444455 677777887777776632 22223444456678889999999999999999999999999998877666
Q ss_pred HHHHhCcHHHHHHHhcC
Q 009700 279 AVIEAGVCPRLVELLLH 295 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~ 295 (528)
.-+-..++|.+-.++.+
T Consensus 884 sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55545577777665543
No 398
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=42.97 E-value=3.1e+02 Score=26.22 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=57.4
Q ss_pred ccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHH-HHH-HHHHcCcHHHHHHHHccC---ChHHHHHHHHHHHHhc
Q 009700 324 DNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRS-QIQ-AVIEANIIAPLVYLLQHA---EFEVKKEASWAISNAT 397 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~-~~~-~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~ 397 (528)
+.|++..+++.+...+ +...|-..+.++-.+..+.+. .-+ .+.+.|+++.++..+-++ +..+.+.+.-.|+.+.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3477888888776543 567787888888888876544 344 555899999999887655 3468888999999999
Q ss_pred CCC
Q 009700 398 SGG 400 (528)
Q Consensus 398 ~~~ 400 (528)
...
T Consensus 173 K~n 175 (303)
T PF12463_consen 173 KFN 175 (303)
T ss_pred CCC
Confidence 865
No 399
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.64 E-value=18 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=25.8
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWT 350 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 350 (528)
+|+.++..++.. +-...+...+..-|.++ ++.||+.|..+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 455666555432 22234566777888888 89999988765
No 400
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=1.5e+02 Score=30.25 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=57.8
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 441 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~ 441 (528)
++..|-+-+.+..+.++..|+..|--++.+|...+-..+.+.+++.-++.+.+.. +..++..+|..|...-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 4455666788888899999999999999988888877888999999998888765 66788888877766544
No 401
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.83 E-value=5.1e+02 Score=28.18 Aligned_cols=144 Identities=9% Similarity=0.085 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH-------HC--
Q 009700 342 SIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV-------SQ-- 411 (528)
Q Consensus 342 ~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-------~~-- 411 (528)
+...++..++-.+.-. .-....++ ...-+-.|...+.-..+.+...++..++.++..+.....+.+. +.
T Consensus 207 k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 3445556666555431 22222222 2223555566666667778888888887777655332222221 11
Q ss_pred -CChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 412 -GCIKPLCDLLVCP-DPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 412 -~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
.-+.++++.|... +..+...+...|..+.....+..- --.+...+.++|.-+.|..+....|.. ...+.+++
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf-----RlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlkvf 359 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF-----RLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLKVF 359 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH-----HHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHHHH
Confidence 2255677777765 444444444433333332222211 112344556789899999998775444 45556655
Q ss_pred HHh
Q 009700 490 ERY 492 (528)
Q Consensus 490 ~~~ 492 (528)
+..
T Consensus 360 dE~ 362 (1102)
T KOG1924|consen 360 DEH 362 (1102)
T ss_pred hhh
Confidence 543
No 402
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.33 E-value=1.1e+02 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC---------ChHHHHHhhCCC
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG---------AVPKFVQLLGSA 170 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---------~i~~L~~lL~~~ 170 (528)
+++.|+.-|.+++ +++...|+.+|...+... .+...++... +-+.++.+|+.+
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~ 70 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVSLRPSLDHLGDIGSPLLLRFLSTP 70 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHHcCcHHHHHHHcCHHHHHHHHcch
No 403
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=40.16 E-value=55 Score=18.35 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHH
Q 009700 342 SIKKEACWTISNI 354 (528)
Q Consensus 342 ~v~~~a~~~L~nl 354 (528)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5799999999998
No 404
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=39.88 E-value=4.4e+02 Score=27.13 Aligned_cols=276 Identities=16% Similarity=0.144 Sum_probs=128.8
Q ss_pred HHHHHHHhc-CCCHH-HHHHHHHHHHHHhcccCCchhH---HHH--------hcCcHHHHHHhhcCCCChHHHHHHHHHH
Q 009700 74 IPSMVQGVL-SENSG-LQLEATTQFRKLLSIERCPPIE---EVI--------RAGVVPRFVEFLDRHDLPQLQFEAAWAL 140 (528)
Q Consensus 74 l~~l~~~l~-s~~~~-~~~~a~~~l~~l~~~~~~~~~~---~~~--------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L 140 (528)
+|..++.+- .+.|. .+..|+.-+-.+...++ ..++ +.+ -..+|..+.++++.+....+|..|+|.|
T Consensus 44 l~~w~ki~laeg~ptm~~laa~~GlvaLvgse~-~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wlL 122 (589)
T PF11229_consen 44 LPAWIKIVLAEGCPTMQRLAALNGLVALVGSEG-DLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWLL 122 (589)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhhchhheecccc-ceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHHH
Confidence 566565444 34454 45555555555544321 1111 111 1346778888887665578999999999
Q ss_pred HHHhcCC----------hhhHHHHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCC---ChhHHHHHHhc
Q 009700 141 TNIASGT----------SEHTRVVIEHGAVPKFVQLLGS--------ASDDVREQAVWALGNVAGD---SPSCRDLVLSH 199 (528)
Q Consensus 141 ~~l~~~~----------~~~~~~i~~~g~i~~L~~lL~~--------~~~~i~~~a~~~L~nl~~~---~~~~~~~~~~~ 199 (528)
+.+--.+ |..-.++-+..++...+.++-. -.+.....++.-+...... .|-+-..
T Consensus 123 GhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPVNWaa---- 198 (589)
T PF11229_consen 123 GHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPVNWAA---- 198 (589)
T ss_pred HHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCccHHH----
Confidence 9874321 1111222333444455554422 1234444444444433211 1211111
Q ss_pred CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CChHHHH
Q 009700 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD-GTNDKIQ 278 (528)
Q Consensus 200 g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~ 278 (528)
.+.+|+++ +..++++..|+..-..=+..........-.-+.|.++.-+ +...+.+.+..+..... .+++.++
T Consensus 199 -lLsPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sL---s~~tk~~L~~Sl~~wmkhVsedqiQ 271 (589)
T PF11229_consen 199 -LLSPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSL---SVNTKKYLFESLSLWMKHVSEDQIQ 271 (589)
T ss_pred -HhhHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhh---hHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 23444443 3357777777765444443321111111122233333332 33444444444444333 3455666
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhc--cCChHHHHHHhccc---CchhHHHHHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVID--NQGLPRLYQLLTQN---YKKSIKKEACWTISN 353 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~---~~~~v~~~a~~~L~n 353 (528)
.+++.-++..+-..-...++.+...++.-|..-.... .-.+.... +.....+.++|-+. .+-+.-...+.+|+.
T Consensus 272 ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP-~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSE 350 (589)
T PF11229_consen 272 AFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLP-SPAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSE 350 (589)
T ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhh
Confidence 6666433333332223356777888888777644332 21222222 34455566666222 033444455667777
Q ss_pred HhcCCHHHH
Q 009700 354 ITAGSRSQI 362 (528)
Q Consensus 354 l~~~~~~~~ 362 (528)
++....+.+
T Consensus 351 Mtd~eidrI 359 (589)
T PF11229_consen 351 MTDTEIDRI 359 (589)
T ss_pred cCHHHHHHH
Confidence 654333333
No 405
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=39.71 E-value=4.4e+02 Score=27.16 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=38.4
Q ss_pred CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 369 NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 369 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
.+|-.+.+.....|......+..++.+++. ...+..++ ++..|.-+|..+..+-++.++..+
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLin---q~VahEIv---~Leil~lLLe~PTddSvevaI~fl 299 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLIN---QQVAHEIV---ALEILTLLLERPTDDSVEVAIAFL 299 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHhcCCCCchHHHHHHHH
Confidence 345555566666777777788888888776 33344443 367777777776555555554433
No 406
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=39.68 E-value=1.5e+02 Score=25.46 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH
Q 009700 213 SKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 292 (528)
...+++..|..++..+...... ......++..+..-|.. +.+++.-++..+..++...+.....-++ .+++.+-..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~--~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLS--RIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCS--SS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHH
Confidence 3468999999999988765322 12245667777777776 8999999999999999887755444333 467777777
Q ss_pred hcCC------------ChhhHHHHHHHHhHh
Q 009700 293 LLHS------------STTVLVPALRTVGNI 311 (528)
Q Consensus 293 L~~~------------~~~v~~~al~~L~~l 311 (528)
|... ..+....+++++..+
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 6431 123455566666666
No 407
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=39.61 E-value=1.7e+02 Score=22.96 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHH
Q 009700 254 SDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQ 333 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 333 (528)
+.+.+..-..|++.+.... . .++..+...+....+.-+.++++.+-.++..........+...+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~~a-----~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA-----K-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 4566777777887775211 1 25566667777777778889999999888765544333444444555555
Q ss_pred HhcccCchhHHHHHHH
Q 009700 334 LLTQNYKKSIKKEACW 349 (528)
Q Consensus 334 lL~~~~~~~v~~~a~~ 349 (528)
..... ++.+|.....
T Consensus 87 ~~~~~-~~~~r~kl~r 101 (114)
T cd03562 87 AYEKV-DEKTRKKLER 101 (114)
T ss_pred HHHhC-CHHHHHHHHH
Confidence 55554 5666554333
No 408
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.09 E-value=98 Score=24.91 Aligned_cols=95 Identities=21% Similarity=0.187 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhc---CCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHH
Q 009700 384 EVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLL---VCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEM 460 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~ 460 (528)
..-...+.-|+..+... ..+.. ++..|..-| +..++.++-.+|..|..++..|... +...
T Consensus 18 gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------~~~~ 80 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------FVDE 80 (125)
T ss_dssp S--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH----------HHHH
T ss_pred CcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH----------HHHH
Confidence 34444555666666532 33333 345666666 5567788888999999999988653 3333
Q ss_pred hh-hcccHHHHHHHhc-C-----CCHHHHHHHHHHHHHhcCC
Q 009700 461 ID-ECDGLDKIENLQS-H-----DNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 461 l~-~~g~~~~l~~L~~-~-----~~~~v~~~a~~ii~~~~~~ 495 (528)
+. ....+..+..++. + ....|+++|..+++-.+++
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 32 2222333333322 1 1135999999999877653
No 409
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.17 E-value=2.8e+02 Score=29.78 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=50.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChh
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVA-GDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFD 238 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 238 (528)
+.+++.-|++....+...|+.+|.--. ...|.+|..+...|++..+++.+.+........-+..+|.+|.... .....
T Consensus 334 ~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d-~lnmd 412 (865)
T KOG2152|consen 334 LEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRD-KLNMD 412 (865)
T ss_pred HHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhh-hhccc
Confidence 344445554432333333333333221 2357899999999999999999966665555555555666554432 11111
Q ss_pred hhHHHHHHHHHHhc
Q 009700 239 QVRPALAALQHLIF 252 (528)
Q Consensus 239 ~~~~~l~~L~~ll~ 252 (528)
.-...+..++++|.
T Consensus 413 ldf~Slelmi~LL~ 426 (865)
T KOG2152|consen 413 LDFLSLELMIHLLR 426 (865)
T ss_pred ccchhHHHHHHHHh
Confidence 11233455555554
No 410
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.08 E-value=2e+02 Score=22.80 Aligned_cols=70 Identities=19% Similarity=0.091 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhh-HHHHHHHHhHhhcCC
Q 009700 240 VRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTV-LVPALRTVGNIVTGD 315 (528)
Q Consensus 240 ~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v-~~~al~~L~~l~~~~ 315 (528)
+..++|.+.+.+. +..++.+..+...++.++...+ -... ++..++..+ .+....- ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567899999998 6788999999999999987543 1122 333333332 2322222 477888888888543
No 411
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.68 E-value=2.6e+02 Score=32.88 Aligned_cols=198 Identities=12% Similarity=0.052 Sum_probs=109.9
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---cchhhHHHHHHHH-
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---EHSKLSMLRNATW- 223 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~- 223 (528)
.+.+..+++.|.+..+..-+.+.++.+|..+.|++.-.-.+-....+...+.-.+..++.+.. .++++.+...+..
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 344447788899999999999999999999988877665443331122222222333333332 1222222222211
Q ss_pred --HhhhhcCCCCCCChhhh-----------HHHHHHHHHHhcCCCHH---HHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 224 --TLSNFCRGKPPAPFDQV-----------RPALAALQHLIFSSDEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 224 --~L~~l~~~~~~~~~~~~-----------~~~l~~L~~ll~~~d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
-.+.++..+.......+ ...+|.+..++.+...+ .++.....+.......+ ..+.....+.+.
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~-D~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCP-DYQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCch-hhhHHhhcCcce
Confidence 12333333311111111 23355666666655433 34444444444443443 345556666777
Q ss_pred HHHHHhcCC--ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHH
Q 009700 288 RLVELLLHS--STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKE 346 (528)
Q Consensus 288 ~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~ 346 (528)
.++....++ +...+.-.+.+|++-+.........+-..|+..++..++.++. ++..++.
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~ 1649 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKA 1649 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhh
Confidence 777777663 3334456777788777766666666777899999999998874 3444444
No 412
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=36.22 E-value=2.4e+02 Score=23.31 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 331 LYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 331 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+++-|..+ ...+++.|.++|-+ .+.. ..+++.+++.+..++...|.+..+.+-.++.
T Consensus 13 ~L~~L~aS-~qSi~kaa~fAlk~--~~~~--------edL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 13 LLRRLNAS-QQSIQKAAQFALKN--RDME--------EDLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred HHHHcchh-HHHHHHHHHHHHHc--cccH--------HHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 34444444 56788888888887 3222 2467888999999999999999888877654
No 413
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.60 E-value=1.2e+03 Score=30.82 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=48.6
Q ss_pred hHHHHHHHHhHhhcCCcchhH--HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 009700 300 VLVPALRTVGNIVTGDDTQTQ--CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL 377 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~~~~--~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 377 (528)
.+..|+..++......+.... .-...+++..+.+.|... .+++...+...+......++..-...++.+.=|.|..+
T Consensus 1249 Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1249 LRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred chhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 466677777666544443211 122346777888888877 88888888888888777655544555555444555544
Q ss_pred H
Q 009700 378 L 378 (528)
Q Consensus 378 l 378 (528)
-
T Consensus 1328 ~ 1328 (3550)
T KOG0889|consen 1328 S 1328 (3550)
T ss_pred h
Confidence 3
No 414
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.73 E-value=25 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=23.6
Q ss_pred hHHhhccCC-CCChHHHHHhHHHHHHHHHH
Q 009700 10 EVRKKSYKT-GVDADEARRRREDNLVEIRK 38 (528)
Q Consensus 10 ~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk 38 (528)
-+|-..|++ ..|+.|.||||-+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 478889999 88999999999877765544
No 415
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=34.36 E-value=5.8e+02 Score=26.90 Aligned_cols=109 Identities=10% Similarity=0.018 Sum_probs=73.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--HHHH
Q 009700 287 PRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS--QIQA 364 (528)
Q Consensus 287 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~ 364 (528)
..+++-..+-++.++..|...++..+..-|. .++.-.++...--.|++. +..+|.....++-.++...|. .+..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3455666667888999999888888876665 344444666666777777 889999999999999985443 3333
Q ss_pred HHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
+++ .+-..+++++..+..-||..+...++.+...|
T Consensus 354 f~e-RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg 388 (740)
T COG5537 354 FVE-RFKDRILEFLRTDSDCVRICSIKSLCYLRILG 388 (740)
T ss_pred HHH-HHHHHHHHHHhhccchhhHHHHHHHHHHHHhc
Confidence 332 34455666665554448888777777665543
No 416
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.72 E-value=3.2e+02 Score=23.29 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=48.7
Q ss_pred CChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 200 GALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 200 g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
|-+...+..+..-.|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 33444454444446677777777666654433 2233445578899999999999998888888888877654
No 417
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.56 E-value=88 Score=29.74 Aligned_cols=56 Identities=29% Similarity=0.416 Sum_probs=42.4
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--------------hhHHHHHhcCChHHHHHhhC
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--------------EHTRVVIEHGAVPKFVQLLG 168 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~i~~~g~i~~L~~lL~ 168 (528)
.+...+..+++-|.+++ ...+..|+.+|.-++.|.- .+...+.+.|+++.|..+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34556888888898887 8899999999999998752 23344567788888887775
No 418
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.30 E-value=2.7e+02 Score=22.12 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=52.1
Q ss_pred cHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCC--HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 370 IIAPLVYLLQ-HAEFEVKKEASWAISNATSGGT--REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 370 ~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
++|.+.+.+. +..++.+..+...++.++...+ ++....+ ++.++........ ...++-++..++...+..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l-----~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~ 79 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNAL-----MESILKNWTQETV--QRQALICLIVLCQSQENV 79 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHH-----HHHHHhccccchh--HHHHHHHHHHHHHccccc
Confidence 6788888888 6678999999999998887543 2332222 2233332222222 366777777777544222
Q ss_pred hhccCCcchhhHHHhhhcccHHHHHHH
Q 009700 447 KEAGSTTANVYSEMIDECDGLDKIENL 473 (528)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~g~~~~l~~L 473 (528)
... +...+.....-.+..+.|..+
T Consensus 80 ~~l---p~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 80 DSL---PRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred ccC---CHHHHHHHHcCccHHHHHHHH
Confidence 211 122333333333455555555
No 419
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.71 E-value=2.4e+02 Score=24.56 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 287 PRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 287 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
+.+.....+++.-++..++-++....... .... .+++.+-.++.+. +.-|++...|+|..++...++.+..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 56777888888888888877776655431 1111 2344555556666 889999999999999988777766665
Q ss_pred H
Q 009700 367 E 367 (528)
Q Consensus 367 ~ 367 (528)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 420
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=30.04 E-value=1.8e+02 Score=19.83 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=34.5
Q ss_pred hHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCCcc
Q 009700 457 YSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 457 ~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~~~~~~~~ 498 (528)
....+.+.|+...|..+. ..++++|.+.+..++.-+..+|++
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e 53 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPE 53 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 467788999999999885 566899999999999887776555
No 421
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.87 E-value=5.9e+02 Score=28.96 Aligned_cols=135 Identities=11% Similarity=0.009 Sum_probs=80.8
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hHHHHHHh
Q 009700 122 EFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP---SCRDLVLS 198 (528)
Q Consensus 122 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~ 198 (528)
+--.+-. ++++..++..|+-.... ....+++...+.++--.|.+.+..||..++.+|-.+..... ..+...-
T Consensus 294 HRYRDV~-~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFts- 368 (1048)
T KOG2011|consen 294 HRYRDVD-PDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTS- 368 (1048)
T ss_pred eecccCc-hHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHH-
Confidence 3334445 89999998888887763 33467777788888888999999999999999999986532 2211111
Q ss_pred cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009700 199 HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALS 267 (528)
Q Consensus 199 ~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~ 267 (528)
.+=..++.+...+.+..|+...+..+..+.... .....-+..+..++.+.+..++..+...+.
T Consensus 369 -RFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 369 -RFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred -HHHHHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 122334444434445566555554444332221 011223344555666666666666655554
No 422
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.48 E-value=2.6e+02 Score=33.26 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
.....++...-.++.+.++.++.-+......+....+...+. .++..|+..+.+++..-...|+.+|..++..++.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qq----eVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQ----EVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHH----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
....... ++..+++.+..- +..=.+....+++.++-.. .....-+...+.-.+-+.|.+.++..++..+-+...++
T Consensus 507 ~l~~fa~--~l~giLD~l~~L-s~~qiR~lf~il~~La~~~-~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 507 ELQPFAT--FLKGILDYLDNL-SLQQIRKLFDILCTLAFSD-SSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HHHHTHH--HHHGGGGGGGG---HHHHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCC-cccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
No 423
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.45 E-value=4.3e+02 Score=23.97 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCCh------------------hhHHHHHHHHhHhhcCCcc
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSST------------------TVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------------------~v~~~al~~L~~l~~~~~~ 317 (528)
......+|..+..|...+ +....+...++++.+.+.|..-++ .....=...||.++.....
T Consensus 78 ~~y~~vGc~L~~~Ll~~~-eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSP-EGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHcCc-HHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 445555666666666653 344455566777777777654211 1222235667777664443
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
.+.+-+.+++..+..+........+.+ -+++++=-+.+...+. .|-..|.+++..+|..|...|..++
T Consensus 157 -l~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 -LKLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred -HHHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 446777899999999997752333222 2455542222222222 2345678888899999988887664
No 424
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=29.33 E-value=5.5e+02 Score=25.15 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=78.9
Q ss_pred HHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hcccC----chhHHHHHHHHHH
Q 009700 279 AVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LTQNY----KKSIKKEACWTIS 352 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~----~~~v~~~a~~~L~ 352 (528)
.+.+.++++.++.+-.. ..+.++..+++.+..+....+.. .+....+..++.++ +.... ...+.++-...+.
T Consensus 4 yll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 4 YLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 45556677778777655 44668888888888888755443 23444566667777 53321 2335566666666
Q ss_pred HHhc---CCHHHHHHHHHcC--------------------------cHHHHHHHHccCChHHHHHHHHHHHHhcCCC--C
Q 009700 353 NITA---GSRSQIQAVIEAN--------------------------IIAPLVYLLQHAEFEVKKEASWAISNATSGG--T 401 (528)
Q Consensus 353 nl~~---~~~~~~~~l~~~~--------------------------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--~ 401 (528)
.+|. .+|.....+++.+ ++..|+..+.+. ..+-..|..+|.-++... +
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~ 160 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASED 160 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCC
Confidence 6664 5666666555422 345666666666 466666766666665544 5
Q ss_pred HHHHHHHHH
Q 009700 402 REQIQFLVS 410 (528)
Q Consensus 402 ~~~~~~l~~ 410 (528)
+....++++
T Consensus 161 ~~~~~~i~~ 169 (353)
T PF10257_consen 161 PALAQYIVE 169 (353)
T ss_pred cHHHHHHHH
Confidence 555667766
No 425
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.29 E-value=4.5e+02 Score=24.06 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=62.2
Q ss_pred hcccCchhHHHHHHHHHHHHhc------CCHHHHHHHHH--cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH---
Q 009700 335 LTQNYKKSIKKEACWTISNITA------GSRSQIQAVIE--ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE--- 403 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~--- 403 (528)
|.+. ++.+.+.+..+.+++-. .........++ ..+-..++.++.+.++.+|..|...+..++...++.
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4444 66677776666666532 11111122221 223345566677778888888888776654211000
Q ss_pred -----------------------HHHHHH--HCCChHHHHhhcCCCC--hHHHHHHHHHHHHHHHhhhh
Q 009700 404 -----------------------QIQFLV--SQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 404 -----------------------~~~~l~--~~~~l~~L~~ll~~~~--~~~~~~~l~~l~~i~~~~~~ 445 (528)
....|. ..+++..|+..+.... +.+...++.+|..|++.-+.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~ 149 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ 149 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH
Confidence 011222 1357888888887754 77888889999998887654
No 426
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.11 E-value=2.5e+02 Score=22.04 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=44.5
Q ss_pred cCcHHHHHHhhcCCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009700 114 AGVVPRFVEFLDRHD---LPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAG 187 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~ 187 (528)
-|++..+.+.+.+.+ ...-+..++.++..+..-... .+ ..+.|.+...|.+ ..++++..|+.++..+..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~---~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK---HI--SSALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 356666666665543 345678888887777662211 11 1356777777766 677899999888887753
No 427
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.02 E-value=7.9e+02 Score=26.84 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF 163 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 163 (528)
.=+.++..++..+..++... ++.- ..++..||+-|.+++ ..+...|...|.+|...+|..+..++ .-+
T Consensus 316 ~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vvi-----~EI 383 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVVI-----DEI 383 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeehH-----HHH
Confidence 33578889999999998863 2222 335778888888888 68888999999999887776554433 334
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHhh
Q 009700 164 VQLLGSAS--DDVREQAVWALGNVA 186 (528)
Q Consensus 164 ~~lL~~~~--~~i~~~a~~~L~nl~ 186 (528)
..++-.++ ....-.|+.+|..+.
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhH
Confidence 44443333 334445566666655
No 428
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.03 E-value=1.6e+02 Score=22.22 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=42.9
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
.+++.+|..|...|+.++....... .-+...+...+.+.+.++. ......-|...|..+ .++.++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~vr~ 83 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEAVRA 83 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHHHHH
Confidence 3567899999999999996544322 1223356667777777552 445677777777777 3444443
No 429
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=27.62 E-value=2.7e+02 Score=21.74 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=44.4
Q ss_pred CcHHHHHHhhcC---CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009700 115 GVVPRFVEFLDR---HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS--ASDDVREQAVWALGNVAG 187 (528)
Q Consensus 115 g~i~~Lv~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~ 187 (528)
|++..+-+.+.+ ..+...+..++..+..+..-...... .+.|.+...|++ ..++++..|+.+...+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 556666666655 22367788888888888763223222 345777777765 556888888888877763
No 430
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.86 E-value=4.5e+02 Score=27.64 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
++-.+..++.+.+...++-.++..++.+..- .+...+.-+-..+....-.+|.+.++-+...|+.|++.++...+
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 4445666675554666888888999888751 22222111111123333345678899999999999999998654
No 431
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=25.71 E-value=4.1e+02 Score=22.62 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 242 PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 242 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
+++..+.++ +|..+..+.+.++.+......=.... -..++|.+..+|.+..+.....++..+..+...
T Consensus 32 ~ai~~~~~~---~D~svlvD~L~vl~~~~~~~~~tLd~--c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 32 GAIEYAVRM---NDPSVLVDVLSVLNQSLKPEKWTLDL--CVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred HHHHHHHhc---CCchHHHHHHHHHHHhcCcCcccHHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 344444443 78888888888887554433211111 123789999999999998888898888877653
No 432
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.93 E-value=6e+02 Score=24.12 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=53.6
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccc-----hhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 166 LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEH-----SKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 166 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
++...+.+.++.|+.+|.+=++ ..+ .+|.++..+..+ .+.......+...+.|..+...-....+
T Consensus 206 l~dEs~~~~r~aAl~sLr~dsG----lhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~ 275 (450)
T COG5095 206 LLDESDEQTRDAALESLRNDSG----LHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL 275 (450)
T ss_pred HHHHHHHHHHHHHHHHhccCcc----HHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH
Confidence 3455677888888877665322 222 255555555321 2445555666666667666432223344
Q ss_pred HHHHHHHHHHhc-----CCCH-----HHHHHHHHHHHhhccCCh
Q 009700 241 RPALAALQHLIF-----SSDE-----EVLTDACWALSYLSDGTN 274 (528)
Q Consensus 241 ~~~l~~L~~ll~-----~~d~-----~v~~~a~~~l~~l~~~~~ 274 (528)
..++|.++.++- +.+. .++.-|+..+.+++..-+
T Consensus 276 hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~ 319 (450)
T COG5095 276 HQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFS 319 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 566666555442 2222 256666667777665533
No 433
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.95 E-value=1.1e+02 Score=29.18 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=55.6
Q ss_pred cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC------CH-------HHHHHHHHCCChHHHHhhcCC--------C--
Q 009700 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGG------TR-------EQIQFLVSQGCIKPLCDLLVC--------P-- 424 (528)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~------~~-------~~~~~l~~~~~l~~L~~ll~~--------~-- 424 (528)
...+..+++-|...+...|..|+.+|.-++.|. .. .....+.+.|+++.|..+|.. .
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 346677888888899999999999999998764 12 234456678999999998841 0
Q ss_pred ----------ChHHHHHHHHHHHHHHHhhhhc
Q 009700 425 ----------DPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 425 ----------~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
+..-...++.+++.++......
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 1134556777777777655443
No 434
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=23.94 E-value=4.7e+02 Score=22.53 Aligned_cols=155 Identities=10% Similarity=0.086 Sum_probs=82.2
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009700 329 PRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFL 408 (528)
Q Consensus 329 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 408 (528)
+.|+..|... .++......|+.+.+.-...+ ...+.|..+-|.+++.+....-...|...+..+...-..+.+..+
T Consensus 6 plLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Confidence 4566666544 233334444444433211111 112567778888877664434346778888777732245555555
Q ss_pred HHCCChHHHHhhcCCCC-hHHH---HHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCH-HHHH
Q 009700 409 VSQGCIKPLCDLLVCPD-PRIV---TVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN-EIYE 483 (528)
Q Consensus 409 ~~~~~l~~L~~ll~~~~-~~~~---~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~-~v~~ 483 (528)
.++ +++.+...|..+. .++. .+...++...+..-+.... ...+...+.. .++.+..+.+.+.+ ..-.
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-----~~~vk~L~~~--mv~Sv~elV~~g~E~~~l~ 153 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-----VDLVKELLPK--MVKSVKELVERGMEVGFLR 153 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-----HHHHHHHHHH--HHHHHHHHHHcccHHHHHH
Confidence 554 6777777666542 2222 2222333434433322211 1122333322 46778888888888 7778
Q ss_pred HHHHHHHHhcCC
Q 009700 484 KAVKLLERYWVE 495 (528)
Q Consensus 484 ~a~~ii~~~~~~ 495 (528)
+|..-+++++..
T Consensus 154 rgl~~~e~~v~~ 165 (174)
T PF04510_consen 154 RGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHH
Confidence 888888877653
No 435
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=23.53 E-value=1.2e+02 Score=32.92 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=65.8
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
..+.....+-.. +..+..+=|.+....-..-|+.+.-.|...+.++. .++-.+++.++..+|.+. .+..+..+|.++
T Consensus 45 snp~KL~KI~~y-L~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf 121 (819)
T KOG1877|consen 45 SNPSKLPKIGTY-LEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLESN-NDEMQILGTNSF 121 (819)
T ss_pred hChhhhhHHHHH-HHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC-CCceeeehhhHH
Confidence 344455544443 56667776776665555566666667766666666 566668999999999988 777777776666
Q ss_pred HHHh---cCCHHHHHHHHHcCcHHHHHHHHcc
Q 009700 352 SNIT---AGSRSQIQAVIEANIIAPLVYLLQH 380 (528)
Q Consensus 352 ~nl~---~~~~~~~~~l~~~~~i~~L~~ll~~ 380 (528)
..++ ...+..... -.++++.+..+..+
T Consensus 122 ~~F~~i~~d~~sy~~~--yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 122 VKFANIEEDGPSYHRN--YDFFISKFSSLCHE 151 (819)
T ss_pred HHHHhhcccCchhhhh--hHHHHHHHHHHhhc
Confidence 6555 333222211 13567777777665
No 436
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.28 E-value=1.7e+02 Score=25.95 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch-hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 172 DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS-KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 172 ~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
.++...|...|..+|.+++.++..+.+. ++.++..+.... ... ..+..++..+..+++..........+..++.+
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~--~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYG--LGALDVLTEIFRDNPELCESISEEHIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TT--HHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCC--chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHH
Confidence 4677888899999998888777766552 332222221111 111 13344555555554333333333445555555
Q ss_pred hcC
Q 009700 251 IFS 253 (528)
Q Consensus 251 l~~ 253 (528)
+..
T Consensus 151 l~~ 153 (207)
T PF01365_consen 151 LRK 153 (207)
T ss_dssp ---
T ss_pred HHH
Confidence 544
No 437
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=9.5e+02 Score=25.61 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.7
Q ss_pred ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcc
Q 009700 297 STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ 337 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 337 (528)
--..|..+++.|-+|+..+...+ .+.+.|+++|.+
T Consensus 441 y~PLRlhcir~Li~Ls~ssg~fI------Pi~~ll~Eml~~ 475 (661)
T KOG2256|consen 441 YYPLRLHCIRSLISLSRSSGTFI------PLSPLLVEMLKS 475 (661)
T ss_pred chhHHHHHHHHHHHHHhhcCcee------ecHHHHHHHHHH
Confidence 34688999999999998776544 245566666643
No 438
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.59 E-value=9.3e+02 Score=25.48 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh--hhhHHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF--DQVRPALAAL 247 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L 247 (528)
-++.+|..|...|+--+..-|.+ +..-.++.+.-..| .+.+..++.....++..|+...|.... ......-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchHH---HHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 45788888988888888777753 33333556555566 777889999999999999998776652 2224444556
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhc
Q 009700 248 QHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 248 ~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
+.++..+-.-|+..++..+.++.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 66666554447777777776654
No 439
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=4.4e+02 Score=26.77 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHH
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLV 196 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 196 (528)
+..|+.-|..+..+++--.-+..|..++..+++.... ....|+.++...+..+|..++.++-.+...++.+|..+
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~~-----~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~li 82 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVRL-----SSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLI 82 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHHH-----HHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455555544332566666677788888866665443 35789999999999999999999999998888888887
Q ss_pred HhcCChHHHHHhh
Q 009700 197 LSHGALMPLLAQL 209 (528)
Q Consensus 197 ~~~g~i~~Ll~ll 209 (528)
++ -+..++.+.
T Consensus 83 i~--n~~efLeL~ 93 (661)
T KOG2374|consen 83 IE--NLDEFLELS 93 (661)
T ss_pred Hh--CHHHHHHHh
Confidence 76 355666654
No 440
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=21.81 E-value=7e+02 Score=23.72 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCChHHH
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFS------SDEEVLTDACWALSYLSDGTNDKI 277 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~~ 277 (528)
.++..+.+..+..++..|+.+|.+=+ -+...+|.++.++.. .|-+.........+.+..+..-..
T Consensus 201 kvisal~dEs~~~~r~aAl~sLr~ds---------GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFv 271 (450)
T COG5095 201 KVISALLDESDEQTRDAALESLRNDS---------GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFV 271 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc---------cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceee
Confidence 33444435667777777776665432 234567777776652 245566666666666665543222
Q ss_pred HHHHHhCcHHHHHHHhc-----CCCh-----hhHHHHHHHHhHhhcCCc
Q 009700 278 QAVIEAGVCPRLVELLL-----HSST-----TVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~-----~~~~-----~v~~~al~~L~~l~~~~~ 316 (528)
+..+. .++|.++.++- +... .++.-|+..++..+....
T Consensus 272 dPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~ 319 (450)
T COG5095 272 DPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFS 319 (450)
T ss_pred cHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 22222 24555555442 2222 255556666665554433
No 441
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.10 E-value=6.3e+02 Score=22.94 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC------------C-hHHHH----HHHHHHHHHhcCCh
Q 009700 86 SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD------------L-PQLQF----EAAWALTNIASGTS 148 (528)
Q Consensus 86 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------------~-~~v~~----~a~~~L~~l~~~~~ 148 (528)
+.....++..+..+++. ++......+.++++.+.+.|..-+ + ..+.. .=...++.+++ ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 44555666677777665 556667778888888888776441 0 11222 22235666666 77
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.....+-+.++...+..+....+. .....-+|.++=... .|....++.......+..++..|+..|..+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 788888888999999998877432 222223444441111 233444454433677788999998888776
Q ss_pred cC
Q 009700 229 CR 230 (528)
Q Consensus 229 ~~ 230 (528)
.+
T Consensus 224 lr 225 (226)
T PF14666_consen 224 LR 225 (226)
T ss_pred hc
Confidence 54
No 442
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.62 E-value=2.4e+02 Score=24.71 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=48.2
Q ss_pred CCChHHHHhhcCC---CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHH
Q 009700 411 QGCIKPLCDLLVC---PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVK 487 (528)
Q Consensus 411 ~~~l~~L~~ll~~---~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ 487 (528)
.+=+..++..+.. .+.+....++..+..++...+.... --.+...|...|..+.++.|....++.+......
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~-----R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~~ 94 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNF-----RVHLRNEFERLGLLDILEKLRNLEDDDLQEQIDI 94 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHH-----HHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHH-----HHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHHH
Confidence 3446777777773 5567777777777777766544322 1235677889999999999999999988766544
Q ss_pred HHHH
Q 009700 488 LLER 491 (528)
Q Consensus 488 ii~~ 491 (528)
..+.
T Consensus 95 f~~~ 98 (197)
T PF06367_consen 95 FEEN 98 (197)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 443
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.44 E-value=62 Score=32.72 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHH
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLY 332 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 332 (528)
.+|..+...++..++.++.... .....+...++..--..+....+. ....+..+..+....+...+..........+-
T Consensus 257 eS~~hvVek~~~~~~s~~~~~~-~t~ql~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk 334 (763)
T KOG4231|consen 257 ESDQHVVEKACVALSSLARDVG-VTMQLMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDMLKALK 334 (763)
T ss_pred cccchhhcccccccccHHHHHH-HHHHHHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHH
Q ss_pred HHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 333 QLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 333 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
.+..+. ++.++.+|..++++++-........+-...+-..+++++..+.+++-+.+..|+..+
T Consensus 335 ~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 335 SLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAIL 397 (763)
T ss_pred HHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHh
No 444
>PLN03205 ATR interacting protein; Provisional
Probab=20.19 E-value=6e+02 Score=25.20 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=65.9
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhc---CCcchhHHHhccCChHHH---HHHhc-ccCchhHHHHHHHHHHHHhc-
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRL---YQLLT-QNYKKSIKKEACWTISNITA- 356 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L---~~lL~-~~~~~~v~~~a~~~L~nl~~- 356 (528)
+++.|+.+-.-.+..+...+++.|..+.. ++....+.-.+.+++..+ .+.-. +. ...||-+|..++.-|..
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~T-EE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRT-EEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccc-hhheeeehhhhhHHhhhc
Confidence 44556666666677777777777766643 233334444555554432 22221 33 56677787766655543
Q ss_pred CCHH-HHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcC
Q 009700 357 GSRS-QIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATS 398 (528)
Q Consensus 357 ~~~~-~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~ 398 (528)
.++. .+..+....+++.+-.+|+.. -..|+++|...|.-+..
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 2332 334444556778888888765 47899999877665443
Done!