Query 009700
Match_columns 528
No_of_seqs 396 out of 2720
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 8.5E-78 2.9E-82 622.8 47.0 519 1-527 1-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 4.9E-67 1.7E-71 539.1 47.5 491 29-527 14-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 6.8E-65 2.3E-69 528.1 47.2 500 1-500 3-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.7E-61 9.2E-66 500.9 41.0 495 4-500 9-516 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 5.3E-48 1.8E-52 393.3 45.8 426 73-499 21-448 (450)
6 3nmz_A APC variant protein; pr 100.0 8.3E-41 2.8E-45 332.6 30.1 368 68-444 28-453 (458)
7 3now_A UNC-45 protein, SD10334 100.0 1.8E-40 6E-45 348.0 31.2 367 73-446 378-787 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 2.2E-39 7.5E-44 328.1 33.1 365 116-497 3-452 (457)
9 3tpo_A Importin subunit alpha- 100.0 1E-38 3.4E-43 330.2 34.8 368 72-443 119-499 (529)
10 3ul1_B Importin subunit alpha- 100.0 5.6E-39 1.9E-43 330.2 31.8 368 72-443 100-480 (510)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-37 4.5E-42 323.3 40.3 402 72-492 101-528 (529)
12 2z6h_A Catenin beta-1, beta-ca 100.0 3.9E-37 1.3E-41 326.3 41.1 407 72-497 98-550 (644)
13 3now_A UNC-45 protein, SD10334 100.0 9.2E-37 3.1E-41 319.9 34.9 407 72-496 290-739 (810)
14 1xm9_A Plakophilin 1; armadill 100.0 6.6E-38 2.2E-42 317.3 24.9 362 73-443 3-451 (457)
15 3l6x_A Catenin delta-1; cateni 100.0 1.4E-36 4.7E-41 308.6 29.6 365 72-444 48-479 (584)
16 2jdq_A Importin alpha-1 subuni 100.0 1.5E-36 5.2E-41 308.7 29.9 367 72-443 64-445 (450)
17 4b8j_A Importin subunit alpha- 100.0 4.3E-36 1.5E-40 311.5 33.9 367 72-443 117-498 (528)
18 1wa5_B Importin alpha subunit; 100.0 4.3E-36 1.5E-40 311.4 33.8 368 72-444 130-513 (530)
19 2z6g_A B-catenin; FULL-length, 100.0 2.3E-34 7.9E-39 309.6 44.3 393 72-485 234-654 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 3.7E-35 1.3E-39 298.1 34.1 368 112-495 45-477 (584)
21 3nmz_A APC variant protein; pr 100.0 6.1E-35 2.1E-39 290.4 26.5 328 70-401 68-453 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 6.9E-34 2.4E-38 295.3 30.3 403 72-494 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 9.3E-33 3.2E-37 292.7 32.9 403 72-494 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 1.7E-32 5.8E-37 295.1 32.0 402 72-493 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 2.1E-30 7.3E-35 250.5 26.7 273 170-445 44-338 (354)
26 3nmw_A APC variant protein; AR 100.0 7.3E-31 2.5E-35 253.8 21.6 270 130-402 46-338 (354)
27 4hxt_A De novo protein OR329; 100.0 2.9E-27 9.9E-32 220.5 24.5 240 115-357 2-242 (252)
28 1xqr_A HSPBP1 protein; armadil 100.0 3.5E-27 1.2E-31 221.9 22.0 235 256-497 54-290 (296)
29 4hxt_A De novo protein OR329; 100.0 7.3E-27 2.5E-31 217.8 23.9 241 158-400 2-243 (252)
30 4db8_A Armadillo-repeat protei 100.0 2.4E-27 8.1E-32 221.2 20.5 239 115-356 12-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 9.9E-27 3.4E-31 217.0 21.0 239 72-313 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 4.2E-24 1.4E-28 219.8 22.4 321 74-398 336-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.4E-22 5E-27 208.4 29.9 398 74-494 257-728 (778)
34 4db6_A Armadillo repeat protei 99.9 6.2E-23 2.1E-27 185.5 23.5 198 241-440 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 7E-23 2.4E-27 185.2 21.3 199 113-313 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.6E-22 8.9E-27 188.7 21.4 187 130-317 54-242 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 4.7E-21 1.6E-25 172.2 16.5 197 116-314 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 1.5E-20 5.1E-25 168.9 14.4 196 73-272 9-230 (233)
39 4fdd_A Transportin-1; heat rep 99.8 1.6E-18 5.6E-23 189.7 22.2 353 75-445 93-475 (852)
40 1b3u_A Protein (protein phosph 99.8 7E-18 2.4E-22 177.0 25.4 381 74-493 205-586 (588)
41 1b3u_A Protein (protein phosph 99.8 1.7E-17 5.9E-22 174.0 24.1 380 74-494 166-548 (588)
42 4fdd_A Transportin-1; heat rep 99.8 2.8E-17 9.5E-22 179.9 26.6 392 76-494 52-471 (852)
43 2vgl_B AP-2 complex subunit be 99.8 8.4E-17 2.9E-21 168.1 25.8 334 73-445 87-423 (591)
44 3grl_A General vesicular trans 99.7 5.7E-15 2E-19 148.3 33.5 416 72-499 60-555 (651)
45 3grl_A General vesicular trans 99.7 2.6E-15 9E-20 150.7 29.4 368 72-446 21-454 (651)
46 1oyz_A Hypothetical protein YI 99.7 8.8E-16 3E-20 145.0 22.4 257 113-437 21-278 (280)
47 2vgl_B AP-2 complex subunit be 99.7 3.7E-15 1.3E-19 155.6 26.1 332 73-444 50-385 (591)
48 2bpt_A Importin beta-1 subunit 99.7 9.5E-15 3.3E-19 160.3 29.1 356 73-445 325-715 (861)
49 1oyz_A Hypothetical protein YI 99.7 1.1E-14 3.6E-19 137.5 23.3 254 72-394 23-278 (280)
50 1w63_A Adapter-related protein 99.7 2.5E-14 8.6E-19 149.9 27.4 368 17-441 20-414 (618)
51 2bpt_A Importin beta-1 subunit 99.7 1.8E-14 6.3E-19 158.0 27.0 400 74-494 371-811 (861)
52 1qgr_A Protein (importin beta 99.6 2.5E-14 8.4E-19 157.3 27.2 400 74-494 323-827 (876)
53 1qgr_A Protein (importin beta 99.6 5.9E-14 2E-18 154.3 28.0 394 74-492 174-677 (876)
54 1ibr_B P95, importin beta-1 su 99.6 3.6E-13 1.2E-17 136.5 28.1 389 74-495 3-438 (462)
55 1ibr_B P95, importin beta-1 su 99.6 1.4E-14 4.7E-19 147.1 16.8 361 74-445 37-441 (462)
56 1w63_A Adapter-related protein 99.6 1.5E-13 5E-18 144.1 22.5 287 73-398 108-414 (618)
57 1u6g_C TIP120 protein, CAND1; 99.6 3.9E-13 1.3E-17 152.9 27.8 404 73-494 7-463 (1230)
58 1u6g_C TIP120 protein, CAND1; 99.5 8E-13 2.7E-17 150.3 22.2 398 73-493 87-547 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 2.5E-12 8.5E-17 115.6 18.2 187 158-400 19-205 (211)
60 3ltj_A Alpharep-4; protein eng 99.5 9.5E-12 3.2E-16 110.9 20.8 185 158-398 14-198 (201)
61 3ltm_A Alpha-REP4; protein eng 99.4 3.1E-12 1.1E-16 115.0 17.6 187 114-357 18-204 (211)
62 3ltj_A Alpharep-4; protein eng 99.4 4.5E-12 1.5E-16 113.0 17.4 185 114-355 13-197 (201)
63 2vgl_A Adaptor protein complex 99.4 5.4E-10 1.8E-14 116.7 33.9 332 73-442 75-434 (621)
64 2vgl_A Adaptor protein complex 99.3 6.7E-09 2.3E-13 108.4 34.8 334 74-442 37-399 (621)
65 4gmo_A Putative uncharacterize 99.2 7E-10 2.4E-14 117.3 19.3 218 113-355 33-257 (684)
66 2db0_A 253AA long hypothetical 99.1 1.5E-08 5.2E-13 83.6 19.4 216 157-398 31-246 (253)
67 3tjz_B Coatomer subunit gamma; 99.1 1.7E-08 5.8E-13 96.1 20.9 277 73-394 69-349 (355)
68 4ady_A RPN2, 26S proteasome re 99.0 2.5E-08 8.7E-13 105.4 23.6 274 74-401 394-679 (963)
69 3b2a_A TON_1937, putative unch 99.0 3.6E-08 1.2E-12 85.2 16.6 226 241-492 32-259 (265)
70 4gmo_A Putative uncharacterize 98.9 6.8E-09 2.3E-13 109.8 14.8 212 160-397 36-257 (684)
71 2db0_A 253AA long hypothetical 98.9 3.6E-07 1.2E-11 75.6 20.8 218 198-443 30-248 (253)
72 1ho8_A Vacuolar ATP synthase s 98.9 1.3E-06 4.4E-11 85.0 25.6 321 158-493 77-475 (480)
73 2qk2_A LP04448P; mini spindles 98.9 3.3E-08 1.1E-12 90.5 14.1 186 203-399 18-206 (242)
74 4ady_A RPN2, 26S proteasome re 98.8 1.6E-06 5.4E-11 91.9 26.5 272 74-398 431-719 (963)
75 3tjz_B Coatomer subunit gamma; 98.8 1.5E-07 5.2E-12 89.6 16.7 309 85-443 40-352 (355)
76 2qk2_A LP04448P; mini spindles 98.7 2.3E-07 8E-12 84.8 14.8 188 286-494 17-205 (242)
77 3b2a_A TON_1937, putative unch 98.7 6.5E-07 2.2E-11 77.5 14.8 187 284-495 33-219 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.7 5.2E-07 1.8E-11 82.5 15.3 191 205-398 21-220 (249)
79 1wa5_C Importin alpha RE-expor 98.6 3.7E-05 1.3E-09 85.0 30.2 342 76-442 89-526 (960)
80 2qk1_A Protein STU2; STU2P, XM 98.6 4E-07 1.4E-11 83.3 11.6 193 162-356 20-220 (249)
81 1te4_A Conserved protein MTH18 98.5 1.2E-08 4.2E-13 83.5 0.8 121 241-396 11-131 (131)
82 2x1g_F Cadmus; transport prote 98.5 1.8E-05 6.2E-10 87.6 25.6 335 87-443 204-617 (971)
83 1te4_A Conserved protein MTH18 98.5 2.5E-08 8.6E-13 81.7 2.0 121 114-269 11-131 (131)
84 1wa5_C Importin alpha RE-expor 98.5 1.5E-05 5.2E-10 88.0 24.0 297 131-444 376-713 (960)
85 4hat_C Exportin-1; heat repeat 98.5 6.6E-05 2.3E-09 82.4 27.8 340 83-444 206-621 (1023)
86 2iw3_A Elongation factor 3A; a 98.5 2.1E-05 7.2E-10 84.4 23.1 303 73-397 15-323 (986)
87 1ho8_A Vacuolar ATP synthase s 98.4 6.8E-05 2.3E-09 73.0 24.2 322 73-398 78-476 (480)
88 3dad_A FH1/FH2 domain-containi 98.3 2.1E-05 7.2E-10 72.8 16.8 196 244-441 120-335 (339)
89 3m1i_C Exportin-1; heat repeat 98.3 0.00015 5.1E-09 80.8 27.1 344 84-444 207-621 (1049)
90 2x19_B Importin-13; nuclear tr 98.3 0.00043 1.5E-08 76.5 30.6 339 125-495 459-847 (963)
91 2x19_B Importin-13; nuclear tr 98.2 0.00011 3.9E-09 81.2 23.6 330 88-443 218-601 (963)
92 2x1g_F Cadmus; transport prote 98.2 0.00011 3.9E-09 81.2 23.3 299 130-446 478-819 (971)
93 3m1i_C Exportin-1; heat repeat 98.2 0.0018 6.2E-08 72.1 32.7 316 116-445 195-573 (1049)
94 4hat_C Exportin-1; heat repeat 98.2 0.00065 2.2E-08 74.6 27.1 314 116-445 195-573 (1023)
95 3ibv_A Exportin-T; karyopherin 98.1 3.8E-05 1.3E-09 84.2 16.5 303 83-401 204-569 (980)
96 3dad_A FH1/FH2 domain-containi 98.1 0.00012 3.9E-09 67.9 16.5 190 287-484 121-326 (339)
97 2iw3_A Elongation factor 3A; a 98.1 0.00057 2E-08 73.5 23.7 300 120-445 19-328 (986)
98 3ibv_A Exportin-T; karyopherin 97.8 0.00061 2.1E-08 74.7 18.9 304 127-445 205-570 (980)
99 3gjx_A Exportin-1; transport, 97.8 0.0062 2.1E-07 66.8 25.5 315 116-446 207-600 (1073)
100 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00046 1.6E-08 67.7 14.2 255 73-394 175-432 (800)
101 3gjx_A Exportin-1; transport, 97.7 0.0053 1.8E-07 67.4 24.4 296 83-401 218-598 (1073)
102 4ffb_C Protein STU2; tubulin f 97.7 0.001 3.6E-08 61.7 15.1 192 72-272 10-213 (278)
103 3c2g_A SYS-1 protein; beta-cat 97.5 0.059 2E-06 49.6 23.6 293 183-493 267-617 (619)
104 2of3_A ZYG-9; multifunctional 97.5 0.00092 3.2E-08 60.5 11.5 178 247-444 51-239 (266)
105 1upk_A MO25 protein; transfera 97.4 0.0059 2E-07 56.5 15.9 201 153-356 73-283 (341)
106 4ffb_C Protein STU2; tubulin f 97.4 0.0068 2.3E-07 56.1 16.8 188 289-494 14-212 (278)
107 1upk_A MO25 protein; transfera 97.4 0.034 1.1E-06 51.5 20.6 223 195-422 73-311 (341)
108 2of3_A ZYG-9; multifunctional 97.3 0.0059 2E-07 55.3 15.1 177 162-356 50-236 (266)
109 2fv2_A RCD1 required for cell 97.2 0.016 5.5E-07 51.2 15.5 139 302-443 74-226 (268)
110 3u0r_A Apoptosis inhibitor 5; 97.1 0.13 4.6E-06 49.8 22.0 123 170-312 40-162 (507)
111 3c2g_A SYS-1 protein; beta-cat 96.9 0.073 2.5E-06 49.0 17.8 172 267-440 267-472 (619)
112 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0074 2.5E-07 59.4 10.8 245 159-437 175-432 (800)
113 1lrv_A LRV, leucine-rich repea 96.6 0.0029 9.8E-08 56.9 6.0 140 162-393 102-241 (244)
114 3l9t_A Putative uncharacterize 96.6 0.073 2.5E-06 46.7 14.5 145 116-282 72-218 (240)
115 3u0r_A Apoptosis inhibitor 5; 96.6 0.63 2.1E-05 45.3 22.9 289 130-446 42-363 (507)
116 1lrv_A LRV, leucine-rich repea 96.5 0.002 6.7E-08 58.0 4.6 141 118-351 101-241 (244)
117 3a6p_A Exportin-5; exportin-5, 96.0 1.3 4.4E-05 49.9 24.6 299 73-398 12-380 (1204)
118 2f31_A Diaphanous protein homo 96.0 0.076 2.6E-06 47.4 11.9 139 340-484 67-218 (233)
119 2fv2_A RCD1 required for cell 95.9 0.069 2.3E-06 47.2 10.6 142 88-231 72-225 (268)
120 2f31_A Diaphanous protein homo 95.7 0.43 1.5E-05 42.4 15.6 154 77-232 5-182 (233)
121 3l9t_A Putative uncharacterize 95.7 0.22 7.4E-06 43.7 13.0 143 204-367 74-218 (240)
122 3eg5_B Protein diaphanous homo 95.4 0.14 4.7E-06 49.4 12.1 154 325-484 108-284 (383)
123 3eg5_B Protein diaphanous homo 95.3 0.81 2.8E-05 44.0 17.1 157 76-234 70-250 (383)
124 3ebb_A Phospholipase A2-activa 95.0 1.2 4E-05 41.3 16.5 173 117-295 105-287 (304)
125 1lsh_A Lipovitellin (LV-1N, LV 94.7 1.3 4.5E-05 48.9 18.9 160 214-402 408-580 (1056)
126 1lsh_A Lipovitellin (LV-1N, LV 94.5 1.2 4E-05 49.3 17.9 135 242-396 391-541 (1056)
127 2bnx_A Diaphanous protein homo 94.3 0.73 2.5E-05 44.4 13.8 139 340-484 71-222 (386)
128 3a6p_A Exportin-5; exportin-5, 94.2 1.5 5.3E-05 49.2 18.3 287 130-442 27-381 (1204)
129 3ebb_A Phospholipase A2-activa 93.9 0.33 1.1E-05 45.0 10.1 151 75-231 106-264 (304)
130 2bnx_A Diaphanous protein homo 93.7 3.2 0.00011 39.9 17.1 155 77-233 9-187 (386)
131 3gs3_A Symplekin, LD45768P; he 93.6 3.9 0.00013 36.6 21.4 100 75-185 18-117 (257)
132 3o2t_A Symplekin; heat repeat, 92.5 7.4 0.00025 37.1 21.1 88 87-185 40-127 (386)
133 3fga_B Serine/threonine-protei 91.9 6.5 0.00022 37.6 16.0 233 153-399 124-367 (403)
134 3qml_C Protein SLS1, nucleotid 90.9 2.2 7.4E-05 38.9 11.0 136 298-441 42-189 (315)
135 3qml_C Protein SLS1, nucleotid 88.8 7.2 0.00024 35.5 12.6 151 241-397 21-188 (315)
136 2npp_B PP2A, B subunit, serine 88.1 10 0.00035 36.9 14.2 234 152-399 156-400 (449)
137 2npp_B PP2A, B subunit, serine 87.7 10 0.00035 36.9 13.9 226 74-317 164-403 (449)
138 3g2s_A C-terminal fragment of 87.3 1.7 6E-05 35.2 7.1 74 370-443 49-128 (149)
139 1mhq_A ADP-ribosylation factor 85.8 2.9 0.0001 33.9 7.7 73 370-442 39-117 (148)
140 3fga_B Serine/threonine-protei 85.2 12 0.00042 35.7 12.7 225 74-317 131-370 (403)
141 3ldz_A STAM-1, signal transduc 85.2 1.8 6.2E-05 34.7 6.2 74 370-443 43-116 (140)
142 3o2t_A Symplekin; heat repeat, 84.4 26 0.0009 33.3 14.7 134 299-442 40-184 (386)
143 2p8q_B Snurportin-1; heat repe 83.7 0.63 2.2E-05 27.7 2.0 38 11-50 2-40 (40)
144 1vsy_5 Proteasome activator BL 82.8 5.4 0.00018 43.5 10.4 185 160-355 135-364 (997)
145 1juq_A ADP-ribosylation factor 82.8 3 0.0001 34.8 6.7 73 370-442 51-129 (171)
146 1vdy_A Hypothetical protein (R 82.4 2.7 9.3E-05 33.5 5.9 76 413-498 50-134 (140)
147 1x5b_A Signal transducing adap 82.2 3.7 0.00013 33.9 7.0 73 413-495 53-126 (163)
148 1x5b_A Signal transducing adap 81.9 2.6 8.9E-05 34.8 6.0 74 72-145 52-125 (163)
149 3ldz_A STAM-1, signal transduc 80.9 3.2 0.00011 33.2 6.0 72 413-494 43-114 (140)
150 1juq_A ADP-ribosylation factor 79.1 6 0.0002 32.9 7.3 73 413-495 51-129 (171)
151 1mhq_A ADP-ribosylation factor 78.7 5.9 0.0002 32.1 6.9 73 413-495 39-117 (148)
152 3g2s_A C-terminal fragment of 77.3 6.5 0.00022 31.8 6.8 72 413-494 49-126 (149)
153 3zyq_A Hepatocyte growth facto 74.5 3.4 0.00012 36.3 4.8 74 72-145 45-118 (226)
154 1vsy_4 Proteasome activator BL 73.6 97 0.0033 32.8 17.1 120 149-270 331-454 (799)
155 3ut4_A CTHE_2751, putative unc 70.9 9 0.00031 30.1 5.8 94 370-494 32-130 (134)
156 3gs3_A Symplekin, LD45768P; he 68.5 64 0.0022 28.7 17.4 152 285-445 54-247 (257)
157 1dvp_A HRS, hepatocyte growth 67.6 5.2 0.00018 34.9 4.4 74 72-145 42-115 (220)
158 2jak_A Serine/threonine-protei 66.1 14 0.00046 35.3 7.1 72 74-147 176-247 (392)
159 3zyq_A Hepatocyte growth facto 65.9 14 0.00048 32.3 6.8 72 413-494 46-118 (226)
160 1dvp_A HRS, hepatocyte growth 63.4 17 0.00059 31.6 6.9 73 413-495 43-116 (220)
161 2jak_A Serine/threonine-protei 63.4 36 0.0012 32.4 9.4 79 153-232 169-247 (392)
162 1vsy_5 Proteasome activator BL 61.6 92 0.0032 33.9 13.5 189 238-442 129-366 (997)
163 2b6c_A Hypothetical protein EF 58.4 90 0.0031 26.9 11.6 138 245-408 58-198 (220)
164 1elk_A Target of MYB1; superhe 57.1 29 0.00098 28.2 6.8 72 413-494 54-130 (157)
165 3pst_A Protein DOA1; protein d 54.6 33 0.0011 33.0 7.6 107 83-194 273-396 (425)
166 1elk_A Target of MYB1; superhe 53.7 26 0.00087 28.6 5.9 74 72-145 53-130 (157)
167 1vdy_A Hypothetical protein (R 53.2 43 0.0015 26.6 6.8 72 370-441 50-130 (140)
168 4atg_A TAF6; transcription, TF 51.7 49 0.0017 28.0 7.4 128 242-378 40-177 (196)
169 3jxy_A Alkylpurine DNA glycosy 51.4 94 0.0032 27.0 9.7 77 285-369 132-208 (232)
170 3gae_A Protein DOA1; UFD3, CDC 50.0 63 0.0022 28.6 8.4 104 169-272 101-218 (253)
171 3gae_A Protein DOA1; UFD3, CDC 46.8 21 0.00072 31.8 4.7 103 83-190 101-220 (253)
172 3pst_A Protein DOA1; protein d 44.8 1E+02 0.0035 29.6 9.2 105 166-274 270-392 (425)
173 3l3f_X Protein DOA1, DOA1/UFD3 43.6 35 0.0012 32.1 5.8 131 133-274 180-329 (362)
174 3l3f_X Protein DOA1, DOA1/UFD3 43.2 45 0.0015 31.3 6.5 103 293-399 208-327 (362)
175 3s4w_B Protein FACD2, fanconi 41.6 4.2E+02 0.014 29.7 20.6 329 116-488 158-505 (1323)
176 2xpp_A IWS1, ECU08_0440; trans 41.2 1.1E+02 0.0037 24.4 7.5 76 276-355 53-135 (145)
177 4dvg_B Diaphanous protein; cyt 41.0 1.5E+02 0.0053 24.5 8.7 169 319-495 99-297 (353)
178 1sz9_A PCF11 protein; RNA poly 38.4 92 0.0031 24.8 6.8 88 256-354 25-112 (144)
179 4flb_A Regulation of nuclear P 37.9 52 0.0018 25.6 5.3 63 243-315 9-71 (132)
180 1w9c_A CRM1 protein, exportin 33.6 2.8E+02 0.0097 25.4 15.9 184 299-494 44-245 (321)
181 3nfq_A Transcription factor IW 33.5 2E+02 0.0068 23.6 8.1 77 276-356 68-151 (170)
182 3jxy_A Alkylpurine DNA glycosy 33.1 2.4E+02 0.0081 24.3 12.2 141 118-283 64-207 (232)
183 2b6c_A Hypothetical protein EF 32.9 2.3E+02 0.0079 24.2 13.6 139 118-281 58-198 (220)
184 1wjt_A Transcription elongatio 31.4 54 0.0019 24.4 4.0 38 458-495 47-85 (103)
185 3gjx_B Snurportin-1; transport 31.3 11 0.00038 34.9 0.3 44 8-52 28-71 (365)
186 4fu3_A Regulation of nuclear P 30.2 1.5E+02 0.0053 22.9 7.0 60 244-313 9-68 (135)
187 3rru_A TOM1L1 protein; structu 28.9 66 0.0023 25.9 4.5 74 370-443 54-132 (152)
188 1sz9_A PCF11 protein; RNA poly 26.5 2.4E+02 0.0081 22.3 7.8 70 327-397 44-113 (144)
189 1vsy_4 Proteasome activator BL 25.2 5.2E+02 0.018 27.2 11.7 111 241-355 338-454 (799)
190 4atg_A TAF6; transcription, TF 21.6 3.6E+02 0.012 22.6 13.0 112 201-313 41-162 (196)
191 3rru_A TOM1L1 protein; structu 20.9 1.6E+02 0.0054 23.6 5.3 73 414-496 55-132 (152)
192 2g7o_A Protein TRAM; four heli 20.9 86 0.0029 21.3 3.0 20 479-498 50-69 (70)
193 1t06_A Hypothetical protein; s 20.1 1.8E+02 0.0063 25.2 6.1 76 286-367 110-191 (235)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.5e-78 Score=622.83 Aligned_cols=519 Identities=46% Similarity=0.759 Sum_probs=403.6
Q ss_pred CCCCCCC-CchHHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCch-hhh-hhHHHhhccHHH
Q 009700 1 MSLRPGS-RTEVRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVT-EAN-ASIEKKLESIPS 76 (528)
Q Consensus 1 ~~~~~~~-~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~-~~~-~~~~~~~~~l~~ 76 (528)
|+.+++. .+++|+++||+ |.|++|+||||+++.++|||+||++++.|||+.....++..+. .+. .........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 7888876 57899999997 8999999999999999999999999999999875433221111 111 111111246899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009700 77 MVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIE 156 (528)
Q Consensus 77 l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 156 (528)
+++.++|+|++.+..|+..+|++++.+.+++++.+++.|++|.|+++|..++++.++..|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999987666999999999999999999999999999
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccch----hhHHHHHHHHHhhhhcCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~----~~~~~~~a~~~L~~l~~~~ 232 (528)
.|++|.|+.+|.++++.+++.|+|+|+||+.+++.+|+.+.+.|++++|+.++.... ...+++.++|+|++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 2457899999999999987
Q ss_pred -CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 -PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+........+++|.|+.++.+++++++..++|+|++++....+..+.++..|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASW 391 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 391 (528)
+.+++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++++++.+++.+++.|++|.|+.++.+++.+++.+|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999898999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHH
Q 009700 392 AISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIE 471 (528)
Q Consensus 392 aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 471 (528)
+|+|++.+++++++.++++.|++++|+++|.+.|++++..++++|.+|+..+++... .++++.+|+++||+++|+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~-----~~~~~~~iee~ggl~~ie 474 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGGLDKIE 474 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC-----hHHHHHHHHHCCcHHHHH
Confidence 999999988999999999999999999999999999999999999999998876432 577899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCcccccC-CCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 472 NLQSHDNNEIYEKAVKLLERYWVEEEDDEQN-IPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 472 ~L~~~~~~~v~~~a~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
.||+|+|++||++|..||++||++|++||++ .|+.++++|.|+.+ +.++++|+|
T Consensus 475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~f 529 (529)
T 3tpo_A 475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 529 (529)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCC--CCCCCCCCC
Confidence 9999999999999999999999987776665 68888889999876 356789999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.9e-67 Score=539.06 Aligned_cols=491 Identities=46% Similarity=0.754 Sum_probs=393.4
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh
Q 009700 29 REDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI 108 (528)
Q Consensus 29 r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~ 108 (528)
|.....+.|+++.+.+....++...+.++....+........-..++.+++.++|+|++.++.|+..+|++++.+++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp ---------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 34445667777777777777665543333221111111111113689999999999999999999999999999889999
Q ss_pred HHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 009700 109 EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD 188 (528)
Q Consensus 109 ~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~ 188 (528)
+.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++.+..+++.|++|.|+.+|.++++++++.|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998766689999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCChHHHHHhhccch----hhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHH
Q 009700 189 SPSCRDLVLSHGALMPLLAQLNEHS----KLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDAC 263 (528)
Q Consensus 189 ~~~~~~~~~~~g~i~~Ll~ll~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~ 263 (528)
++.+|+.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999995332 2457899999999999987 5555666789999999999999999999999
Q ss_pred HHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhH
Q 009700 264 WALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSI 343 (528)
Q Consensus 264 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 343 (528)
|+|++++....+..+.+...|+++.|+.+|.+.+..++.+++++|+|++.+++..+..+++.|+++.|+.+|.++ +..+
T Consensus 254 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v 332 (510)
T 3ul1_B 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI 332 (510)
T ss_dssp HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred HHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence 999999999988888899999999999999999999999999999999999999998999999999999999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC
Q 009700 344 KKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC 423 (528)
Q Consensus 344 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~ 423 (528)
++.|+|+|+|++++++.+++.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.++++.|++++|+++|++
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcccccC-
Q 009700 424 PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEEEDDEQN- 502 (528)
Q Consensus 424 ~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~~~~~~~- 502 (528)
.|++++..++++|.+|+..+++... .++++.+|+++||+++|+.||+|+|++||++|..||++||++|++||++
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~-----~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~ 487 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGE-----TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNV 487 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccc-----hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 9999999999999999998876432 5678999999999999999999999999999999999999988776665
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCcC
Q 009700 503 IPDGNNPEFNFGTGQPNIPSEGFKF 527 (528)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (528)
.|+.++++|.|+.+ +.++++|||
T Consensus 488 ~~~~~~~~~~~~~~--~~~~~~~~~ 510 (510)
T 3ul1_B 488 VPETTSEGFAFQVQ--DGAPGTFNF 510 (510)
T ss_dssp -------------------------
T ss_pred CCCCCccccccCCC--CCCCCCCCC
Confidence 68888889999866 457789999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.8e-65 Score=528.08 Aligned_cols=500 Identities=77% Similarity=1.203 Sum_probs=404.0
Q ss_pred CCCCCCCCchHHhhccCCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccccCCCCchhhhhhHHHhhccHHHHHHH
Q 009700 1 MSLRPGSRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLILQSQPVTEANASIEKKLESIPSMVQG 80 (528)
Q Consensus 1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (528)
|++.+++++++|+++||++.+++|+|+||+++.++|||+||++++.|||+.....+..++...........+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 77777788999999999999999999999999999999999999999999743322211111111112233579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 009700 81 VLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAV 160 (528)
Q Consensus 81 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 160 (528)
|.++++..+..|++.|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999886557889999999999999999987658999999999999999889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV 240 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 240 (528)
|.|+.+|.++++.+++.|+|+|++++.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999996677899999999999999998777777777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.+++|.|+.++.+++++++..++|+|++++...+...+.+++.|+++.|+.+|.+.++.++..|+++|++++.+.+...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999988888
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+++..++.+++.|++|.|+.++.++++.++..|+|+|+|++..+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 89999999999999987657899999999999999999999999999999999999999999999999999999999987
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHH
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNE 480 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~ 480 (528)
+++...++++.|+++.|+.+|...+++++..++++|.+++..++........+.++|+..++++||+++|+.|++|++++
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~ 482 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 88999999999999999999999999999999999999999887644322223677999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcccc
Q 009700 481 IYEKAVKLLERYWVEEEDDE 500 (528)
Q Consensus 481 v~~~a~~ii~~~~~~~~~~~ 500 (528)
++++|..++++||+.+++|+
T Consensus 483 v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 483 IYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHCCCccccc
Confidence 99999999999999876654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.7e-61 Score=500.93 Aligned_cols=495 Identities=54% Similarity=0.826 Sum_probs=425.3
Q ss_pred CCCCCchHHhhccCC-C-CChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhccc---cCCCCchh----hhhhHH-Hhhcc
Q 009700 4 RPGSRTEVRKKSYKT-G-VDADEARRRREDNLVEIRKNKREDSLLKKRREGLI---LQSQPVTE----ANASIE-KKLES 73 (528)
Q Consensus 4 ~~~~~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~---~~~~~~~~----~~~~~~-~~~~~ 73 (528)
....+++.|++.||+ | .+++|+|+||++..++|||+||++++.|||+.... .+..+... ...... ...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (530)
T 1wa5_B 9 TSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQE 88 (530)
T ss_dssp ---CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CC
T ss_pred CCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHH
Confidence 344467889999998 8 89999999999999999999999999999987532 11100000 011111 12256
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+++.|+++++..+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999987656778889999999999999998733999999999999999988899999
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK- 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~- 232 (528)
+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+.+++.+...|++++|+.++ .+.+..++..++|+|++|+.+.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999988999999999999999999 5688899999999999999887
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+........+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.+.++.++..|+++|++++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 66666677899999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
.+.+...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++..++.+++.|++|.|+.++.++++.++..|+|+
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99888888889999999999999998 99999999999999999899999999999999999999999999999999999
Q ss_pred HHHhcCCCCH--HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 393 ISNATSGGTR--EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 393 L~nl~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
|++++..+++ +...++.+.|+++.|+.++...++.++..++++|.+++..++..........++++..+.++||+++|
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 486 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence 9999987666 88899999999999999999999999999999999999987653221011256789999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCcccc
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWVEEEDDE 500 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~~~~~~~ 500 (528)
+.|++|++++|+++|..+|++||..+++||
T Consensus 487 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 487 FNCQQNENDKIYEKAYKIIETYFGEEEDAV 516 (530)
T ss_dssp HGGGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence 999999999999999999999999877653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=5.3e-48 Score=393.30 Aligned_cols=426 Identities=60% Similarity=0.968 Sum_probs=385.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhc-CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRA-GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
.++.+++.++++++.++..|+..|+++++....++.+.+++. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999875446667778887 9999999999988349999999999999999888888
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.++.++..+.+..++..++|+|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999889999999999999999995457899999999999999987
Q ss_pred C-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 232 K-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 232 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
. +........+++|.|+.++.++++.++..++|+|.+++...++....+...|+++.|+.+|.+.++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555555668999999999999999999999999999999887788888889999999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
++.+.+...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+++...+.+++.|++|.|+.++.++++.+|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888787888999999999999998 999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
|+|+|++..++++...++.+.|+++.|+.+++.++++++..++++|.+++..++..........++|+..+.++||+++|
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence 99999998777888898999999999999999999999999999999999977653221111246799999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCCccc
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWVEEEDD 499 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~~~~~~ 499 (528)
..|++|++.++++.|..+|++||++|++|
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999877654
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.3e-41 Score=332.62 Aligned_cols=368 Identities=18% Similarity=0.179 Sum_probs=297.1
Q ss_pred HHhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh-HHHHhcCcHHHHHHhhcCCCC-----------hHHHHH
Q 009700 68 EKKLESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI-EEVIRAGVVPRFVEFLDRHDL-----------PQLQFE 135 (528)
Q Consensus 68 ~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~-----------~~v~~~ 135 (528)
..+++.++.++.++.+.|+.. .++++++...+++. ..+++.|++|.|+++|...+. ++++.+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp -----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 345678899999999888763 44555554444554 788999999999999997542 699999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChh
Q 009700 136 AAWALTNIASGTSEHTRVVIEHGAV----------PKFVQLLGSAS--DD-----VRE-------QAVWALGNVAGDSPS 191 (528)
Q Consensus 136 a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----i~~-------~a~~~L~nl~~~~~~ 191 (528)
|+|+|+||+.++++.++...+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 9999999999999999998888888 66777776642 22 555 999999999766 78
Q ss_pred HHHHHHhcCChHHHHHhhcc----------chhhHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcCCCHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFSSDEEVL 259 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~ 259 (528)
+|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+++...... ..+++|.|+.+|.+++++++
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 99999999999999999932 2457899999999999998864332222 46779999999999999999
Q ss_pred HHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhc
Q 009700 260 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLT 336 (528)
Q Consensus 260 ~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~ 336 (528)
..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999985 567788899999999999975 557889999999999999985544333454 7899999999998
Q ss_pred ccCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 337 QNYKK----SIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 337 ~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+. +. .+++.|+|+|.|++. ++++.++.+++.|++|.|+.+|.+++..++++|+|+|.|++.. ++++...+.
T Consensus 341 ~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~ 418 (458)
T 3nmz_A 341 YR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALW 418 (458)
T ss_dssp CC-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred CC-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 77 43 499999999999996 7899999999999999999999999999999999999999974 688899999
Q ss_pred HCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 410 SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 410 ~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+.|++++|+.+|.++++.+++.++++|.+++...+
T Consensus 419 ~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999997653
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-40 Score=348.01 Aligned_cols=367 Identities=15% Similarity=0.129 Sum_probs=319.6
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-
Q 009700 73 SIPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS- 148 (528)
Q Consensus 73 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~- 148 (528)
.++.++++|.++ |++.+..|++.|..+... .+....++ +.|++|.|+.+|++++ +.+++.|+|+|+|++.+++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367888888887 889999999999988654 34444555 5899999999999987 8999999999999998652
Q ss_pred ----------------------------hh---HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 149 ----------------------------EH---TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 149 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
.. .+.+++.|++|.|+.+|.++++.+++.|+|+|+||+.+ +.+|..+.
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 12 26788999999999999999999999999999999976 55999999
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCCCh--hhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCC
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPAPF--DQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~ 273 (528)
+.|++++|+.+| .+.+...++.|+|+|.+++... |...+ ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 6667788999999999999764 22111 12357899999999865 3445678999999999998
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
++..+.+++.|+++.|+.+|.+.++.++.+|+++|+|++.+.+.+.+.+...|.++.|+.++.++ +..+|++|+|+|+|
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999997776554442379999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC---ChHHH
Q 009700 354 ITAGSRSQIQAVIE-ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP---DPRIV 429 (528)
Q Consensus 354 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~~~ 429 (528)
++++++..++.+++ .|++|.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.. +++++
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~ 770 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence 99988999999998 89999999999999999999999999999984 578899999999999999999765 78999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 009700 430 TVCLEGLENILKIGEAD 446 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~~ 446 (528)
+.++++|.++++.+.-.
T Consensus 771 e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 771 EVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 99999999999887643
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.2e-39 Score=328.12 Aligned_cols=365 Identities=17% Similarity=0.214 Sum_probs=311.7
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
.+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++.++..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999988 899999999999999877778889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc--------C--------CCHHHH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF--------S--------SDEEVL 259 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~ 259 (528)
+.+.|++++|+.+|..+++.++++.++|+|+||+... ........+++|.|+.++. + .+.++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778999999999999999983 3333333499999999992 2 356778
Q ss_pred HHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcC------------------
Q 009700 260 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTG------------------ 314 (528)
Q Consensus 260 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~------------------ 314 (528)
..++|+|.||+.. ++....+.+. |+++.|+.+|.+ .+..+...|+.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7788888887 999999999985 4567888898888888621
Q ss_pred --------------------------------CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--
Q 009700 315 --------------------------------DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-- 360 (528)
Q Consensus 315 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 360 (528)
.+...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1224456777888999999998775789999999999999986532
Q ss_pred -HH-HHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh------HHHHH
Q 009700 361 -QI-QAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP------RIVTV 431 (528)
Q Consensus 361 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~~~~~ 431 (528)
.+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+ . ....++..|+++.|+++|...++ +++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 23 4455 689999999999999999999999999999884 2 34556667899999999998754 68889
Q ss_pred HHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCc
Q 009700 432 CLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYWVEEE 497 (528)
Q Consensus 432 ~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~~~~~ 497 (528)
++.+|.+++...+. +...+.++||++.|..|+.|+ ++++|+.|.++|.+||...+
T Consensus 397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865432 577888999999999999999 99999999999999997543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-38 Score=330.21 Aligned_cols=368 Identities=24% Similarity=0.362 Sum_probs=325.3
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|++.|.+ +++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 679999999974 56889999999999998874 556778899999999999999998 999999999999999989999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS-----DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
+..+++.|+++.|+.+|..++ ..+...++|+|++++.+...........++++.|+.++ .+++++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998643 46788999999999987654444445567899999999 788899999999999
Q ss_pred hhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 226 SNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
++++.+.+... .....+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 99998753222 23347899999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
+++|+|++.++..+...+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.++
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999888999999999999999999 99999999999999986 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC----CC-HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 384 EVKKEASWAISNATSG----GT-REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++..++++|.|+... +. ......+.+.|+++.|..+..+++.++...+..+|.+++...
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999742 22 334455668899999999999999999999999998887543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.6e-39 Score=330.17 Aligned_cols=368 Identities=24% Similarity=0.365 Sum_probs=324.9
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.+|.|+++|++ +++.+|..|+++|.++++.. .+..+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 679999999985 56899999999999999874 567788999999999999999988 999999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSAS-----DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
+..+.+.|+++.|+.+|..++ ..+...++|+|+|++.............++++.|+.++ .+.+.+++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998743 45788999999999977654444445567889999999 788899999999999
Q ss_pred hhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 009700 226 SNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPA 304 (528)
Q Consensus 226 ~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 304 (528)
++|+...+... .....+++|.|+.++.+.+..++..+++++++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 99998753222 23347889999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCCh
Q 009700 305 LRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEF 383 (528)
Q Consensus 305 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~ 383 (528)
+++|+|++.++..+.+.+++.|+++.|+.+|.++ +..+|++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.++
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999998999999999999999999 99999999999999987 678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC----CC-HHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 384 EVKKEASWAISNATSG----GT-REQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 384 ~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+++..++++|.|++.. +. ......+.+.|+++.|..+..+++.++...+...|.+++...
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999752 22 334455668899999999999999999999999998887543
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.3e-37 Score=323.26 Aligned_cols=402 Identities=20% Similarity=0.217 Sum_probs=341.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.++++++.++..|++.|.+++... ......+.+.|++|.|+.+|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 67999999999999999999999999998874 455667778999999999999987 8999999999999999889999
Q ss_pred HHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSA-SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+. ....+..++.+|.+++. ++..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999874 46778889999999986 456788999999999999999 66688999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L 308 (528)
..+.. ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 86432 3457899999999999999999999999999999888888999999999999999976 3478999999999
Q ss_pred hHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++.+.+. ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.+.. ....+.+.|++|.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999886543 345678899999999999988335999999999999988544 4477889999999999999999999
Q ss_pred HHHHHHHHHH--hcCCC------------------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 386 KKEASWAISN--ATSGG------------------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 386 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++|+|+++| +..++ .++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 9998888887 33322 2344466789999999999999999999999999999976321
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
++...+.+.||++.|..|++|+|++|+..|..++.++
T Consensus 492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2577888999999999999999999999999999864
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=326.31 Aligned_cols=407 Identities=20% Similarity=0.230 Sum_probs=342.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.++++++.++..|+.+|.+++... ......+++.|++|.|+.+|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 57999999999999999999999999999875 556677788999999999999987 8888888999999998889999
Q ss_pred HHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSA-SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+. ...++..++.+|+|++. ++..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999884 47888999999999985 456889999999999999999 66689999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L 308 (528)
..+. .....+++|.|+.++.+.+++++..++|+|++|+..+++....+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 234568999999999999999999999999999998888888999999999999999873 378999999999
Q ss_pred hHhhcCCcc--h-hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT--Q-TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++...+. . ...+.+.|+++.|+.+|.++.+..+++.|+|+|+|++.+... .+.+++.|++|.|+.++.+++.++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 999975442 2 234778899999999999873469999999999999886444 478889999999999999876666
Q ss_pred HHHHHHHHHH--hcCCC------------------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 386 KKEASWAISN--ATSGG------------------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 386 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
|++|+|+++| +..++ +......+.+.|+++.|+.++.+.++.++..++.+|.++....
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-- 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--
Confidence 5555555544 33222 2344457779999999999999999999999999999987431
Q ss_pred chhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhcCCCc
Q 009700 446 DKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEI------------------YEK--AVKLLERYWVEEE 497 (528)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~ii~~~~~~~~ 497 (528)
.+...+.+.|+++.|..+++++|++| |.. +..++..||..+.
T Consensus 489 ----------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ----------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 25788899999999999999999999 444 6778888988764
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.2e-37 Score=319.94 Aligned_cols=407 Identities=14% Similarity=0.127 Sum_probs=336.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-hh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS-EH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~ 150 (528)
+.++.++.++.|+++..+..|++++.+.++. ...++.+++.|+ |.|+.++++++ +.++..|+++|++++.... +.
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~ 365 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA 365 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence 6799999999999999999999999997665 567778888885 99999999877 8999999999999985221 22
Q ss_pred HHHHHhcC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 151 TRVVIEHG----AVPKFVQLLGSA--SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 151 ~~~i~~~g----~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
....+..| +++.++++|.++ ++++++.|+|+|++++.+.+.....+.+.|+++.|+.++ ++.+..++..++|+
T Consensus 366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~ 444 (810)
T 3now_A 366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT 444 (810)
T ss_dssp SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence 22223333 367788888887 889999999999999877664444455689999999999 67788999999999
Q ss_pred hhhhcCCCCCC---------------------------------ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 225 LSNFCRGKPPA---------------------------------PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 225 L~~l~~~~~~~---------------------------------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
|.|++.+.+.. ......|++|.|+.++.++++.+++.++|+|+|++.
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 99999864211 112235899999999999999999999999999996
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHH--HhccCChHHHHHHhcccCchhHHHHHHH
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQC--VIDNQGLPRLYQLLTQNYKKSIKKEACW 349 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~--~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 349 (528)
. ++....+++.|+++.|+.+|.+.++..+..|+++|++++.+.+..... ....+++++|+.+|.++.+...+.+|+|
T Consensus 525 d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 525 L-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp S-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred C-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4 668889999999999999999999999999999999998754432100 0113689999999986523345679999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHH-CCChHHHHhhcCCCChHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVS-QGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~ 428 (528)
+|+||+.++++..+.+++.|++|.|+.++.++++.+++.|+++|+|++.+ ++....+.+ .|.++.|+.++.+.+..+
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence 99999998888899999999999999999999999999999999999983 556666665 689999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 009700 429 VTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVEE 496 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~~ 496 (528)
+..++++|.++....+.. ....+...|+++.|..|..+++.+++..|.+.+.++...+
T Consensus 682 q~~Aa~ALanLt~~s~~~----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 682 ATACAGALAIITSVSVKC----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHHHHHHHCHHH----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHH----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999854321 2334443899999999999999999999999999987643
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.6e-38 Score=317.29 Aligned_cols=362 Identities=15% Similarity=0.197 Sum_probs=303.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.++.+|+++++..+..|+.+|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++.+.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5799999999999999999999999987652 344558889999999999999887 99999999999999998899999
Q ss_pred HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--------c-------hhhH
Q 009700 153 VVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--------H-------SKLS 216 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--------~-------~~~~ 216 (528)
.+++.|++|.|+.+|. ++++++++.++|+|+|++.+ +..+..+.+ |++++|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 668888888 999999999931 1 2467
Q ss_pred HHHHHHHHhhhhcCCCCCCChhhh-H-HHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCC---------------
Q 009700 217 MLRNATWTLSNFCRGKPPAPFDQV-R-PALAALQHLIFS------SDEEVLTDACWALSYLSDGT--------------- 273 (528)
Q Consensus 217 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~--------------- 273 (528)
+++.++|+|+||+.+ +....... . |++|.|+.++.+ .+..+.+.+++++.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 33222233 3 899999999985 46678888999998886321
Q ss_pred -----------------------------------hHHHHHHHHhCcHHHHHHHhcC-CChhhHHHHHHHHhHhhcCCcc
Q 009700 274 -----------------------------------NDKIQAVIEAGVCPRLVELLLH-SSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 274 -----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~ 317 (528)
+...+.+.+.++++.++.+|.+ .++.+++.|+++|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 0112234455678899999976 4688999999999999987754
Q ss_pred hh----HHH-hccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCCh------HHH
Q 009700 318 QT----QCV-IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEF------EVK 386 (528)
Q Consensus 318 ~~----~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~ 386 (528)
.. +.+ .+.|+++.|+++|.++ +..++++|+|+|+|++.+ + ..+.++..|++|.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 32 233 4689999999999999 999999999999999874 3 45566777899999999998743 688
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC-ChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~~l~~l~~i~~~~ 443 (528)
..++++|.|++.+. +++...+.+.|+++.|+.++.++ ++++.+.+.++|.+++...
T Consensus 395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 89999999999864 57788888999999999999999 9999999999999888543
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-36 Score=308.57 Aligned_cols=365 Identities=19% Similarity=0.201 Sum_probs=302.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Chhh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG-TSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~ 150 (528)
..++.++++|.++++.++..|+++|++++... .++...+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 46899999999999999999999999998753 667888899999999999999988 99999999999999996 6899
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-----------------cc
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-----------------EH 212 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-----------------~~ 212 (528)
+..+++.|+||.|+.+|.+ .+.++++.++++|+|++.. +.++..+.. +++++|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6789999999999999974 567777775 56999999872 12
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcC------CCHHHHHHHHHHHHhhccCChHH--------
Q 009700 213 SKLSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFS------SDEEVLTDACWALSYLSDGTNDK-------- 276 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 276 (528)
.+..++.+++|+|.||+...+.....+ ..++++.|+.++++ .+...++.++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357899999999999998754322222 25778899998874 46789999999999998652111
Q ss_pred -----------------HHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcCCcch----hHHHhccCChHHHHHH
Q 009700 277 -----------------IQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGDDTQ----TQCVIDNQGLPRLYQL 334 (528)
Q Consensus 277 -----------------~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l 334 (528)
++.+.+.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111223345778899996 467899999999999999876322 2244567889999999
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--------ChHHHHHHHHHHHHhcCCCCHHHHH
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--------EFEVKKEASWAISNATSGGTREQIQ 406 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 406 (528)
|.++ +..+++.|+|+|+||+.+.. .+..+..|++|.|+.+|.++ ..++...|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9998 99999999999999997543 23455789999999999876 357899999999999985 688899
Q ss_pred HHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+.+.|+++.|+.++.+. .+.+.+.+.++|.++....+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 88999999999999986443
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.5e-36 Score=308.72 Aligned_cols=367 Identities=25% Similarity=0.320 Sum_probs=322.6
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.++++ ++.++..|++.|.+++... .+....+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4689999999988 8999999999999998753 445667788999999999999987 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 151 TRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
+..+++.|+++.|+.++.+ .++.++..++|+|++++.+. +..+... ..++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 4322222 267899999999 677889999999999999
Q ss_pred cCCCCC-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHH
Q 009700 229 CRGKPP-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRT 307 (528)
Q Consensus 229 ~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~ 307 (528)
+...+. .......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 987522 1222335789999999999999999999999999999988888888888999999999999999999999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
|++++.+++...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+ +++.++.+++.|++|.|+.++.++++.++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 999999999999999974 78888889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++..++..++.+|.+++...
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875422 24567778899999999999999999999999999998543
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.3e-36 Score=311.49 Aligned_cols=367 Identities=25% Similarity=0.339 Sum_probs=326.3
Q ss_pred ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.+++ +.++..|+++|.++.... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 57999999999877 999999999999998863 456778889999999999999987 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLL-GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
+..+.+.|+++.|+.+| .+.++.++..++|+|++++...+... .....|+++.|+.++ .+.+..++..++|+|++++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 56889999999999999998764333 334578999999999 7788999999999999999
Q ss_pred CCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHH
Q 009700 230 RGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-STTVLVPALRT 307 (528)
Q Consensus 230 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~ 307 (528)
...+.. ......+++|.|+.+|.++++.++..++++|++++...+...+.+++.|+++.|+.+|.+. ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 774322 1223358899999999999999999999999999998888888899999999999999998 99999999999
Q ss_pred HhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHH
Q 009700 308 VGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVK 386 (528)
Q Consensus 308 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 386 (528)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++.++++.++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888889999999999999998 999999999999999975 78999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 387 KEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 387 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
..|+++|.+++..+.. .....+.+.|+++.+..+..+.++++...+..++.+++...
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999874322 35677778999999999999999999999999999887654
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.3e-36 Score=311.45 Aligned_cols=368 Identities=26% Similarity=0.347 Sum_probs=325.9
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.++ ++.++..|+++|.+++... ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 5799999999987 8999999999999998763 445677888999999999999887 999999999999999988899
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~ 229 (528)
+..+...|+++.|+.+|.+.++.++..++|+|++++... +. .......++++.|+.++ .+.++.++..++|+|.+|+
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-PDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-CCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-CcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999765 33 23445678999999999 6778999999999999999
Q ss_pred CCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 230 RGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 230 ~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
...+.... ....+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87532222 22258899999999999999999999999999998888888889999999999999999999999999999
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SR--SQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+ +..+.+++.|++|.|+.++.+.++.+
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 999998888888888999999999999988 999999999999999874 45 78888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCH----------HHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 386 KKEASWAISNATSGGTR----------EQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+..|+++|.+++..+.. .....+.+.|+++.|..++.++++++...+..+|.+++...+
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999999999874322 245677889999999999999999999999999999886543
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.3e-34 Score=309.62 Aligned_cols=393 Identities=19% Similarity=0.213 Sum_probs=335.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
+.++.|++.|+++++.++..|+++|.+++... ......+.+.|++|.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 57899999999999999999999999998874 455666778999999999999877 8999999999999998889999
Q ss_pred HHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
..+.+.|+++.|+.+|.+.+ ...+..++.+|.+++.. +..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998854 56777899999999964 55788889999999999999 66678899999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-C-hhhHHHHHHHH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-S-TTVLVPALRTV 308 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~al~~L 308 (528)
..+. .....+++|.|+.++.+.+++++..++|+|++|+...++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 233478999999999999999999999999999999888888999999999999999863 3 38999999999
Q ss_pred hHhhcCCcc---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 309 GNIVTGDDT---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 309 ~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
++++..... ....+...++++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|++|.|+.+|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 13467788999999999998833599999999999998854 44577889999999999998765444
Q ss_pred ----------------------HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 386 ----------------------KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ----------------------~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
+..++.+|++++. ++.....+.+.|+++.|+.+|.+.++.++..++.+|.++....
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 624 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence 4455666666664 3555566789999999999999999999999999999987321
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHH
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKA 485 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a 485 (528)
.+...|.+.||++.|..|+++++++|+..|
T Consensus 625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 257888999999999999999999996553
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.7e-35 Score=298.12 Aligned_cols=368 Identities=18% Similarity=0.204 Sum_probs=306.2
Q ss_pred HhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009700 112 IRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGD-SP 190 (528)
Q Consensus 112 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~ 190 (528)
...+.+|.|+.+|.+++ +++|..|+++|.+++.++++.+..+++.|+||.|+.+|.++++.+++.|+|+|.||+.. ++
T Consensus 45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34678999999999988 99999999999999998999999999999999999999999999999999999999985 68
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc------------------
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF------------------ 252 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------------------ 252 (528)
.++..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|+.++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 899999999999999999955567889999999999999864 3334444678999998761
Q ss_pred CCCHHHHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCc---------
Q 009700 253 SSDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDD--------- 316 (528)
Q Consensus 253 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~--------- 316 (528)
..+++++..+.++|.||+...++..+.+.+. |+++.|+.++.+ .+....+.|+++|.|++....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2368999999999999999887777777775 677899999874 466789999999999986521
Q ss_pred ----------------chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCcHHHHHH
Q 009700 317 ----------------TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR---SQIQAVI-EANIIAPLVY 376 (528)
Q Consensus 317 ----------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~ 376 (528)
...+.+.+.++++.++.+|..+.++.+++.|+|+|.||+++.. ..++..+ +.+++|.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 1122334456677889999654489999999999999998652 2334344 5788999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--------ChHHHHHHHHHHHHHHHhhhhchh
Q 009700 377 LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKIGEADKE 448 (528)
Q Consensus 377 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~~~~~~l~~l~~i~~~~~~~~~ 448 (528)
+|.+++..++..|+|+|.|++.+... +.++..|+++.|+.+|.+. ..+++..++.+|.+++...+.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~--- 436 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE--- 436 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH---
Confidence 99999999999999999999986432 2344778999999999876 357888899999999866543
Q ss_pred ccCCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Q 009700 449 AGSTTANVYSEMIDECDGLDKIENLQSHD--NNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 449 ~~~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~a~~ii~~~~~~ 495 (528)
....+.+.||++.|..|..+. .+.+.+.|..++.+++..
T Consensus 437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 255677999999999998775 899999999999988764
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=290.43 Aligned_cols=328 Identities=18% Similarity=0.179 Sum_probs=276.8
Q ss_pred hhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcH----------HHHHHhhcCC
Q 009700 70 KLESIPSMVQGVLSE------------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVV----------PRFVEFLDRH 127 (528)
Q Consensus 70 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~Lv~lL~~~ 127 (528)
+-+.+|.|+++|+.. ++++++.|+++|.++++.. .+..+...+.|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 347899999999963 3699999999999999986 5555666677777 7778888765
Q ss_pred C-ChH-----HHH-------HHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009700 128 D-LPQ-----LQF-------EAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-----------ASDDVREQAVWALG 183 (528)
Q Consensus 128 ~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~ 183 (528)
. ..+ ++. +|+|+|.|++. ++++++.+++.|++++|+.+|.. .++.++..|+|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 2 112 444 99999999977 69999999999999999999942 34779999999999
Q ss_pred HhhCCChhHHHHHHh-cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CC-CChhhhHHHHHHHHHHh-cCCCHHHH
Q 009700 184 NVAGDSPSCRDLVLS-HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP-APFDQVRPALAALQHLI-FSSDEEVL 259 (528)
Q Consensus 184 nl~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~l~~L~~ll-~~~d~~v~ 259 (528)
|+|.+.+..+..+.. .|++++|+.+| .+++.+++..++|+|.||+... +. .......|++|.|+.+| .+.+..++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~ 304 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence 999888777777654 56699999999 6788999999999999999852 21 22233478999999975 56789999
Q ss_pred HHHHHHHHhhccCChHHHHHHH-HhCcHHHHHHHhcCCCh----hhHHHHHHHHhHhhc---CCcchhHHHhccCChHHH
Q 009700 260 TDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHSST----TVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRL 331 (528)
Q Consensus 260 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L 331 (528)
+.++.+|++|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. +++...+.+.+.|+++.|
T Consensus 305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L 384 (458)
T 3nmz_A 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence 9999999999985555555565 68999999999998654 489999999999997 678888889999999999
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 332 YQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 332 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
+.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|+.++.+++..+++.|+|+|.|++.+.+
T Consensus 385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999998 99999999999999998899999999999999999999999999999999999999998653
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.9e-34 Score=295.28 Aligned_cols=403 Identities=17% Similarity=0.153 Sum_probs=336.0
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.|.+ +++.++..|+..|+++... ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998665 457788889999999999999988 999999999999999977778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|++|.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.++.++........+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666667788889999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
.+.........++++.|+.++.+.+++++..++|++.+++...+... ...++++.|+.++.+.++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64333333346899999999999999999999999999998654221 123689999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHHccCC-hHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRS---QIQAVIEANIIAPLVYLLQHAE-FEV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v 385 (528)
++..++.....+.+.|+++.|+.+|.+.. ++.++..|+++|+|++.+++. ....+.+.|++|.|+.++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99988777888999999999999998641 479999999999999875433 4567778999999999999886 599
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHH----------------------HHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~----------------------i~~~~ 443 (528)
+..|+|+|+|++.+. +....+.+.|+++.|+.++.+.+++++..+.+++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999843 334678899999999999987777776655555544 33211
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.....+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 124557789999999999999999999999999888754
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=292.73 Aligned_cols=403 Identities=18% Similarity=0.173 Sum_probs=340.3
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLSE-NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.+++.|.++ ++.++..|+..|+++... ......+.+.|++|.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 3588999999864 899999999999987665 457788889999999999999988 999999999999999977778
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888999999999999999999666667888999999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6443333444689999999999999999999999999999764321 1112689999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCcHHHHHHHHccCC-hHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSR--SQIQ-AVIEANIIAPLVYLLQHAE-FEV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v 385 (528)
++...+...+.+.+.|+++.|+.+|.+..+ +.++..|+++|+||+...+ ...+ .+++.|++|.|+++|.+.+ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999887778888999999999999987523 7999999999999987433 2333 4678999999999999875 799
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~~l~~l~~i~~~~ 443 (528)
++.|+|+|+|++.+. +....+.+.|+++.|+.++...+ .+++..++.+|.+++...
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999853 33477889999999999997643 345667777777777543
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
. ....+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 24567789999999999999999999999988877654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.7e-32 Score=295.10 Aligned_cols=402 Identities=17% Similarity=0.176 Sum_probs=337.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+.++.|++.|.+ .++.++..|+.+|+++... ..+...+.+.|++|.|+.+|++++ +.++..|+++|.+++..++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 358899999985 4899999999999997654 455778888999999999999988 999999999999999977788
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888999999999999999999655566677889999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5433333334788999999999999999999999999999765321 1123589999999999999999999999999
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHHccCCh-HH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSRS---QIQAVIEANIIAPLVYLLQHAEF-EV 385 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v 385 (528)
++.+.+.....+.+.|+++.|+.+|.+..+ ..++..|+++|+||+..+++ ....+...|++|.|+.+|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888778888999999999999987423 38999999999999875433 23466789999999999998874 99
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKIG 443 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~~l~~l~~i~~~~ 443 (528)
++.|+|+|+|++.+ ++....+.+.|+++.|+.+|.+.+ .+++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999983 444578889999999999997543 345666777777776321
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
. ....+.+.|+++.|..+..+++++++..|...+.++.
T Consensus 584 -~-----------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 -H-----------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp -H-----------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -h-----------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3456778999999999999999999999988877664
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.1e-30 Score=250.52 Aligned_cols=273 Identities=18% Similarity=0.165 Sum_probs=237.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc----------chhhHHHHHHHHHhhhhcCCCCCCChhh
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE----------HSKLSMLRNATWTLSNFCRGKPPAPFDQ 239 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 239 (528)
+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|.. ..++.+++.++|+|.||+.+++......
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456667899999999988 6799999999999999999942 2357899999999999998864233322
Q ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHh-cCCChhhHHHHHHHHhHhhcCC
Q 009700 240 --VRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-LHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 240 --~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~~l~~~~ 315 (528)
..+++|.|+.+|.+++++++..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+++|+|++..+
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 367799999999999999999999999999985 566788889999999999975 6678899999999999999866
Q ss_pred cchhHHHh-ccCChHHHHHHhcccCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHH
Q 009700 316 DTQTQCVI-DNQGLPRLYQLLTQNYKK----SIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKK 387 (528)
Q Consensus 316 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 387 (528)
+.....+. ..|+++.|+.+|.++ ++ .+++.|+|+|.|++. ++++.++.+.+.|++|.|+.+|.+++..+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 55444455 789999999999876 43 499999999999997 7899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 388 EASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 388 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+|+|+|.|++.. ++++...+.+.|+++.|+.++.++++.+++.++++|.+++...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999874 678899999999999999999999999999999999999987544
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.3e-31 Score=253.81 Aligned_cols=270 Identities=20% Similarity=0.183 Sum_probs=234.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhHHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGS-----------ASDDVREQAVWALGNVAGDSPSCRDLVLS 198 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~~~~ 198 (528)
...+.+|+|+|.|++. ++++++.+++.|+++.|+.+|.. .++.++..|+|+|.|+|.+.+..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556689999999998 58999999999999999999942 34789999999999999888777777754
Q ss_pred -cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CC-CChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCh
Q 009700 199 -HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PP-APFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 199 -~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
.|++++|+.+| .+++++++..++|+|.||+... +. .......+++|.|+.+| .+.+.++++.++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 7888999999999999999852 22 22233478999999974 66789999999999999998666
Q ss_pred HHHHHHH-HhCcHHHHHHHhcCCCh----hhHHHHHHHHhHhhc---CCcchhHHHhccCChHHHHHHhcccCchhHHHH
Q 009700 275 DKIQAVI-EAGVCPRLVELLLHSST----TVLVPALRTVGNIVT---GDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKE 346 (528)
Q Consensus 275 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 346 (528)
+....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +++...+.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555666 68999999999988654 489999999999997 6777888899999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCH
Q 009700 347 ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 347 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+|+|.|++.+.+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988999999999999999999999999999999999999999997543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=2.9e-27 Score=220.53 Aligned_cols=240 Identities=29% Similarity=0.434 Sum_probs=222.0
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
|.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56999999999988 99999999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......++++.|+.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999754322 22334689999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 009700 354 ITAG 357 (528)
Q Consensus 354 l~~~ 357 (528)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=3.5e-27 Score=221.94 Aligned_cols=235 Identities=16% Similarity=0.171 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHH-HhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL 334 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 334 (528)
.+-+..|+..|.+++...+ +...+...|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567788899999998644 6677888999999999 9999999999999999999999999888899999999999999
Q ss_pred hcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCCh
Q 009700 335 LTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCI 414 (528)
Q Consensus 335 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l 414 (528)
|.++.+..+++.|+|+|+|++.+++...+.+.+.|++|.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999999999998999999999999999999999999999999999986 57888999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 009700 415 KPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD-NNEIYEKAVKLLERYW 493 (528)
Q Consensus 415 ~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~-~~~v~~~a~~ii~~~~ 493 (528)
+.|+.+|.+++++++..++.+|.+++...+..........+.+..++++ .++.|+.++ +.++|++|..|+++||
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987554322111112446777764 477888776 8999999999999999
Q ss_pred CCCc
Q 009700 494 VEEE 497 (528)
Q Consensus 494 ~~~~ 497 (528)
++++
T Consensus 287 ~~~~ 290 (296)
T 1xqr_A 287 SSPA 290 (296)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=7.3e-27 Score=217.79 Aligned_cols=241 Identities=29% Similarity=0.440 Sum_probs=222.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCC-CC
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPP-AP 236 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 236 (528)
|.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|+.++ .+++..++..++|+|.+++...+. ..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5789999999999999999999999999999888899999999999999999 677899999999999999987532 22
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
.....++++.|+.++.+++++++..++|+|.+++...++....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 33346899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
...+.+.+.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+.+.|+++.|++++.++++.++..|+++|.|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8777889999999999999988 999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009700 397 TSGG 400 (528)
Q Consensus 397 ~~~~ 400 (528)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.4e-27 Score=221.21 Aligned_cols=239 Identities=34% Similarity=0.526 Sum_probs=219.6
Q ss_pred CcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 115 GVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 115 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45899999999998 89999999999887776778888899999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886433 33445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 009700 354 ITA 356 (528)
Q Consensus 354 l~~ 356 (528)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=9.9e-27 Score=216.99 Aligned_cols=239 Identities=36% Similarity=0.535 Sum_probs=217.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
..++.+++.|++++++++..|++.|+++++.. .+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 35789999999999999999999999988873 677888999999999999999988 9999999999999999899999
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988775548889999999999999 677899999999999999987
Q ss_pred CCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 232 KPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 232 ~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
.+... .....+++|.|+.++.++++.++..++++|++++...++....+.+.|+++.|+.++.+.++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 53222 22337889999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 009700 311 IVT 313 (528)
Q Consensus 311 l~~ 313 (528)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.2e-24 Score=219.78 Aligned_cols=321 Identities=10% Similarity=0.119 Sum_probs=256.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh---
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSE--- 149 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--- 149 (528)
.+.+++.+.+++...+..|+..|..+... ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 56677788887766788899999977543 34444454 4677999999999633378999999999999984321
Q ss_pred -----------------------------------hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 150 -----------------------------------HTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 150 -----------------------------------~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|.
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~ 492 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIP 492 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence 345677899999999999999999999999999999976 66899
Q ss_pred HHHhcCChHHHHHhhccchhh--HHHHHHHHHhhhhcCCC-CCCChh--hhHHHHHHHHHHhcC-CCH------------
Q 009700 195 LVLSHGALMPLLAQLNEHSKL--SMLRNATWTLSNFCRGK-PPAPFD--QVRPALAALQHLIFS-SDE------------ 256 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~d~------------ 256 (528)
.+.+.|++++|+.++....+. ..+..|+++|.+++... |...+. ...+++|.|+.+|.. ++.
T Consensus 493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~ 572 (778)
T 3opb_A 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572 (778)
T ss_dssp HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence 999999999999999554433 28899999999998543 221110 113899999999983 211
Q ss_pred -HHHHHHHHHHHhhccCCh----HHHHHHHHh-CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccC----
Q 009700 257 -EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ---- 326 (528)
Q Consensus 257 -~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---- 326 (528)
--...|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+
T Consensus 573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~ 652 (778)
T 3opb_A 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQS 652 (778)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchh
Confidence 126789999999999862 334667774 8999999999999999999999999999985543222344322
Q ss_pred --ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CcHHHHHHHHcc--CChHHHHHHHHHHHHhcC
Q 009700 327 --GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEA-NIIAPLVYLLQH--AEFEVKKEASWAISNATS 398 (528)
Q Consensus 327 --~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~ 398 (528)
-++.|+.++..+ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.. ++..++..++.++.|++.
T Consensus 653 ~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 653 LRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999888 99999999999999988788888888876 799999999999 899999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=208.41 Aligned_cols=398 Identities=12% Similarity=0.096 Sum_probs=298.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
.+.+...+.++.......++..+-+.++. +..++..+..+.++.|.+++++ ..++..|+-+|+.+..........
T Consensus 257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~s 331 (778)
T 3opb_A 257 SKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCIN 331 (778)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCC
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCc
Confidence 56666666554433344444445555565 4566777778889999999964 478999999999988733221111
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH-hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL-SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
+. ...+.+.++|..++.+-+..|++.|+.++.+.. .|+.+. +.+++..|+.++....+.++...++.+|.|++...
T Consensus 332 i~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 332 LK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred HH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 11 255778888888776679999999999976654 666655 45669999999954567889999999999999865
Q ss_pred CCCCh---------------------------------------hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 233 PPAPF---------------------------------------DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 233 ~~~~~---------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
+.... ....|++|.|+.++.++++.++..++|+|.+++..
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 32100 01257899999999999999999999999999966
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChh---hHHHHHHHHhHhhcCCcchhHHHhc----cCChHHHHHHhcc-cCch----
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTT---VLVPALRTVGNIVTGDDTQTQCVID----NQGLPRLYQLLTQ-NYKK---- 341 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~al~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---- 341 (528)
.+....+++.|+++.|+.+|.+.... .+..|+.+|++++...+... ++. .|++++|+.+|.. +...
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccc
Confidence 56788899999999999999887544 79999999999985443221 111 3889999999983 2111
Q ss_pred --------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH-HH
Q 009700 342 --------SIKKEACWTISNITAGS----RSQIQAVIEA-NIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI-QF 407 (528)
Q Consensus 342 --------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~ 407 (528)
.-+.+|+.+|.||+..+ .+..+.++.. |++|.|..+|.+++..+|+.|+++++|++.. ++.+ ..
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k 643 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAK 643 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGG
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHH
Confidence 12789999999999865 3446778885 9999999999999999999999999999983 3432 23
Q ss_pred HHHC------CChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC--CCH
Q 009700 408 LVSQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH--DNN 479 (528)
Q Consensus 408 l~~~------~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~--~~~ 479 (528)
+... +.++.|+.+++.+|.+++..+.++|.++....+.. ....++..+|++.+..+... +++
T Consensus 644 ~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~~ 713 (778)
T 3opb_A 644 FFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDDI 713 (778)
T ss_dssp TSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTCH
T ss_pred HHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCCH
Confidence 3211 23889999999999999999999999987554432 13444445889998888766 899
Q ss_pred HHHHHHHHHHHHhcC
Q 009700 480 EIYEKAVKLLERYWV 494 (528)
Q Consensus 480 ~v~~~a~~ii~~~~~ 494 (528)
+++.++..++.+++.
T Consensus 714 ~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 714 ELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=6.2e-23 Score=185.55 Aligned_cols=198 Identities=38% Similarity=0.543 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
.+..+.|..++.++|++++..++|+|.+++..+++....+++.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56788999999999999999999999999988888889999999999999999999999999999999999998888888
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+++.|++|.|+.++.++++.++..|+++|.|++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
+++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=7e-23 Score=185.19 Aligned_cols=199 Identities=33% Similarity=0.488 Sum_probs=181.4
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
..|..|.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999988 999999999999999889999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSD 271 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~ 271 (528)
+..+.+.|+++.|+.+| .+++..++..++|+|.+++...+... .....+++|.|+.++.+++++++..++|+|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 77789999999999999998653322 23347899999999999999999999999999999
Q ss_pred CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 272 GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 272 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
..++....+.+.|+++.|+.++.+.++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.6e-22 Score=188.74 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQ 208 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~l 208 (528)
.+-+..|+..|.+++. +.++...+++.|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhhhhcCCCCCCC-hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHH
Q 009700 209 LNEHSKLSMLRNATWTLSNFCRGKPPAP-FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 287 (528)
Q Consensus 209 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 287 (528)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|.+++..++..++|+|++++.++++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9555678999999999999998864322 233368999999999999999999999999999988888899999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 288 RLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 288 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
.|+.+|.+++..++..|+++|++++.+.+.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999988543
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=172.21 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=171.6
Q ss_pred cHHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 116 VVPRFVEFLDRHDLP--QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+|.|+++|.+++ + +++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++++++.|+|+|.||+.+++.++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998889999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc----------------CCCHH
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF----------------SSDEE 257 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~ 257 (528)
..+.+.|++++|+.+|..+.+.+++++++.+|++|+..... ......+++|.|+.++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995467889999999999999976432 33444678898887652 13679
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHh-CcHHHHHHHhcC------CChhhHHHHHHHHhHhhcC
Q 009700 258 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLLH------SSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 258 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~ 314 (528)
++.++.++|.||+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877788888876 788999999975 2557899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=168.90 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=165.1
Q ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 73 SIPSMVQGVLSENS--GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
.++.++++|.++++ +++..|+..++++.... .++...+++.|++|.|+++|.+++ +++|..|+|+|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999988 88999999999887653 566778889999999999999988 999999999999999988999
Q ss_pred HHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc---------------chh
Q 009700 151 TRVVIEHGAVPKFVQLLG-SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE---------------HSK 214 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~---------------~~~ 214 (528)
+..+.+.|++|.|+++|. +++.++++.++.+|+|++.... ++..+.+. ++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5789999999999999987654 67777764 68999887620 125
Q ss_pred hHHHHHHHHHhhhhcCCCCCCChhh--hHHHHHHHHHHhcC------CCHHHHHHHHHHHHhhccC
Q 009700 215 LSMLRNATWTLSNFCRGKPPAPFDQ--VRPALAALQHLIFS------SDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 215 ~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~ 272 (528)
..++.+++++|.||+...+.....+ ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998653333322 35789999999874 2678899999999999864
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=1.6e-18 Score=189.72 Aligned_cols=353 Identities=14% Similarity=0.152 Sum_probs=261.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+.+++.+.++++.++..++.++..++.......+ .+++|.|++.+.+++ +.++..|+.+|..++...+.....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 4567778888889999999999999886422223 457999999999887 8999999999999987433221110
Q ss_pred H----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 155 I----EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 155 ~----~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
. -..++|.+++++.++++.+|..|+++|++++...+...... -..+++.++..+ .+++..++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12357778888888999999999999999886544211000 113567777777 67788999999999999998
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHh-----------cC-
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------LH- 295 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------~~- 295 (528)
..+......+..+++.+..++.+.+++++..+++++..+++.... ...+.. .+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 754333344567899999999999999999999999999875421 111111 3566666666 23
Q ss_pred ----------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 296 ----------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 296 ----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
.++.++..|..+++.++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34567899999999998654432 222 4677888888888 99999999999999998877655543
Q ss_pred HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-HHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 366 IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-QIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
+ .+++|.++..+.++++.||..|+|++++++...... ...+ -.++++.|+..+.+.++.++..++++|.+++....
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 458999999999999999999999999988632110 0111 12467888888988899999999999999998665
Q ss_pred h
Q 009700 445 A 445 (528)
Q Consensus 445 ~ 445 (528)
.
T Consensus 475 ~ 475 (852)
T 4fdd_A 475 T 475 (852)
T ss_dssp G
T ss_pred H
Confidence 3
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=7e-18 Score=176.97 Aligned_cols=381 Identities=13% Similarity=0.131 Sum_probs=264.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
+|.+...+.++++.++..|+..|..+.... +. ......++|.+..++.+++ ..++..|+.+|+.++..... .
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~ 276 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence 344444444444555555555554444331 11 0112235677777776665 67777787777777652111 1
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.....+++.+..++.++++.+|..|+++|+.++...+ ..+.......+++.+..++ .++++.++..++++|..++..-
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~ 355 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL 355 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence 1223568888899998899999999999999985432 2121112234567777777 7788999999999999997542
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
.. ......++|.+..++.+.+++++..++.++..++...... . ....+++.+..++.+.++.++..++.+++.++
T Consensus 356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11 1223567888999999889999999999998887543211 1 12247888999999999999999999999998
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWA 392 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 392 (528)
...... .+...+++.+..+|.++ +..+|..|+.+++.++...... .....++|.|..++.++++.+|..++++
T Consensus 431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 532221 12234678888999888 8999999999999998632111 1224588999988888899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHH
Q 009700 393 ISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIEN 472 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 472 (528)
++.++...+.+. ....+++.|..+++++++.++..+++++..+....+.. +. ....+..|..
T Consensus 504 l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------~~----~~~~~p~l~~ 565 (588)
T 1b3u_A 504 INVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------TL----QSEVKPILEK 565 (588)
T ss_dssp HHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------HH----HHHHHHHHHH
T ss_pred HHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------hh----HHHHHHHHHH
Confidence 999976432221 22358899999999999999999999999998654211 11 1233567778
Q ss_pred HhcCCCHHHHHHHHHHHHHhc
Q 009700 473 LQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 473 L~~~~~~~v~~~a~~ii~~~~ 493 (528)
+..+++.+|+..|...+..+-
T Consensus 566 l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTTCSSHHHHHHHHHHHHHTT
T ss_pred HcCCCchhHHHHHHHHHHHhh
Confidence 889999999999999988663
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=1.7e-17 Score=173.99 Aligned_cols=380 Identities=10% Similarity=0.093 Sum_probs=284.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRV 153 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (528)
++.+.+.+.++++.++..|+..|..+....+ . ......++|.|..++++++ +.++..|+.+|..++...+..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--- 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--L--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--H--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--H--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH---
Confidence 5566667778889999999999998876531 1 1223567899999998887 899999999999988733221
Q ss_pred HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC
Q 009700 154 VIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 154 i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.....++|.+..++.++++.+|..++.+|+.++..... .......++.++.++ .++++.++..++++|..++...+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence 12234788888999989999999999999999843211 112234678888888 77889999999999999987653
Q ss_pred CCCh--hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 234 PAPF--DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 234 ~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.... .....++|.+..++.+.++.++..+++++..++..-... . ....+++.+..++.+.++.++..++.+++.+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--H-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 2211 345678899999999999999999999999987532211 1 1224788899999999999999999999988
Q ss_pred hcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHH
Q 009700 312 VTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEAS 390 (528)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 390 (528)
+...... .....+++.+..++.+. +..+|..++.+++.++.. ..+ .+...++|.+...+.+.+..+|..|+
T Consensus 391 ~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 391 NEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7643321 11234677888888887 899999999999998751 111 11223688899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHH
Q 009700 391 WAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKI 470 (528)
Q Consensus 391 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 470 (528)
.+++.++....++. ....+++.|..++.++++.++..+++++..+....+.. .+.. ..++.|
T Consensus 463 ~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---------~~~~-----~~~~~l 524 (588)
T 1b3u_A 463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------ITTK-----HMLPTV 524 (588)
T ss_dssp HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HTHHHH
T ss_pred HHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH---------HHHH-----HHHHHH
Confidence 99999987544332 12347888888888899999999999999988754321 1222 346777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 471 ENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 471 ~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..+..+++++|+..+.+.+..++.
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HhhCCCCCchHHHHHHHHHHHHHH
Confidence 778889999999999888888764
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=2.8e-17 Score=179.95 Aligned_cols=392 Identities=15% Similarity=0.129 Sum_probs=278.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVI 155 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 155 (528)
.++..+.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.++..++.+++.++...... .
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~ 125 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N 125 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence 3444445678899999999999988652 111222223445677788888777 899999999999998733110 0
Q ss_pred hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH----hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 156 EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL----SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 156 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~----~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-. -..+++.++..+ .+++..++..++++|..+...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence 135789999999999999999999999999865443211100 112456666777 677889999999999998866
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
.+.........+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+.+.++.++..|+.++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 432222334678899999999999999999999999999877655444443 4788888999999999999999999998
Q ss_pred hcCCcchhHHHhc---cCChHHHHHHh-----------cc--c--------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009700 312 VTGDDTQTQCVID---NQGLPRLYQLL-----------TQ--N--------YKKSIKKEACWTISNITAGSRSQIQAVIE 367 (528)
Q Consensus 312 ~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 367 (528)
+..... .. .+. ..+++.++..+ .+ . .+..+|+.|+.+++.++...++. ++.
T Consensus 284 ~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~ 358 (852)
T 4fdd_A 284 AEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP 358 (852)
T ss_dssp TTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GHH
T ss_pred hcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH
Confidence 864321 11 111 13455666665 22 0 13467999999999997633221 222
Q ss_pred cCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhch
Q 009700 368 ANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADK 447 (528)
Q Consensus 368 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~ 447 (528)
.++|.+...+.+.++.+|..|+++|++++.+... ..... -.++++.++.+++++++.++..+++++.++........
T Consensus 359 -~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 359 -HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp -HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 3678888888899999999999999999987543 32221 13478999999999999999999999999987543321
Q ss_pred hccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 448 EAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 448 ~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
..++.. +.+..|.....++++.++..|...+..+..
T Consensus 436 ------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 436 ------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 111221 234566666667899999999999988764
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.76 E-value=8.4e-17 Score=168.08 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=237.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+.+.+.++++.++..|+.++.++.. ..... .++|.+.++|.+++ +.++..|++++.++...+++..
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~- 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV- 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc-
Confidence 45667777888899999888888876642 12222 24788999999887 9999999999999998666533
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
...+.++.+..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++-.+..++.++..++...
T Consensus 157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 2246789999999999999999999999999987763210001112356677776 4556777778888888777432
Q ss_pred CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 233 PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
......+++.+..++++.++.|+..|++++.++... +++..+.+.. .+.+.|+.++. +++.++..|+.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888898999999999999999999998752 2334443333 36677776664 78899999999999
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.++...+..... .+..+. .+.+. +..+|..|++++.+++... .+. .+++.|...+.+.+.++|..+
T Consensus 308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~ 373 (591)
T 2vgl_B 308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA 373 (591)
T ss_dssp HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence 998765543221 111111 11233 5778899999998887532 222 246667777888888899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+++++.++.... .... .+++.|++++...+..+...++.++..++...+.
T Consensus 374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc
Confidence 999999887643 2222 2467888888888888777777788887765543
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=5.7e-15 Score=148.27 Aligned_cols=416 Identities=13% Similarity=0.146 Sum_probs=294.2
Q ss_pred ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcccCCc----------------hhHHHH-hcCcHHHHHHhhcCCCChHH
Q 009700 72 ESIPSMVQGVLS--ENSGLQLEATTQFRKLLSIERCP----------------PIEEVI-RAGVVPRFVEFLDRHDLPQL 132 (528)
Q Consensus 72 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~i~~Lv~lL~~~~~~~v 132 (528)
.+++.++..|+. .|.++...++..|.++++....+ ..+.++ +.+.++.|+.+|++.+ -.+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 368999999985 57888888999998887754221 122333 4678999999999888 899
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc
Q 009700 133 QFEAAWALTNIASGTSE-HTRVVIEH-GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN 210 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~ 210 (528)
+..++.+|..++...++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+++.+++..++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997777 66667754 89999999999999999999999999999999999999999999999999994
Q ss_pred cch---hhHHHHHHHHHhhhhcCCCC-CCChhhhHHHHHHHHHHhcCCCHH------HHHH---HHHHHHhhccC-----
Q 009700 211 EHS---KLSMLRNATWTLSNFCRGKP-PAPFDQVRPALAALQHLIFSSDEE------VLTD---ACWALSYLSDG----- 272 (528)
Q Consensus 211 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~----- 272 (528)
... ...+...|+.++.+|.+.++ ........+++|.|..++..+++. ...+ ++.++.-++..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23678899999999999974 333344478899999988754321 2333 44555555543
Q ss_pred -ChHHHHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHHHhHhhcCCcchhHHHhccC---------ChHHHHHHhcccCc
Q 009700 273 -TNDKIQAVIEAGVCPRLVELLLHS--STTVLVPALRTVGNIVTGDDTQTQCVIDNQ---------GLPRLYQLLTQNYK 340 (528)
Q Consensus 273 -~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~ 340 (528)
...+...+.+.|+++.+++++... ...++..|+.+++.+..+++...+.+.... ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 224556778889999999998875 567899999999999999887555554321 33334455655546
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CcH---HHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHH
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEA----------NII---APLVYLLQHAEFEVKKEASWAISNATSGGTREQIQF 407 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 407 (528)
..+|.+|+.++..+..++++....++.. +.+ ..+..-+.+.|+----.|+.+|.++.... ++....
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n-~~~K~~ 457 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN-ATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 8899999999999998887665555532 111 13445555666644445788888888853 443333
Q ss_pred HHH--------C---CChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-
Q 009700 408 LVS--------Q---GCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ- 474 (528)
Q Consensus 408 l~~--------~---~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~- 474 (528)
+.. . -+++.+..+|.. .++.+....+..|...+..++.. ...++.+...+..|....
T Consensus 458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A----------V~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA----------VTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH----------HHHHHHSTTHHHHHHHHHH
T ss_pred HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH----------HHHHHcCCchHHHHHHHHH
Confidence 322 1 125555666543 56777666677776666655433 566776666677666543
Q ss_pred cC-C--CHHHHHHHHHHHHHhcCCCccc
Q 009700 475 SH-D--NNEIYEKAVKLLERYWVEEEDD 499 (528)
Q Consensus 475 ~~-~--~~~v~~~a~~ii~~~~~~~~~~ 499 (528)
++ . +.-|+-.+.-++.-+|....++
T Consensus 528 ~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 528 ENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred hccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 32 2 2347788888887777655443
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=2.6e-15 Score=150.70 Aligned_cols=368 Identities=17% Similarity=0.159 Sum_probs=272.5
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChh
Q 009700 72 ESIPSMVQGVLS-ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRH-DLPQLQFEAAWALTNIASGTSE 149 (528)
Q Consensus 72 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~ 149 (528)
+.|+.|...+.+ .-.+-|..|+..|+.+.... +..+.++++|.|+..|+.+ ++.++...++..|.++...+++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 468899998885 45788999999999885432 2233456799999999764 3578888899999988774432
Q ss_pred -----------------hHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-HHHHHHh-cCChHHHHHhh
Q 009700 150 -----------------HTRVVI-EHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS-CRDLVLS-HGALMPLLAQL 209 (528)
Q Consensus 150 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-~~~~~~~-~g~i~~Ll~ll 209 (528)
..+.+. +.+.++.|+.+|++.+..+|-.++.+|..++...+. .++.++. .++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 223443 357899999999999999999999999999988877 7787774 48999999999
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhh-hHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhccCChHHHHHHHHhC
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQ-VRPALAALQHLIFSSD----EEVLTDACWALSYLSDGTNDKIQAVIEAG 284 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 284 (528)
++..+.++..++..|.+|+.+.+..+... .+++++.|+.++..+. ..+..+++.++.+|...+..+...+.+.+
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 77788999999999999999975555444 4699999999998654 47899999999999999988888889999
Q ss_pred cHHHHHHHhcCCChh------hHHH---HHHHHhHhhcCCc------chhHHHhccCChHHHHHHhcccC-chhHHHHHH
Q 009700 285 VCPRLVELLLHSSTT------VLVP---ALRTVGNIVTGDD------TQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEAC 348 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~------v~~~---al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 348 (528)
+++.|..+|..+... ...+ ++.++.-++.... .....+.+.|++..++.++..+. ...++.+|+
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 2223 5666666665532 23446788999999999987653 567999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------cHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHC----C--
Q 009700 349 WTISNITAGSRSQIQAVIEAN---------IIAPLVYLLQHA-EFEVKKEASWAISNATSGGTREQIQFLVSQ----G-- 412 (528)
Q Consensus 349 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~-- 412 (528)
.+++.+..+++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..++...+ ..+... .
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q-~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ-GEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH-HHHHHhcCCcccc
Confidence 999999999998887776533 333344445444 58999999999999998653222 222221 1
Q ss_pred ----Ch---HHHHhhcCCCChHHHHHHHHHHHHHHHhhhhc
Q 009700 413 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 413 ----~l---~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
.+ ..++.-+-+.|+.-.--+.-++..++...+..
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 01 12344444556644333555677777665544
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=8.8e-16 Score=145.01 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=202.0
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC 192 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~ 192 (528)
..+.++.|+..|.+++ +.++..|+++|+++.. + ++++.|+.+|.++++.+|..++++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4567999999999887 9999999999999863 2 35788999999999999999999999986443321
Q ss_pred HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 193 RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 193 ~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
.. .++.+...+..++++.++..++++|..+....+ ......++.|..++.++++.++..++++|+++...
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH
Confidence 11 223333333367789999999999999975432 12346789999999999999999999999987642
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTIS 352 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 352 (528)
+.++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 159 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 159 -----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 478999999999999999999999999853222 3467889999888 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC-CChHHHHH
Q 009700 353 NITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC-PDPRIVTV 431 (528)
Q Consensus 353 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~ 431 (528)
++. +...++.|+..+.+++ ++..|+++|+.+.. + ..++.|..++.. .+++++..
T Consensus 218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHHH
Confidence 985 2357888999998755 89999999998854 1 367788888864 56777777
Q ss_pred HHHHHH
Q 009700 432 CLEGLE 437 (528)
Q Consensus 432 ~l~~l~ 437 (528)
+++.+.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777664
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=3.7e-15 Score=155.65 Aligned_cols=332 Identities=17% Similarity=0.143 Sum_probs=245.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+++...+..+...+..++.. .+.. + .-+++.|.+-|++++ +.++..|+.+|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 467888889999999998888888777653 1211 1 124678888888887 9999999999999864 55444
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +++.+.++|.++++.+|..|++++++++...|+. +.+.+.++.+..+| .++++.++..|+++|..++...
T Consensus 121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 3 3578999999999999999999999998766652 22245678888888 7889999999999999999886
Q ss_pred CCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHh
Q 009700 233 PPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNI 311 (528)
Q Consensus 233 ~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l 311 (528)
+.. ........++.|+..+...++..+..++.++..++...+.... .+++.+..++++.++.++..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 543 3344466778888888888888999999999998866543322 3678888889999999999999999999
Q ss_pred hcC---CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 312 VTG---DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 312 ~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
... ++...+.+. ..+.+.|+.++. + ++.+|..|+.+|+.+....+..... .+..++ .+.+.+..+|..
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE 337 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence 753 233333222 345667776654 6 8999999999999998644432211 111121 222445899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 389 ASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 389 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
|++.|.+++...+. .. +++.|..++...|.+++..++++|..+....+
T Consensus 338 al~~L~~l~~~~nv---~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 338 KLDIMIRLASQANI---AQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHHTCCSSTH---HH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCChhhH---HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 99999999875442 22 46667788888899999888888888876543
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.68 E-value=9.5e-15 Score=160.28 Aligned_cols=356 Identities=14% Similarity=0.205 Sum_probs=248.5
Q ss_pred cHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 73 SIPSMVQGVLSE-------NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 73 ~l~~l~~~l~s~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
.++.++..+... +...+..|...|..+....+.... ..+++.+.+.+.+.+ ..++..|+++++.++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 356777777642 356888888888887765321111 235777788888777 8999999999999998
Q ss_pred CCh-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH---HHHHHhcCChHHHHHhhccchhhHHHHHH
Q 009700 146 GTS-EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC---RDLVLSHGALMPLLAQLNEHSKLSMLRNA 221 (528)
Q Consensus 146 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a 221 (528)
+.. +.....+. .+++.++..+.++++.+|..++|+|+.++...... ...+ ..+++.++..+ .+. +.++..+
T Consensus 399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~a 473 (861)
T 2bpt_A 399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATNC 473 (861)
T ss_dssp SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHHH
Confidence 643 33333332 47889999999999999999999999998432110 0011 12467777777 443 7899999
Q ss_pred HHHhhhhcCCCC----CCChhhhHHHHHHHHHHhcCCC--HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 222 TWTLSNFCRGKP----PAPFDQVRPALAALQHLIFSSD--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 222 ~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+|+|.+++.... .........+++.|..++.+.+ +.++..++.+++.++...+......+. .+++.++..+..
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~ 552 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ 552 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence 999999987532 2222445778889999998544 789999999999998755433333333 256666666542
Q ss_pred C---------------ChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCch-hHHHHHHHHHHHHhcCCH
Q 009700 296 S---------------STTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKK-SIKKEACWTISNITAGSR 359 (528)
Q Consensus 296 ~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~ 359 (528)
. ...++..++.+|+.++...+....... ..+++.+...+.+. +. .++..++++++.++....
T Consensus 553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence 1 345678899999999876554322222 25677888888877 66 899999999999986333
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHH
Q 009700 360 SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLE 437 (528)
Q Consensus 360 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~ 437 (528)
......+. .++|.|+..+.+.++.++..|+.++..++.........++ ..+++.+...+.+.+ +.++..++.++.
T Consensus 631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 32333332 3889999999888899999999999998875443333333 236777788887654 889999999999
Q ss_pred HHHHhhhh
Q 009700 438 NILKIGEA 445 (528)
Q Consensus 438 ~i~~~~~~ 445 (528)
.++...+.
T Consensus 708 ~l~~~~~~ 715 (861)
T 2bpt_A 708 DIASNIGA 715 (861)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhhh
Confidence 99986543
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=1.1e-14 Score=137.54 Aligned_cols=254 Identities=14% Similarity=0.095 Sum_probs=199.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT 151 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 151 (528)
..++.+++.|.++++.++..|+..|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 468999999999999999999999997742 235889999999888 9999999999999875222 11
Q ss_pred HHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 152 RVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 152 ~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.. +++.|. .++.++++.+|..++++|+++....+.... ..++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 234444 246778999999999999999744332222 2467888888 78899999999999998864
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
. ..+|.|..++.++++.++..++++|+.+....+ .+++.|..++.++++.++..|+++|+.
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 268899999999999999999999999864433 256889999999999999999999998
Q ss_pred hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc-CChHHHHHH
Q 009700 311 IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH-AEFEVKKEA 389 (528)
Q Consensus 311 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a 389 (528)
+. +...++.|+..+.++ + ++..|+++|+.+.. ..++|.|..++.+ .+.++...+
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 86 234678899999765 3 89999999999843 2478899999865 467888887
Q ss_pred HHHHH
Q 009700 390 SWAIS 394 (528)
Q Consensus 390 ~~aL~ 394 (528)
..+|.
T Consensus 274 ~~~l~ 278 (280)
T 1oyz_A 274 IDKLK 278 (280)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77764
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.66 E-value=2.5e-14 Score=149.88 Aligned_cols=368 Identities=17% Similarity=0.136 Sum_probs=225.1
Q ss_pred CCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhc------cccCCCCchhhhhhHHHhhccHHHHHHHhcCCCHHHHH
Q 009700 17 KTGVDADEARRRREDNLVEIRKNKREDSLLKKRREG------LILQSQPVTEANASIEKKLESIPSMVQGVLSENSGLQL 90 (528)
Q Consensus 17 k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~------~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~ 90 (528)
++..+.++-+++-.....+||+.-++....+|+... .-.+...+ .....+++.+.+++...+.
T Consensus 20 r~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~-----------~~~~~vik~~~s~~~~~Kr 88 (618)
T 1w63_A 20 RTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAH-----------FGQLECLKLIASQKFTDKR 88 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCG-----------GGHHHHHHHHHSSSHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCc-----------chHHHHHHHHcCCchHHHH
Confidence 333455555555555567777776544322222110 00111000 2456778888899988888
Q ss_pred HHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCC
Q 009700 91 EATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSA 170 (528)
Q Consensus 91 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 170 (528)
.+.-.+..++.. ++.... -++..|.+-|++++ +.++..|+++|+++.. ++... .+++.+.++|.++
T Consensus 89 l~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~~~ 154 (618)
T 1w63_A 89 IGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHcCC
Confidence 887788777654 222111 14778888888888 8999999999999985 43322 3568899999999
Q ss_pred CHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHH
Q 009700 171 SDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHL 250 (528)
Q Consensus 171 ~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l 250 (528)
++.+|..|+.+++++....|+.. .+.++.+..++ .+.++.++..++++|..++...+.. ......++|.++.+
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRI 227 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 99999999999999987666532 24677777888 7788999999999999998764321 12234556666655
Q ss_pred hc---------------CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc------CCChhhHHHHHHHHh
Q 009700 251 IF---------------SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL------HSSTTVLVPALRTVG 309 (528)
Q Consensus 251 l~---------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~al~~L~ 309 (528)
|. ..++..+..++.++..++...++... .+.+.|..++. +.+..+...|++++.
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~ 302 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIM 302 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 54 24777888888888888876543221 23334444332 123456666666666
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.+... +. +.. .+++.|..+|.++ ++.+|..|+.+|+.++...+..++ ...+.++.++.+++..+|..|
T Consensus 303 ~l~~~-~~----l~~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~a 370 (618)
T 1w63_A 303 DIKSE-SG----LRV-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDLDVSIKRRA 370 (618)
T ss_dssp HSCCC-HH----HHH-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSSCHHHHHHH
T ss_pred hcCCC-HH----HHH-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCCChhHHHHH
Confidence 65331 11 111 2345666666666 667777777777777654443221 244556666666666677777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 009700 390 SWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 441 (528)
Q Consensus 390 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~ 441 (528)
+.+|..++...+-+. +++.|..++...|.+++..++.+|..+..
T Consensus 371 lelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 371 MELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 776666665433211 12333344444455555555555555444
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=1.8e-14 Score=157.99 Aligned_cols=400 Identities=12% Similarity=0.127 Sum_probs=267.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH--
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHT-- 151 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-- 151 (528)
++.+.+.+.+.+...+..|+.++..++...........+ ..++|.|+..+.+++ +.++..++|+++.++.......
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 445555667888999999999999988553112222222 347899999998887 9999999999999986311100
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhHHHHHHhcCChHHHHHhhcc-chhhHHHHHHHHHh
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-----PSCRDLVLSHGALMPLLAQLNE-HSKLSMLRNATWTL 225 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~~~~a~~~L 225 (528)
... -..+++.++..+.++ +.++..++++|.+++... ......+ ..+++.++..+.. +.+..++..++.++
T Consensus 449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 000 123578888888775 899999999999997431 1111111 1246667777742 33478999999999
Q ss_pred hhhcCCCCCCChhhhHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHH
Q 009700 226 SNFCRGKPPAPFDQVRPALAALQHLIFSS---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290 (528)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 290 (528)
..++...+.........++|.++..+... ...++..++.++..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99987765433344566777777666521 3457788999999888654432222222 3778888
Q ss_pred HHhcCCCh-hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009700 291 ELLLHSST-TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEAN 369 (528)
Q Consensus 291 ~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 369 (528)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.+. ++.++..++++++.++..........+ ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88888777 89999999999998654433322222 4788888888776 888999999999999864333333333 34
Q ss_pred cHHHHHHHHccCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCC-----------hHHHHHHHHHH
Q 009700 370 IIAPLVYLLQHAE--FEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPD-----------PRIVTVCLEGL 436 (528)
Q Consensus 370 ~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~~~~~~l~~l 436 (528)
+++.++..+.+.+ +.+|..++.+++.++.........++-. +++.+...+.... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7888888888764 8899999999999987544444444433 6777777776432 34678888999
Q ss_pred HHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 009700 437 ENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD----NNEIYEKAVKLLERYWV 494 (528)
Q Consensus 437 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~----~~~v~~~a~~ii~~~~~ 494 (528)
..++........ ...+|...+ ++.|.....+. +..++..|...+..+..
T Consensus 759 ~~i~~~l~~~~~----~~~~~~~~i-----~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 759 VGIVAGLHDKPE----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHTTTCHH----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH----HHHHHHHHH-----HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 888865431100 012233222 34554444442 78999999888887743
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.65 E-value=2.5e-14 Score=157.30 Aligned_cols=400 Identities=16% Similarity=0.168 Sum_probs=250.2
Q ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009700 74 IPSMVQGVLS-------ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASG 146 (528)
Q Consensus 74 l~~l~~~l~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 146 (528)
++.+++.+.. ++...+..|+..+..+....+. .++ ..++|.+...+.+++ +.++..|+++|+.++.+
T Consensus 323 l~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcC
Confidence 5666666652 3456788888888877665321 111 246778888888877 89999999999999986
Q ss_pred Ch-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH---HHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 147 TS-EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC---RDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 147 ~~-~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
.. +...... ..++|.++..|.++++.+|..|+|+|++++...+.. ...+ ..+++.++..+ .+. +.++..++
T Consensus 397 ~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l-~~~-~~v~~~a~ 471 (876)
T 1qgr_A 397 PEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGL-SAE-PRVASNVC 471 (876)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHT-TSC-HHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHH-cCC-HHHHHHHH
Confidence 54 3333322 347899999999999999999999999998654321 0111 12567777777 343 78899999
Q ss_pred HHhhhhcCCCC--------------CCChhhhHHHHHHHHHHhcCC---CHHHHHHHH----------------------
Q 009700 223 WTLSNFCRGKP--------------PAPFDQVRPALAALQHLIFSS---DEEVLTDAC---------------------- 263 (528)
Q Consensus 223 ~~L~~l~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~---------------------- 263 (528)
|+|.+++.... .........++|.|..++... +..++..++
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 99999886421 112234466777777776543 223433333
Q ss_pred ----------------------------------HHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCC--hhhHHHHHH
Q 009700 264 ----------------------------------WALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSS--TTVLVPALR 306 (528)
Q Consensus 264 ----------------------------------~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~ 306 (528)
+++..++..-. ........ .+++.++.++.+.. +.++..++.
T Consensus 552 ~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 552 LVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD-VVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH-HHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHH-HHHHHHHHHHHhccCCCCccHHHHH
Confidence 34444333322 12111111 25677777777764 478999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc--CChH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH--AEFE 384 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~ 384 (528)
+++.++..........++ .+++.+...|.+..++.+|..|+++++.++......+...+ ..+++.++..+.+ .+..
T Consensus 631 ~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRS 708 (876)
T ss_dssp HHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGG
T ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHH
Confidence 999998754332222222 36778888887643678999999999999863323333333 3578888898887 3678
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC----Ch-------HHHHHHHHHHHHHHHhhhhchh--cc-
Q 009700 385 VKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP----DP-------RIVTVCLEGLENILKIGEADKE--AG- 450 (528)
Q Consensus 385 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~-------~~~~~~l~~l~~i~~~~~~~~~--~~- 450 (528)
++..+++++++++.....+...++- .+++.+...+... |+ .++..++.++..++........ ..
T Consensus 709 ~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~ 786 (876)
T 1qgr_A 709 VKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPD 786 (876)
T ss_dssp GHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGG
T ss_pred hhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccch
Confidence 9999999999997633333323322 2566666666543 22 6777888888888875432100 00
Q ss_pred CCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 009700 451 STTANVYSEMIDECDGLDKIENLQSHD--NNEIYEKAVKLLERYWV 494 (528)
Q Consensus 451 ~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~a~~ii~~~~~ 494 (528)
.....+|...+ +..+..+..++ +..++..|...+..+..
T Consensus 787 ~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 787 VMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp GGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 00122333333 34444554555 78999888888776543
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.63 E-value=5.9e-14 Score=154.27 Aligned_cols=394 Identities=16% Similarity=0.158 Sum_probs=250.5
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchh-HHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPI-EEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
++.+.+.+.++ +..++..|+.++..++... .... .......+++.+..++.+++ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 45566667665 5789999999999887542 1111 11111236788888887776 899999999999999855554
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------HHHHHHhcCChHHHHHh
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----------------------CRDLVLSHGALMPLLAQ 208 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----------------------~~~~~~~~g~i~~Ll~l 208 (528)
....+...+++.++..+.+.++.++..+++++.+++..... .+..+ ...++.++..
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~ 329 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT 329 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence 44444446788888888888899999999999998743210 01011 1245666666
Q ss_pred hcc------chhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHH
Q 009700 209 LNE------HSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVI 281 (528)
Q Consensus 209 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~ 281 (528)
+.. +.+..++..+..+|..++...+ ......+++.+...+.+.++.++..++++++.++.... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 632 2346788899999988876543 13456788888888988999999999999999998754 3343333
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchh-HHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH-
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQT-QCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR- 359 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 359 (528)
. .+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..|.+ ++.++..++|++++++....
T Consensus 407 ~-~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 407 I-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp H-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhh
Confidence 3 488999999999999999999999999997644321 000112456777777765 47899999999999985311
Q ss_pred -------------HHHHHHHHcCcHHHHHHHHccC---ChHHHHHHHHHH------------------------------
Q 009700 360 -------------SQIQAVIEANIIAPLVYLLQHA---EFEVKKEASWAI------------------------------ 393 (528)
Q Consensus 360 -------------~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL------------------------------ 393 (528)
......+ ..++|.|+..+... +..++..+..++
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence 0011111 13555565555443 234444444444
Q ss_pred --------------------------HHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCC--hHHHHHHHHHHHHHHHhhh
Q 009700 394 --------------------------SNATSGGT-REQIQFLVSQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 394 --------------------------~nl~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~~l~~l~~i~~~~~ 444 (528)
..++.... .....++ ..+++.+..+++... +.++..++.++..++...+
T Consensus 563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 44433322 2221221 125667777777654 4688889999999887543
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLERY 492 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~~ 492 (528)
.. ..+|... .++.+.....+ .+++++..|...+..+
T Consensus 641 ~~-------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 641 GE-------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp GG-------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hh-------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 22 1223322 23444444433 4777877766555443
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=3.6e-13 Score=136.55 Aligned_cols=389 Identities=12% Similarity=0.081 Sum_probs=267.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-LPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
+..++..+.++|...|.+|-..|.++.... ..++++.|.+++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456777777899999999999998754320 1235677788887652 489999999999999764311110
Q ss_pred H-----H------HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccch--hhHHH
Q 009700 153 V-----V------IEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHS--KLSML 218 (528)
Q Consensus 153 ~-----i------~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~--~~~~~ 218 (528)
. . ....+-..|+..|.++++.+ ..++.+++.++... +.. .-.+.++.|+..+ .++ +..++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence 0 0 01123356777788877778 88999999997432 210 0124677788888 555 78899
Q ss_pred HHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCChHHHH-HHHHhCcHHHHHHHhc
Q 009700 219 RNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLL 294 (528)
Q Consensus 219 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~ 294 (528)
..++.+|..++... +.........+++.+..++.+. +..++..+++++.++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999753 2222334467889999999887 789999999999987654322111 0111114666777788
Q ss_pred CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHH--------------
Q 009700 295 HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRS-------------- 360 (528)
Q Consensus 295 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-------------- 360 (528)
+.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++++..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999976654332222226777888888887 899999999999998752110
Q ss_pred -------HHHHHHHcCcHHHHHHHHccC-------ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCCh
Q 009700 361 -------QIQAVIEANIIAPLVYLLQHA-------EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDP 426 (528)
Q Consensus 361 -------~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 426 (528)
..+..+ ..++|.++..+... ++.+|..|+.+|..++......... .+++.+...+.+.++
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence 111111 23677777777532 4579999999999988754322222 357788888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 427 RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 427 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.++..++.+|..+........ +...+ ...+..|..+..++++.|+..|.+.+.+|...
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~---------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQ---------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTT---------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH---------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999886432110 11111 34567788888899999999999999998753
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=1.4e-14 Score=147.06 Aligned_cols=361 Identities=13% Similarity=0.106 Sum_probs=244.9
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCc----------hhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHH
Q 009700 74 IPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCP----------PIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALT 141 (528)
Q Consensus 74 l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~----------~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 141 (528)
+..+...+.+. ++.+|..|+..|++++.....+ ....-....+...|+..|.+++ +.+ ..++.+++
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~ 114 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence 45566666653 6789999999999997642000 0001112334566778888777 677 88999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccch-hhHH
Q 009700 142 NIASGTSEHTRVVIEHGAVPKFVQLLGSA--SDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHS-KLSM 217 (528)
Q Consensus 142 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~ 217 (528)
.++....... .-.+++|.|+..+.++ ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.+.. +..+
T Consensus 115 ~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~v 190 (462)
T 1ibr_B 115 GIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNV 190 (462)
T ss_dssp HHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHH
Confidence 9987321100 0136789999999888 8999999999999998643 22111111 125677777784332 7889
Q ss_pred HHHHHHHhhhhcCCCC-C-CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 218 LRNATWTLSNFCRGKP-P-APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 218 ~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+..+++++.++..... . ........+++.+...+.+.+++++..+++++..++...+......+..++++.++..+.+
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998764321 0 0111112357777778888899999999999999987654332222222577788888888
Q ss_pred CChhhHHHHHHHHhHhhcCCcc-----------------hhHHHhc---cCChHHHHHHhccc------CchhHHHHHHH
Q 009700 296 SSTTVLVPALRTVGNIVTGDDT-----------------QTQCVID---NQGLPRLYQLLTQN------YKKSIKKEACW 349 (528)
Q Consensus 296 ~~~~v~~~al~~L~~l~~~~~~-----------------~~~~~~~---~~~l~~L~~lL~~~------~~~~v~~~a~~ 349 (528)
.++.++..|+.+++.++..... ....++. ..+++.++..+... .+..+|..|+.
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 9999999999999988754200 0000111 23556666666432 14579999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHH
Q 009700 350 TISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIV 429 (528)
Q Consensus 350 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 429 (528)
+|..++...++ .++ ..++|.+...+.+.++.+|..|+.+|+.++.+..++...... ..+++.++.++.++++.++
T Consensus 351 ~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 351 CLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp HHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHH
Confidence 99999864332 122 246788888889999999999999999999865432211111 4578999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009700 430 TVCLEGLENILKIGEA 445 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~ 445 (528)
..++++|.++......
T Consensus 426 ~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 426 DTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999986543
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=1.5e-13 Score=144.08 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=189.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.+..+.+.++++++.++..|+++|.++... .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 567888889999999999999999988532 122 246888999999988 99999999999999986665432
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--------------chhhHHH
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--------------HSKLSML 218 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--------------~~~~~~~ 218 (528)
+.++.+..+|.+.++.++..|+++|+.++...+.....+. ..++.++..|.+ ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 5788888999999999999999999999987665322322 467777777632 2356677
Q ss_pred HHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc------CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH
Q 009700 219 RNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF------SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 292 (528)
Q Consensus 219 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 292 (528)
..++.+|..++...|. .....++.|..++. +.+..+...+++++..+... +... . .++..|..+
T Consensus 252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~----~-~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR----V-LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH----H-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH----H-HHHHHHHHH
Confidence 7788888888765421 11122333333332 22346667777777766432 2111 1 245566666
Q ss_pred hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH
Q 009700 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIA 372 (528)
Q Consensus 293 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 372 (528)
+.+.++.++..|+.+|+.++...+.... .....++..+.++ +..+|..|+.++..++.... +.. +++
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~ 388 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMK 388 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHH
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHH
Confidence 7766777777777777777765443221 1344566666666 66777777777777764321 111 234
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 373 PLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 373 ~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
.|...+.+.+.++|..++.+|+.++.
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555666666677666666666655
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.57 E-value=3.9e-13 Score=152.89 Aligned_cols=404 Identities=12% Similarity=0.125 Sum_probs=273.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
.++.+++.+.+.|++.|.+|+..|.+.+... ......-....+++.|++.|.+.+ +.+|..|+.+|..++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 4788999999999999999999999877543 111111112346888999998777 999999999999999754431
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhH------HHHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSC------RDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
.+ ..+++.|+..|.++++.+|..++.+|+.++...+.. ... .-..+++.|+..+.++++..++..++.+|.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135688888888888899999999999998443321 111 112367888888843577899999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC-hhhHHHHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS-TTVLVPAL 305 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al 305 (528)
.++...+..-......+++.+...+.+++..++..++.+++.++...++. ++ ..+++.++..|.... +.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99864332222345788899999999999999999999999998765432 12 246788888776543 46788899
Q ss_pred HHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHcc-----
Q 009700 306 RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQH----- 380 (528)
Q Consensus 306 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~----- 380 (528)
.+++.++...+...... -..+++.++..+.+. ++.+|..++++++.++...+..+...+. .++|.++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 99999987554322111 236888999999887 8999999999999998744332222221 245555444321
Q ss_pred --------------------------------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 381 --------------------------------AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 381 --------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
..+.+|..|+.++..++.........++ ..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHH
Confidence 1245799999999998874432222332 457888888898888999
Q ss_pred HHHHHHHHHHHHHhhhhchh-cc-------CCcc-hhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 429 VTVCLEGLENILKIGEADKE-AG-------STTA-NVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 429 ~~~~l~~l~~i~~~~~~~~~-~~-------~~~~-~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
+..++.++..++........ .. ..+. ..+...+ ...++.+.....++++.++..+...+..+..
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99999999888874321000 00 0000 0011111 1224555555677888888777777766554
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.50 E-value=8e-13 Score=150.33 Aligned_cols=398 Identities=12% Similarity=0.110 Sum_probs=260.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCch----hHHHHhcCcHHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPP----IEEVIRAGVVPRFVEFLDR-HDLPQLQFEAAWALTNIASGT 147 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~ 147 (528)
.++.++..+.++++.+|..|+.++..++....... ...-.-..++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 36777888888888899999999998887642220 0111224579999999984 55 899999999999998522
Q ss_pred hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 148 SEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 148 ~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+...... -..+++.++..|.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1111000 023567777888888899999999999999865542 11 123577788777544344667778888888
Q ss_pred hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC------------
Q 009700 228 FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------ 295 (528)
Q Consensus 228 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------ 295 (528)
++...+..-......++|.+...+.+.+++++..+++++..++...++.....+. .+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence 8765433222345789999999999889999999999998887654332222222 244444443321
Q ss_pred -------------------------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHH
Q 009700 296 -------------------------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWT 350 (528)
Q Consensus 296 -------------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 350 (528)
..+.++..|+.+++.++...+......+ ..+++.++..+.+. +..+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1356788999999999875543332333 35678888888777 88999999998
Q ss_pred HHHHhcC--C-----------------HHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 351 ISNITAG--S-----------------RSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 351 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
+..++.. . ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++ .
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence 8887641 1 11222222 33677777779999999999999999988775321111121 1
Q ss_pred CChHHHHhhcCCCCh--HHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 009700 412 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLL 489 (528)
Q Consensus 412 ~~l~~L~~ll~~~~~--~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii 489 (528)
.+++.+...|....+ .++..++..+..++...... .+...+. ..+..|.....+++..++..|...+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~l 543 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHVQ--ALVPPVVACVGDPFYKITSEALLVT 543 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHHH--HHHHHHHHHHcccchHHHHHHHHHH
Confidence 357788888887654 78888888888887632211 1222332 3356666666667777766665555
Q ss_pred HHhc
Q 009700 490 ERYW 493 (528)
Q Consensus 490 ~~~~ 493 (528)
..+.
T Consensus 544 ~~l~ 547 (1230)
T 1u6g_C 544 QQLV 547 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.46 E-value=2.5e-12 Score=115.64 Aligned_cols=187 Identities=21% Similarity=0.212 Sum_probs=157.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+.++.|+.+|.++++.+|..++++|+.+.. ...++.|+.++ .+++..++..++++|..+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 578999999999999999999999998743 13678899999 67889999999999999863
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
...++.|..++.++++.++..++++|+.+... +.++.|+.++.++++.++..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 25678999999999999999999999988642 367889999999999999999999998843
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.+|..|..+|.++.
T Consensus 142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 23577899999888 99999999999999942 2 35778888999999999999999999987
Q ss_pred CCC
Q 009700 398 SGG 400 (528)
Q Consensus 398 ~~~ 400 (528)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=9.5e-12 Score=110.89 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=157.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCCh
Q 009700 158 GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPF 237 (528)
Q Consensus 158 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 237 (528)
+..+.++.+|.++++.+|..|+++|+.+.. .+.++.|+.++ .++++.++..++++|..+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH------
Confidence 457889999999999999999999998753 13578899999 788899999999999988532
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 317 (528)
..++.|..++.++++.++..++++|+.+... ..++.|+.++.++++.++..|+++|+.+..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 4688999999999999999999999987642 367889999999999999999999998853
Q ss_pred hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 318 QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 318 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
...++.|..++.++ ++.+|..|+++|+.+. .+ ..++.|..++.++++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24677899999988 9999999999999993 22 25778888899999999999999999875
Q ss_pred C
Q 009700 398 S 398 (528)
Q Consensus 398 ~ 398 (528)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=3.1e-12 Score=114.98 Aligned_cols=187 Identities=21% Similarity=0.192 Sum_probs=157.6
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+.++.|+.+|.+++ +.++..|+++|+.+.. ..+++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999887 9999999999998764 2568999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
.+.++.|+.++ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+...
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 142 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE- 142 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-
Confidence 23578888888 78889999999999999863 24678999999999999999999999998532
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
..++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 143 ----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 143 ----------RAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 367889999999999999999999998853 23566888999888 99999999999999
Q ss_pred HhcC
Q 009700 354 ITAG 357 (528)
Q Consensus 354 l~~~ 357 (528)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9753
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=4.5e-12 Score=113.01 Aligned_cols=185 Identities=21% Similarity=0.201 Sum_probs=157.9
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
.+..+.++++|.+++ +.++..|+++|+.+.. .+.++.|+.+|.++++.+|..++++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 346889999999998 9999999999998764 2468999999999999999999999999842 1
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 3578888888 77899999999999999853 2468889999999999999999999999863
Q ss_pred hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHH
Q 009700 274 NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISN 353 (528)
Q Consensus 274 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 353 (528)
.+.++.|..++.++++.++..|+.+|+.+.. ...++.|..++.++ ++.+|..|.++|..
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2477889999999999999999999999832 12567888899888 99999999999998
Q ss_pred Hh
Q 009700 354 IT 355 (528)
Q Consensus 354 l~ 355 (528)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.41 E-value=5.4e-10 Score=116.66 Aligned_cols=332 Identities=14% Similarity=0.123 Sum_probs=232.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
....+++.+.+++...+..+.-.+..++.. ++..-.+ ++..+.+=|++++ +.++-.|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 467888899999999998888888877654 2221111 3667777788888 9999999999999965 55433
Q ss_pred HHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 153 VVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.+++.+.++| .+.++.+|..|+.++..+....|+. +...+.++.+..+| .+.++.++.+++.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3568899999 8899999999999999998766642 22246788888888 78889999999999999987
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCC-------------CHHHHHHHHHHHHhhccCC-hHHHHHHHHhCcHHHHHHHhc--
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSS-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLL-- 294 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-- 294 (528)
..+..-.......+..|.+++..+ ++-.+...+..+..++... ++....+.+ ++..++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 653211112233444444554322 6788999999999988643 333333332 4444444332
Q ss_pred -------CCCh--hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 295 -------HSST--TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 295 -------~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
+.+. .+...|++++..+.. .+.... .++..|..+|.++ ++.+|..|+..|..++...+. . .+
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence 2223 778888888888753 222121 3466788888877 999999999999999875432 1 12
Q ss_pred HHcCcHHHHHHHHc-cCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 366 IEANIIAPLVYLLQ-HAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 366 ~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
+ ....+.++.++. +.|..+|..|+..|..++. ...+.. ++..|..++...|.+++..++.++..+...
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2 246778888898 8999999999999999986 333443 344566666667777777777777666654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.31 E-value=6.7e-09 Score=108.41 Aligned_cols=334 Identities=13% Similarity=0.070 Sum_probs=228.3
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 74 IPSMVQGVLS---ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 74 l~~l~~~l~s---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
+..+-+.+++ .++..+..++..+..+...+ .+. ..+.+..++++.+++ ...+..+.-++..++..+++.
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence 3445555553 35666666666655444432 222 235777788999888 899999999999999877665
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-cchhhHHHHHHHHHhhhhc
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-EHSKLSMLRNATWTLSNFC 229 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~~~~a~~~L~~l~ 229 (528)
... ++..+.+=|.++++.++..|+.+|+++.. ++..+ ..++.+.+++. .+.++.+++.|+.++..+.
T Consensus 109 ~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 109 IRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 433 35778888889999999999999999953 33222 25677777773 4678999999999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-------------
Q 009700 230 RGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS------------- 296 (528)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------------- 296 (528)
...|.... ..+.++.+..+|.+.|+.++..|+.++..++...+......+. .++..|..++...
T Consensus 177 ~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 177 RTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp HHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred HhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCC
Confidence 86542211 1367889999999999999999999999998766543221111 1333343444321
Q ss_pred ChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHh---------cccC-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009700 297 STTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLL---------TQNY-KKSIKKEACWTISNITAGSRSQIQAV 365 (528)
Q Consensus 297 ~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL---------~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l 365 (528)
++-.+...++.++.++...+ .....+.+ ++..++..+ ++.. ...|..+|+.++..+. .+++...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH--
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH--
Confidence 46688889999998886432 33332322 333333322 1220 2378889999999885 3444332
Q ss_pred HHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHh
Q 009700 366 IEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 366 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~ 442 (528)
.++..|..++.+.++++|..|+.+|..++...+. ...+ ......++.++. ++|..++..+++.+..+...
T Consensus 329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 2566788889889999999999999999875421 1122 235777888888 89999999999998887754
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.18 E-value=7e-10 Score=117.34 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=158.3
Q ss_pred hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009700 113 RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGD-SP 190 (528)
Q Consensus 113 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~~ 190 (528)
+..++|. ++.|++++ ++.|..|+++|++++. ++..+..+...|++..++ .+|.+++.++|..|+++|.||+.+ .+
T Consensus 33 ~~~i~Pl-l~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPV-LKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHH-HHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHH-HHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 3455664 56789888 8999999999999997 788888899888887765 578889999999999999999954 57
Q ss_pred hHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 191 SCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 191 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
..+..+...|++++|+.++. . ....+..+......... .....+ .++...++++|.+|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~-~--------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~ 168 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAK-A--------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA 168 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHH-H--------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHH-h--------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence 78889999999999999983 2 12222222211110000 011111 123455667788888
Q ss_pred cCChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh--cccCchhHHH
Q 009700 271 DGTNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL--TQNYKKSIKK 345 (528)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~ 345 (528)
..+++....+...+.++.|+..|.+ ....++..|+.+|..++..++...+.+.+.+....+..++ ... +...+.
T Consensus 169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~ 247 (684)
T 4gmo_A 169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV 247 (684)
T ss_dssp HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence 8888777888888899999998854 2457999999999999999988888787766543333222 233 445688
Q ss_pred HHHHHHHHHh
Q 009700 346 EACWTISNIT 355 (528)
Q Consensus 346 ~a~~~L~nl~ 355 (528)
.+|+++.|+.
T Consensus 248 la~giL~Ni~ 257 (684)
T 4gmo_A 248 MACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 8999999974
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.10 E-value=1.5e-08 Score=83.64 Aligned_cols=216 Identities=15% Similarity=0.178 Sum_probs=175.8
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCC
Q 009700 157 HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAP 236 (528)
Q Consensus 157 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 236 (528)
..++..++.+|.++-..++.+|+..+.+++...|+..+. .+..|+.++.++....+......++..++...|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 346788999999988999999999999999998876555 456677787778888888888899999987654
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 237 FDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
..+.+.+|.+..-..-.|+.++.....+|..++..++.... +++.-+..++.+++..-+..|+..++.+.....
T Consensus 103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 55678899998888888999999999999999988875543 366778999999888788888888888876554
Q ss_pred chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 317 TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 317 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
... ..++|.|..+|.+. +.-||..|..+|.+++..++..+..+ ..-+.-+.+.+..+++.+..+|+.+
T Consensus 177 ~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 177 KYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 433 24789999999998 99999999999999999888854322 2344556777888999888888887
Q ss_pred cC
Q 009700 397 TS 398 (528)
Q Consensus 397 ~~ 398 (528)
+.
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 67
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.06 E-value=1.7e-08 Score=96.11 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=164.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
....+++.+.++|...+...--.+..+.... ++.+ =++..|.+=+++++ +-++-.|+++|++|.. ++...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 3567788999999999998888887766541 2222 14777888888888 9999999999999987 33333
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
. +.+.+.+.|.+.++-+|..|+.+...+....|+.. .+++..+-.++ .+.++.++.+|+.+|..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 35778889999999999999999999998888632 25788888888 7788889999999999998753
Q ss_pred CCCChhhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhccCC-hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 009700 233 PPAPFDQVRPALAALQHLIFSS---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTV 308 (528)
Q Consensus 233 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L 308 (528)
...+..|+..+... ++-.+...++.+..++..+ +. ....+++.+..+|++.++.|...|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 12334444444332 4555566666666665543 21 1234778888889999999999999999
Q ss_pred hHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHH
Q 009700 309 GNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKE 388 (528)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 388 (528)
..+....... . ..++..+..+|.++ ++.+|..|+..|..+....|..++. .-..+.+++.+++..+...
T Consensus 275 ~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 9886532221 1 23456777888888 9999999999999998877765542 3445677788888888776
Q ss_pred HHHHHH
Q 009700 389 ASWAIS 394 (528)
Q Consensus 389 a~~aL~ 394 (528)
|..+|.
T Consensus 344 Aittll 349 (355)
T 3tjz_B 344 AITTLL 349 (355)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666554
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.05 E-value=2.5e-08 Score=105.36 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=189.5
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC-------ChHHHHHHHHHHHHH
Q 009700 74 IPSMVQGVL---SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD-------LPQLQFEAAWALTNI 143 (528)
Q Consensus 74 l~~l~~~l~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~~L~~l 143 (528)
+..|-..|. ++++.++.-|+..|.-+-.+.. .. ++..|...|.+++ .+.++..|+..|+-+
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 445555555 5667788888888876655431 11 3667777776543 267888999999998
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHH
Q 009700 144 ASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATW 223 (528)
Q Consensus 144 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~ 223 (528)
..|+... .+++.|..+|.+++..+++.|+.+|+-+-.+... .+ ++..|+..+..+.+..+++.++.
T Consensus 465 ~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHHH
Confidence 7655321 1457778888877778888999999987433221 11 35666666655667889999999
Q ss_pred HhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhH
Q 009700 224 TLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVL 301 (528)
Q Consensus 224 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~ 301 (528)
+|..+..+.+ ..++.++..|. +.++.++..++.+++.-..+.... ..++.|++.+ .+.+..++
T Consensus 531 gLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VR 595 (963)
T 4ady_A 531 GLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVR 595 (963)
T ss_dssp HHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHH
T ss_pred HHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHH
Confidence 9998876643 23455555554 567888888887776443332211 1345444444 45677899
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA 381 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~ 381 (528)
..|+.+||.+..+.++ .++.++.+|.+..++.+|..|+++++.++++++.. .++..|..+..+.
T Consensus 596 raAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~ 659 (963)
T 4ady_A 596 RAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP 659 (963)
T ss_dssp HHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS
T ss_pred HHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC
Confidence 9999999998877653 24455665544449999999999999999876531 2566788888999
Q ss_pred ChHHHHHHHHHHHHhcCCCC
Q 009700 382 EFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 382 ~~~v~~~a~~aL~nl~~~~~ 401 (528)
+..|+..|+.+|+.+..+.+
T Consensus 660 d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 660 VDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp SHHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999987654
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.96 E-value=3.6e-08 Score=85.25 Aligned_cols=226 Identities=18% Similarity=0.148 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
...+..|..+|...|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|++|++.+..+.+-.-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788899999999999999999999999876544444443345899999999999999999999999999987664332
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
.+. .+...+..++.++ ++-++.+|+-.++-+--.+.. .+++..+..++.+.++.++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 2456788889877 999999999999988332211 135677888889999999999999999998743
Q ss_pred -CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCC
Q 009700 401 -TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDN 478 (528)
Q Consensus 401 -~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~ 478 (528)
+++. -.+++.-+-.+|++.|+.+++.++.++..++...-. .|..-.. .+....+..|. -...
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~~~~~~---~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------ENVKIEL---LKISRIVDGLVYREGA 245 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SCCHHHH---HHHHHHHHHGGGCSSC
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------HhHHHHH---HHHHHHHHHHHHhcCC
Confidence 2222 134677788899999999999999999999976322 1111111 23456667777 6788
Q ss_pred HHHHHHHHHHHHHh
Q 009700 479 NEIYEKAVKLLERY 492 (528)
Q Consensus 479 ~~v~~~a~~ii~~~ 492 (528)
|.++.+|..+.+..
T Consensus 246 ~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 246 PIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998887654
No 70
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.95 E-value=6.8e-09 Score=109.79 Aligned_cols=212 Identities=16% Similarity=0.105 Sum_probs=150.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC-CCC-Ch
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK-PPA-PF 237 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~-~~ 237 (528)
+.++++.|++++++.|..|+++|+||+. ++..+..+...+++.+++..+..+++.+++..++++|.||+... +.. ..
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 4446677999999999999999999996 56688899999999887765448889999999999999999764 211 22
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC---hHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
....++++.|..++... ...+....... ....+.+ + +.+...++.+|++++.+
T Consensus 115 l~~~~il~~L~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~-----~-----------~~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAV--------LETLTTSEPPFSKLLKAQQRL-----V-----------WDITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHTTHHHHHHHHHHHH--------HHHHHCBTTBGGGSCHHHHHH-----H-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhh--------HHHHhhhccccccccHHHHHH-----H-----------HHHHHHHHHHHHHHHhC
Confidence 23367888888777532 11222221110 1111110 0 12445677788889888
Q ss_pred CcchhHHHhccCChHHHHHHhcccC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH---HHHHHHccCChHHHHHH
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQNY--KKSIKKEACWTISNITAGSRSQIQAVIEANIIA---PLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~---~L~~ll~~~~~~v~~~a 389 (528)
++.....+...+.++.|+..|.+.. ...++..|+.+|.+++.+++..++.+.+.+... .+.. +...+...+..+
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~~~~~la 249 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTDPRAVMA 249 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSCTTHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCcHHHHHH
Confidence 8877777888899999999985441 457999999999999999999999888766433 3333 334444567788
Q ss_pred HHHHHHhc
Q 009700 390 SWAISNAT 397 (528)
Q Consensus 390 ~~aL~nl~ 397 (528)
++.|.|+.
T Consensus 250 ~giL~Ni~ 257 (684)
T 4gmo_A 250 CGVLHNVF 257 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 99999874
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.93 E-value=3.6e-07 Score=75.58 Aligned_cols=218 Identities=13% Similarity=0.155 Sum_probs=170.1
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDK 276 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~ 276 (528)
+..++..++.+| +++-..++.+++..+++++...| ......+..|+.+++ +.-.........+++.++...++.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445678888888 77778899999999999997654 345667777777765 445667778889999999887766
Q ss_pred HHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 277 IQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 277 ~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
+.. ++|.+..-..-.++.++....++|+.++..++.... +++.-+..++.++ +..-|-.|+.+|+.+..
T Consensus 105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 553 678888888889999999999999999998887554 3456788999987 87778888888888865
Q ss_pred CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 357 GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 357 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
.....+ ...+|.|+.+|.+.+.-||..|..+|.+++... +..++. +...+.-++..+..+...+-++|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 555443 347899999999999999999999999999964 554443 33344557777788888888899
Q ss_pred HHHHHhh
Q 009700 437 ENILKIG 443 (528)
Q Consensus 437 ~~i~~~~ 443 (528)
..+.-..
T Consensus 242 ~rl~l~e 248 (253)
T 2db0_A 242 SRLLLLE 248 (253)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 8887543
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.86 E-value=1.3e-06 Score=84.99 Aligned_cols=321 Identities=12% Similarity=0.121 Sum_probs=197.0
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hHHHHHHhcCCh-HHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 158 GAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSP---SCRDLVLSHGAL-MPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 158 g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---~~~~~~~~~g~i-~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
.++..++.+|.. ...++.+..+..+..+..+.| .....+.+.... ..+.......++.-.+..++.++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 467888888876 778999999999999987776 333333333222 223332224445555566666666665443
Q ss_pred CCCChhhhHHHHH--HHHHHhcCC-CHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC----C-------
Q 009700 233 PPAPFDQVRPALA--ALQHLIFSS-DEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH----S------- 296 (528)
Q Consensus 233 ~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~----~------- 296 (528)
+. .......++. -+...|... +...+.-++.++..|...+. ....+.+. ..++.++.++.. .
T Consensus 157 ~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred Cc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 22 2333344444 444555542 34445567777777776543 44444433 245666544331 1
Q ss_pred ------ChhhHHHHHHHHhHhhcCCcchhHHHhccCCh--HHHHHHhcccCchhHHHHHHHHHHHHhcCCH----HHHHH
Q 009700 297 ------STTVLVPALRTVGNIVTGDDTQTQCVIDNQGL--PRLYQLLTQNYKKSIKKEACWTISNITAGSR----SQIQA 364 (528)
Q Consensus 297 ------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~ 364 (528)
...++..++.|++-++-..+ ....+...++. ..|+.+++.....++-+-++.++.|+....+ ..+..
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 24567889999998886544 44445555533 5666777766578999999999999987542 22332
Q ss_pred -HHHcCcHHHHHHHHccC---ChHHHHHHHHHHHH---------------------hcCCCCH--------HHHHHHHHC
Q 009700 365 -VIEANIIAPLVYLLQHA---EFEVKKEASWAISN---------------------ATSGGTR--------EQIQFLVSQ 411 (528)
Q Consensus 365 -l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~n---------------------l~~~~~~--------~~~~~l~~~ 411 (528)
++..++ +.++..|... |+++....-..... ...+.+. +....+.++
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 333445 4455556543 56665433222111 1122111 111122211
Q ss_pred --CChHHHHhhcCC----------CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCH
Q 009700 412 --GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNN 479 (528)
Q Consensus 412 --~~l~~L~~ll~~----------~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~ 479 (528)
.+++.|+.+|++ .|+.++.+||.=|..+++..+.+ ...+++.||.+.+..|+.|+|+
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-----------r~i~~~lg~K~~VM~Lm~h~d~ 461 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----------IDVLDKTGGKADIMELLNHSDS 461 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHSHHHHHHHHTSCSSH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-----------hHHHHHcCcHHHHHHHhcCCCH
Confidence 357889999973 47888999999999999988764 4567899999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 009700 480 EIYEKAVKLLERYW 493 (528)
Q Consensus 480 ~v~~~a~~ii~~~~ 493 (528)
+|+..|...+.++.
T Consensus 462 ~Vr~~AL~avQklm 475 (480)
T 1ho8_A 462 RVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.85 E-value=3.3e-08 Score=90.52 Aligned_cols=186 Identities=15% Similarity=0.210 Sum_probs=144.5
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 009700 203 MPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTDACWALSYLSDGTNDKIQAVI 281 (528)
Q Consensus 203 ~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 281 (528)
+.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3467777 788899999999999999876332222234678899999995 88999999999999999865333333333
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcC-CHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAG-SRS 360 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 360 (528)
. .+++.++..+.+.+..++..|..++..++....- . .+++.+...|.+. ++.+|..++..|+.+... .+.
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3 3899999999999999999999999999875431 1 3567888999988 999999999999997653 333
Q ss_pred H-HHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 009700 361 Q-IQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 361 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~ 399 (528)
. ....+. .++|.|..++.+.++++|..|..+++.++..
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 122223 5899999999999999999999999998764
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.81 E-value=1.6e-06 Score=91.88 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=187.7
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 74 IPSMVQGVLSEN--------SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 74 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+..|...+.+++ +.++..|+..|.....+..++ .+++.|...|.+++ ..++..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455566665444 556777777777554443222 24677888888776 6777788899998755
Q ss_pred CChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHH
Q 009700 146 GTSEHTRVVIEHGAVPKFVQLL-GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWT 224 (528)
Q Consensus 146 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~ 224 (528)
|+.... ++..|+..+ ...+..++..++.+|+.+....+. .++.++..|..+.++.++..++.+
T Consensus 502 GTgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 433211 234455443 456789999999999999766654 477888888667788888888888
Q ss_pred hhhhcCCCCCCChhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHh-cCCChhhHH
Q 009700 225 LSNFCRGKPPAPFDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHSSTTVLV 302 (528)
Q Consensus 225 L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~ 302 (528)
++.-+.+... ...++.|++.+ .+.++.++..|..+|+.+.-+.+ ..++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence 8765555322 24455444443 45678899999999998876654 2456666644 568899999
Q ss_pred HHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH----HHHHHHcCcHHHHHHHH
Q 009700 303 PALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ----IQAVIEANIIAPLVYLL 378 (528)
Q Consensus 303 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~ll 378 (528)
.|..+||.++.+++... +++.|..++++. +..||..|+.+|+.+..++.+. +.. +...|...+
T Consensus 631 gAalALGli~aGn~~~~-------aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQS-------AIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCHH-------HHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHH-------HHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 99999999998877522 355788888888 9999999999999998864443 222 334455666
Q ss_pred cc--CChHHHHHHHHHHHHhcC
Q 009700 379 QH--AEFEVKKEASWAISNATS 398 (528)
Q Consensus 379 ~~--~~~~v~~~a~~aL~nl~~ 398 (528)
.+ .++..+--|..|.+-+-.
T Consensus 698 ~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTT
T ss_pred hcccccHHHHHHHHHHHHHHhc
Confidence 54 467788888888776644
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.79 E-value=1.5e-07 Score=89.58 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 009700 85 NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV 164 (528)
Q Consensus 85 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 164 (528)
++.-...++..+-.+...+..-+..++ ..+.+..++++.+++ ..++.-....+.+++...++. ++ ++..|.
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~ 110 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---II---VTSSLT 110 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---GG---GHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---HH---HHHHHH
Confidence 444444445444444443312222222 235677788999988 899998888888888753332 22 568888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHH
Q 009700 165 QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPAL 244 (528)
Q Consensus 165 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 244 (528)
+=+.++++-+|-.|+++|++|.... .-+. ..+++-+.| .+.++.++..|+.+...|....| ..+.+.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~ 178 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWV 178 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHH
Confidence 8899999999999999999996443 1111 345666777 88899999999999999986644 2445778
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC---ChhhHHHHHHHHhHhhcCC-cchhH
Q 009700 245 AALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS---STTVLVPALRTVGNIVTGD-DTQTQ 320 (528)
Q Consensus 245 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~~l~~~~-~~~~~ 320 (528)
+.+..++.+.++.++..|+.++..+...+.. .+..++..+... ++-.+...+++++.++..+ +...
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~- 248 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD- 248 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-
Confidence 8888999999999999999999999876532 233444444432 4555566777777776654 2222
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG 400 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~ 400 (528)
..+++.+.++|++. ++.|..+|+++|..+...... .. ..++..|..++.++++.+|-.|+..|..++...
T Consensus 249 ----~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 249 ----SPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred ----HHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 34667888888888 999999999999998542221 11 235667777888999999999999998887743
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 401 TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 401 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
|..... +-.-+.+++.++|..+...|+ ..+++-|
T Consensus 319 -P~~v~~-----~n~~ie~li~d~n~sI~t~Ai---ttllktg 352 (355)
T 3tjz_B 319 -PSAVTA-----CNLDLENLVTDANRSIATLAI---TTLLKTG 352 (355)
T ss_dssp -------------------------------------------
T ss_pred -cHHHHH-----HHHHHHHHccCCcHhHHHHHH---HHhhhcc
Confidence 333222 344566778888877655444 4445433
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.71 E-value=2.3e-07 Score=84.80 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=139.3
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 286 CPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT-QNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
-+.+...+.+.+|..|..|+..|..++.+.+......+ ..+++.|...+. +. +..++..|+.+++.++.+-......
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34577888999999999999999999876332111111 245777888885 77 9999999999999998632222222
Q ss_pred HHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 365 VIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 365 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+ ..++|.++..+.+.+..+|..|..+|..++...+.+ .+++.+...+++.++.++..++..|..++....
T Consensus 95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~--------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE--------AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 22 238999999999999999999999999998865422 257788889999999999999999999876542
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.... +...+. ..++.|..+.++++++|+..|...+..+..
T Consensus 166 ~~~~--------~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTAL--------NKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGC--------CHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCc--------cHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1100 112221 236788888899999999999888877653
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.66 E-value=6.5e-07 Score=77.49 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=146.1
Q ss_pred CcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHH
Q 009700 284 GVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQ 363 (528)
Q Consensus 284 ~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 363 (528)
+.+..+.++|...++.++..++.+|..+....+.......=..+++.++.++.+. +.++.-.|..++..+..+.|-.-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 4677899999999999999999999999987654443343346889999999988 999999999999999875332222
Q ss_pred HHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 364 AVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.+.. +...|.+++.+++.-++.+|+..++.+-..... .+++..+..++.+.|+++...++.++.++....
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 2222 566788999999999999999999998332211 124667888899999999999999999999876
Q ss_pred hhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 444 EADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
++... + .+.++-+-.+..++|+.+.++|..+++..++.
T Consensus 182 ~D~~i--------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 ADSGH--------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SSCCC--------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHH--------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 54321 1 22345567888999999999999999998874
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.66 E-value=5.2e-07 Score=82.50 Aligned_cols=191 Identities=9% Similarity=0.088 Sum_probs=141.6
Q ss_pred HHHhhccchhhHHHHHHHHHhhh-hcCCCCCCC--hhhhHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCh-HHHH-
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSN-FCRGKPPAP--FDQVRPALAALQHLI-FSSDEEVLTDACWALSYLSDGTN-DKIQ- 278 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~- 278 (528)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ ...+..++..++.+++.++.+-. ..+.
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44556 67788899999999999 876543322 223457788899999 68899999999999999986422 1222
Q ss_pred HHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC
Q 009700 279 AVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS 358 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 358 (528)
.... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2232 2789999999999999999999998888875432110000113567888999998 9999999999999998633
Q ss_pred H---HHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 359 R---SQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 359 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+ ......+...++|.|..++.+.++.+|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 334344424699999999999999999999999988764
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.58 E-value=3.7e-05 Score=84.96 Aligned_cols=342 Identities=11% Similarity=0.060 Sum_probs=197.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC------hh
Q 009700 76 SMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT------SE 149 (528)
Q Consensus 76 ~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~------~~ 149 (528)
.++..+.+.+..++...+.++..++...-...+ .+++|.|++++++++ +..+..++.+|..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 455555556688888888899988876422233 456999999998877 788899999999998722 12
Q ss_pred hHHH---HHhcCChHHHHHh-------hCCCCH---------HHHHHHHHHHHHhhC-CChhH-HHHHHhcCChHHHHHh
Q 009700 150 HTRV---VIEHGAVPKFVQL-------LGSASD---------DVREQAVWALGNVAG-DSPSC-RDLVLSHGALMPLLAQ 208 (528)
Q Consensus 150 ~~~~---i~~~g~i~~L~~l-------L~~~~~---------~i~~~a~~~L~nl~~-~~~~~-~~~~~~~g~i~~Ll~l 208 (528)
.+.. ++. ...+.++.+ +..+.. ++...++.+++++.. +.+.. .+.+. ..++.+...
T Consensus 163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~ 239 (960)
T 1wa5_C 163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHH
Confidence 2221 111 123433332 443211 233446666666642 33321 11111 123334444
Q ss_pred hccc-----h---------hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhh
Q 009700 209 LNEH-----S---------KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-----SSDEEVLTDACWALSYL 269 (528)
Q Consensus 209 l~~~-----~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l 269 (528)
+... . ...++..++.+|..+....+..-......+++.+...+. ..++.+...++..+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 4210 0 124677778888877654322111233455555566554 34578888888888887
Q ss_pred ccCChHHHH-----HHHHhCcH-HHHHHHhc-----------------------CCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 270 SDGTNDKIQ-----AVIEAGVC-PRLVELLL-----------------------HSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 270 ~~~~~~~~~-----~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
+.... ... .++. .++ ..++..+. ......+..|..+|..++...+..
T Consensus 320 ~~~~~-~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 320 TRIPK-YFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HTSHH-HHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred hCcHh-HHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 75422 111 1111 122 22233331 111256777888888888655421
Q ss_pred HHhccCChHHHHHHhc------ccCchhHHHHHHHHHHHHhcCC---H---H------HHHHHHHcCcHHHHHHHHccC-
Q 009700 321 CVIDNQGLPRLYQLLT------QNYKKSIKKEACWTISNITAGS---R---S------QIQAVIEANIIAPLVYLLQHA- 381 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~i~~L~~ll~~~- 381 (528)
++. .+++.+.+.+. +. +...|..|+.+++.++.+. . . ....++..-++| .+.++
T Consensus 396 -v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~ 468 (960)
T 1wa5_C 396 -VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNN 468 (960)
T ss_dssp -HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSS
T ss_pred -HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCC
Confidence 111 23445555555 34 6788999999999997531 1 0 222222212333 34555
Q ss_pred --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 382 --EFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 382 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
++.+|..|+|+++.++..-.++.... +++.++..|.++++.++..++.+|.+++..
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999999988655544333 577888888888899999999999999874
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4e-07 Score=83.25 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=140.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhHHHHHHh-cCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCC-CCCh-
Q 009700 162 KFVQLLGSASDDVREQAVWALGN-VAGDSPSCRDLVLS-HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKP-PAPF- 237 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~- 237 (528)
.+...+.+.++.-|..++..|.. ++.+++.......+ ..++..|...+.++.+..++..++.+|..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87544332100000 12355566666567788899999999999996543 2222
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHH-HHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDD 316 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 316 (528)
.....++|.++..+.+....|+..+..++..++...+...... .+ .+++.|...|++.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4567789999999998889999998888888776431100000 11 267889999999999999999999999997655
Q ss_pred c---hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 317 T---QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 317 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
. .....+...+++.+.+++.++ ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3 222233247899999999998 99999999999999874
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.54 E-value=1.2e-08 Score=83.53 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhH
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQ 320 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 320 (528)
...++.+..+|.++++.++..++++|+.+... .++.|+.+|.++++.++..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45677888999999999999999999876532 25788899999999999999999998863
Q ss_pred HHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHh
Q 009700 321 CVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNA 396 (528)
Q Consensus 321 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl 396 (528)
...++.|..+|.++ ++.||..|+|+|+++.. + ..++.|+.++.+.++.++..|+++|..+
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12467889999888 99999999999999852 2 2578889999999999999999998753
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.51 E-value=1.8e-05 Score=87.64 Aligned_cols=335 Identities=10% Similarity=-0.026 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhc---------------CCCChHHHHHHHHHHHHHhcCCh--h
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLD---------------RHDLPQLQFEAAWALTNIASGTS--E 149 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~---------------~~~~~~v~~~a~~~L~~l~~~~~--~ 149 (528)
.++..++.++...+.....+. . ....+++.+.. |. +.++++++..|+.++..+....+ +
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~-~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTI-E--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCG-G--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCCcCc-c--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 567777777776665210111 1 33456776666 41 11237899999999999998422 1
Q ss_pred hHHHHHhcCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCChhH-H-----------HHHHhcCChHHHHH
Q 009700 150 HTRVVIEHGAVPKFVQL-------LGSAS---DDVREQAVWALGNVAGDSPSC-R-----------DLVLSHGALMPLLA 207 (528)
Q Consensus 150 ~~~~i~~~g~i~~L~~l-------L~~~~---~~i~~~a~~~L~nl~~~~~~~-~-----------~~~~~~g~i~~Ll~ 207 (528)
....+. .++|.++.+ +...+ .+.....+..+..++...+.. . ..+. ..++.++.
T Consensus 280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~ 355 (971)
T 2x1g_F 280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILH 355 (971)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHH
T ss_pred cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHH
Confidence 111111 123333332 23334 266666677777666433221 1 1111 13344444
Q ss_pred hhcc----chhhHHHHHHHHHhhhhcCCC--------CCCCh----hhhHHHHHHHHHHhcCCCH---------------
Q 009700 208 QLNE----HSKLSMLRNATWTLSNFCRGK--------PPAPF----DQVRPALAALQHLIFSSDE--------------- 256 (528)
Q Consensus 208 ll~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~--------------- 256 (528)
+... ..+..+...+++.+..++... ..... .....+++.++..+..++.
T Consensus 356 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~ 435 (971)
T 2x1g_F 356 CTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFR 435 (971)
T ss_dssp HHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHH
T ss_pred HHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHH
Confidence 4322 246778889999888876511 11111 1224455555555532211
Q ss_pred HHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcC-----CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHH
Q 009700 257 EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLH-----SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPR 330 (528)
Q Consensus 257 ~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 330 (528)
..+..+..++..++..-+ ..... +++.+...+.+ .++..++.++.+++.++.+........+. .+++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~ 509 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRV 509 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHH
Confidence 244555556666554433 22222 33334444433 67889999999999999876542211111 12332
Q ss_pred HHHHhc-ccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009700 331 LYQLLT-QNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV 409 (528)
Q Consensus 331 L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 409 (528)
+..+.. +. ++.+|..++|+++.++.......+.+ ..+++.|+..+ + +.++..|++++.+++..+......++-
T Consensus 510 l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~ 583 (971)
T 2x1g_F 510 LAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD 583 (971)
T ss_dssp HHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 222221 34 78999999999999975111111111 13567777777 3 789999999999999765444334432
Q ss_pred HCCChHHHHhhcCC--CChHHHHHHHHHHHHHHHhh
Q 009700 410 SQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 410 ~~~~l~~L~~ll~~--~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++..+..++.. -+.+.+..+++++..++...
T Consensus 584 --~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 584 --PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp --HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 367777777776 35678888999999998753
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=2.5e-08 Score=81.66 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=93.8
Q ss_pred cCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH
Q 009700 114 AGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR 193 (528)
Q Consensus 114 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~ 193 (528)
...++.|+.+|++++ +.++..|+++|+.+.. ..++.|+.+|.++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 445788999999887 8999999999987643 136889999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYL 269 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l 269 (528)
..++.|+..+ .++++.++..++|+|..+.. ...++.|..++.++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1478888888 77889999999999999862 36789999999999999999999998764
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.49 E-value=1.5e-05 Score=88.04 Aligned_cols=297 Identities=10% Similarity=0.083 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-----
Q 009700 131 QLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLG------SASDDVREQAVWALGNVAGDSPSCRDLVLSH----- 199 (528)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~----- 199 (528)
..+..|..+|..++...+ +.+.. .+++.+...+. +.+...++.|+.+++.++......... ...
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence 466777778887777332 12211 13344444454 467889999999999998532100000 000
Q ss_pred CCh----HHHHHhhccch---hhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 200 GAL----MPLLAQLNEHS---KLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 200 g~i----~~Ll~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
... ..++..+ .++ ++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++..
T Consensus 451 ~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 111 1233344 333 7889999999999999763 2345678899999999888899999999999998864
Q ss_pred C-----------hHHHHHHHHhCcHHHHHHHhcCCC-----hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh-
Q 009700 273 T-----------NDKIQAVIEAGVCPRLVELLLHSS-----TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL- 335 (528)
Q Consensus 273 ~-----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL- 335 (528)
. .+.....+. .+++.|+.++.... ......++.+++.++....+....... .+++.|...+
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~ 604 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVT 604 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence 1 112222222 36667777777641 113345667777665432221111111 2334444444
Q ss_pred ---cccCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC
Q 009700 336 ---TQNYKKSIKKEACWTISNITAG-SRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ 411 (528)
Q Consensus 336 ---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 411 (528)
+++.++..+..++.+|+.++.. .++....+ ...++|.+..++.....+....+..++..+.... .....++.
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~-- 680 (960)
T 1wa5_C 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIK-- 680 (960)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTG--
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHH--
Confidence 3333567777788889888864 44444333 3457899999888776667777777776665432 01111111
Q ss_pred CChHHHH--hhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 412 GCIKPLC--DLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 412 ~~l~~L~--~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
.+++.+. ..+... ..+..++.+|..++..+.
T Consensus 681 ~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~ 713 (960)
T 1wa5_C 681 PLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDS 713 (960)
T ss_dssp GGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhCh
Confidence 1344444 444433 244456666777665543
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.46 E-value=6.6e-05 Score=82.44 Aligned_cols=340 Identities=12% Similarity=0.114 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFV-EFLDRHDLPQLQFEAAWALTNIASGT---S--EHTRVVIE 156 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~ 156 (528)
+.++++...++.++...++- -+...+++.++++.+. .+|. + ++++..|+.||..+.+.. + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35566777788888877753 4567788899999999 8885 3 789999999999998722 2 12211111
Q ss_pred --cCChHHH-----------HHhh---CCCCHHHHHHHHHHHHHhhCC-------ChhHHHHHHhcCChHHHHHhhccch
Q 009700 157 --HGAVPKF-----------VQLL---GSASDDVREQAVWALGNVAGD-------SPSCRDLVLSHGALMPLLAQLNEHS 213 (528)
Q Consensus 157 --~g~i~~L-----------~~lL---~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~Ll~ll~~~~ 213 (528)
.+.++.+ ...+ ...+.+..+..+.++..+... .+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 1111 123456666666666554321 122222221 1223444433 445
Q ss_pred hhHHHHHHHHHhhhhcCCC--CCCChhhh----HHHHHHHHHHhcCCC--------------------HH-HHHHHH-HH
Q 009700 214 KLSMLRNATWTLSNFCRGK--PPAPFDQV----RPALAALQHLIFSSD--------------------EE-VLTDAC-WA 265 (528)
Q Consensus 214 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~----~~~l~~L~~ll~~~d--------------------~~-v~~~a~-~~ 265 (528)
+.++...++..-..|+..- ........ ..+++.++.-+.-++ ++ ..-... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 6677666665554554321 11122223 344555554444322 00 010000 22
Q ss_pred HHhhccCC-hHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcc-----
Q 009700 266 LSYLSDGT-NDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ----- 337 (528)
Q Consensus 266 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----- 337 (528)
|.+++.-. ++.... +++.+...+.. .+|..++.+++++|.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222211 111111 33444444443 579999999999999998765432222223467778888764
Q ss_pred cCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHH--------
Q 009700 338 NYKKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQ-------- 406 (528)
Q Consensus 338 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------- 406 (528)
. ...++..++|++|..+. ..++... .++..|+..+...++.++..||+++.+++..+......
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 3 45567788999999875 2333222 25566777777778899999999999999865432210
Q ss_pred HHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 407 FLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 407 ~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++- .++..+...+..-++.-...+.+++..++...+
T Consensus 586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123334444444566666777888888777654
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.46 E-value=2.1e-05 Score=84.41 Aligned_cols=303 Identities=13% Similarity=0.145 Sum_probs=207.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hh
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EH 150 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~ 150 (528)
.+..+++.+...+...+..++..+..++....... .+..+++..|...+.+..++ +.|+.++..++.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 45667777776555566777888888776431111 11136788888888765423 888899999985321 12
Q ss_pred HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcC
Q 009700 151 TRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCR 230 (528)
Q Consensus 151 ~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~ 230 (528)
.+.++ .+.+|.++..+.+....++..|..++..++...+...- ..+++.|+..|........+..++.++..|+.
T Consensus 89 ~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 89 VEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp THHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 22222 26889999999888899999999888888744332211 22578888888555578899999999999997
Q ss_pred CCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh-HHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 231 GKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
..|......+..++|.+...+.+..++|...+..++..+|.--+ ..+. ..+|.|+..+.+++. ...++..|+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~ 236 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLG 236 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHT
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhh
Confidence 65433334557889999999999999999998888887775211 1111 478999999998854 455666666
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCcHHHHHHHHcc-CChHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA--GSRSQIQAVIEANIIAPLVYLLQH-AEFEVK 386 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~ 386 (528)
.-+--.....-.+ +-.+|.|..-|... ...+++.++-++.|+|. .+|.....++. .++|.|-..... .+|++|
T Consensus 237 ~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 237 ATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp TCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred cCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence 5443222211111 12355666666666 78899999999999997 67877776664 478887776654 489999
Q ss_pred HHHHHHHHHhc
Q 009700 387 KEASWAISNAT 397 (528)
Q Consensus 387 ~~a~~aL~nl~ 397 (528)
..|..|+..+.
T Consensus 313 ~~~~~a~~~l~ 323 (986)
T 2iw3_A 313 EVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887773
No 87
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.45 E-value=6.8e-05 Score=73.04 Aligned_cols=322 Identities=13% Similarity=0.087 Sum_probs=191.2
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCC--chhHHHHhcCc-HHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 73 SIPSMVQGVL-SENSGLQLEATTQFRKLLSIERC--PPIEEVIRAGV-VPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 73 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~g~-i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
....+++.|. ....++....+..+..++...+. .....+.+..- ...+...+...+++-.+..|..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 4567888777 45677777778888888876310 11223333222 22233322234425555666666666654222
Q ss_pred hhHHHHHhcCChH--HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcC--ChHHHHHhhcc------------
Q 009700 149 EHTRVVIEHGAVP--KFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHG--ALMPLLAQLNE------------ 211 (528)
Q Consensus 149 ~~~~~i~~~g~i~--~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~Ll~ll~~------------ 211 (528)
...+.+- ..+. -++..|.. ++...+..++.+|..+.... .+|..+.+.+ .+++++..+..
T Consensus 158 ~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 158 HNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp CCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 2111110 1112 34455554 34555677888888887654 4788876543 35666544321
Q ss_pred ----chhhHHHHHHHHHhhhhcCCCCCCChhhhHH--HHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCh----HHHH-H
Q 009700 212 ----HSKLSMLRNATWTLSNFCRGKPPAPFDQVRP--ALAALQHLIFS-SDEEVLTDACWALSYLSDGTN----DKIQ-A 279 (528)
Q Consensus 212 ----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~-~ 279 (528)
.....++.+++.+++-|+..++........+ .++.|+..++. ..+.+.+-++.++.|+..... .... .
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~ 314 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL 314 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 1145678889999999987743111111122 33566666664 568999999999999998652 2222 2
Q ss_pred HHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHh-------hc--------------CCcchhH-HH--------h--c
Q 009700 280 VIEAGVCPRLVELLLH---SSTTVLVPALRTVGNI-------VT--------------GDDTQTQ-CV--------I--D 324 (528)
Q Consensus 280 ~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l-------~~--------------~~~~~~~-~~--------~--~ 324 (528)
++..++ ..++..|.. .++++....-.....+ ++ -++.+.. .+ . +
T Consensus 315 ~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~ 393 (480)
T 1ho8_A 315 LLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393 (480)
T ss_dssp HHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred HHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence 333444 446666654 3444332211111111 10 0111111 11 1 2
Q ss_pred cCChHHHHHHhcc---------cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHH
Q 009700 325 NQGLPRLYQLLTQ---------NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISN 395 (528)
Q Consensus 325 ~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n 395 (528)
..++..|+++|.+ +.++.+..-||.=|+.++...|..+..+-+.|+=..++++|.++|++||.+|+.|+..
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2467889999973 2278899999999999999888888877788999999999999999999999999987
Q ss_pred hcC
Q 009700 396 ATS 398 (528)
Q Consensus 396 l~~ 398 (528)
+..
T Consensus 474 lm~ 476 (480)
T 1ho8_A 474 IIG 476 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.33 E-value=2.1e-05 Score=72.78 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=144.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHh
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVI 323 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 323 (528)
...++.-|.+.+.+.+..++.-|..+...+.+....++..+++..|+......+...+..++++++++....+.....+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 33455566677888899999999985555566889999999999999999999999999999999999986555433344
Q ss_pred ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CcHHHHHHHHc---cCChHHHHHHH
Q 009700 324 DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE--------A--NIIAPLVYLLQ---HAEFEVKKEAS 390 (528)
Q Consensus 324 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 390 (528)
...++.++..++.+. ...|.+.|+.+|-.++..++.....+.+ . ..++.|+.+|. +.+.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 567889999999976 8999999999999998755433322222 1 24778999997 67899999999
Q ss_pred HHHHHhcCCCC-HH----HHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 009700 391 WAISNATSGGT-RE----QIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 441 (528)
Q Consensus 391 ~aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~ 441 (528)
..|..+..+.+ .+ ....+-+.|+=..+..+++.. +++++++ +......++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~~ 335 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENALK 335 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHhh
Confidence 88887776654 23 233444566666777777765 6677665 344444443
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.33 E-value=0.00015 Score=80.84 Aligned_cols=344 Identities=11% Similarity=0.094 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHHHHh--
Q 009700 84 ENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT--SE---HTRVVIE-- 156 (528)
Q Consensus 84 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~i~~-- 156 (528)
.+..++..++.++..++.- .+...+.+..+++.+.+.+.. + ++++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 4566778888888877653 234445667788888743322 4 899999999999998742 21 1111111
Q ss_pred cCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhCC-------ChhHHHHHHhcCChHHHHHhhccchhh
Q 009700 157 HGAVPKFVQ-LL-------------GSASDDVREQAVWALGNVAGD-------SPSCRDLVLSHGALMPLLAQLNEHSKL 215 (528)
Q Consensus 157 ~g~i~~L~~-lL-------------~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~Ll~ll~~~~~~ 215 (528)
.+.+..+.. ++ ...+.+.....+..+..+... .+..+..+. .+++.++... ..++.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHH-cCCcH
Confidence 112222211 11 112344444555555443321 111222211 2355555554 44577
Q ss_pred HHHHHHHHHhhhhcC----CCCC--CChhhhHHHHHHHHHHhcCC-------------------CH---HHHHHHHHHHH
Q 009700 216 SMLRNATWTLSNFCR----GKPP--APFDQVRPALAALQHLIFSS-------------------DE---EVLTDACWALS 267 (528)
Q Consensus 216 ~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l~ 267 (528)
++...++..+..++. .+.. ........+++.++..+..+ |. .....+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 777888777777766 3211 11223355566666554321 10 12223444555
Q ss_pred hhccCChHHHHHHHHhCcHHHHHHHhc--CCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcc-----cCc
Q 009700 268 YLSDGTNDKIQAVIEAGVCPRLVELLL--HSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQ-----NYK 340 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~ 340 (528)
.++...+.. ++. -+.+.+-..+. ..+|..+..+++++|.++.+.......-+-..+++.+..+... + +
T Consensus 439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~ 513 (1049)
T 3m1i_C 439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K 513 (1049)
T ss_dssp HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence 555332211 111 13344445554 3678889999999999986544321111111244445443321 2 5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHH--------HHHHHCC
Q 009700 341 KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQI--------QFLVSQG 412 (528)
Q Consensus 341 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~~ 412 (528)
+.++..++|+++.++.-....-+ .+ ..+++.++..+.+.++.|+..|++++.+++..+..... .++- .
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~-~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~--~ 589 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWN-FL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ--T 589 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH--H
Confidence 56666799999988642111111 12 13677788888888899999999999999985443221 1211 2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
++..+..++..-+.+-...+.+++..++...+
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 34444455555555555667788877776543
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.32 E-value=0.00043 Score=76.52 Aligned_cols=339 Identities=12% Similarity=0.097 Sum_probs=189.8
Q ss_pred cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCC
Q 009700 125 DRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL---GSASDDVREQAVWALGNVAGDSPSCRDLVLSHGA 201 (528)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~ 201 (528)
.+.+ ...+..++++++.++.+-.+.. ...++.++..+ ..+++.++..++|+++.++..-....+. + ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHH
Confidence 3344 6788999999999998543211 12334444433 3357889999999999997432111122 2 247
Q ss_pred hHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCh-HHHH
Q 009700 202 LMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGTN-DKIQ 278 (528)
Q Consensus 202 i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 278 (528)
++.++..+ .+ +.++..|++++.+++...+..-......++..+..++... +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77788877 33 7899999999999997543222334567777777777753 56788888889998876543 3444
Q ss_pred HHHHhCcHHHHHHHhc----CC-ChhhHH---HHHHHHhHhhcCCcc---------------------hhHHHhccCChH
Q 009700 279 AVIEAGVCPRLVELLL----HS-STTVLV---PALRTVGNIVTGDDT---------------------QTQCVIDNQGLP 329 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~----~~-~~~v~~---~al~~L~~l~~~~~~---------------------~~~~~~~~~~l~ 329 (528)
..++. +++.+...+. .. ++..+. ..+.+|+.++..-.. ..-..+-..+++
T Consensus 608 ~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 43333 4544444442 22 333333 455555555432110 000111223455
Q ss_pred HHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH----Hcc-CChHHHHHHHHHHHHhcC--CCC
Q 009700 330 RLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYL----LQH-AEFEVKKEASWAISNATS--GGT 401 (528)
Q Consensus 330 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~nl~~--~~~ 401 (528)
.+..++... .+..+.+.+|.++..++....+... ..+|.++.. +.. +.+ ..++.++.++. +..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 555555432 1568899999999987642111111 123433333 222 222 23344444433 221
Q ss_pred H---HHHHHHHHCCChHHHHhhcC---CCChHHHHHHHHHHHHHHHhhhhchhccCCcchh-hHHHhhhcccHHHHHHHh
Q 009700 402 R---EQIQFLVSQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKIGEADKEAGSTTANV-YSEMIDECDGLDKIENLQ 474 (528)
Q Consensus 402 ~---~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~L~ 474 (528)
+ ..+..+.+ .++..+..++. ..+++++......+..++......-... .. +... ++.+....
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~----~~~~~~i------~~~~~~~l 826 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCE----RLDVKAV------FQCAVLAL 826 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCT----TSCHHHH------HHHHHHHT
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCC----cccHHHH------HHHHHHHc
Confidence 1 12221111 12333333332 2468999999999999998776432110 00 1111 23344445
Q ss_pred cCCCHHHHHHHHHHHHHhcCC
Q 009700 475 SHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 475 ~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+++.++...+..++..++..
T Consensus 827 ~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 827 KFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 689999999999999988754
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.24 E-value=0.00011 Score=81.21 Aligned_cols=330 Identities=12% Similarity=0.059 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHH---HHh--cCCh
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS--EHTRV---VIE--HGAV 160 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~---i~~--~g~i 160 (528)
+...++.++...+... .... ....+++.+++++. + ++++..|+.++..+..... ..... ++. .+..
T Consensus 218 ~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~ 290 (963)
T 2x19_B 218 VRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQ 290 (963)
T ss_dssp HHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhH
Confidence 5555666655444321 1110 12445777777774 3 6789999999999998432 11111 111 1122
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh--------cCChHHHHHhhcc----chhhHHHHHHHHHhhhh
Q 009700 161 PKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS--------HGALMPLLAQLNE----HSKLSMLRNATWTLSNF 228 (528)
Q Consensus 161 ~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~--------~g~i~~Ll~ll~~----~~~~~~~~~a~~~L~~l 228 (528)
+.+...+...+.+.....+.++..++...+. .+.. ...+..++.+... ..+..+...++..+..+
T Consensus 291 ~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l 367 (963)
T 2x19_B 291 EQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL 367 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence 3232333344555555666666666532211 1110 1234444444422 12444555555555555
Q ss_pred cCCCCC-------CCh----hhhHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHhhccCChHHHHHHHH
Q 009700 229 CRGKPP-------APF----DQVRPALAALQHLIFSSDEE---------------VLTDACWALSYLSDGTNDKIQAVIE 282 (528)
Q Consensus 229 ~~~~~~-------~~~----~~~~~~l~~L~~ll~~~d~~---------------v~~~a~~~l~~l~~~~~~~~~~~~~ 282 (528)
+..... ... ..+..+++.++..+..++++ .+..+..++..++..... .++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~ 444 (963)
T 2x19_B 368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLS 444 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHH
Confidence 442100 001 12234455555555432211 123333344443321110 1111
Q ss_pred hCcHHHHHHHh----cCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh---cccCchhHHHHHHHHHHHHh
Q 009700 283 AGVCPRLVELL----LHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL---TQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 283 ~~~l~~L~~lL----~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~ 355 (528)
-+++.+...+ .+.++..+..++++++.++.+..... ...++.++..+ ..+ ++.++..++|+++.++
T Consensus 445 -~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~ 517 (963)
T 2x19_B 445 -NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALS 517 (963)
T ss_dssp -HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHH
Confidence 1334444555 56788899999999999998754321 12334444443 334 6789999999999997
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC--CChHHHHHHH
Q 009700 356 AGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC--PDPRIVTVCL 433 (528)
Q Consensus 356 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~~l 433 (528)
....... ..+ ..+++.++..|.+ +.|+..|+++|.+++..+......++ ..++..+..++.. -+...+..++
T Consensus 518 ~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 518 EWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHH
Confidence 5211111 222 3688889888854 78999999999999864432211221 1245555566654 2567888889
Q ss_pred HHHHHHHHhh
Q 009700 434 EGLENILKIG 443 (528)
Q Consensus 434 ~~l~~i~~~~ 443 (528)
+++..++...
T Consensus 592 eai~~i~~~~ 601 (963)
T 2x19_B 592 QALGFLLSAL 601 (963)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 9999988654
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.23 E-value=0.00011 Score=81.23 Aligned_cols=299 Identities=12% Similarity=0.112 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh---C--CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHH
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL---G--SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMP 204 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 204 (528)
...+..|+.+++.++.+-..... ..++.++.++ . .+++.++..++|+++.++..-....+.+. .+++.
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 57889999999999886443221 2233333332 3 24899999999999999832111111111 13455
Q ss_pred HHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhccCC-hHHHHHHH
Q 009700 205 LLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS--DEEVLTDACWALSYLSDGT-NDKIQAVI 281 (528)
Q Consensus 205 Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~-~~~~~~~~ 281 (528)
++..+ + +.++..|++++.++++.....-......++..+..++..+ +...+..++.+++.++... .+.....+
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555 2 6789999999999996532111223345556666777763 5788888888888887542 12222222
Q ss_pred HhCcHHHHH----HHhcCC--ChhhHH---HHHHHHhHhhcCCc-------------chhHHHhccCChHHHHHHhccc-
Q 009700 282 EAGVCPRLV----ELLLHS--STTVLV---PALRTVGNIVTGDD-------------TQTQCVIDNQGLPRLYQLLTQN- 338 (528)
Q Consensus 282 ~~~~l~~L~----~lL~~~--~~~v~~---~al~~L~~l~~~~~-------------~~~~~~~~~~~l~~L~~lL~~~- 338 (528)
.. +++.++ .++... ++..+. .++..|+.+...-. .... .+-..+++.+..++...
T Consensus 627 ~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~ 704 (971)
T 2x1g_F 627 DI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWV 704 (971)
T ss_dssp HH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhcc
Confidence 22 333333 333333 222233 34444444432111 1111 12235778787777543
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC-C-HH---HHHHHHHCCC
Q 009700 339 YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG-T-RE---QIQFLVSQGC 413 (528)
Q Consensus 339 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~~~ 413 (528)
.+..+.+.+|++++.++.........++. .+++.|+..+..... ..+++.++.++..- . +. ....+.. ..
T Consensus 705 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~ 779 (971)
T 2x1g_F 705 EEIDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EF 779 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HH
Confidence 26689999999999986521111111111 133344433333222 23667777665522 2 11 1222221 12
Q ss_pred hHHHHhhcCC-------CChHHHHHHHHHHHHHHHhhhhc
Q 009700 414 IKPLCDLLVC-------PDPRIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 414 l~~L~~ll~~-------~~~~~~~~~l~~l~~i~~~~~~~ 446 (528)
+..+..++.. .+|+++......+..++...+..
T Consensus 780 ~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 780 IQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 3333444443 37788888888889988877654
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.22 E-value=0.0018 Score=72.15 Aligned_cols=316 Identities=10% Similarity=0.100 Sum_probs=174.2
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--hh-
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDS--PS- 191 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~--~~- 191 (528)
+++.+.+++....++.++..++.++.+...--+ ...+.+...++.+. .++ .+++++..|+.+|..+.... +.
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence 345555666544447899999999998776322 23355566677666 344 37899999999999998552 21
Q ss_pred --HHHHHHh--cCChHHHHH-----------hh--ccchhhHHHHHHHHHhhhhcCCC------CCCChhhhHHHHHHHH
Q 009700 192 --CRDLVLS--HGALMPLLA-----------QL--NEHSKLSMLRNATWTLSNFCRGK------PPAPFDQVRPALAALQ 248 (528)
Q Consensus 192 --~~~~~~~--~g~i~~Ll~-----------ll--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~ 248 (528)
+...+.. .+.+..+.. .+ ..+.+.+.....+..+..+.... +......+..+++.++
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 1111111 111221111 01 01234555555555554433210 1111223456778888
Q ss_pred HHhcCCCHHHHHHHHHHHHhhcc----C--ChHHHHHHHHhCcHHHHHHHhcCCCh----------------------hh
Q 009700 249 HLIFSSDEEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLLHSST----------------------TV 300 (528)
Q Consensus 249 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v 300 (528)
.+...++.++...++..+..+++ . .......++. .+++.++..+..++. ..
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 87778888888888777766665 1 1112222222 245555555533210 11
Q ss_pred HHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc
Q 009700 301 LVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ 379 (528)
Q Consensus 301 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 379 (528)
+..+..+|..++....... +. -+.+.+...+.++ .+...+..++|+++.++.+.......-+-..+++.|..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~~~---l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDT---EE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHH---HH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 3334445555553222211 11 1234444555431 26788999999999998643332111111125555555332
Q ss_pred -----cCChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 380 -----HAEFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 380 -----~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.+++.++..++|+++.++..- .++.... +++.++..+.+.++.++..|+.+|.+++.....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 134556667999999776431 2333222 577788888888899999999999999987543
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.17 E-value=0.00065 Score=74.62 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=178.5
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-C--h-
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGD-S--P- 190 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~--~- 190 (528)
+++.+..+|..+.++++...++.++.....- -....+++.+.++.++ .+|. +++++..|+.+|..+... . +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 4555556665444478888899999998872 2345677788899999 8885 678999999999999862 2 2
Q ss_pred -hHHHHHHh--cCChHHH-----------HHhh--ccchhhHHHHHHHHHhhhhcCCCC-----CCC-hhhhHHHHHHHH
Q 009700 191 -SCRDLVLS--HGALMPL-----------LAQL--NEHSKLSMLRNATWTLSNFCRGKP-----PAP-FDQVRPALAALQ 248 (528)
Q Consensus 191 -~~~~~~~~--~g~i~~L-----------l~ll--~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~ 248 (528)
.+-+.+.. .+.+..+ -..+ ....+.+.....+..+..+..... .+. ...+..++..|+
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 12211111 0011111 1111 123456777777777765544321 011 122233445666
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccC------ChHHHHHHHHhCcHHHHHHHhcCCCh---------h------------hH
Q 009700 249 HLIFSSDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLLHSST---------T------------VL 301 (528)
Q Consensus 249 ~ll~~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~~~---------~------------v~ 301 (528)
.+...+|.++...++..-..+++. .......++. .+++.++..+..+.. . ..
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 666677888877766655455431 0111122222 145555555554330 0 00
Q ss_pred HHHH-HHHhHhhcCCc-chhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHH
Q 009700 302 VPAL-RTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRS-QIQAVIEANIIAPLVYL 377 (528)
Q Consensus 302 ~~al-~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~l 377 (528)
-... .+|..++.-.. .... -+++.+.+.+.++ .+...++.++|+++.++.+..+ .-..++. .++|.|+.+
T Consensus 430 f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l 503 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDL 503 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHh
Confidence 0011 22333322111 1111 1223344444432 2788999999999999875433 2333332 378888888
Q ss_pred Hcc-----CChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 378 LQH-----AEFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 378 l~~-----~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
+.. ....++..++|+++.++..- .++..+. ++..|...+..+++.+...|++++.+++..+..
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 864 33456778889999876532 2333333 566777777778899999999999999987654
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.13 E-value=3.8e-05 Score=84.16 Aligned_cols=303 Identities=11% Similarity=0.011 Sum_probs=168.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hhhHHHHHhcCCh
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT--SEHTRVVIEHGAV 160 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i 160 (528)
+.++.++..++.++...++- .+...++..++++.+.++|.+ ++++..|+.||+.+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788888999999988763 456677778899999999864 789999999999998843 2333233322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hHHHH--HHhcCChHHHHHhhccchhhHHHHHHHHHh
Q 009700 161 PKFVQLLG--SASDDVREQAVWALGNVAG------DSP-----SCRDL--VLSHGALMPLLAQLNEHSKLSMLRNATWTL 225 (528)
Q Consensus 161 ~~L~~lL~--~~~~~i~~~a~~~L~nl~~------~~~-----~~~~~--~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L 225 (528)
...+..+. ..+.++.+..+..+..++. ..+ +.+.. -.-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11222222 3566776655555544421 111 11111 01124677777777 455566666665555
Q ss_pred hhhcCCC---CC--CC----hhhhHHHHHHHHHHhcCCC-----H-----------HHHHHHHHHHHhhc-cCChHH-HH
Q 009700 226 SNFCRGK---PP--AP----FDQVRPALAALQHLIFSSD-----E-----------EVLTDACWALSYLS-DGTNDK-IQ 278 (528)
Q Consensus 226 ~~l~~~~---~~--~~----~~~~~~~l~~L~~ll~~~d-----~-----------~v~~~a~~~l~~l~-~~~~~~-~~ 278 (528)
..+.... +. .. ...+..+++.++.-+..++ . +.|.... ++...+ .-.++. ..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 5444221 11 11 1233445555555444211 1 2333333 332222 112211 11
Q ss_pred HHHHhCcHHHHHHHhc---CCChhhHHHHHHHHhHhhcCCcchhHHH-----hccCChHHHHHHhc-----ccCchhHHH
Q 009700 279 AVIEAGVCPRLVELLL---HSSTTVLVPALRTVGNIVTGDDTQTQCV-----IDNQGLPRLYQLLT-----QNYKKSIKK 345 (528)
Q Consensus 279 ~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~~l~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~ 345 (528)
.+.+. +.+.+...+. +.+|..++.++.+++.++.+.......+ .-..+++.+..++. .+ ++.|+.
T Consensus 436 ~~~~~-i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYSA-ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 11111 2222333342 3468889999999999988754322111 00124455666654 44 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc------cCChHHHHHHHHHHHHhcCCCC
Q 009700 346 EACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ------HAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 346 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
.++|+++..+.-... +...+|.++..+- +++..++..|++++.+++..+.
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999998762211 1234555555544 4567899999999999987654
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.11 E-value=0.00012 Score=67.88 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=144.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009700 287 PRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVI 366 (528)
Q Consensus 287 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 366 (528)
..++.-|.+.+...+..++.-|..+..........++..+++..|+.+.... +...+..++.++.++..+ .....-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchh
Confidence 3455666677788899999999997766777788899999999999999998 999999999999999873 44454455
Q ss_pred -HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHH--------HC--CChHHHHhhcC---CCChHHHHHH
Q 009700 367 -EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLV--------SQ--GCIKPLCDLLV---CPDPRIVTVC 432 (528)
Q Consensus 367 -~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~l~~L~~ll~---~~~~~~~~~~ 432 (528)
...+|..+..++.+.+..|.+.|+..|..++...+. ....+. +. ..+..|+.+|. +.|.+++..+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 455788888899988899999999999988775421 111111 11 24778889997 7899999999
Q ss_pred HHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCC--CHHHHHH
Q 009700 433 LEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHD--NNEIYEK 484 (528)
Q Consensus 433 l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~--~~~v~~~ 484 (528)
+..|..++...+.... ...+...+++.|.-..+...+... ++++.+.
T Consensus 278 mtLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999999988764331 234788899888888888876554 6666543
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.08 E-value=0.00057 Score=73.48 Aligned_cols=300 Identities=15% Similarity=0.175 Sum_probs=200.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhHHHHH
Q 009700 120 FVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS---PSCRDLV 196 (528)
Q Consensus 120 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~---~~~~~~~ 196 (528)
+++-+...+ ..-...++..+.++..+..... .+..+++..|.+.+...... +.|+.++..||... +..-..+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455433 3334566667777655331111 11125667777777764333 99999999999443 2222233
Q ss_pred HhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCChH
Q 009700 197 LSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS-DEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 197 ~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~ 275 (528)
+ +.++.++..+ .+....++..|-.++..+...-+ ...+..++|.|...+.+. .+.....++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4678888887 56667888888888777775532 223478899999988765 689999999999999976665
Q ss_pred HHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcc-hhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDT-QTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
.....+. .++|.+...+.+..+.+...|..++..+|..-+. .. ..++|.|++.+.++ +. ..++...|+.-
T Consensus 168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT 238 (986)
T ss_dssp HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence 5444333 4899999999999999999999999988863221 11 14678888888876 33 33444444432
Q ss_pred hc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC-CHHHHHHHHHCCChHHHHhhcCC-CChHHH
Q 009700 355 TA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGG-TREQIQFLVSQGCIKPLCDLLVC-PDPRIV 429 (528)
Q Consensus 355 ~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~ 429 (528)
+- -..... .+ ++|.|.+-|......+++.++.++.|++.-- ++.....++. .+++.+....+. .+|+++
T Consensus 239 tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 239 TFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp CCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHH
T ss_pred eeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHH
Confidence 21 122221 11 5789999999999999999999999998743 4544444332 467777665554 799999
Q ss_pred HHHHHHHHHHHHhhhh
Q 009700 430 TVCLEGLENILKIGEA 445 (528)
Q Consensus 430 ~~~l~~l~~i~~~~~~ 445 (528)
+.+-.++..+.+.+..
T Consensus 313 ~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 313 EVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999888876654
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.83 E-value=0.00061 Score=74.69 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=168.3
Q ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhHHHHHHhcCChHH
Q 009700 127 HDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDS--PSCRDLVLSHGALMP 204 (528)
Q Consensus 127 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~ 204 (528)
.+ +.+...++.++.....- -....+++.+.++.+..+|.. ++++..|+.+|..+.... +..+..++..=.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 78999999999999872 234556667788888888864 899999999999998544 332222222101122
Q ss_pred HHHhhcc-chhhHHHHHHHHHh-------hhhcCCCCC-CC-------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 205 LLAQLNE-HSKLSMLRNATWTL-------SNFCRGKPP-AP-------FDQVRPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 205 Ll~ll~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
.+..+.. ..|.++.+..+..+ ..+ ...+. .. .....++++.++.++.++++++...++..+..
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222211 34555554443333 233 22221 11 13346788999999999998888777666655
Q ss_pred hccC---------ChHHHHHHHHhCcHHHHHHHhcCCCh----------------hhHHHHHHHHhHhh-cCCcchhHH-
Q 009700 269 LSDG---------TNDKIQAVIEAGVCPRLVELLLHSST----------------TVLVPALRTVGNIV-TGDDTQTQC- 321 (528)
Q Consensus 269 l~~~---------~~~~~~~~~~~~~l~~L~~lL~~~~~----------------~v~~~al~~L~~l~-~~~~~~~~~- 321 (528)
+... -......++.. +++.++.-+..++. ..|.... .+-..+ .-.+...-.
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~-Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKS-LLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHH-HHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHH-HHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 4421 01122222222 44555555544211 1232222 222222 212211111
Q ss_pred HhccCChHHHHHHhc---ccCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----cCcHHHHHHHHc-----cCChHHHHH
Q 009700 322 VIDNQGLPRLYQLLT---QNYKKSIKKEACWTISNITAGSRSQIQAVI-E----ANIIAPLVYLLQ-----HAEFEVKKE 388 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~ 388 (528)
+.+ -+.+.+.+.+. +. +...++.++.+++.++.+......... . ..+++.+..++. ..++.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 110 11122223332 23 567889999999999875332111000 0 113455556655 568999999
Q ss_pred HHHHHHHhcCCCC--HHHHHHHHHCCChHHHHh--hcCCCChHHHHHHHHHHHHHHHhhhh
Q 009700 389 ASWAISNATSGGT--REQIQFLVSQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 389 a~~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~--ll~~~~~~~~~~~l~~l~~i~~~~~~ 445 (528)
++++++..+..-. ++.... ++..++. .+.++++.++..+..++.++++....
T Consensus 515 ~~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 515 YMEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 9999999876531 222221 3445555 55567788999999999999987764
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.77 E-value=0.0062 Score=66.83 Aligned_cols=315 Identities=11% Similarity=0.132 Sum_probs=170.9
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKF-VQLLGSASDDVREQAVWALGNVAGD-SPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~ 193 (528)
+++.+..+|....++++...++.+|..+.+= -....+++.+.++.+ ..+| ++++++..|+.+|..+... .+.+.
T Consensus 207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~ 282 (1073)
T 3gjx_A 207 IFQLCQFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYE 282 (1073)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchH
Confidence 3444445554444478888888999988872 234567778888887 4666 4678999999999999854 33332
Q ss_pred HHHHh--cCChHHHHHhh------------ccchhhHHHHHHHHHhhhhcCCCC-----C-CChhhhHHHHHHHHHHhcC
Q 009700 194 DLVLS--HGALMPLLAQL------------NEHSKLSMLRNATWTLSNFCRGKP-----P-APFDQVRPALAALQHLIFS 253 (528)
Q Consensus 194 ~~~~~--~g~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~ll~~ 253 (528)
+.+.. .+.+..+-.++ ....+.+.....+.++..+..... . ........++..++.+...
T Consensus 283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~ 362 (1073)
T 3gjx_A 283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV 362 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence 33211 01111111111 122345666667777665544320 0 1122234455556677677
Q ss_pred CCHHHHHHHHHHHHhhccC----C------------------hHHHHHHHHhCcHHH----HHHHhcCCCh---------
Q 009700 254 SDEEVLTDACWALSYLSDG----T------------------NDKIQAVIEAGVCPR----LVELLLHSST--------- 298 (528)
Q Consensus 254 ~d~~v~~~a~~~l~~l~~~----~------------------~~~~~~~~~~~~l~~----L~~lL~~~~~--------- 298 (528)
+|.++...++..-..+... . +.. ..+.. +++.. ++.-+..+.+
T Consensus 363 ~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~-~i~~~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 363 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYL-TVLSKVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTH-HHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHH-HHHHHHHHHHHHhcCCCccccccCcccc
Confidence 8888877765544333221 0 011 11111 12333 3333333221
Q ss_pred -hh-----------HHHHH-HHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCH-HHHH
Q 009700 299 -TV-----------LVPAL-RTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSR-SQIQ 363 (528)
Q Consensus 299 -~v-----------~~~al-~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~-~~~~ 363 (528)
.+ ...++ .++..++.-....+..+ +++.+.+.+..+ .+......+||+++.++..-. +.-.
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~ 516 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK 516 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCccccc
Confidence 00 00111 12233322111111111 233344444432 257789999999999975322 2121
Q ss_pred HHHHcCcHHHHHHHHccC-----ChHHHHHHHHHHHHhcCCC--CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHH
Q 009700 364 AVIEANIIAPLVYLLQHA-----EFEVKKEASWAISNATSGG--TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436 (528)
Q Consensus 364 ~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l 436 (528)
.++ ..+++.|+.+.... ...++...+|+++.....- .++..+. ++..|+..+...++.++..|+.++
T Consensus 517 ~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 517 RFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp HHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred chH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222 13777787777654 2346666778888875532 2333333 567788888888999999999999
Q ss_pred HHHHHhhhhc
Q 009700 437 ENILKIGEAD 446 (528)
Q Consensus 437 ~~i~~~~~~~ 446 (528)
..++..+...
T Consensus 591 ~~i~~~C~~~ 600 (1073)
T 3gjx_A 591 IKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.75 E-value=0.00046 Score=67.72 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=167.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009700 73 SIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTR 152 (528)
Q Consensus 73 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 152 (528)
-...|+..|.++..++|.-|+..||.++...+.. .|.. ...+ . ..|+++++-++-+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR----- 231 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK----- 231 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC-----
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc-----
Confidence 4567888889999999999999999999874211 1111 1222 2 45556666655521
Q ss_pred HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 153 VVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+-.+.++ --..||+.|+.+|+.+ ..-+.- ..++..++..+ ..+..+++..++-.|.++ .+
T Consensus 232 ----------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~D 292 (800)
T 3oc3_A 232 ----------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KE 292 (800)
T ss_dssp ----------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GG
T ss_pred ----------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HH
Confidence 1111222 1246899999999998 554432 33455555544 566788999999999988 11
Q ss_pred CCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCC--hhhHHHHHHHHh
Q 009700 232 KPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSS--TTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~ 309 (528)
--. ...++++.++..|.+.|++|+..|+.+|.-++ . ++.... ++..+...|.+-+ ..-....+..|+
T Consensus 293 LL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLA 361 (800)
T 3oc3_A 293 FVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLT 361 (800)
T ss_dssp GCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 111 16788999999999999999999999999998 2 223332 5667777776532 123444566777
Q ss_pred HhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHH
Q 009700 310 NIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEA 389 (528)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 389 (528)
.++..... ...+...+|.|.++|.++ -+.||..++.++..+. .....+.+ +..+|-..+.+++..+
T Consensus 362 kL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS 427 (800)
T 3oc3_A 362 KIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMA 427 (800)
T ss_dssp HHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHH
T ss_pred HHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHH
Confidence 77765532 122347899999999999 9999999999998876 22222222 2245566778888777
Q ss_pred HHHHH
Q 009700 390 SWAIS 394 (528)
Q Consensus 390 ~~aL~ 394 (528)
..+..
T Consensus 428 ~~VWk 432 (800)
T 3oc3_A 428 IKLLK 432 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.74 E-value=0.0053 Score=67.37 Aligned_cols=296 Identities=13% Similarity=0.124 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHH-HHhhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHh--cC
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRF-VEFLDRHDLPQLQFEAAWALTNIASGT-SEHTRVVIE--HG 158 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-v~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~--~g 158 (528)
+.++.+...++.++..+++= -+...+++.++++.| ..+|. + ++++..|+.||+.+.+.. ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777788888888763 356778889999988 46663 4 789999999999998742 222222211 11
Q ss_pred ChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChhHHHHHHhc-C-------ChHHHHHhhccchhhHH
Q 009700 159 AVPKFVQLLG-------------SASDDVREQAVWALGNVAGDSPSCRDLVLSH-G-------ALMPLLAQLNEHSKLSM 217 (528)
Q Consensus 159 ~i~~L~~lL~-------------~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~-g-------~i~~Ll~ll~~~~~~~~ 217 (528)
.+..+..++. ..+.+.....+.++..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 2222222221 12234445555555554322 12222211 1 223333333 4557777
Q ss_pred HHHHHHHhhhhcC----CCC-----C------------CChhhhHHHHHH----HHHHhcCCC-----------------
Q 009700 218 LRNATWTLSNFCR----GKP-----P------------APFDQVRPALAA----LQHLIFSSD----------------- 255 (528)
Q Consensus 218 ~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~l~~----L~~ll~~~d----------------- 255 (528)
...+...-..|.. ..+ . .......+++.. ++.-+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 7766554333322 111 0 011122334433 333333221
Q ss_pred ---H-----HHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC--CChhhHHHHHHHHhHhhcCCcchhH-HHhc
Q 009700 256 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--SSTTVLVPALRTVGNIVTGDDTQTQ-CVID 324 (528)
Q Consensus 256 ---~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~-~~~~ 324 (528)
. .+..+++..+.++.. .+.... +.+.+.+.+.. .+|.....+++++|.++..-....+ .++
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L- 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL- 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-
T ss_pred hhcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-
Confidence 0 122223322222221 111111 33444444443 4588899999999999854332111 121
Q ss_pred cCChHHHHHHhcccC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 325 NQGLPRLYQLLTQNY----KKSIKKEACWTISNITA---GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 325 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
..+++.|+.+..+.. ...++...+|++|..+. ..++... .++..|++.+...++.|+..|+.|+..++
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 145666666665431 23456667799998764 2333222 25667788888889999999999999998
Q ss_pred CCCC
Q 009700 398 SGGT 401 (528)
Q Consensus 398 ~~~~ 401 (528)
..+.
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 7653
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.001 Score=61.67 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=126.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchh-HHHH--hcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPI-EEVI--RAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTS 148 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 148 (528)
..+| +-+.|.|.+...|..|+..+.+++........ .... -....+.+...+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 56788999999999999999998875321111 1111 1234566777887777 8999999999998876211
Q ss_pred -----hhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHH
Q 009700 149 -----EHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNAT 222 (528)
Q Consensus 149 -----~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~ 222 (528)
.......-..++|.|+. .|.+....++..+..++..++...... .. +++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111112346777775 578888999999998888776332211 11 234555566 677888888888
Q ss_pred HHhhhhcCCC--CCC-ChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 009700 223 WTLSNFCRGK--PPA-PFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 223 ~~L~~l~~~~--~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~ 272 (528)
..|..+.... ... ....+..+++.+..++.+.|+.|+..|..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8877766542 111 1233456777888999999999999999998877554
No 103
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.50 E-value=0.059 Score=49.61 Aligned_cols=293 Identities=15% Similarity=0.136 Sum_probs=175.3
Q ss_pred HHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhc-CCCHHHHHH
Q 009700 183 GNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIF-SSDEEVLTD 261 (528)
Q Consensus 183 ~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~ 261 (528)
.|+.-+....-+-++..+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. ++++++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344455555667778888888888888 7888899999999998888664 2223345678898888776 678999999
Q ss_pred HHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCC-------Ch-------hhHHHHHHHHhHhhcC-----C-------
Q 009700 262 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHS-------ST-------TVLVPALRTVGNIVTG-----D------- 315 (528)
Q Consensus 262 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~-------~v~~~al~~L~~l~~~-----~------- 315 (528)
....++|+..+.....+..+..+.+..|...+... +. .+...+++++.|.... +
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999999888888888889999988876441 22 2344556666655321 0
Q ss_pred ---cchhHHHhccCChHHHHHHhcccC-c----hhHHHHHHHHHHHHhcCC---HHH----HHHHHHcCcHHHHHHHHc-
Q 009700 316 ---DTQTQCVIDNQGLPRLYQLLTQNY-K----KSIKKEACWTISNITAGS---RSQ----IQAVIEANIIAPLVYLLQ- 379 (528)
Q Consensus 316 ---~~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~----~~~l~~~~~i~~L~~ll~- 379 (528)
..+...+++..++..|+..|+-.. + .++|...+...--+.... .+. ++.+-+.+.+..++-.+.
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW 504 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW 504 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence 112334555567777777776431 1 234444444333332210 000 011111233333332221
Q ss_pred ---c-CC-------hHHHHHHHHHHHHhcCCC-CHHHH-HHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHHhhh
Q 009700 380 ---H-AE-------FEVKKEASWAISNATSGG-TREQI-QFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 380 ---~-~~-------~~v~~~a~~aL~nl~~~~-~~~~~-~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~ 444 (528)
. .+ ..+.+.+...|..+...+ ..++. .++ -.+..=..+|++. .|..+..++..-.++++.++
T Consensus 505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 1 11 122234444444444332 32221 111 1233344566653 57777778888888888776
Q ss_pred hchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 009700 445 ADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYW 493 (528)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~ 493 (528)
-... . ..---..++-+.+|+|+++...|..++.+|-
T Consensus 582 ~~Ad-----------~--W~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 582 TRAD-----------I--WTIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp THHH-----------H--SCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred chhc-----------c--ceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 4221 1 1112356788899999999999999998763
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.47 E-value=0.00092 Score=60.54 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=117.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHH----hcCCChhhHHHHHHHHhHhhcCC----cch
Q 009700 247 LQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL----LLHSSTTVLVPALRTVGNIVTGD----DTQ 318 (528)
Q Consensus 247 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l----L~~~~~~v~~~al~~L~~l~~~~----~~~ 318 (528)
+...+.+.|..-...++..|.......++.... .++.++.. +.+.+..+...++.+|..+...- ...
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344555566666666666666544433322211 23333333 34678888888888888775321 111
Q ss_pred hHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 319 TQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
... --.-++|.|+.-+.++ ...+|..+-.++..++.-.+ ...+++.++.-+.+.+.++|.+++..+..+..
T Consensus 126 ~~~-ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 126 SQE-EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CHH-HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111 0124688898888887 88899888887776653111 12367778888999999999999999998875
Q ss_pred CCCHHHHHHHHHCCCh---HHHHhhcCCCChHHHHHHHHHHHHHHHhhh
Q 009700 399 GGTREQIQFLVSQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKIGE 444 (528)
Q Consensus 399 ~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~ 444 (528)
..... ....+ +.+..++.+.|..++..|+.++..+.....
T Consensus 197 ~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 197 NAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22111 23468 999999999999999999999988877653
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.40 E-value=0.0059 Score=56.46 Aligned_cols=201 Identities=14% Similarity=0.120 Sum_probs=144.7
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----HHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhh
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPS----CRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNF 228 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l 228 (528)
.+...+.+..|+..|..-+-+.|..+..++.++...... ..+.+.. -...+..++....++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 445567888899999888899999999999999865432 2333333 2333334443344666667777777777
Q ss_pred cCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHhcCCChhhHHHHH
Q 009700 229 CRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLLHSSTTVLVPAL 305 (528)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al 305 (528)
.++..........+.+-.+...++.++=++..+|..++..+..........++.. .++.....+|.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7664322223334445566677788889999999999998877665555555544 3677788899999999999999
Q ss_pred HHHhHhhcCCc---chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 306 RTVGNIVTGDD---TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 306 ~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
..||.+..... -...++-+..-+..++.+|.+. +..++-+|..+.--+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 99999986433 2344555667789999999999 99999999999888776
No 106
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0068 Score=56.07 Aligned_cols=188 Identities=10% Similarity=0.089 Sum_probs=126.3
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCcchh--HHHh--ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC------
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDDTQT--QCVI--DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS------ 358 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 358 (528)
|-.-|.+.+|..|..|+..+..+........ .... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 6678899999999999999988876543211 1111 123456677788887 9999999999999887521
Q ss_pred HHHHHHHHHcCcHHHHHHH-HccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHH
Q 009700 359 RSQIQAVIEANIIAPLVYL-LQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437 (528)
Q Consensus 359 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~ 437 (528)
....... -..++|.|+.- +.+....++..|..++..++....+. . .+++.+...+.+.+|.++..++..|.
T Consensus 93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1112122 23467777764 67788899999988887776533211 1 13567778889999999999999999
Q ss_pred HHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 438 NILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 438 ~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
.++........ ...+.... .+..+..+.++.|++|+..|..++-.+|-
T Consensus 165 ~~l~~fg~~~~----~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNV----NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTC----CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcC----CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 98875432110 01111221 23556777899999999999999877665
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.38 E-value=0.034 Score=51.48 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=152.9
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhh------HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQV------RPALAALQHLIFSSDEEVLTDACWALSY 268 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~l~~L~~ll~~~d~~v~~~a~~~l~~ 268 (528)
.+...+.+..|+..| ..-+-+.+..++.++.++.+.........+ ..++..|+..-.++ ++.-.+-..|..
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~--diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc--hhHhHHHHHHHH
Confidence 345556778888888 667788999999999999988743332221 34445555544433 333333333443
Q ss_pred hccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhcc---CChHHHHHHhcccCchhHHH
Q 009700 269 LSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDN---QGLPRLYQLLTQNYKKSIKK 345 (528)
Q Consensus 269 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~ 345 (528)
.. ..+.....++..+.+..+...+..++-.+...|..++..+.+.........+.. .++..+..+|.++ +.-.|+
T Consensus 150 ci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 150 CI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp HH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 33 345566667777888899999999999999999999999887665544344432 3567788889998 999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCC--CHHHHHHHHHC--CChHHHH
Q 009700 346 EACWTISNITAG--SRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGG--TREQIQFLVSQ--GCIKPLC 418 (528)
Q Consensus 346 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~--~~l~~L~ 418 (528)
.++..|+.+... +.......+ +..-+..++.+|.+....++-+|..++.-++.+. +++....+..+ .++..|-
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~ 307 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 307 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999863 444443444 4456888999999999999999999998887753 34444444432 3444444
Q ss_pred hhcC
Q 009700 419 DLLV 422 (528)
Q Consensus 419 ~ll~ 422 (528)
+...
T Consensus 308 ~f~~ 311 (341)
T 1upk_A 308 KFQN 311 (341)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 4444
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0059 Score=55.29 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=116.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhc----CCCCC
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFC----RGKPP 234 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~----~~~~~ 234 (528)
.+...|-+.+..-+..++..|.......+. .+.. .+..+++.+. .+.+..+...++.+|..+. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555666666666666665433332 2111 2333333221 2456667777776666553 32222
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcC
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTG 314 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~ 314 (528)
........++|.|+.-+.++.+.++..+-.++..++...+ ...+++.++..+.+.++..+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 2223346789999999988888998888777766653211 113678888899999999999999999999754
Q ss_pred CcchhHHHhccCCh---HHHHHHhcccCchhHHHHHHHHHHHHhc
Q 009700 315 DDTQTQCVIDNQGL---PRLYQLLTQNYKKSIKKEACWTISNITA 356 (528)
Q Consensus 315 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 356 (528)
.... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 3322 13467 8999999998 99999999999987754
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.19 E-value=0.016 Score=51.17 Aligned_cols=139 Identities=10% Similarity=0.128 Sum_probs=103.8
Q ss_pred HHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHH
Q 009700 302 VPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY----KKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVY 376 (528)
Q Consensus 302 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ 376 (528)
..|+..+-.++++.+ ....++++.+.-.|..+|+... -..+|-.++.+++.+.. ++++.+..+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpe-tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPE-TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTT-THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 445666666676444 4557889999889999997652 14688889999999886 78899999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC--------CChHHHH-hhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 377 LLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 377 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
.++.++.-.|.-|...+..+.. +.....|+... .++..++ .+.+.+++.+.+.++.+..++.+..
T Consensus 153 ime~GselSKtvAtfIlqKIL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHhhccHHHHHHHHHHHHHHhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999887 34555544321 1232222 3446688889888888888777543
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.07 E-value=0.13 Score=49.85 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH
Q 009700 170 ASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH 249 (528)
Q Consensus 170 ~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ 249 (528)
+++..+..|+..|.....+-|..++. ++..++.++ .+.+..++..+...|..+|.+ ..+..+..+|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 56899999999999999999987776 678899999 888999999999999999987 336788999999
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhh
Q 009700 250 LIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIV 312 (528)
Q Consensus 250 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~ 312 (528)
+|+++++.-...+-++|..+...++.. .+..+...+...++.+|+.++..|..-.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999998877777777777776655422 3344444444467889999888886544
No 111
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.94 E-value=0.073 Score=49.03 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=121.0
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHH
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKE 346 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 346 (528)
.++.-++.+.++-++..+++..+...+..++..+....+..|-..+....-.. .-+ ...++.++..+.-..+.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccc-cccchHHHHHhccCCCcceEEe
Confidence 34444566688889999999999999999999999999998887765332111 111 2568888888864448899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC-------ChHHHHHHHHHHHHhcC-------------CC------
Q 009700 347 ACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA-------EFEVKKEASWAISNATS-------------GG------ 400 (528)
Q Consensus 347 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~-------------~~------ 400 (528)
....|+|..++.....+..+..|.++.|...+... +..-++.||..++|... +|
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999999888888888999999999887543 34455666666655421 11
Q ss_pred C--HHHHHHHHHCCChHHHHhhcCCCC---h---HHHHHHHHHHHHHH
Q 009700 401 T--REQIQFLVSQGCIKPLCDLLVCPD---P---RIVTVCLEGLENIL 440 (528)
Q Consensus 401 ~--~~~~~~l~~~~~l~~L~~ll~~~~---~---~~~~~~l~~l~~i~ 440 (528)
. ..+...+++.++++.|+.+|+.+. + +++..++..+.-++
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 1 234445566678889998887543 2 34555555554444
No 112
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.80 E-value=0.0074 Score=59.42 Aligned_cols=245 Identities=13% Similarity=0.086 Sum_probs=154.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc------------cchhhHHHHHHHHHhh
Q 009700 159 AVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN------------EHSKLSMLRNATWTLS 226 (528)
Q Consensus 159 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~------------~~~~~~~~~~a~~~L~ 226 (528)
....|+.-|-++..++|.-|+.+|..+..............+. ...++++. +..--.+++.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4566776677889999999999999987322110000001111 22222221 1112468999999999
Q ss_pred hhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHH
Q 009700 227 NFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALR 306 (528)
Q Consensus 227 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~ 306 (528)
.+ ..-|.. ..++..|+..+....++++..++-.|.++.+--. . . .++++.++..|.+.+++|+..|+.
T Consensus 254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-L-d~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-K-DGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-H-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-H-HHHHHHHHhhcCCcccHHHHHHHH
Confidence 99 554443 2344455555677889999999999999922211 1 2 247888999999999999999999
Q ss_pred HHhHhhcCCcchhHHHhccCChHHHHHHhcccCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHH
Q 009700 307 TVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYK-KSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEV 385 (528)
Q Consensus 307 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 385 (528)
+|..++ .+.... .++..+...|.+-.+ ..-.......|+.++...+. ...+...+|.|...+.+.-+.|
T Consensus 322 tLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 322 LLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred Hhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 999999 222222 234466666654312 22234445566666653321 0112368999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHH
Q 009700 386 KKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437 (528)
Q Consensus 386 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~ 437 (528)
|..++.+|..+.. ...... .+.++|-.++++++..++++..
T Consensus 392 R~AVL~TL~tfL~---~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLSE---ESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCCC---HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999988872 232222 2234555678888777766553
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.58 E-value=0.0029 Score=56.90 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=78.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhH
Q 009700 162 KFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVR 241 (528)
Q Consensus 162 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 241 (528)
.|..++.++++.+|..++..+ . ...+..++ ++++..++..+...+ .
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~------------ 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P------------ 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence 455556666666666655532 0 11233333 566666666666521 0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHH
Q 009700 242 PALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQC 321 (528)
Q Consensus 242 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~ 321 (528)
.+.+..+++++++.|+..++..+ . .+.+..++.++++.|+..++..+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence 01233455566677776665541 0 12333566777777777776542
Q ss_pred HhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 322 VIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 322 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
..+.|..++.++ +..||..++..++ .+.|..+ .++++.|+..|...|
T Consensus 195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 123566667777 7888887776643 2444444 777888888776544
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.57 E-value=0.073 Score=46.66 Aligned_cols=145 Identities=17% Similarity=0.042 Sum_probs=107.4
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQ-LLGSASDDVREQAVWALGNVAG-DSPSCR 193 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~-~~~~~~ 193 (528)
.++....+.+++. .++|..|+..|+.. .... .+++.+.. +-..++-.|++.++.+++.++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3566666777776 79999999988887 3111 24566666 5556889999999999999984 4443
Q ss_pred HHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCC
Q 009700 194 DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 194 ~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~ 273 (528)
..++.+.... .+++..+++.++..+.-.+.. + ........++|.|-.+..+++.-|+..+.|.|..++...
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1456667777 888999999999887665543 2 122334667888888888889999999999999999998
Q ss_pred hHHHHHHHH
Q 009700 274 NDKIQAVIE 282 (528)
Q Consensus 274 ~~~~~~~~~ 282 (528)
++.+..+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877666555
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.56 E-value=0.63 Score=45.28 Aligned_cols=289 Identities=12% Similarity=0.053 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQL 209 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll 209 (528)
+..+..|+..+.......|+..+. ++..++.+..+.+..||.+|+..|..+|.+ . .... +...|.++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence 789999999999999888877655 568899999999999999999999999987 3 2222 467788888
Q ss_pred ccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHH
Q 009700 210 NEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPR 288 (528)
Q Consensus 210 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~ 288 (528)
...+..-...+-++|..+...+| .+.+..+...+.++++.+++.++..|..-... ..+....-.+.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 55555555666666666665433 34555555555557888888887777432211 1111111112224555
Q ss_pred HHHHhcCCChhhHHHHHHHHhHhhcCCc-chhHHHhccCChHHHHHHhc------ccCchhHHHHHHHHHHHHh----c-
Q 009700 289 LVELLLHSSTTVLVPALRTVGNIVTGDD-TQTQCVIDNQGLPRLYQLLT------QNYKKSIKKEACWTISNIT----A- 356 (528)
Q Consensus 289 L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~----~- 356 (528)
+.+.|.+-...-....+.+|+.+-.... ...+. +++.+..... .. ++........++..-. .
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 6666655443333334444444432221 11111 2223333321 12 3333333333332221 1
Q ss_pred -CCHHHHHHHHHcCcHHHHHHHHccC-ChHHHHHHHHHHHHhcCCCC-HHHHHHHHHCCChHHHHhhcCCCC--------
Q 009700 357 -GSRSQIQAVIEANIIAPLVYLLQHA-EFEVKKEASWAISNATSGGT-REQIQFLVSQGCIKPLCDLLVCPD-------- 425 (528)
Q Consensus 357 -~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~-------- 425 (528)
.+.....++.+. ++|.+-.+-... ..+.|...+.++..++..++ .+....++. -++..|..++-...
T Consensus 256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~~~~ 333 (507)
T 3u0r_A 256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAENGEN 333 (507)
T ss_dssp BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC--------
T ss_pred CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCccccccccc
Confidence 456666666654 778554332221 23478888888888887665 222221111 02333333332111
Q ss_pred -----h----HHHHHHHHHHHHHHHhhhhc
Q 009700 426 -----P----RIVTVCLEGLENILKIGEAD 446 (528)
Q Consensus 426 -----~----~~~~~~l~~l~~i~~~~~~~ 446 (528)
+ .-++..+-++..+....+..
T Consensus 334 ~~~~~p~l~fS~vECLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 334 AGNEEPKLQFSYVECLLYSFHQLGRKLPDF 363 (507)
T ss_dssp ------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence 1 24577777788877766543
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.54 E-value=0.002 Score=57.99 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=96.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVL 197 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~ 197 (528)
+.|..++.+++ +.++..++..+ . .+.|..++.+++..+|..++.. +.
T Consensus 101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 34566777777 88888877642 1 1345566788999999988873 11
Q ss_pred hcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHH
Q 009700 198 SHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKI 277 (528)
Q Consensus 198 ~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~ 277 (528)
.+ ++..+.++++..++..+...+. -+.+..++.++++.|+..+...+
T Consensus 148 ----~~-~l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 148 ----PG-RLFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp ----GG-GGGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred ----HH-HHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 12 2333448889999998887521 13444677888999999887653
Q ss_pred HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHH
Q 009700 278 QAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTI 351 (528)
Q Consensus 278 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L 351 (528)
..+.|..++.++++.|+..+...++ .+.|..+ .++ +..||..+...|
T Consensus 195 -------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -------RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp -------CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred -------CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 1245777889999999999988764 2345445 666 889998876544
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.98 E-value=1.3 Score=49.85 Aligned_cols=299 Identities=9% Similarity=0.075 Sum_probs=165.6
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhc-CCCChHHHHHHHHHHHHHhcC---
Q 009700 73 SIPSMVQGVLSE--NSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLD-RHDLPQLQFEAAWALTNIASG--- 146 (528)
Q Consensus 73 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~--- 146 (528)
.+..+++.+.++ +...+.+|-..|.++-.. ++ ..+.+...|. .+.++.++..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345555555554 667788888888776433 11 2333444333 333489999999999987642
Q ss_pred --ChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hhHHHHHHhcCChHHHHHhhccchhhHHHHH
Q 009700 147 --TSEHTRVVIEHGAVPKFVQLLGS---ASDDVREQAVWALGNVAGDS-PSCRDLVLSHGALMPLLAQLNEHSKLSMLRN 220 (528)
Q Consensus 147 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~ 220 (528)
+++.+..+. ..++..+...-.. ....++...+.++..|+... |... .+.++.++.++.. +......
T Consensus 81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT--CHHHHHH
T ss_pred cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC--CHHHHHH
Confidence 334443333 3344444433211 45889999999999987331 2110 1356667777633 3345666
Q ss_pred HHHHhhhhcCCC---CCCChh-------h----hHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHH
Q 009700 221 ATWTLSNFCRGK---PPAPFD-------Q----VRPALAALQHLIFS-------------------SDEEVLTDACWALS 267 (528)
Q Consensus 221 a~~~L~~l~~~~---~~~~~~-------~----~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~ 267 (528)
++.+|..++.+- ...... . ...+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 777777776541 111000 0 12344444444432 12346667777776
Q ss_pred hhccCChHHHHHHHHhC--cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCc--chhHHHhc---cCChHHHHHHhc----
Q 009700 268 YLSDGTNDKIQAVIEAG--VCPRLVELLLHSSTTVLVPALRTVGNIVTGDD--TQTQCVID---NQGLPRLYQLLT---- 336 (528)
Q Consensus 268 ~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~---~~~l~~L~~lL~---- 336 (528)
+...--+ ...+.+.. +++.+..++. ++.++..|+.||..++.... .....++. ...+..++..+.
T Consensus 233 ~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 6554322 12233332 6677776655 46789999999999997542 21111222 111234444432
Q ss_pred ---ccCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCcHHHHHHHHccCChHHHHHHHHHHHHhcC
Q 009700 337 ---QNYKKSIKKEACWTISNITAGSRSQIQAVIE-----------ANIIAPLVYLLQHAEFEVKKEASWAISNATS 398 (528)
Q Consensus 337 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~ 398 (528)
+..+..+.+..+.++..+.. . ...++. .++++.++.+..+++..+-..++.....+..
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred CCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 11145677777777777752 1 222221 2467888888888887777777765555544
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.96 E-value=0.076 Score=47.37 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC----HH-HHHHH-----
Q 009700 340 KKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT----RE-QIQFL----- 408 (528)
Q Consensus 340 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~----~~-~~~~l----- 408 (528)
+.....+++.+|..++. +......++ ..+.+..+...+.++++.++..|+..|..++.... .+ ....+
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 34567788888888864 566677777 46678999999999999999999888877665432 11 11111
Q ss_pred -HHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 409 -VSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 409 -~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
-+..-...+++.+.. .+.+....++..+..++...+.... -..+...|..+|..+.++.|...+++++...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 223456678888874 5667777777777777766543321 2335677789999999999999999887655
No 119
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.86 E-value=0.069 Score=47.22 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCC----ChHHHHHHHHHHHHHhc-CChhhHHHHHhcCChHH
Q 009700 88 LQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHD----LPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAVPK 162 (528)
Q Consensus 88 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~ 162 (528)
-...|+..|..+++. ++....++++.+--.|..+|...+ ..-++..++.+++.+.. ++++....+.+.+++|.
T Consensus 72 RVcnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 345666677777775 677888888887777777776544 23588999999999887 56777888889999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHh-------cCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 163 FVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLS-------HGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 163 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
.++.++.+++-.+..|..++..|..+.......+.. ..++..++..+.++++..+.++++++-..|+.+
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987665433222111 113444444444667778888888888888866
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.69 E-value=0.43 Score=42.44 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=92.0
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----C------CChHHHHHHHHHHHHHhc
Q 009700 77 MVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----H------DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 77 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~ 145 (528)
+++.|++.. +......+..|+.-+...+..=++.+ ..+++..|+.+|.. . .+.+.+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 344444432 22223445566655554311224455 45667777776652 1 125788999999999987
Q ss_pred CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHHH----------hcCChHHHHHhhccc
Q 009700 146 GTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLVL----------SHGALMPLLAQLNEH 212 (528)
Q Consensus 146 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~Ll~ll~~~ 212 (528)
+....+.+.. .+.+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5666666665 4678889999999999999999999999885443 11 22221 222345566666434
Q ss_pred hhhHHHHHHHHHhhhhcCCC
Q 009700 213 SKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~ 232 (528)
.+.+.+..++..+-.+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 44555555555555555443
No 121
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.68 E-value=0.22 Score=43.71 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=100.7
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhcc-CChHHHHHHH
Q 009700 204 PLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQH-LIFSSDEEVLTDACWALSYLSD-GTNDKIQAVI 281 (528)
Q Consensus 204 ~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~ 281 (528)
.+...|..++..+++..|+.+|..+ . .....++.+.. +.......|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4444444666678999999988877 2 12567888877 5556778999999999988874 3332
Q ss_pred HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHH
Q 009700 282 EAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQ 361 (528)
Q Consensus 282 ~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 361 (528)
..++.+.....+++..+|..|...+...+....... -..-+++.|-.+..++ +.-||+...|.|..++..+|+.
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~---dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE---NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT---CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc---CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 156788899999999999998877654443211100 0012355555555666 8899999999999999999998
Q ss_pred HHHHHH
Q 009700 362 IQAVIE 367 (528)
Q Consensus 362 ~~~l~~ 367 (528)
+..+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
No 122
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.40 E-value=0.14 Score=49.36 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=106.7
Q ss_pred cCChHHHHHHhcc----------cCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHH
Q 009700 325 NQGLPRLYQLLTQ----------NYKKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAI 393 (528)
Q Consensus 325 ~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL 393 (528)
.+++..|+.+|.. ..+......++.+|..+.- +......++ ....+..|...+.+..+.++..|+..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455666666631 1134677888888888864 566677777 466799999999999999999999999
Q ss_pred HHhcCCCC----H-HHHH------HHHHCCChHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHh
Q 009700 394 SNATSGGT----R-EQIQ------FLVSQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMI 461 (528)
Q Consensus 394 ~nl~~~~~----~-~~~~------~l~~~~~l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l 461 (528)
..++.... . .... ...+..-...++..|.. .+.+....++..+..++...+.... -..+...+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef 261 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSEL 261 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----HHHHHHHH
Confidence 87776432 1 1111 11233557788888886 5777777777777777766543321 23356778
Q ss_pred hhcccHHHHHHHhcCCCHHHHHH
Q 009700 462 DECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 462 ~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
..+|..+.+..|...+++++...
T Consensus 262 ~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 262 MRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHCChHHHHHHHhcCCChhHHHH
Confidence 89999999999998888887543
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.30 E-value=0.81 Score=43.97 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=103.3
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----------CCChHHHHHHHHHHHHHh
Q 009700 76 SMVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----------HDLPQLQFEAAWALTNIA 144 (528)
Q Consensus 76 ~l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~ 144 (528)
.++..|+++. .......+..|+.-+...+..=++.++ .+++..|+.+|.. ..+...+..++.||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4555666543 223345677777766654222246666 5668888888752 112578999999999998
Q ss_pred cCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHH----------HhcCChHHHHHhhcc
Q 009700 145 SGTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLV----------LSHGALMPLLAQLNE 211 (528)
Q Consensus 145 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~----------~~~g~i~~Ll~ll~~ 211 (528)
. +......++. ...+..|...|.+.++.++..++..|+.+|.... .. ...+ .+..-+.+++..+..
T Consensus 149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 7 5566666665 4688999999999999999999999999996542 21 2222 223346777887754
Q ss_pred chhhHHHHHHHHHhhhhcCCCCC
Q 009700 212 HSKLSMLRNATWTLSNFCRGKPP 234 (528)
Q Consensus 212 ~~~~~~~~~a~~~L~~l~~~~~~ 234 (528)
..+.+....++..+-.+....+.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCCC
Confidence 45666666666666666655443
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.98 E-value=1.2 Score=41.26 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=99.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 009700 117 VPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHG----AVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPS 191 (528)
Q Consensus 117 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~ 191 (528)
+..+..+++.+. +.+.-++.++.-.+. ++.....+.+.+ ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 455555554443 445555555555554 454444444322 22233444443 456678999999999976654
Q ss_pred HHHHHHhcCChHHHHHhhc---cchhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 009700 192 CRDLVLSHGALMPLLAQLN---EHSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIF-SSDEEVLTDACWAL 266 (528)
Q Consensus 192 ~~~~~~~~g~i~~Ll~ll~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l 266 (528)
.++.+.. ....++..+. .+.+..++..+..++.|++... ..........++..+..++. ..|.+....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5666554 2233333331 4456788888888888887643 11122233445555666665 35889999999999
Q ss_pred HhhccCChHHHHHHHHhCcHHHHHHHhcC
Q 009700 267 SYLSDGTNDKIQAVIEAGVCPRLVELLLH 295 (528)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 295 (528)
+++...+.+..+.....++-..+-.....
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998765444333333444444444443
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.72 E-value=1.3 Score=48.91 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhhh----hcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHH
Q 009700 214 KLSMLRNATWTLSN----FCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 289 (528)
Q Consensus 214 ~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 289 (528)
++.++..++.+++. .|...+......+..+...+...+...+.+-...++.+|+|+..- ..++.|
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 34455555555544 454444434444667777777888888888889999999998742 245666
Q ss_pred HHHhcC-------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhccc-CchhHHHHHHHHHHHHhcCCHHH
Q 009700 290 VELLLH-------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQN-YKKSIKKEACWTISNITAGSRSQ 361 (528)
Q Consensus 290 ~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~ 361 (528)
..++.. ....++..|+++|..++...+... -+.+++++.+. .++++|..|+..|.... -+..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~- 546 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA- 546 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence 666632 234577889999999987554433 23567777432 28899999999886542 2222
Q ss_pred HHHHHHcCcHHHHHHHHcc-CChHHHHHHHHHHHHhcCCCCH
Q 009700 362 IQAVIEANIIAPLVYLLQH-AEFEVKKEASWAISNATSGGTR 402 (528)
Q Consensus 362 ~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~ 402 (528)
.+..+...+.. .+..|...+...|.+++....+
T Consensus 547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 23344445554 5788888888899998887655
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.53 E-value=1.2 Score=49.34 Aligned_cols=135 Identities=14% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHhhcc----CChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 242 PALAALQHLIFS----SDEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 242 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
..+..+..++.+ .++.++..++-+++.++. .........+. .+...+.+.+...+..-+..++++|||+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 345555566654 356677777777766643 21100000011 133445555666777778889999999986
Q ss_pred CCcchhHHHhccCChHHHHHHhcc------cCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHc--cCChHH
Q 009700 314 GDDTQTQCVIDNQGLPRLYQLLTQ------NYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQ--HAEFEV 385 (528)
Q Consensus 314 ~~~~~~~~~~~~~~l~~L~~lL~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v 385 (528)
. ..++.|.+++.. +....++..|+|+|.+++...+..++ +.|+.++. ..++++
T Consensus 470 p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 470 P-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp G-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHH
T ss_pred h-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHH
Confidence 2 234455666532 11357889999999999876665543 44566663 457899
Q ss_pred HHHHHHHHHHh
Q 009700 386 KKEASWAISNA 396 (528)
Q Consensus 386 ~~~a~~aL~nl 396 (528)
|..|+..|...
T Consensus 531 RiaA~~~Lm~t 541 (1056)
T 1lsh_A 531 RIRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.26 E-value=0.73 Score=44.38 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHH-----HHHH------
Q 009700 340 KKSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHAEFEVKKEASWAISNATSGGTRE-----QIQF------ 407 (528)
Q Consensus 340 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~------ 407 (528)
+.....+++.+|..++. +......++ ..+.+..+...+.+..+.++..++..|..++....++ ....
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 34667788888888864 556666666 4567899999999999999999988777666543211 1111
Q ss_pred HHHCCChHHHHhhcC-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHH
Q 009700 408 LVSQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEK 484 (528)
Q Consensus 408 l~~~~~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~ 484 (528)
..+..-+..+++.+. ..+.+....++..+..++...+.... -..+...|..+|..+.+..|....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 122345667888776 45667777777777777766554322 2346778889999999999999999887554
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.20 E-value=1.5 Score=49.22 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhHHHHHHhcCCh
Q 009700 130 PQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLL--GSASDDVREQAVWALGNVAGD-----SPSCRDLVLSHGAL 202 (528)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i 202 (528)
.+.+.+|-..|..+-. ++ .+...+...| .+.+..+|..|+..|-+.... +++.+..+ ...++
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll 95 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVM 95 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHH
Confidence 6788888888877654 22 1334444433 346789999999999987632 23333332 22223
Q ss_pred HHHHHhhcc--chhhHHHHHHHHHhhhhcCCC-CCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC-------
Q 009700 203 MPLLAQLNE--HSKLSMLRNATWTLSNFCRGK-PPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG------- 272 (528)
Q Consensus 203 ~~Ll~ll~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~------- 272 (528)
..+...... .....++..++.++..++... | .....+++.|+.++.+ ++.....++.+|..+++.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 332222100 134678888888888887664 3 1235677888888766 455567777788777642
Q ss_pred ChHHHHH---HHHh---CcHHHHHHHhcC-------------------CChhhHHHHHHHHhHhhcCCcchhHHHhccC-
Q 009700 273 TNDKIQA---VIEA---GVCPRLVELLLH-------------------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQ- 326 (528)
Q Consensus 273 ~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~- 326 (528)
....... .+.. .+++.+..++.. .+..+...++.++.+...--+. ..+.+..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~ 248 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC 248 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence 1111111 1111 133334444432 1234666778887766553332 1233332
Q ss_pred -ChHHHHHHhcccCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CcHHHHHHHHc--------cCChHHHHHHHHH
Q 009700 327 -GLPRLYQLLTQNYKKSIKKEACWTISNITAGS--RSQIQAVIEA---NIIAPLVYLLQ--------HAEFEVKKEASWA 392 (528)
Q Consensus 327 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a~~a 392 (528)
+++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+. ..+.++.+..+..
T Consensus 249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 6666666554 5678999999999999733 3433223221 11223444431 1235666667767
Q ss_pred HHHhcCCCCHHHHHHHHH-----------CCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 393 ISNATSGGTREQIQFLVS-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 393 L~nl~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
+..+.. . ...++. .++++.++.+..+++..+...++..-..+++.
T Consensus 326 l~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 326 LCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 666652 1 111111 13466777777777766666666555545543
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.87 E-value=0.33 Score=45.01 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=88.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcC----cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAG----VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEH 150 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g----~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 150 (528)
..+.+.++ =..+.++-++..+|-++.. ......+.+.+ ++..+...+.+...+..+..++++++|+.. ++..
T Consensus 106 ~~l~kil~-WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g 181 (304)
T 3ebb_A 106 QILWKAIN-CPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAG 181 (304)
T ss_dssp HHHHHHHT-SCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHH
T ss_pred HHHHHHHc-CCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cchh
Confidence 44444442 2234566777777755542 12222222221 233344555444346779999999999998 6667
Q ss_pred HHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHH--HHHHhcCChHHHHHhhccchhhHHHHHHHHHhh
Q 009700 151 TRVVIEH--GAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCR--DLVLSHGALMPLLAQLNEHSKLSMLRNATWTLS 226 (528)
Q Consensus 151 ~~~i~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~ 226 (528)
+..+... .+++.+...+.+++..++..++.++.|++......+ +... ..+..+...+....+.+....++.+|.
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 7766642 245555555566789999999999999984211000 1100 023334444544457778888888888
Q ss_pred hhcCC
Q 009700 227 NFCRG 231 (528)
Q Consensus 227 ~l~~~ 231 (528)
+|...
T Consensus 260 tL~~~ 264 (304)
T 3ebb_A 260 TLISD 264 (304)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 88865
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.69 E-value=3.2 Score=39.85 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=95.3
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcC----C------CChHHHHHHHHHHHHHhc
Q 009700 77 MVQGVLSEN-SGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDR----H------DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 77 l~~~l~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~ 145 (528)
++..|++.. .......+..|+.-+...+..=++.+. .+++..|+.+|.. . .+...+..++.||..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 444555432 222233456666555543112244554 4567777776642 1 125789999999999987
Q ss_pred CChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hH-HHHHH----------hcCChHHHHHhhccc
Q 009700 146 GTSEHTRVVIE-HGAVPKFVQLLGSASDDVREQAVWALGNVAGDSP-SC-RDLVL----------SHGALMPLLAQLNEH 212 (528)
Q Consensus 146 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~Ll~ll~~~ 212 (528)
+......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+..+
T Consensus 88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 5555666655 4678999999999999999999999999985443 21 22221 223455677777545
Q ss_pred hhhHHHHHHHHHhhhhcCCCC
Q 009700 213 SKLSMLRNATWTLSNFCRGKP 233 (528)
Q Consensus 213 ~~~~~~~~a~~~L~~l~~~~~ 233 (528)
.+.++...++..+-.+....+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 566666666666666665544
No 131
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.60 E-value=3.9 Score=36.65 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 75 PSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 75 ~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
-.+++..+....+.+...+...+.++... ++. .+ ..+++.++.+..+.+ .+++...+..+...+...++...
T Consensus 18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~--ll--~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-- 89 (257)
T 3gs3_A 18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAE--LA--EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-- 89 (257)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG--GH--HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH--
T ss_pred HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh--HH--HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444423368888999999977663 222 11 335778888766666 89999999999888864443322
Q ss_pred HhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009700 155 IEHGAVPKFVQLLGSASDDVREQAVWALGNV 185 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl 185 (528)
.+++.|..+|.++++.+...++.+.+++
T Consensus 90 ---~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ---HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3568888899988999999999888876
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.55 E-value=7.4 Score=37.05 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHh
Q 009700 87 GLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQL 166 (528)
Q Consensus 87 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 166 (528)
..+...+..++.++-.. ++. .-..+++.++.+-.+.+ .+++...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888876642 332 22567999999988887 99999999999888874444322 256788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 009700 167 LGSASDDVREQAVWALGNV 185 (528)
Q Consensus 167 L~~~~~~i~~~a~~~L~nl 185 (528)
|.+.++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9888999999999988887
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=91.88 E-value=6.5 Score=37.58 Aligned_cols=233 Identities=12% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
..++...+..|+.+++++++.=|+..-.+|..+-+.-...|..+.. .+-..+.+.+.......-....+.+++.+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 3344456778999999999999999999999987665555554332 122333444422222222334555555555554
Q ss_pred CCCCh-hhhHHHHHHHHHHhcCCCHH-HHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhH
Q 009700 233 PPAPF-DQVRPALAALQHLIFSSDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGN 310 (528)
Q Consensus 233 ~~~~~-~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~ 310 (528)
..+-. ....-...+|+.+.....-. .-.....++......++..... ++..++..=-..+..-...-+.-+..
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 22222 22222334455554443321 1122233333333333322222 12222221111333223333444555
Q ss_pred hhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCcHHHHHHHH----ccC-
Q 009700 311 IVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE---ANIIAPLVYLL----QHA- 381 (528)
Q Consensus 311 l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~~~- 381 (528)
+....+ ...+.+ ...++..+...+.++ +..|-+.|+....| + .+..++. ..++|.+...+ ...
T Consensus 278 iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~~~HW 349 (403)
T 3fga_B 278 ILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW 349 (403)
T ss_dssp HHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 554332 222111 123556677777777 77777777655422 1 1112221 12445544443 322
Q ss_pred ChHHHHHHHHHHHHhcCC
Q 009700 382 EFEVKKEASWAISNATSG 399 (528)
Q Consensus 382 ~~~v~~~a~~aL~nl~~~ 399 (528)
+..++..|..++.-+...
T Consensus 350 n~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 350 NKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 788888888888777553
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.93 E-value=2.2 Score=38.88 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHhHhhcCCcchhHHHh-ccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCcHHHH
Q 009700 298 TTVLVPALRTVGNIVTGDDTQTQCVI-DNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE--ANIIAPL 374 (528)
Q Consensus 298 ~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L 374 (528)
......|+..|..++.......+.+- +..++..|+ +.... .+.+++.|+.+|+.....+|..+..+.+ ..++..+
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 34567788888888876555444333 333333333 22333 6789999999999999999999988875 3455555
Q ss_pred HHHHcc-------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHH
Q 009700 375 VYLLQH-------AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK 441 (528)
Q Consensus 375 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~ 441 (528)
+.-|.. ....+++.-+.+|.-++... ..+ ....+..|..++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 554443 23456667777777777743 111 134566666666666 88999999999988885
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.79 E-value=7.2 Score=35.53 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHHHhhccCChHHHHHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 241 RPALAALQHLIFSS------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 241 ~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
+.-+..+..+++++ |.+....++-.|..++.........+- +..++..|+ +.....+.+++.|.++|+....
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 34444455555554 455678888888888765443333332 334455555 3344667799999999999999
Q ss_pred CCcchhHHHhc--cCChHHHHHHhcc----c--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccC--Ch
Q 009700 314 GDDTQTQCVID--NQGLPRLYQLLTQ----N--YKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHA--EF 383 (528)
Q Consensus 314 ~~~~~~~~~~~--~~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~ 383 (528)
+++.....+.+ ..++..+..-|.. . ....+++.-+.+|.-|...+... ....+..|.+++... ++
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCH
Confidence 99987766654 2444444443332 1 13467777888888887654211 134567788877777 89
Q ss_pred HHHHHHHHHHHHhc
Q 009700 384 EVKKEASWAISNAT 397 (528)
Q Consensus 384 ~v~~~a~~aL~nl~ 397 (528)
.+|..++..+..+.
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999998888776
No 136
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.08 E-value=10 Score=36.88 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=118.5
Q ss_pred HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCC
Q 009700 152 RVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRG 231 (528)
Q Consensus 152 ~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~ 231 (528)
+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 344445567889999999999999999999988876554455444321 2233445543333333345666777777666
Q ss_pred CCCCCh-hhhHHHHHHHHHHhcCCCHHH-HHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHh
Q 009700 232 KPPAPF-DQVRPALAALQHLIFSSDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVG 309 (528)
Q Consensus 232 ~~~~~~-~~~~~~l~~L~~ll~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~ 309 (528)
...+-. ....-...+|+.+.....-.. -.....++......++..... ++..|+..=-..+..-...-+.-|.
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~ele 309 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELE 309 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 532222 222233444555555443221 122223333333333322222 1222222211133332333444455
Q ss_pred HhhcCCc-chhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCcHHHHHHHHcc-----
Q 009700 310 NIVTGDD-TQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIE---ANIIAPLVYLLQH----- 380 (528)
Q Consensus 310 ~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~----- 380 (528)
.+....+ ...+.+ -..++..+...+.++ +..|-+.|+....| +... .++. ..++|.++..+..
T Consensus 310 eile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~s~~H 381 (449)
T 2npp_B 310 EILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRNSKTH 381 (449)
T ss_dssp HHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHHHHHh
Confidence 5554332 222212 123566677777877 77787777655432 2212 2221 1245666665522
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 009700 381 AEFEVKKEASWAISNATSG 399 (528)
Q Consensus 381 ~~~~v~~~a~~aL~nl~~~ 399 (528)
-+..|+..|..++.-+...
T Consensus 382 Wn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 382 WNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp SSTTHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 1567888888887766553
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=87.65 E-value=10 Score=36.88 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S 148 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~ 148 (528)
+..|+..+.|+|+..|...-..|+.+... -...+.++...+-..+.+++-......-..+.+.+++.|..|. +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56777788888888887777777766654 2333334433344555666543321233456778888888763 3
Q ss_pred hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+....+. ..|+-+..... .....+-..++..++..+|..... ++..|++.= ...+..-....+.-|..
T Consensus 242 ehk~fl~-----~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHHH-----HTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 3332222 22333443322 233345555666555555543332 222233222 11122111222233333
Q ss_pred hcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh--CcHHHHHHHhcC-----CChh
Q 009700 228 FCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLLH-----SSTT 299 (528)
Q Consensus 228 l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~-----~~~~ 299 (528)
+...-+...+ .....++..+..++.+.+-.|.+.|+....| +.....+.+. .++|.+...|.. -+..
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~ 385 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 385 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence 4433222222 2335677778888999998888887754432 1111111111 255666665532 3567
Q ss_pred hHHHHHHHHhHhhcCCcc
Q 009700 300 VLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 300 v~~~al~~L~~l~~~~~~ 317 (528)
++..+..++.-+...++.
T Consensus 386 V~~la~~vlk~l~e~d~~ 403 (449)
T 2npp_B 386 IHGLIYNALKLFMEMNQK 403 (449)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCHH
Confidence 888888888777665554
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.27 E-value=1.7 Score=35.21 Aligned_cols=74 Identities=9% Similarity=-0.093 Sum_probs=60.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .++.+...++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455667778889999999999999999999988887777777888888888863 56788888888887776644
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=85.85 E-value=2.9 Score=33.88 Aligned_cols=73 Identities=10% Similarity=-0.103 Sum_probs=58.7
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~ 442 (528)
++..|..-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .++.+...++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666778899999999999999999999888887777778889999988864 3678888888777665543
No 140
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.22 E-value=12 Score=35.73 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC-----h
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT-----S 148 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~ 148 (528)
+..|+..+.|+|+..|...-..|..+... -...+.++...+-..+.+++-....-.-..+.+.+++.+..|- .
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56677778888888877777777766554 2333444444344555555543321222345667777777654 2
Q ss_pred hhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSAS-DDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSN 227 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~ 227 (528)
+....+. ..|+-+...+. .....+-..++..+...+|..... ++..+++.= ...+..-...-+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 3322222 22223333322 233345555666666555543332 222233222 11222211222233333
Q ss_pred hcCCCCCCCh-hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHh---CcHHHHHHHh----c-CCCh
Q 009700 228 FCRGKPPAPF-DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----L-HSST 298 (528)
Q Consensus 228 l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL----~-~~~~ 298 (528)
+...-+...+ .....++..+..++.+.+-.|.+.|+....| + .+-.++.. .++|.+...| . |-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 4433222222 2335667778888889998888887655422 2 11112211 2444444443 2 3467
Q ss_pred hhHHHHHHHHhHhhcCCcc
Q 009700 299 TVLVPALRTVGNIVTGDDT 317 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~ 317 (528)
.++..+..++.-+...++.
T Consensus 352 ~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 7888888888877765554
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.15 E-value=1.8 Score=34.73 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=58.3
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-|.++++.++..|+..|-.++.+|.......+.+..++..|..++...++.+...++..+.......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 45566677888899999999999999998888777666666677777878777778889998988887766543
No 142
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.45 E-value=26 Score=33.30 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
..+...+.-+..++-..+. .++ .++++.++.+-.+. +..+|+..+.+|...+....+.. ..+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp---sLl-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP---TLL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG---GGG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH---HHH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3566666666666543322 122 36888899888887 89999999999988876433332 23677888889
Q ss_pred ccCChHHHHHHHHHHHHhc--------CCCC-HHHHHHHHH--CCChHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 009700 379 QHAEFEVKKEASWAISNAT--------SGGT-REQIQFLVS--QGCIKPLCDLLVCPDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 379 ~~~~~~v~~~a~~aL~nl~--------~~~~-~~~~~~l~~--~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~ 442 (528)
.+.++.|.+.++.+.+++- .+.+ .+..+..++ ..+-..++.++++.+..++..+++.+..++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 8889999998888777763 1111 111111111 12345667778888899999999999888753
No 143
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=83.73 E-value=0.63 Score=27.75 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=25.3
Q ss_pred HHhhccCC-CCChHHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 009700 11 VRKKSYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRR 50 (528)
Q Consensus 11 ~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~ 50 (528)
+|...||+ +...++.++ |.+ ..+.-|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~r-Rr~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSER-RRR-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHH-HHH-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHH-HHH-HHHHHHHHHHHHHHHhcC
Confidence 47788998 444444444 444 577788888887776663
No 144
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=82.84 E-value=5.4 Score=43.51 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=111.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc---chhhHHHHHHHHHhhh--hcCCCCC
Q 009700 160 VPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE---HSKLSMLRNATWTLSN--FCRGKPP 234 (528)
Q Consensus 160 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~~~~a~~~L~~--l~~~~~~ 234 (528)
+.-|+.+--+..++||..|-.+|..+...-+..+.. +++.+++.|.. +.+.+-.+-|+++|.. +... -.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~~ 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-LM 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-GG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-Hh
Confidence 456777777889999999999999998777766655 46777777754 3455556666666551 1100 12
Q ss_pred CChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------------C---------------hHHHHH
Q 009700 235 APFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDG--------------------T---------------NDKIQA 279 (528)
Q Consensus 235 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--------------------~---------------~~~~~~ 279 (528)
........+++.|++....+.++++..+-.+...+... + ......
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 23445567777777776666665554444332222210 0 000000
Q ss_pred HHH--hCcHHHHHHHh-cCCC--hhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHH
Q 009700 280 VIE--AGVCPRLVELL-LHSS--TTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 280 ~~~--~~~l~~L~~lL-~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl 354 (528)
..+ .++...++.+. .... +.....+++.+.++....+. .....++..+++.+.++ ++.+|+.|..++..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Confidence 111 12334444555 2345 78888888886666643332 22334566788888888 999999999888666
Q ss_pred h
Q 009700 355 T 355 (528)
Q Consensus 355 ~ 355 (528)
.
T Consensus 364 l 364 (997)
T 1vsy_5 364 C 364 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.84 E-value=3 Score=34.79 Aligned_cols=73 Identities=11% Similarity=-0.035 Sum_probs=57.4
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCC------CChHHHHHHHHHHHHHHHh
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKI 442 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~~l~~l~~i~~~ 442 (528)
++..|.+-+.++++.++..|+..|-.++.+|...+...+.+..++..|+.++.. .+..++..++..|......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345677778899999999999999999998877777777777888888888863 3577888888777765543
No 146
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=82.36 E-value=2.7 Score=33.52 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=52.2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcc-cHHHHHHHhcCCC--------HHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECD-GLDKIENLQSHDN--------NEIYE 483 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~l~~L~~~~~--------~~v~~ 483 (528)
+++.|..-|+..++.++-.+|.+|..++..+... |...+.+.- .+..+...+..++ ..|+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~ 119 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 119 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence 4667778888888888888999999888766432 444444332 2333333333333 67999
Q ss_pred HHHHHHHHhcCCCcc
Q 009700 484 KAVKLLERYWVEEED 498 (528)
Q Consensus 484 ~a~~ii~~~~~~~~~ 498 (528)
+|..+++-.|+++..
T Consensus 120 ~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 120 TAHETISAIFSEENG 134 (140)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999999986654
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=82.17 E-value=3.7 Score=33.87 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLER 491 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~ 491 (528)
++..|..-|.+.++.++..+|..|..+++.+... |...+-...+++.+..+... .++.|+.++..+|..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 3556666778889999999999999999876532 55556566677777777644 678999999999998
Q ss_pred hcCC
Q 009700 492 YWVE 495 (528)
Q Consensus 492 ~~~~ 495 (528)
|-..
T Consensus 123 W~~~ 126 (163)
T 1x5b_A 123 WSEE 126 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 148
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.92 E-value=2.6 Score=34.82 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=57.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|++.++.+++.|+..|-.+....+.....++....++..|+.++....++.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999888875444455666677888888888753448888888887777664
No 149
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.85 E-value=3.2 Score=33.24 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=54.3
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERY 492 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~ 492 (528)
++..|..-|.+.++.++..+|..|..+++.++.. |...+....+++.+..+....++.|+.+...++..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3556666677888888888999998888876532 555555556667777776667899999999999987
Q ss_pred cC
Q 009700 493 WV 494 (528)
Q Consensus 493 ~~ 494 (528)
..
T Consensus 113 ~~ 114 (140)
T 3ldz_A 113 TD 114 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=79.05 E-value=6 Score=32.92 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=56.5
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhc------CCCHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS------HDNNEIYEKAV 486 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~------~~~~~v~~~a~ 486 (528)
++..|..-+.+.++.++..+|..|..+++.+... |...+-...+++.|..+.. ..+..|++++.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 120 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI 120 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence 3556667778889999999999999999886542 5666666777788888764 34689999999
Q ss_pred HHHHHhcCC
Q 009700 487 KLLERYWVE 495 (528)
Q Consensus 487 ~ii~~~~~~ 495 (528)
.+|..|-..
T Consensus 121 ~li~~W~~~ 129 (171)
T 1juq_A 121 ELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.69 E-value=5.9 Score=32.05 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=57.1
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcC------CCHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSH------DNNEIYEKAV 486 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~------~~~~v~~~a~ 486 (528)
++..|..-|.+.++.++..+|..|..+++.++.. |...+-...+++.|..+... .++.|+.++.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 108 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI 108 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence 4556666778899999999999999999886532 66666677778888877642 4889999999
Q ss_pred HHHHHhcCC
Q 009700 487 KLLERYWVE 495 (528)
Q Consensus 487 ~ii~~~~~~ 495 (528)
.+|..|-..
T Consensus 109 ~li~~W~~~ 117 (148)
T 1mhq_A 109 EILFSWTVW 117 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 152
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.27 E-value=6.5 Score=31.82 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=56.2
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhc------CCCHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQS------HDNNEIYEKAV 486 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~------~~~~~v~~~a~ 486 (528)
++..|..-+.+.++.++..+|..|..+++.+... |...+-...+++.|..+.. ..++.|+.+..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 3556666677889999999999999988877543 6666667777888887764 36899999999
Q ss_pred HHHHHhcC
Q 009700 487 KLLERYWV 494 (528)
Q Consensus 487 ~ii~~~~~ 494 (528)
.+|..|-.
T Consensus 119 ~li~~W~~ 126 (149)
T 3g2s_A 119 ELLYSWTV 126 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.50 E-value=3.4 Score=36.28 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=56.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..|.+.|++.++.+++.|+..|-.+..+-+..-..++....++..|+.+++...++.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998888775444455666666777788887654447888888887777664
No 154
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=73.61 E-value=97 Score=32.79 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=67.1
Q ss_pred hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc--chhhHHHHHHHHHhh
Q 009700 149 EHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE--HSKLSMLRNATWTLS 226 (528)
Q Consensus 149 ~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~~~~a~~~L~ 226 (528)
+.++.+++. +.|.+...+.+.+..+...+..+|.++|.-.|.+++.++. +++..+...|.. -..+.-...++.+|.
T Consensus 331 ~~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 331 FCHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 344445432 4566666778889999999999999999877755555432 233333334422 123333445555555
Q ss_pred hhcCCCC--CCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 009700 227 NFCRGKP--PAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLS 270 (528)
Q Consensus 227 ~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~ 270 (528)
.+++.-. ..-...+..++..++.-+..+|+.-...++..+..++
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 5543211 1112233455555555566777766666666665553
No 155
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=70.95 E-value=9 Score=30.11 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=61.5
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhc
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEA 449 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 449 (528)
++|.|+..|++.+..+...++..|..+- .. +++.+...|.+.|..-.-. +|..+...-+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKYW---VIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHHH---HHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHHH---HHHHHHHcCCHH---
Confidence 5789999999999999888888777532 12 3555666777888765444 444444322211
Q ss_pred cCCcchhhHHHhhhcccHHHHHHHhcC-----CCHHHHHHHHHHHHHhcC
Q 009700 450 GSTTANVYSEMIDECDGLDKIENLQSH-----DNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 450 ~~~~~~~~~~~l~~~g~~~~l~~L~~~-----~~~~v~~~a~~ii~~~~~ 494 (528)
....+ ...|+.+..+ ...++.+.|..|+++||.
T Consensus 93 -------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 -------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp -------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred -------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 12222 3556777655 467899999999999986
No 156
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=68.45 E-value=64 Score=28.65 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=82.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
+++.++.+..+.+..++......+...+....... ...++.|..+|.+. ++.+.+.+..+.+++- +...+.
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY---~~~l~~ 124 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDN-SAQVIKRVIQACGSIY---KNGLQY 124 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH---HHHHHH
Confidence 45555555555566666666666666664333222 12455666666655 6667666666666553 111111
Q ss_pred HHHc---------------CcHHHHHHHHccCChHHHHHHHHHHHHhcC---CCCHH--------------------HHH
Q 009700 365 VIEA---------------NIIAPLVYLLQHAEFEVKKEASWAISNATS---GGTRE--------------------QIQ 406 (528)
Q Consensus 365 l~~~---------------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~---~~~~~--------------------~~~ 406 (528)
+... .+-..++.++.+++..+|..|...+..++. .++.. ...
T Consensus 125 i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~ 204 (257)
T 3gs3_A 125 LCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRRE 204 (257)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHH
Confidence 1111 123345556677788888888877776541 11000 011
Q ss_pred HHH--HCCChHHHHhhcCCC--ChHHHHHHHHHHHHHHHhhhh
Q 009700 407 FLV--SQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKIGEA 445 (528)
Q Consensus 407 ~l~--~~~~l~~L~~ll~~~--~~~~~~~~l~~l~~i~~~~~~ 445 (528)
.|. ..+.+..|+..+.++ +......++.+|..|++.-+.
T Consensus 205 ~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~ 247 (257)
T 3gs3_A 205 KLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPI 247 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcH
Confidence 221 235666777766654 334566778888888876554
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.62 E-value=5.2 Score=34.94 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=54.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 145 (528)
+++..|.+.|++.++.++..|+..|-.+...-+.....++....++..|+.++....+..++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999998888764333345555666778888887654447888877777666654
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=66.10 E-value=14 Score=35.26 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009700 74 IPSMVQGVLSENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPRFVEFLDRHDLPQLQFEAAWALTNIASGT 147 (528)
Q Consensus 74 l~~l~~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 147 (528)
+..|+..+.|+|+..|..--..|+.+... -...+..+...+-..+.+++-......-..+.+++++.+..|.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 55677777788887777766667666554 2344444444445556666644332233446677777777654
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.86 E-value=14 Score=32.26 Aligned_cols=72 Identities=11% Similarity=0.226 Sum_probs=52.9
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLER 491 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~ 491 (528)
++..|..-|.+.++.++..+|..|..+++.++.. |...+....+++.|..|. ...+++|++++..+|..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3556666777899999999999999998877542 444454555566666554 56778999999999988
Q ss_pred hcC
Q 009700 492 YWV 494 (528)
Q Consensus 492 ~~~ 494 (528)
+-.
T Consensus 116 W~~ 118 (226)
T 3zyq_A 116 WAH 118 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.42 E-value=17 Score=31.56 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.4
Q ss_pred ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009700 413 CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQ-SHDNNEIYEKAVKLLER 491 (528)
Q Consensus 413 ~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~-~~~~~~v~~~a~~ii~~ 491 (528)
++..|..-|.+.++.++..+|..|..+++.++.. |...+-...+++.|..+. ...+.+|++++..++..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3555666677889999999999999999886532 444444445566666554 46678999999999988
Q ss_pred hcCC
Q 009700 492 YWVE 495 (528)
Q Consensus 492 ~~~~ 495 (528)
+-..
T Consensus 113 W~~~ 116 (220)
T 1dvp_A 113 WAYA 116 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 161
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=63.37 E-value=36 Score=32.36 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCC
Q 009700 153 VVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGK 232 (528)
Q Consensus 153 ~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~ 232 (528)
..++...+..|+.++.++++.-|+....+|..+-+.-...|..+.. .+-..+.+.+.......-....+++++.+..+.
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 3344456788999999999999999999998886555555544332 123344555533333333445666666666654
No 162
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=61.55 E-value=92 Score=33.94 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhc----CCChhhHHHHHHHHhH---
Q 009700 238 DQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HSSTTVLVPALRTVGN--- 310 (528)
Q Consensus 238 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~al~~L~~--- 310 (528)
.....++.-|+.+-.+.-.+|+..|..++......-+..... +++.+++.|. ..+..-..-|+.+|..
T Consensus 129 ~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 129 KLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp SHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 334566777777777778999999999998887654433333 4555555554 3455556667766551
Q ss_pred --hhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCC------------------------------
Q 009700 311 --IVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGS------------------------------ 358 (528)
Q Consensus 311 --l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------------------------------ 358 (528)
.+..+-... ..+++.|+...... ++.+++.+-.+...+....
T Consensus 204 ~~~~~~d~~~~-----~~~~~ali~~~~~d-KpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~ 277 (997)
T 1vsy_5 204 HRKLMTDYKDI-----GRLIFLLIECCRVN-ELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEA 277 (997)
T ss_dssp HHHGGGCHHHH-----HHHHHHHHHTCSCS-SSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHH
T ss_pred hhHHhcChHHH-----HHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 111111111 12344444444444 6666665554444443210
Q ss_pred -----HHHHHHHHH--cCcHHHHHHHH-ccCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHHHHhhcCCCChHH
Q 009700 359 -----RSQIQAVIE--ANIIAPLVYLL-QHAE--FEVKKEASWAISNATSGGTREQIQFLVSQGCIKPLCDLLVCPDPRI 428 (528)
Q Consensus 359 -----~~~~~~l~~--~~~i~~L~~ll-~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~ 428 (528)
...++...+ .++...|+++. ...+ .+....++..|.++...-+.. ....++..+++.+.++.|.+
T Consensus 278 ~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 278 VKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHHH
Confidence 000000111 13344444555 2235 777777777766666422100 01124667778888899999
Q ss_pred HHHHHHHHHHHHHh
Q 009700 429 VTVCLEGLENILKI 442 (528)
Q Consensus 429 ~~~~l~~l~~i~~~ 442 (528)
+..++.++..++..
T Consensus 353 R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 353 IHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888875
No 163
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=58.37 E-value=90 Score=26.86 Aligned_cols=138 Identities=8% Similarity=-0.010 Sum_probs=80.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC-ChHHHHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHhHhhcCCcchhHHH
Q 009700 245 AALQHLIFSSDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLL-HSSTTVLVPALRTVGNIVTGDDTQTQCV 322 (528)
Q Consensus 245 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~ 322 (528)
..+..+..++--+.+..++..+...... .++ .++.+-.++. -+++.+.-..+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE---------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH---------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 4445556666667777777777655422 221 1222223333 356777766667777776544432
Q ss_pred hccCChHHHHHHhcccCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhcCCCC
Q 009700 323 IDNQGLPRLYQLLTQNYKKSIKKEACWTISNITA-GSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNATSGGT 401 (528)
Q Consensus 323 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~ 401 (528)
+.+.+.....++ +.-+|+.|+-.+..... ++++. +++.+-..+.+++.-|++.+.|+|..+.....
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence 234577788888 88888877664422211 22211 23344446777889999999999999998743
Q ss_pred HHHHHHH
Q 009700 402 REQIQFL 408 (528)
Q Consensus 402 ~~~~~~l 408 (528)
.....++
T Consensus 192 ~~v~~fl 198 (220)
T 2b6c_A 192 QWVEELM 198 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333443
No 164
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=57.11 E-value=29 Score=28.24 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred ChHHHHhhcC-CCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHH-HHHHh---cCCCHHHHHHHHH
Q 009700 413 CIKPLCDLLV-CPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK-IENLQ---SHDNNEIYEKAVK 487 (528)
Q Consensus 413 ~l~~L~~ll~-~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~L~---~~~~~~v~~~a~~ 487 (528)
++..|..-|. ..++.++..+|..|..+++.+... |...+-...+++. +..+. ..+...|++++..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~ 123 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLN 123 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 3455666666 478888889999999998877532 5555556666676 55554 2345799999999
Q ss_pred HHHHhcC
Q 009700 488 LLERYWV 494 (528)
Q Consensus 488 ii~~~~~ 494 (528)
+|..|-.
T Consensus 124 li~~W~~ 130 (157)
T 1elk_A 124 LIQSWAD 130 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=54.65 E-value=33 Score=32.99 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCchhHHHH-hcCcHHHHHHhhcCC-------CChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCPPIEEVI-RAGVVPRFVEFLDRH-------DLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+..+..++.+++.+.++.+.. .....++ .......+++.+... .+..++..++..+.|++.-....+
T Consensus 273 ~~~~an~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred CCChhHHHHHHHHHHHhcCCc--chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 456789999999999998763 3223333 222345556555321 125789999999999987211100
Q ss_pred HhcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhHHH
Q 009700 155 IEHGAVPKFVQLLG---------SASDDVREQAVWALGNVAGDSPSCRD 194 (528)
Q Consensus 155 ~~~g~i~~L~~lL~---------~~~~~i~~~a~~~L~nl~~~~~~~~~ 194 (528)
.+...++.++.++. ..+++....++-+||++....+..+.
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 01123445555554 24788889999999999865554443
No 166
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=53.74 E-value=26 Score=28.56 Aligned_cols=74 Identities=9% Similarity=-0.016 Sum_probs=53.1
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccCCchhHHHHhcCcHHH-HHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009700 72 ESIPSMVQGVL-SENSGLQLEATTQFRKLLSIERCPPIEEVIRAGVVPR-FVEFLDRH--DLPQLQFEAAWALTNIAS 145 (528)
Q Consensus 72 ~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-Lv~lL~~~--~~~~v~~~a~~~L~~l~~ 145 (528)
+++..+.+.|+ +.++.++..|+..|-.+....+..-..++....++.. |+.++... ....|+..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 46778888887 4788999999999988887754444556666677877 78887431 125788888777776654
No 167
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=53.19 E-value=43 Score=26.59 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=50.1
Q ss_pred cHHHHHHHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHC-CChHHHHhhcCCCC--------hHHHHHHHHHHHHHH
Q 009700 370 IIAPLVYLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQ-GCIKPLCDLLVCPD--------PRIVTVCLEGLENIL 440 (528)
Q Consensus 370 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~--------~~~~~~~l~~l~~i~ 440 (528)
+++.|.+-|...++.++..|+.+|-.++..|++.+...+.++ ..|..+..+--.+| ..|+..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 577888889999999999999999999999998888877654 23333333222222 236666666665554
Q ss_pred H
Q 009700 441 K 441 (528)
Q Consensus 441 ~ 441 (528)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 168
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=51.67 E-value=49 Score=27.99 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHHHHHHhc------CCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhh
Q 009700 242 PALAALQHLIF------SSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIV 312 (528)
Q Consensus 242 ~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~ 312 (528)
..+|.++.++. -.|.......+.....|..++.=..+..+.. ++|.++.++-. ....+|..|...++.++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-ILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 34555554443 2356666666666666666543222222222 66777776643 22269999999999998
Q ss_pred cCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHH
Q 009700 313 TGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLL 378 (528)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 378 (528)
........ -+...+...+.+.+.++. ......-|.+.|..+ .++.++.+ ++|.+-.+.
T Consensus 119 ~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l---G~~~vr~~----llP~l~~~~ 177 (196)
T 4atg_A 119 DTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL---SKNVVNTV----IREHAEEYK 177 (196)
T ss_dssp HHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CHHHHHTH----HHHHHHHHH
T ss_pred HHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh---HHHHHHHh----hhcCHHHHH
Confidence 65332221 122345556776665542 456677777777777 34544433 456554444
No 169
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=51.42 E-value=94 Score=27.01 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=52.4
Q ss_pred cHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 285 VCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 285 ~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
..+.+...+.+++.-++..|+-.+ +......... ..+..+...+.++ +.-|++...|+|..++..+++.+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 456677888888888887776543 2221111111 1233455666777 8999999999999999999998877
Q ss_pred HHHcC
Q 009700 365 VIEAN 369 (528)
Q Consensus 365 l~~~~ 369 (528)
+++..
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77543
No 170
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.98 E-value=63 Score=28.64 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhcc-------chhhHHHHHHHHHhhhhcCCC--CCCChhh
Q 009700 169 SASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLNE-------HSKLSMLRNATWTLSNFCRGK--PPAPFDQ 239 (528)
Q Consensus 169 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~l~~~~--~~~~~~~ 239 (528)
+.++..+-.++++++|+..+....+..+........++..+.. ..+..++..+...+.|++... .......
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4567889999999999987766345555443233444444311 235677778888888887542 1111222
Q ss_pred hHHHHHHHHHHhc-----CCCHHHHHHHHHHHHhhccC
Q 009700 240 VRPALAALQHLIF-----SSDEEVLTDACWALSYLSDG 272 (528)
Q Consensus 240 ~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~l~~~ 272 (528)
...++..+...+. ..|++....++-+++++...
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 2233333332211 13778888888888888753
No 171
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.81 E-value=21 Score=31.78 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCc-hhHHHHhcCcHHHHHHhhcC----C---CChHHHHHHHHHHHHHhcCChhhHHHH
Q 009700 83 SENSGLQLEATTQFRKLLSIERCP-PIEEVIRAGVVPRFVEFLDR----H---DLPQLQFEAAWALTNIASGTSEHTRVV 154 (528)
Q Consensus 83 s~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~g~i~~Lv~lL~~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~i 154 (528)
+..+..++.+++.+.|+.+.. . ..+.+........++..+.+ . .+..++..++..+.|++......+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~--~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred CCchhHHHHHHHHHHHcccCC--chHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 456789999999999998863 3 33333332233444444321 1 1367899999999999872111000
Q ss_pred HhcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCCh
Q 009700 155 IEHGAVPKFVQLLGS---------ASDDVREQAVWALGNVAGDSP 190 (528)
Q Consensus 155 ~~~g~i~~L~~lL~~---------~~~~i~~~a~~~L~nl~~~~~ 190 (528)
+......++.++.. .+++....++-+||++...++
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 11233445554442 367788888899999985444
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=44.76 E-value=1e+02 Score=29.61 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=64.5
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-------cchhhHHHHHHHHHhhhhcCCC--CCCC
Q 009700 166 LLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN-------EHSKLSMLRNATWTLSNFCRGK--PPAP 236 (528)
Q Consensus 166 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 236 (528)
.+.+..+..+-.++++++|+.......+..+........++..+. ...+..++..++..+.|++... ....
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~ 349 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 349 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 344567889999999999998766533444433222345555442 2235667788888888887542 1111
Q ss_pred hhhhHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhhccCCh
Q 009700 237 FDQVRPALAALQHLIF---------SSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 237 ~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
. ..++.+..++. ..|.+....++-++++|....+
T Consensus 350 ~----el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 L----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp T----THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred H----HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1 23334444443 2588899999999999986443
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.60 E-value=35 Score=32.09 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhHHHHHHhcCChHHHHHhhc-
Q 009700 133 QFEAAWALTNIASGTSEHTRVVIEHGAVPKFV-QLLGSASDDVREQAVWALGNVAGDSPSCRDLVLSHGALMPLLAQLN- 210 (528)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~Ll~ll~- 210 (528)
+.-++.+|.-++...+ . .+.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~-~------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLP-Y------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCS-C------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCC-h------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 4445555555554222 1 12233333 2344567889999999999998766533444432212233444331
Q ss_pred ------cchhhHHHHHHHHHhhhhcCCC--CCCChhhhHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhhccCC
Q 009700 211 ------EHSKLSMLRNATWTLSNFCRGK--PPAPFDQVRPALAALQHLIF---------SSDEEVLTDACWALSYLSDGT 273 (528)
Q Consensus 211 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~l~~l~~~~ 273 (528)
...+..++..+...+.|++... .... ...++.+..++. ..|++....++-++++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235667778888888887542 1111 123334444443 358889999999999998644
Q ss_pred h
Q 009700 274 N 274 (528)
Q Consensus 274 ~ 274 (528)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.24 E-value=45 Score=31.34 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=63.2
Q ss_pred hcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhc--------ccCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009700 293 LLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLT--------QNYKKSIKKEACWTISNITAGSRSQIQA 364 (528)
Q Consensus 293 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--------~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 364 (528)
+....+..+..++++++|+........+.+.+......+++.+. .. +..++..++.++-|++.......
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~-nkNl~IA~ATL~lNlAv~~~~~~-- 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQ-SQNLAIAVSTLIFNYSALVTKGN-- 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHH-HHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCC-CchHHHHHHHHHHHHHHHHhccc--
Confidence 33456778888999999998766533333322212333444331 12 45688888999999986211100
Q ss_pred HHHcCcHHHHHHHHc---------cCChHHHHHHHHHHHHhcCC
Q 009700 365 VIEANIIAPLVYLLQ---------HAEFEVKKEASWAISNATSG 399 (528)
Q Consensus 365 l~~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~nl~~~ 399 (528)
.+....+.+.+++. ..+.+....++.||++++..
T Consensus 285 -~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 285 -SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp -SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 01224455666665 35788999999999999863
No 175
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=41.63 E-value=4.2e+02 Score=29.74 Aligned_cols=329 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred cHHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 116 VVPRFVEFLDRHDLPQLQFEAAWALTNIASGTSEHTRVVIEHGAVPKFVQLLGSASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 116 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
+...+.+++.-.. ..+|...+..|=.|.. +.....++ ..|..+|.. ++.+...++.+|+++.-+.....+.
T Consensus 158 l~~ki~~vl~vap-~~lQ~diI~sLPeIl~--ds~H~~v~-----~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~v 228 (1323)
T 3s4w_B 158 LTAQMMQLISVAP-VNLQHDFITSLPEILG--DSQHANVG-----KELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKI 228 (1323)
T ss_dssp HHHHHHHHHHHSC-TTTHHHHHHTHHHHSC--GGGHHHHH-----HHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCc-HHHHHHHHHHhHHHhc--chhhHHHH-----HHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCC---HHHHHHHHHHHHhhccC
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSD---EEVLTDACWALSYLSDG 272 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~l~~l~~~ 272 (528)
...++..| .+-+.+..-.....|.+-+.. .....++..|-..|.-.. +.....+-..+.+-...
T Consensus 229 ------r~~vl~~L-~s~~~e~LP~lIkFLL~s~t~------~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~ 295 (1323)
T 3s4w_B 229 ------RQLVMGKL-SSVRLEDFPVIVKFLLHSVTD------TTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLA 295 (1323)
T ss_dssp ------HHHHHHST-TSSCTTHHHHHHHHHHHSCSS------TTHHHHHHHHHHHHHCC---------------------
T ss_pred ------HHHHHHHh-ccCChhhhHHHHHHHHHhCCH------hhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccc
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccCchhHHHHHHH
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACW 349 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~ 349 (528)
.....+.-...+....++..++. -+..+...-++.+.++....+ ...++.++=++-.......++.|-.
T Consensus 296 ~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ 367 (1323)
T 3s4w_B 296 SSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEK 367 (1323)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHH
Q ss_pred HHHHHhc---CCHHHHHHHHH------cCcHHHHH----HHHccCChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChHH
Q 009700 350 TISNITA---GSRSQIQAVIE------ANIIAPLV----YLLQHAEFEVKKEASWAISNATSGGTREQIQFLVSQGCIKP 416 (528)
Q Consensus 350 ~L~nl~~---~~~~~~~~l~~------~~~i~~L~----~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~ 416 (528)
++.+-.. -........+. ...++.++ .++.+.++.++.-+......+....+.-..+. ++..
T Consensus 368 ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqe-----Vl~~ 442 (1323)
T 3s4w_B 368 LLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQE-----VVGA 442 (1323)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHH-----HHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHH-----HHHH
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHH
Q 009700 417 LCDLLVCPDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKL 488 (528)
Q Consensus 417 L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~i 488 (528)
|+...-++...-+..+++.|..+....++. ..+++.++ .|.+|.+..|..++--.++..-..+
T Consensus 443 Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~-------l~~~a~~l--~giLD~l~~l~~~QiRklf~iL~~l 505 (1323)
T 3s4w_B 443 LVTHVCSGTEAEVDTALDVLLELIVLNASA-------MRLNAAFV--KGILDYLENMSPQQIRKIFCILSTL 505 (1323)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHCHHH-------HHHTHHHH--HGGGGGGGGCCHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCcHHHHHHHHHHHHHHhcCHHH-------HhHHHHHH--HHHHHhhcCCCHHHHHHHHHHHHHH
No 176
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=41.24 E-value=1.1e+02 Score=24.38 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHhCcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEAC 348 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 348 (528)
....+++.|++..+-..|.. ++..++...+.+|.++- -..+.+.++|+-..+.-+-.++. .+..|+.|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 34667888999999888875 56789999999999874 22456777776666665555542 567788777
Q ss_pred HHHHHHh
Q 009700 349 WTISNIT 355 (528)
Q Consensus 349 ~~L~nl~ 355 (528)
..+...+
T Consensus 129 ~Li~~Ws 135 (145)
T 2xpp_A 129 ALVQKWT 135 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 177
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=41.03 E-value=1.5e+02 Score=24.51 Aligned_cols=169 Identities=13% Similarity=0.168 Sum_probs=94.2
Q ss_pred hHHHhccCChHHHHHHhcc----cC-c--hhHHHHHHHHHHHHhcCCHHHHHHHH-HcCcHHHHHHHHccC--ChHHHHH
Q 009700 319 TQCVIDNQGLPRLYQLLTQ----NY-K--KSIKKEACWTISNITAGSRSQIQAVI-EANIIAPLVYLLQHA--EFEVKKE 388 (528)
Q Consensus 319 ~~~~~~~~~l~~L~~lL~~----~~-~--~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~ 388 (528)
...++..|++.-|+.+... .. + ..--+.+|.++....+.... .-.++ -.|.+..|+.-+.+. .|+-+..
T Consensus 99 iktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeeda-tvalieidggvelllkgmnskritpdnqld 177 (353)
T 4dvg_B 99 IKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEEDA-TVALIEIDGGVELLLKGMNSKRITPDNQLD 177 (353)
T ss_dssp HHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHHH-HHHHHTSTTHHHHHHHHHTCTTSCHHHHHH
T ss_pred HHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhcccc-eEEEEEecccHHHHhcccccCcCCCccccc
Confidence 3445555655555554421 10 1 12234577788877664333 33455 368899888888766 2443332
Q ss_pred HHHHH---HHhcCCCC-------HH-----HHHHHHHCC-----ChHHHHhhcCCCChHHHHHHHHHHHHHHHhhhhchh
Q 009700 389 ASWAI---SNATSGGT-------RE-----QIQFLVSQG-----CIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKE 448 (528)
Q Consensus 389 a~~aL---~nl~~~~~-------~~-----~~~~l~~~~-----~l~~L~~ll~~~~~~~~~~~l~~l~~i~~~~~~~~~ 448 (528)
.+.-+ +.+..+.+ -+ ....++..| ++..+.-.-++.........+-.+.+++...+-...
T Consensus 178 illeitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkflsffslfsksksekfkhaslvlinnlidqpelehr 257 (353)
T 4dvg_B 178 ILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSFFSLFSKSKSEKFKHASLVLINNLIDQPELEHR 257 (353)
T ss_dssp HHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHHHHHHHHHCCCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred eeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHHHHHHHhhhhhhhcccceeehhhccccchhhHhh
Confidence 22211 22222211 01 112334443 344444444677788888888888888876654443
Q ss_pred ccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 009700 449 AGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 449 ~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~~ 495 (528)
.+ ....+.+.|.+..|+.+.+.+.-.+- +....|..||+.
T Consensus 258 md------vrnsfieiglvnelenmkntewmkid-kikdsindffds 297 (353)
T 4dvg_B 258 MD------VRNSFIEIGLVNELENMKNTEWMKID-KIKDSINDFFDS 297 (353)
T ss_dssp HH------HHHHHHTTTHHHHHHHHHTSGGGGSH-HHHHHHHHHHHH
T ss_pred hh------hhhhheeeehhhHhhhccCccceehh-hHHhhHHHHHhh
Confidence 21 35556689999999999888765553 334556666664
No 178
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=38.42 E-value=92 Score=24.75 Aligned_cols=88 Identities=7% Similarity=-0.083 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHh
Q 009700 256 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLL 335 (528)
Q Consensus 256 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 335 (528)
+.|..-..||+.+... ... ++..+...+....+.-+.++++.+-.++..........+..++.+.+....
T Consensus 25 ~~I~~LT~~a~~~~~~-----a~~-----Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~ 94 (144)
T 1sz9_A 25 PIITTLTKLAEENISC-----AQY-----FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY 94 (144)
T ss_dssp HHHHHHHHHHHHTGGG-----HHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 4565666666665431 122 445566666667888899999999999876544344556667777777776
Q ss_pred cccCchhHHHHHHHHHHHH
Q 009700 336 TQNYKKSIKKEACWTISNI 354 (528)
Q Consensus 336 ~~~~~~~v~~~a~~~L~nl 354 (528)
... ++..|.....++.--
T Consensus 95 ~~~-d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 95 LLV-DNTTRTKLINMFKLW 112 (144)
T ss_dssp HTS-CHHHHHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHHHH
Confidence 665 666666665555544
No 179
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=37.91 E-value=52 Score=25.62 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhcCC
Q 009700 243 ALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVTGD 315 (528)
Q Consensus 243 ~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 315 (528)
.+...+.-|....+.+...+.|++.+.-.. .. ++..+...+....+.-+.+.++.+..++...
T Consensus 9 ~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a-----~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 9 SLDRKFQSVTNTMESIQGLSSWCIENKKHH-----ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHTGGGH-----HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHhHHHH-----HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 344444555566688999999999875321 22 3455556666667777888888888887543
No 180
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=33.59 E-value=2.8e+02 Score=25.39 Aligned_cols=184 Identities=9% Similarity=0.091 Sum_probs=103.3
Q ss_pred hhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHH-hc---cc----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 009700 299 TVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQL-LT---QN----YKKSIKKEACWTISNITAGSRSQIQAVIEANI 370 (528)
Q Consensus 299 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 370 (528)
.++...++.+.-.....++.. .+...+++.|++. |. .. .+++|-.-...++..+...-.+.+..+++ .+
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~--~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQ--MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AV 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH--HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HH
Confidence 356667777776665544421 2233566666653 21 11 13444444444444444333334444444 25
Q ss_pred HHHHHHHHcc---CChHHHHHHHHHHHHhcCCC-------CHHHHHHHHHCCChHHHHhhcCCCChHHHHHHHHHHHHHH
Q 009700 371 IAPLVYLLQH---AEFEVKKEASWAISNATSGG-------TREQIQFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 440 (528)
Q Consensus 371 i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~~l~~l~~i~ 440 (528)
+..-++++.. .-|+.|.+=...|..+...+ ++++.+. +++.++-..++.++++.+.+|.++..++
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 5566666664 34788877777776665543 3444444 4567777889999999999999999888
Q ss_pred HhhhhchhccCCcchhhHHHhhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 009700 441 KIGEADKEAGSTTANVYSEMIDECDGLDKIENLQSHDNNEIYEKAVKLLERYWV 494 (528)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~L~~~~~~~v~~~a~~ii~~~~~ 494 (528)
....+... ..+.|...+=-.=..+.+..+.++.+..-...-..++..+|.
T Consensus 196 ~n~~~~~~----~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 196 QNVAQEEA----AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHhcChH----HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 87653211 022232222111112444555666666666666777777774
No 181
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=33.47 E-value=2e+02 Score=23.57 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=55.9
Q ss_pred HHHHHHHhCcHHHHHHHhcC------CChhhHHHHHHHHhHhhcCCcchhHHHhccCChHHHHHHhcccC-chhHHHHHH
Q 009700 276 KIQAVIEAGVCPRLVELLLH------SSTTVLVPALRTVGNIVTGDDTQTQCVIDNQGLPRLYQLLTQNY-KKSIKKEAC 348 (528)
Q Consensus 276 ~~~~~~~~~~l~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~ 348 (528)
....+++.|++..+-..|.. ++..++...+.+|..+- -..+.+..+|+-..++-+-.++. .+..++-|-
T Consensus 68 L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~ 143 (170)
T 3nfq_A 68 LADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLAE 143 (170)
T ss_dssp GHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHHH
Confidence 45667888999999998875 45688999999999874 23456777776666655554542 577888888
Q ss_pred HHHHHHhc
Q 009700 349 WTISNITA 356 (528)
Q Consensus 349 ~~L~nl~~ 356 (528)
..+...+.
T Consensus 144 ~Li~~WsR 151 (170)
T 3nfq_A 144 KLIAEWTR 151 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 88887764
No 182
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=33.09 E-value=2.4e+02 Score=24.34 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=86.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHH-HHHHHhhCCChhHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIAS-GTSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAV-WALGNVAGDSPSCRD 194 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~-~~L~nl~~~~~~~~~ 194 (528)
..+-.+..++. -+.+..|+..+..... .+++ .++.+-.++.. ++..+.+..+ .+++.+....|.
T Consensus 64 ~~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~--- 130 (232)
T 3jxy_A 64 IIIRELWDLPE-REFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE--- 130 (232)
T ss_dssp HHHHHHHTSSB-HHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG---
T ss_pred HHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH---
Confidence 34455666665 7888888888765422 1222 23333444433 6677766542 455555433332
Q ss_pred HHHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCCh
Q 009700 195 LVLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTN 274 (528)
Q Consensus 195 ~~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~ 274 (528)
...+.+.... .+++.-+++.++..+.... ........++.+..++.+++.-|+..+.|+|..++...+
T Consensus 131 -----~~~~~l~~W~-~s~~~w~rR~ai~~~l~~~------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 131 -----LISAYIPKWI-ASDNIWLQRAAILFQLKYK------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp -----GGGGTHHHHH-HSSCHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred -----HHHHHHHHHh-cCCchHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 1234555666 6777778887765543221 111223566677778888899999999999999999888
Q ss_pred HHHHHHHHh
Q 009700 275 DKIQAVIEA 283 (528)
Q Consensus 275 ~~~~~~~~~ 283 (528)
+.+..+++.
T Consensus 199 ~~v~~fl~~ 207 (232)
T 3jxy_A 199 DVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 183
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=32.88 E-value=2.3e+02 Score=24.16 Aligned_cols=139 Identities=10% Similarity=-0.040 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhHHHH
Q 009700 118 PRFVEFLDRHDLPQLQFEAAWALTNIASG-TSEHTRVVIEHGAVPKFVQLLGS-ASDDVREQAVWALGNVAGDSPSCRDL 195 (528)
Q Consensus 118 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~ 195 (528)
..+..+..++. -+.+..|+.++...... +++. ++.+-.++.. ++..+.+..+.+++.++...+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH---
Confidence 34455666666 78899998888876532 2211 2222333433 66778777667777775443321
Q ss_pred HHhcCChHHHHHhhccchhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChH
Q 009700 196 VLSHGALMPLLAQLNEHSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSSDEEVLTDACWALSYLSDGTND 275 (528)
Q Consensus 196 ~~~~g~i~~Ll~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~ 275 (528)
..+.+.... .+++.-+++.++.++..... .......++.+..++.+++.-|+..+.|+|..++...++
T Consensus 125 -----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 125 -----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp -----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred -----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 223455566 77788888887765532211 122245566666688888899999999999999998887
Q ss_pred HHHHHH
Q 009700 276 KIQAVI 281 (528)
Q Consensus 276 ~~~~~~ 281 (528)
....++
T Consensus 193 ~v~~fl 198 (220)
T 2b6c_A 193 WVEELM 198 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 184
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=31.43 E-value=54 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHhhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCC
Q 009700 458 SEMIDECDGLDKIENLQSH-DNNEIYEKAVKLLERYWVE 495 (528)
Q Consensus 458 ~~~l~~~g~~~~l~~L~~~-~~~~v~~~a~~ii~~~~~~ 495 (528)
.+.|.+.+.=..+..|..| +|++|...|..++..|-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6778888888999999875 9999999999999998653
No 185
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=31.34 E-value=11 Score=34.87 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=27.6
Q ss_pred CchHHhhccCCCCChHHHHHhHHHHHHHHHHHhhhHHHHhhhhhc
Q 009700 8 RTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREG 52 (528)
Q Consensus 8 ~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~ 52 (528)
...+|...||+...+.+.. +|++..-+..|++|.+.....|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~-~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS-ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC-HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4458999999843443433 3444566777888999999988864
No 186
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=30.22 E-value=1.5e+02 Score=22.86 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHhHhhc
Q 009700 244 LAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSTTVLVPALRTVGNIVT 313 (528)
Q Consensus 244 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~~l~~ 313 (528)
+...+.-|....+.+...+.|++.+.-.. .. ++..+...+....+.-+.+.++.+..++.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~~a-----~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRKHA-----GP-----IVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGGGH-----HH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34444455566788999999999875321 22 34445555665566678888888888864
No 187
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.86 E-value=66 Score=25.90 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=51.1
Q ss_pred cHHHHHHHHcc-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHCCChH-HHHhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009700 370 IIAPLVYLLQH-AEFEVKKEASWAISNATSGGTREQIQFLVSQGCIK-PLCDLLVC---PDPRIVTVCLEGLENILKIG 443 (528)
Q Consensus 370 ~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~ll~~---~~~~~~~~~l~~l~~i~~~~ 443 (528)
++..|..-+.. .++.++..|+..|-.++.+|...+...+.+..++. .|..++.. ....+...++..+.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 34555666664 57888888999999999988877777666555665 36666653 23468888888887766543
No 188
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=26.52 E-value=2.4e+02 Score=22.28 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=48.7
Q ss_pred ChHHHHHHhcccCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHHccCChHHHHHHHHHHHHhc
Q 009700 327 GLPRLYQLLTQNYKKSIKKEACWTISNITAGSRSQIQAVIEANIIAPLVYLLQHAEFEVKKEASWAISNAT 397 (528)
Q Consensus 327 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~ 397 (528)
++..+...+... .+.-+-.+++++-.++..........+..++.+.+.+.....+..+|......+.-.-
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 344566666666 7778888888888888632223345667778888888887778888877777665544
No 189
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=25.20 E-value=5.2e+02 Score=27.23 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCChHHHHHHHHhCcHHHHHHHhcC---CChhhHHHHHHHHhHhhcC---
Q 009700 241 RPALAALQHLIFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---SSTTVLVPALRTVGNIVTG--- 314 (528)
Q Consensus 241 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~~l~~~--- 314 (528)
.-+.|.+...+.+.+..+...+..++.+|+.-.+.+.+.++. ++++.+..-|.. .++.-...++.++..++..
T Consensus 338 ~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 338 EIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 555666667778899999999999999999866533333333 477778888877 5555566778888777631
Q ss_pred CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHh
Q 009700 315 DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNIT 355 (528)
Q Consensus 315 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~ 355 (528)
.+.....+. .++..++.-+... |+.--..+...+..++
T Consensus 417 ~~~yr~hl~--~lL~l~LpgID~N-D~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 417 DKLYRVHIT--NVLSMLVSKLDMN-DTNLTSNLINGIVSIA 454 (799)
T ss_dssp STTGGGHHH--HHHHHHHHTCCSS-CHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH--HHHHHHhccCCcc-cHHHHHHHHHHHHHHH
Confidence 111121111 1233333334444 5544445555665554
No 190
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.59 E-value=3.6e+02 Score=22.62 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=68.3
Q ss_pred ChHHHHHhhcc-----chhhHHHHHHHHHhhhhcCCCCCCChhhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhccC
Q 009700 201 ALMPLLAQLNE-----HSKLSMLRNATWTLSNFCRGKPPAPFDQVRPALAALQHLIFSS---DEEVLTDACWALSYLSDG 272 (528)
Q Consensus 201 ~i~~Ll~ll~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~ 272 (528)
.+|.++..+.+ -.+.......+.+...|..++.-........++|.++.++-.. ...++..|...++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 35555555522 1256677778888888888865444556678889888876432 237999999999999864
Q ss_pred ChHHHHHHHHhCcHHHHHHHhcCCC--hhhHHHHHHHHhHhhc
Q 009700 273 TNDKIQAVIEAGVCPRLVELLLHSS--TTVLVPALRTVGNIVT 313 (528)
Q Consensus 273 ~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~~l~~ 313 (528)
...... -+...+...+.+.+.+++ .....-|+..|..+..
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 221111 112235556666665543 3445556666665543
No 191
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.92 E-value=1.6e+02 Score=23.62 Aligned_cols=73 Identities=8% Similarity=0.120 Sum_probs=46.5
Q ss_pred hHHHHhhcCC-CChHHHHHHHHHHHHHHHhhhhchhccCCcchhhHHHhhhcccHHH-HHHHhc---CCCHHHHHHHHHH
Q 009700 414 IKPLCDLLVC-PDPRIVTVCLEGLENILKIGEADKEAGSTTANVYSEMIDECDGLDK-IENLQS---HDNNEIYEKAVKL 488 (528)
Q Consensus 414 l~~L~~ll~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~L~~---~~~~~v~~~a~~i 488 (528)
+..|..-+.. .++.++..+|..|..+++.++.. |...+....+++. |..+.. +...+|+.++..+
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~l 124 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNF 124 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 4455555553 46777777888888888876543 4444444444432 444432 3456899999999
Q ss_pred HHHhcCCC
Q 009700 489 LERYWVEE 496 (528)
Q Consensus 489 i~~~~~~~ 496 (528)
|..|-..-
T Consensus 125 i~~Wa~~F 132 (152)
T 3rru_A 125 IKTWSQGF 132 (152)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99986543
No 192
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=20.90 E-value=86 Score=21.27 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcCCCcc
Q 009700 479 NEIYEKAVKLLERYWVEEED 498 (528)
Q Consensus 479 ~~v~~~a~~ii~~~~~~~~~ 498 (528)
++|++.+..-++.||..+++
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 46788999999999987544
No 193
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=20.05 E-value=1.8e+02 Score=25.16 Aligned_cols=76 Identities=7% Similarity=0.052 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCChhhHHHHHH----HHhHhhcC--CcchhHHHhccCChHHHHHHhcccCchhHHHHHHHHHHHHhcCCH
Q 009700 286 CPRLVELLLHSSTTVLVPALR----TVGNIVTG--DDTQTQCVIDNQGLPRLYQLLTQNYKKSIKKEACWTISNITAGSR 359 (528)
Q Consensus 286 l~~L~~lL~~~~~~v~~~al~----~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 359 (528)
.+.+...+.+++.-.+..++. .++.+... .+.... .++..+...+.+. +.-+++.+.|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 455677788888877877777 44442211 111121 2455666677888 89999999999999988777
Q ss_pred HHHHHHHH
Q 009700 360 SQIQAVIE 367 (528)
Q Consensus 360 ~~~~~l~~ 367 (528)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 76655543
Done!