BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009701
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXQ|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra
pdb|1XXR|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|B Chain B, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|C Chain C, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
pdb|1XXR|D Chain D, Structure Of A Mannose-Specific Jacalin-Related Lectin
From Morus Nigra In Complex With Mannose
Length = 161
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 11 IAVGPWGGQNGTRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGT-K 69
I VG WGG G WDDG +T +R++ ++HG I + + YD G H GN + K
Sbjct: 17 IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFK 76
Query: 70 FDQVKLDDPDEFLTSVHGHYG--ATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPM 127
++ LD P+EFL SV G+ G A G +RSLTF++N+KTYGP+G E+GT FS P+
Sbjct: 77 TVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGKEEGTPFSLPI 136
Query: 128 TGGKIVGFHGRCGWYLDAIGIYL 150
G IVGF GR G+ +DAIG +L
Sbjct: 137 ENGLIVGFKGRSGFVVDAIGFHL 159
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 264 ITYGPWGGTGGSMFNDGTYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKH-GGTGGFR 322
I G WGG GG+ ++DG+YTGIR+INLS I + V YD +G+ G H G F+
Sbjct: 17 IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFK 76
Query: 323 HDRVIFDYPYEILTQITGTYGPV--MYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKI 380
++ D+P E L ++G G + + G ++IRSLTF T K +GP+G+E+G FS I
Sbjct: 77 TVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGKEEGTPFSLPI 136
Query: 381 GEGKIVGFHGRDGLFLDAIGVYVKV 405
G IVGF GR G +DAIG ++ +
Sbjct: 137 ENGLIVGFKGRSGFVVDAIGFHLSL 161
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKHGGN 514
++GI++I ++ +A+ + + YD NGQ H GN
Sbjct: 35 YTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGN 71
>pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
pdb|3P8S|B Chain B, Crystal Structure Of Single Chain Recombinant Jacalin
Showing Highly Dynamic Posttranslational Excission Loop
That Reduces Binding Affinity
Length = 157
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 86/149 (57%), Gaps = 12/149 (8%)
Query: 11 IAVGPWGGQ-----NGTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHG 63
+ VGPWG + NG +DDG T +R++ +++ I +Q+ YD G + H
Sbjct: 10 VIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGSPYVGQNHK 69
Query: 64 GNGGTKFDQVK--LDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGT 121
+ T F VK LD P E++ V G+ G N G V VRSLTF++N+KTYGP+GV GT
Sbjct: 70 -SFITGFTPVKISLDFPSEYIMEVSGYTG--NVSGYVVVRSLTFKTNKKTYGPYGVTSGT 126
Query: 122 YFSFPMTGGKIVGFHGRCGWYLDAIGIYL 150
F+ P+ G IVGF G G++LD +YL
Sbjct: 127 PFNLPIENGLIVGFKGSIGYWLDCFSMYL 155
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 263 AITYGPWGG-----TGGSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKH 315
+ GPWG + G F+DG +TGIR+INLS N I ++V YD +G G H
Sbjct: 9 TVIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGSPYVGQNH 68
Query: 316 GG-TGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQ 374
GF ++ D+P E + +++G G V G ++RSLTF T K +GP+G G
Sbjct: 69 KSFITGFTPVKISLDFPSEYIMEVSGYTGNVS--GYVVVRSLTFKTNKKTYGPYGVTSGT 126
Query: 375 SFSNKIGEGKIVGFHGRDGLFLDAIGVYVKV 405
F+ I G IVGF G G +LD +Y+ +
Sbjct: 127 PFNLPIENGLIVGFKGSIGYWLDCFSMYLSL 157
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 22 TRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEF 81
WD+G +T +RQ+ +++ I S + YD G KH K +++L PDEF
Sbjct: 16 NGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEF 75
Query: 82 LTSVHGHYGATNDRG--SVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGR 138
L SV G+ G + + VRSLTF++N+ +T+GP+G E+GTYF+ P+ G IVGF GR
Sbjct: 76 LESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGR 135
Query: 139 CGWYLDAIGIYL 150
G LDAIGI++
Sbjct: 136 TGDLLDAIGIHM 147
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 278 NDGTYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQ 337
++G+YTGIRQI LS I S V YD +G G KH +++ ++ +P E L
Sbjct: 19 DEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLES 78
Query: 338 ITGTYGPVMYMG--PNIIRSLTFHTTKGK-HGPFGEEQGQSFSNKIGEGKIVGFHGRDGL 394
++G GP + ++RSLTF T KG+ GP+G+E+G F+ I G IVGF GR G
Sbjct: 79 VSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGD 138
Query: 395 FLDAIGVYVKV 405
LDAIG+++ +
Sbjct: 139 LLDAIGIHMSL 149
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKH 511
++GI+QI ++ EA+ S + YD NG KH
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKH 56
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 22 TRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEF 81
WD+G +T +RQ+ +++ I S + YD G KH K +++L PDEF
Sbjct: 16 NGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEF 75
Query: 82 LTSVHGHYGATNDRG--SVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGR 138
L SV G+ G + + VRSLTF++N+ +T+GP+G E+GTYF+ P+ G IVGF GR
Sbjct: 76 LESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGR 135
Query: 139 CGWYLDAIGIYL 150
G LDAIGI++
Sbjct: 136 TGDLLDAIGIHM 147
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 278 NDGTYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQ 337
++G+YTGIRQI LS I S V YD +G G KH +++ ++ +P E L
Sbjct: 19 DEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLES 78
Query: 338 ITGTYGPVMYMG--PNIIRSLTFHTTKGK-HGPFGEEQGQSFSNKIGEGKIVGFHGRDGL 394
++G GP + ++RSLTF T KG+ GP+G+E+G F+ I G IVGF GR G
Sbjct: 79 VSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGD 138
Query: 395 FLDAIGVYVKV 405
LDAIG+++ +
Sbjct: 139 LLDAIGIHMSL 149
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKH 511
++GI+QI ++ EA+ S + YD NG KH
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKH 56
>pdb|4AKD|A Chain A, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|B Chain B, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|C Chain C, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
pdb|4AKD|D Chain D, High Resolution Structure Of Mannose Binding Lectin From
Champedak (cmb)
Length = 150
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 3/128 (2%)
Query: 281 TYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITG 340
+YTGIRQI LS I S V YD +G++ G KH +++ ++ +P E L ++G
Sbjct: 23 SYTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKNVKIELQFPEEFLVSVSG 82
Query: 341 TYGPVMYMG-PN-IIRSLTFHTTKGK-HGPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLD 397
GP + P ++RSLTF T KG+ GP+G+E+G F+ I G IVGF GR G LD
Sbjct: 83 YTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLD 142
Query: 398 AIGVYVKV 405
AIGV++ +
Sbjct: 143 AIGVHMAL 150
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 29 HTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGH 88
+T +RQ+ +++ I S + YD G S KH K +++L P+EFL SV G+
Sbjct: 24 YTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKNVKIELQFPEEFLVSVSGY 83
Query: 89 YGATNDRG--SVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDA 145
G + + VRSLTF++N+ +T+GP+G E+GTYF+ P+ G IVGF GR G LDA
Sbjct: 84 TGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDA 143
Query: 146 IGIYL 150
IG+++
Sbjct: 144 IGVHM 148
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKH 511
++GI+QI ++ EA+ S + YD NG+ KH
Sbjct: 24 YTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKH 57
>pdb|4AK4|A Chain A, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|C Chain C, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|E Chain E, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|G Chain G, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|I Chain I, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|K Chain K, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|M Chain M, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
pdb|4AK4|O Chain O, High Resolution Structure Of Galactose Binding Lectin From
Champedak (cgb)
Length = 133
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Query: 21 GTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVK--LD 76
G +DDGV T +R++ +++ I Q+ YD G E H + T F VK LD
Sbjct: 1 GKAFDDGVFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHK-SFITGFTPVKISLD 59
Query: 77 DPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFH 136
P E++ V G+ G + G V VRSLTF++N+KTYGP+GV GT FS P+ G IVGF
Sbjct: 60 FPSEYIMEVSGYTGKVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFK 117
Query: 137 GRCGWYLDAIGIYL 150
G G++LD +YL
Sbjct: 118 GSIGYWLDYFSMYL 131
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKHGG-TGGFRHDRVIFDY 330
G F+DG +TGIR+INLS N I +V YD +G G H GF ++ D+
Sbjct: 1 GKAFDDGVFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E + +++G G V G ++RSLTF T K +GP+G G FS I G IVGF G
Sbjct: 61 PSEYIMEVSGYTGKVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G +LD +Y+ +
Sbjct: 119 SIGYWLDYFSMYLSL 133
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 29 HTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGH 88
+T +RQ+ +++ I S + YD G KH K +++L PDEFL SV G+
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGY 82
Query: 89 YGATNDRG--SVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDA 145
G + + VRSLTF++N+ +T+GP+G E+GTYF+ P+ G IVGF GR G LDA
Sbjct: 83 TGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDA 142
Query: 146 IGIYL 150
IGI++
Sbjct: 143 IGIHM 147
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 281 TYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITG 340
+YTGIRQI LS I S V YD +G G KH +++ ++ +P E L ++G
Sbjct: 22 SYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSG 81
Query: 341 TYGPVMYMG-PN-IIRSLTFHTTKGK-HGPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLD 397
GP + P ++RSLTF T KG+ GP+G+E+G F+ I G IVGF GR G LD
Sbjct: 82 YTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLD 141
Query: 398 AIGVYVKV 405
AIG+++ +
Sbjct: 142 AIGIHMSL 149
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKH 511
++GI+QI ++ EA+ S + YD NG KH
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKH 56
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 29 HTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGH 88
+T +RQ+ +++ I S + YD G KH K +++L PDEFL SV G+
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGY 82
Query: 89 YGATNDRG--SVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDA 145
G + + VRSLTF++N+ +T+GP+G E+GTYF+ P+ G IVGF GR G LDA
Sbjct: 83 TGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDA 142
Query: 146 IGIYL 150
IGI++
Sbjct: 143 IGIHM 147
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 281 TYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITG 340
+YTGIRQI LS I S V YD +G G KH +++ ++ +P E L ++G
Sbjct: 22 SYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSG 81
Query: 341 TYGPVMYMG-PN-IIRSLTFHTTKGK-HGPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLD 397
GP + P ++RSLTF T KG+ GP+G+E+G F+ I G IVGF GR G LD
Sbjct: 82 YTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLD 141
Query: 398 AIGVYVKV 405
AIG+++ +
Sbjct: 142 AIGIHMSL 149
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 478 FSGIKQIFVTRAEAVHSIQIEYDRNGQFIWSVKH 511
++GI+QI ++ EA+ S + YD NG KH
Sbjct: 23 YTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKH 56
>pdb|4AKB|A Chain A, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|C Chain C, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|E Chain E, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKB|G Chain G, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Galactose
pdb|4AKC|A Chain A, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|C Chain C, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|E Chain E, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
pdb|4AKC|G Chain G, Structure Of Galactose Binding Lectin From Champedak (cgb)
With Gal(beta)1,3-galnac
Length = 133
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 21 GTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVK--LD 76
G +DDG T +R++ +++ I Q+ YD G E H + T F VK LD
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHK-SFITGFTPVKISLD 59
Query: 77 DPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFH 136
P E++ V G+ G + G V VRSLTF++N+KTYGP+GV GT FS P+ G IVGF
Sbjct: 60 FPSEYIMEVSGYTGKVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFK 117
Query: 137 GRCGWYLDAIGIYL 150
G G++LD +YL
Sbjct: 118 GSIGYWLDYFSMYL 131
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKHGG-TGGFRHDRVIFDY 330
G F+DG +TGIR+INLS N I +V YD +G G H GF ++ D+
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E + +++G G V G ++RSLTF T K +GP+G G FS I G IVGF G
Sbjct: 61 PSEYIMEVSGYTGKVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G +LD +Y+ +
Sbjct: 119 SIGYWLDYFSMYLSL 133
>pdb|1TOQ|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TOQ|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-a-d-galactose
pdb|1TP8|A Chain A, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|C Chain C, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|E Chain E, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
pdb|1TP8|G Chain G, Crystal Structure Of A Galactose Specific Lectin From
Artocarpus Hirsuta In Complex With Methyl-A-D-Galactose
Length = 133
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 5/133 (3%)
Query: 21 GTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHGGN-GGTKFDQVKLDD 77
G +DDG T +R++ +++ I Q+ YD G + H G ++ LD
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDF 60
Query: 78 PDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFHG 137
P E++T V G+ G N G V VRSLTF++N+KTYGP+GV GT F+ P+ G IVGF G
Sbjct: 61 PSEYITEVSGYTG--NVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKG 118
Query: 138 RCGWYLDAIGIYL 150
G+++D +YL
Sbjct: 119 SIGYWMDYFSMYL 131
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKHGG-TGGFRHDRVIFDY 330
G F+DG +TGIR+INLS N I +V YD +G G H GF ++ D+
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E +T+++G G V G ++RSLTF T K +GP+G G F+ I G IVGF G
Sbjct: 61 PSEYITEVSGYTGNVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G ++D +Y+ +
Sbjct: 119 SIGYWMDYFSMYLSL 133
>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
Chloro-3-Indolyl-A-D-Mannose
Length = 447
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 11 IAVGPWGGQNGTRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGG----NG 66
I++GPWGG G W + + Q++I G+ I S+ + D G S GG +
Sbjct: 301 ISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSVAFK-DTSG--LDSATFGGVNPKDT 357
Query: 67 GTKFDQVKLDDPDEFLTSVHGHYGATNDRGSVF--VRSLTFQSNRKTYGPFGVEQGTYFS 124
G K + V ++ P E+LTS+ G YG + VF + SL+F +N TYGPFG T FS
Sbjct: 358 GEK-NTVSINWPSEYLTSISGTYGQYKFK-DVFTTITSLSFTTNLATYGPFGKASATSFS 415
Query: 125 FPMTGGKIVGFHGRCGWYLDAIGIYL 150
P+ +VGFHGR G YLDAIGI++
Sbjct: 416 IPIHNNMVVGFHGRAGDYLDAIGIFV 441
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 6 SDKKPIAVGPWGGQNGTRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKG---GSCWSEKH 62
S K I+VGPWGG G W + + ++VI I SI + D G G+ +
Sbjct: 1 SLKGMISVGPWGGSGGNYWSFKANHAITEIVIHVKDNIKSISFK-DASGDISGTFGGKDP 59
Query: 63 GGNGGTKFDQVKLDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFG-VEQGT 121
N ++K+ P E+L S+ G YG N G + +RSL+F +N TYGPFG G
Sbjct: 60 RENEKGDEKKIKIHWPTEYLKSISGSYGDYN--GVLVIRSLSFITNLTTYGPFGSTSGGE 117
Query: 122 YFSFPMTGGKIVGFHGRCGWYLDAIGIYL 150
FS P+ +VGFHGR G+YLDA+GI++
Sbjct: 118 SFSIPIADSVVVGFHGRAGYYLDALGIFV 146
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Query: 11 IAVGPWGGQNGT-RWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTK 69
I+ GPWGG G ++ V + ++ ++I A I+SI + + G C+ K GG
Sbjct: 154 ISFGPWGGPAGDDAFNFKVGSWIKDIIIYADAAINSIA--FKDANGHCYG-KFGGQDPND 210
Query: 70 F---DQVKLDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFP 126
+V++D E L S+ G YG N +G V SL+F +N +GPFG+ GT FS P
Sbjct: 211 IGVEKKVEIDGNLEHLKSISGTYG--NYKGFEVVTSLSFITNVTKHGPFGIASGTSFSIP 268
Query: 127 MTGGKIVGFHGRCGWYLDAIGIYL 150
+ G + GFHG+ G+YLD+IGIY+
Sbjct: 269 IEGSLVTGFHGKSGYYLDSIGIYV 292
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 263 AITYGPWGGTGGSMFNDGTYTGIRQINL--SRNVGIVSMKVCYDQDGKAVWGSKHGGTGG 320
+I+ GPWGG+GG ++ GI QI + N+ V+ K D G TG
Sbjct: 300 SISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSVAFKDTSGLDSATFGGVNPKDTG- 358
Query: 321 FRHDRVIFDYPYEILTQITGTYGPVMYMGP-NIIRSLTFHTTKGKHGPFGEEQGQSFSNK 379
+ V ++P E LT I+GTYG + I SL+F T +GPFG+ SFS
Sbjct: 359 -EKNTVSINWPSEYLTSISGTYGQYKFKDVFTTITSLSFTTNLATYGPFGKASATSFSIP 417
Query: 380 IGEGKIVGFHGRDGLFLDAIGVYVK 404
I +VGFHGR G +LDAIG++VK
Sbjct: 418 IHNNMVVGFHGRAGDYLDAIGIFVK 442
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 264 ITYGPWGGTGGSMFNDGTYTGIRQI--NLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGF 321
I+ GPWGG+GG+ ++ I +I ++ N+ +S K G
Sbjct: 6 ISVGPWGGSGGNYWSFKANHAITEIVIHVKDNIKSISFKDASGDISGTFGGKDPRENEKG 65
Query: 322 RHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQG-QSFSNKI 380
++ +P E L I+G+YG Y G +IRSL+F T +GPFG G +SFS I
Sbjct: 66 DEKKIKIHWPTEYLKSISGSYGD--YNGVLVIRSLSFITNLTTYGPFGSTSGGESFSIPI 123
Query: 381 GEGKIVGFHGRDGLFLDAIGVYVK 404
+ +VGFHGR G +LDA+G++V+
Sbjct: 124 ADSVVVGFHGRAGYYLDALGIFVQ 147
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 264 ITYGPWGGTGGS-MFNDGTYTGIRQINLSRNVGIVSMKV------CYDQDGKAVWGSKHG 316
I++GPWGG G FN + I+ I + + I S+ CY + G G
Sbjct: 154 ISFGPWGGPAGDDAFNFKVGSWIKDIIIYADAAINSIAFKDANGHCYGKFG----GQDPN 209
Query: 317 GTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSF 376
G +V D E L I+GTYG Y G ++ SL+F T KHGPFG G SF
Sbjct: 210 DIG--VEKKVEIDGNLEHLKSISGTYG--NYKGFEVVTSLSFITNVTKHGPFGIASGTSF 265
Query: 377 SNKIGEGKIVGFHGRDGLFLDAIGVYVK 404
S I + GFHG+ G +LD+IG+YVK
Sbjct: 266 SIPIEGSLVTGFHGKSGYYLDSIGIYVK 293
>pdb|1JAC|A Chain A, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|C Chain C, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|E Chain E, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1JAC|G Chain G, A Novel Mode Of Carbohydrate Recognition In Jacalin, A
Moraceae Plant Lectin With A Beta-Prism
pdb|1KU8|A Chain A, Crystal Structure Of Jacalin
pdb|1KU8|C Chain C, Crystal Structure Of Jacalin
pdb|1KU8|E Chain E, Crystal Structure Of Jacalin
pdb|1KU8|G Chain G, Crystal Structure Of Jacalin
pdb|1KUJ|A Chain A, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|C Chain C, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|E Chain E, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1KUJ|G Chain G, Crystal Structure Of Jacalin Complexed With 1-o-methyl-
Alpha-d-mannose
pdb|1M26|A Chain A, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|C Chain C, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|E Chain E, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1M26|G Chain G, Crystal Structure Of Jacalin-T-Antigen Complex
pdb|1UGW|C Chain C, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|E Chain E, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGY|C Chain C, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UGY|E Chain E, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UH0|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|C Chain C, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|E Chain E, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH0|G Chain G, Crystal Structure Of Jacalin- Me-Alpha-Galnac Complex
pdb|1UH1|A Chain A, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|C Chain C, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|E Chain E, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1UH1|G Chain G, Crystal Structure Of Jacalin-
Galnac-Beta(1-3)-Gal-Alpha-O-Me Complex
pdb|1PXD|A Chain A, Crystal Structure Of The Complex Of Jacalin With Meso-
Tetrasulphonatophenylporphyrin.
pdb|1WS4|C Chain C, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|E Chain E, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|C Chain C, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|E Chain E, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 21 GTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVK--LD 76
G +DDG T +R++ +++ I Q+ YD G + H + T F VK LD
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHK-SFITGFTPVKISLD 59
Query: 77 DPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFH 136
P E++ V G+ G N G V VRSLTF++N+KTYGP+GV GT F+ P+ G IVGF
Sbjct: 60 FPSEYIMEVSGYTG--NVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFK 117
Query: 137 GRCGWYLDAIGIYL 150
G G++LD +YL
Sbjct: 118 GSIGYWLDYFSMYL 131
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKHGG-TGGFRHDRVIFDY 330
G F+DG +TGIR+INLS N I +V YD +G G H GF ++ D+
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E + +++G G V G ++RSLTF T K +GP+G G F+ I G IVGF G
Sbjct: 61 PSEYIMEVSGYTGNVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G +LD +Y+ +
Sbjct: 119 SIGYWLDYFSMYLSL 133
>pdb|1UGW|A Chain A, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGW|G Chain G, Crystal Structure Of Jacalin- Gal Complex
pdb|1UGX|A Chain A, Crystal Structure Of Jacalin- Me-Alpha-T-Antigen
(Gal-Beta(1-3)- Galnac-Alpha-O-Me) Complex
pdb|1UGY|A Chain A, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1UGY|G Chain G, Crystal Structure Of Jacalin- Mellibiose (Gal-Alpha(1-6)-
Glc) Complex
pdb|1WS4|A Chain A, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS4|G Chain G, Crystal Structure Of Jacalin- Me-alpha-mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|A Chain A, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
pdb|1WS5|G Chain G, Crystal Structure Of Jacalin-Me-Alpha-Mannose Complex:
Promiscuity Vs Specificity
Length = 133
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 21 GTRWDDGVHTTVRQLVIAHG--AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVK--LD 76
G +DDG T +R++ +++ I Q+ YD G + H + T F VK LD
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHV-SFITGFTPVKISLD 59
Query: 77 DPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFH 136
P E++ V G+ G N G V VRSLTF++N+KTYGP+GV GT F+ P+ G IVGF
Sbjct: 60 FPSEYIMEVSGYTG--NVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFK 117
Query: 137 GRCGWYLDAIGIYL 150
G G++LD +YL
Sbjct: 118 GSIGYWLDYFSMYL 131
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKH-GGTGGFRHDRVIFDY 330
G F+DG +TGIR+INLS N I +V YD +G G H GF ++ D+
Sbjct: 1 GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E + +++G G V G ++RSLTF T K +GP+G G F+ I G IVGF G
Sbjct: 61 PSEYIMEVSGYTGNVS--GYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G +LD +Y+ +
Sbjct: 119 SIGYWLDYFSMYLSL 133
>pdb|1JOT|A Chain A, Structure Of The Lectin Mpa Complexed With T-Antigen
Disaccharide
pdb|3LLY|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
pdb|3LLZ|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With Gal-Beta-1,3-Galnac
pdb|3LM1|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|C Chain C, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|E Chain E, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|G Chain G, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|I Chain I, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|K Chain K, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|M Chain M, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|O Chain O, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
Length = 133
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 5/133 (3%)
Query: 21 GTRWDDGVHTTVRQLVIAHGA--GIDSIQIEYDNKGGSCWSEKHGGN-GGTKFDQVKLDD 77
G +DDG +T +R++ + + I +++ YD G +E H G K ++ L+
Sbjct: 1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEF 60
Query: 78 PDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGFHG 137
P E++ V G+ G G +RSLTF++N++TYGP+GV GT FS P+ G IVGF G
Sbjct: 61 PSEYIVEVSGYVGKV--EGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKG 118
Query: 138 RCGWYLDAIGIYL 150
G++LD IYL
Sbjct: 119 SIGYWLDYFSIYL 131
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 274 GSMFNDGTYTGIRQINLSRN--VGIVSMKVCYDQDGKAVWGSKHGG-TGGFRHDRVIFDY 330
G F+DG YTGIR+IN N I ++V YD +G H GF+ ++ ++
Sbjct: 1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEF 60
Query: 331 PYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGFHG 390
P E + +++G G V G +IRSLTF T K +GP+G G FS I G IVGF G
Sbjct: 61 PSEYIVEVSGYVGKVE--GYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKG 118
Query: 391 RDGLFLDAIGVYVKV 405
G +LD +Y+ +
Sbjct: 119 SIGYWLDYFSIYLSL 133
>pdb|2JZ4|A Chain A, Putative 32 Kda Myrosinase Binding Protein At3g16450.1
From Arabidopsis Thaliana
Length = 299
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 17 GGQNGTRWDDGVHTTVRQLVIAHGA-GIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKL 75
GG GT WDDG + V+++ + G GI +++ EY+ + +HG F++ ++
Sbjct: 160 GGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHGKPTLLGFEEFEI 219
Query: 76 DDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGGKIVGF 135
D P E++T+V G Y + + L F++N++T PFG+E GT F G KIVGF
Sbjct: 220 DYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLEAGTAFELKEEGHKIVGF 279
Query: 136 HGRCGWYLDAIGIYL 150
HG+ L G+++
Sbjct: 280 HGKASELLHQFGVHV 294
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 270 GGTGGSMFNDGTYTGIRQINLSR-NVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIF 328
GG G+ ++DG Y G++++ + + GI ++K Y++ + + G +HG +
Sbjct: 160 GGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHGKPTLLGFEEFEI 219
Query: 329 DYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEGKIVGF 388
DYP E +T + GTY + II L F T K PFG E G +F K KIVGF
Sbjct: 220 DYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLEAGTAFELKEEGHKIVGF 279
Query: 389 HGRDGLFLDAIGVYV 403
HG+ L GV+V
Sbjct: 280 HGKASELLHQFGVHV 294
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 24 WDDGVHTTVRQLVIAHGA-GIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFL 82
WDDGVH VR++ + G G+ SI + Y +HG F+ ++D D+++
Sbjct: 15 WDDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHGKKTLLGFETFEVD-ADDYI 73
Query: 83 TSVHGHYGATNDRGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFP-MTGGKIVGFHGRCG 140
+V Y + S + S+TF + + KT P+G+E F GGK+VGFHGR G
Sbjct: 74 VAVQVTYDNVFGQDSDIITSITFNTFKGKTSPPYGLETQKKFVLKDKNGGKLVGFHGRAG 133
Query: 141 WYLDAIGIYL 150
L A+G Y
Sbjct: 134 EALYALGAYF 143
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 10/131 (7%)
Query: 278 NDGTYTGIRQINLSR-NVGIVSMKVCYDQDGKAVWGSKHGGTG--GFRHDRVIFDYPYEI 334
+DG + G+R++++ + G+ S+ V Y +D + V G +HG GF V D Y +
Sbjct: 16 DDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHGKKTLLGFETFEVDAD-DYIV 74
Query: 335 LTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGP-FGEEQGQSF--SNKIGEGKIVGFHGR 391
Q+T Y V +II S+TF+T KGK P +G E + F +K G GK+VGFHGR
Sbjct: 75 AVQVT--YDNVFGQDSDIITSITFNTFKGKTSPPYGLETQKKFVLKDKNG-GKLVGFHGR 131
Query: 392 DGLFLDAIGVY 402
G L A+G Y
Sbjct: 132 AGEALYALGAY 142
>pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|1X1V|B Chain B, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
pdb|3MIT|A Chain A, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIT|B Chain B, Structure Of Banana Lectin-Alpha-D-Mannose Complex
pdb|3MIU|A Chain A, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIU|B Chain B, Structure Of Banana Lectin-Pentamannose Complex
pdb|3MIV|A Chain A, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
pdb|3MIV|B Chain B, Structure Of Banana Lectin - Glc-Alpha(1,2)-Glc Complex
Length = 141
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 11 IAVGPWGGQNGTRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKF 70
I VG WGG G+ +D G + + I G +D++ + + G + GG+GGT
Sbjct: 5 IKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYG-KTETRHFGGSGGTPH 63
Query: 71 DQVKLDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGG 130
+ V + E+L + G +G N G V V L F +N+K+YGPFG GT FS P+ G
Sbjct: 64 EIVLQEG--EYLVGMKGEFG--NYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAG 119
Query: 131 KIVGFHGRCGWYLDAIGIYL 150
KI GF GR G ++DAIG+YL
Sbjct: 120 KISGFFGRGGDFIDAIGVYL 139
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 263 AITYGPWGGTGGSMFNDGTYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKH-GGTGGF 321
AI G WGG GGS F+ G I + + + ++ V + GK ++H GG+GG
Sbjct: 4 AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTE--TRHFGGSGGT 61
Query: 322 RHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIG 381
H+ V+ + Y L + G +G Y G ++ L F T K +GPFG G FS I
Sbjct: 62 PHEIVLQEGEY--LVGMKGEFG--NYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIA 117
Query: 382 EGKIVGFHGRDGLFLDAIGVYVK 404
GKI GF GR G F+DAIGVY++
Sbjct: 118 AGKISGFFGRGGDFIDAIGVYLE 140
>pdb|2BMY|A Chain A, Banana Lectin
pdb|2BMY|B Chain B, Banana Lectin
pdb|2BMZ|A Chain A, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BMZ|B Chain B, Banana Lectin Bound To Xyl-B1,3 Man-A-O-Methyl (Xm)
pdb|2BN0|A Chain A, Banana Lectin Bound To Laminaribiose
pdb|2BN0|B Chain B, Banana Lectin Bound To Laminaribiose
Length = 141
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Query: 11 IAVGPWGGQNGTRWDDGVHTTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKF 70
I VG WGG G+ +D G + + I G +D + + + G + +GG+GGT
Sbjct: 5 IKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYG-KTETRHYGGSGGTPH 63
Query: 71 DQVKLDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTGG 130
+ V + E+L + G N G+V + L F +N+K YGPFG GT FS P+ G
Sbjct: 64 EIVLQEG--EYLVGMAGE--VANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAG 119
Query: 131 KIVGFHGRCGWYLDAIGIYL 150
KI GF GR G +LDAIG+YL
Sbjct: 120 KISGFFGRGGKFLDAIGVYL 139
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 263 AITYGPWGGTGGSMFNDGTYTGIRQINLSRNVGIVSMKVCYDQDGKAVWGSKH-GGTGGF 321
AI G WGG GGS F+ G I + + + + V + GK ++H GG+GG
Sbjct: 4 AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTE--TRHYGGSGGT 61
Query: 322 RHDRVIFDYPYEILTQITGTYGPVM-YMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKI 380
H+ V+ + Y + G G V Y G ++ L F T K +GPFG G FS I
Sbjct: 62 PHEIVLQEGEY-----LVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPI 116
Query: 381 GEGKIVGFHGRDGLFLDAIGVYVK 404
GKI GF GR G FLDAIGVY++
Sbjct: 117 AAGKISGFFGRGGKFLDAIGVYLE 140
>pdb|1C3K|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin
pdb|1C3M|A Chain A, Crystal Structure Of Heltuba Complexed To Man(1-3)man
pdb|1C3N|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin Complexed
To Man(1- 2)man
Length = 147
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 11 IAVGPWGGQNGTRWDDGVHT-TVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTK 69
+ GPWGG G RW H + ++I G I SIQ Y +K + G G K
Sbjct: 8 VQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGDK 67
Query: 70 FDQVKLDDPDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMTG 129
+ + + DE +T++ G +GA V SLTFQ+N+K YGPFG + FS P+T
Sbjct: 68 AETITFAE-DEDITAISGTFGAYYHM--TVVTSLTFQTNKKVYGPFGTVASSSFSLPLTK 124
Query: 130 GKIVGFHGRCGWYLDAIG 147
GK GF G G LD+IG
Sbjct: 125 GKFAGFFGNSGDVLDSIG 142
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 263 AITYGPWGGTGGSMFNDGTYTG-IRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGF 321
A+ GPWGG GG + + G I I + I S++ Y + S G G
Sbjct: 7 AVQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGD 66
Query: 322 RHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIG 381
+ + + F E +T I+GT+G +M ++ SLTF T K +GPFG SFS +
Sbjct: 67 KAETITFAED-EDITAISGTFGAYYHM--TVVTSLTFQTNKKVYGPFGTVASSSFSLPLT 123
Query: 382 EGKIVGFHGRDGLFLDAIGVYVKVGMVTP 410
+GK GF G G LD+IG G+V P
Sbjct: 124 KGKFAGFFGNSGDVLDSIG-----GVVVP 147
>pdb|1OUW|A Chain A, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|B Chain B, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|C Chain C, Crystal Structure Of Calystegia Sepium Agglutinin
pdb|1OUW|D Chain D, Crystal Structure Of Calystegia Sepium Agglutinin
Length = 152
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 14 GPWGGQNGTRWDDGVHTTVRQLVIAHGAGID---SIQIEYDNKGGSCWSEKHGGNGGTKF 70
GPWG G W + Q+VI++G G + ++ GS + GG G
Sbjct: 9 GPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSI 68
Query: 71 DQVKLDD--PDEFLTSVHGHYGATNDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFP-M 127
++ + DE+LT + G +G D +RS+TF +N K +GP+G + GT FS +
Sbjct: 69 TGTEMVNIGTDEYLTGISGTFGIYLDNN--VLRSITFTTNLKAHGPYGQKVGTPFSSANV 126
Query: 128 TGGKIVGFHGRCGWYLDAIGIY 149
G +IVGF GR G+Y+DAIG Y
Sbjct: 127 VGNEIVGFLGRSGYYVDAIGTY 148
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 267 GPWGGTGGSMFNDGTYTGIRQINLSRNVG--------IVSMKVCYDQDGKAVWGSKHGGT 318
GPWG GG+ ++ I QI +S G S K +D V G GG
Sbjct: 9 GPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGG---GGP 65
Query: 319 GGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFS- 377
++ E LT I+GT+G +Y+ N++RS+TF T HGP+G++ G FS
Sbjct: 66 DSITGTEMVNIGTDEYLTGISGTFG--IYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSS 123
Query: 378 -NKIGEGKIVGFHGRDGLFLDAIGVY 402
N +G +IVGF GR G ++DAIG Y
Sbjct: 124 ANVVGN-EIVGFLGRSGYYVDAIGTY 148
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|E Chain E, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
Length = 160
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 93 NDRGSVFVRSLTFQSNRKTYGPFGVEQGTYFSFPMT-GGKIVGFHGRCGWYLDAIGIY 149
N +G +RS+ F +N+K YGP+G GT F+ + G KIVGF G GWY+DAIG Y
Sbjct: 99 NYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAY 156
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 347 YMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSNKIGEG-KIVGFHGRDGLFLDAIGVY 402
Y G N+IRS+ F T K ++GP+G G F+ KI +G KIVGF G G ++DAIG Y
Sbjct: 100 YKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAY 156
>pdb|3APA|A Chain A, Crystal Structure Of Human Pancreatic Secretory Protein
Zg16p
Length = 141
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 279 DGTYTGIR-QINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQ 337
DG T +R ++N IV ++V Y + VW GG G + IF +P E + Q
Sbjct: 28 DGPITALRVRVN---TYYIVGLQVRYGK----VWSDYVGGRNGDLEE--IFLHPGESVIQ 78
Query: 338 ITGTYGPVMYMGPNIIRSLTFHTTKGKHGPFGEEQGQSFSN-KIGEGKIVGF-HGRDGLF 395
++G Y + + L F T KG++ FG++ G SF+ + ++ F GR G
Sbjct: 79 VSGKYKWYL-------KKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSL 131
Query: 396 LDAIGVYVKV 405
+DAIG++ V
Sbjct: 132 IDAIGLHWDV 141
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 43 IDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGHYGATNDRGSVFVRS 102
I +Q+ Y G WS+ GG G +++ L P E + V G Y +++
Sbjct: 43 IVGLQVRY----GKVWSDYVGGRNG-DLEEIFLH-PGESVIQVSGKY-------KWYLKK 89
Query: 103 LTFQSNRKTYGPFGVEQGTYF-SFPMTGGKIVGF-HGRCGWYLDAIGIY 149
L F +++ Y FG + GT F + P+ ++ F GR G +DAIG++
Sbjct: 90 LVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLH 138
>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 130
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 380 IGEGKIVGFHGRDGLFLDAIGVYVKVGMVTPATHPVSNAIVRADTPIAEIDNPQWSNKLL 439
IGE +++ H + ++ IG K G+++P R D P+A+ + +W+N +L
Sbjct: 47 IGEFEVIDDHRSKKVVVELIGRINKCGVISP----------RYDVPLADFE--KWTNNIL 94
Query: 440 VAKQ 443
++Q
Sbjct: 95 PSRQ 98
>pdb|3LL1|A Chain A, Monomeric Griffithsin With A Single Gly-Ser Insertion And
Mutations To Remove Residual Self-Association
Length = 122
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 66 RSGDYIDNISFETNMGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 119
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 306 DGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRS------LTFH 359
D + G HGG+GG T T+G Y+ IRS ++F
Sbjct: 32 DAIIIDGVHHGGSGG--------------NLSPTFTFGSGEYISNMTIRSGDYIDNISFE 77
Query: 360 TTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVY 402
T G+ GP+G G + N + K++ +G G +LD++ +Y
Sbjct: 78 TNMGRRFGPYGGSGGSA--NTLSNVKVIQINGSAGDYLDSLDIY 119
>pdb|3LL2|A Chain A, Monomeric Griffithsin In Complex With A High-Mannose
Branched Carbohydrate
Length = 123
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 66 RSGDYIDNISFETNMGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 119
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 306 DGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRS------LTFH 359
D + G HGG+GG T T+G Y+ IRS ++F
Sbjct: 32 DAIIIDGVHHGGSGG--------------NLSPTFTFGSGEYISNMTIRSGDYIDNISFE 77
Query: 360 TTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVYVK 404
T G+ GP+G G + N + K++ +G G +LD++ +Y +
Sbjct: 78 TNMGRRFGPYGGSGGSA--NTLSNVKVIQINGSAGDYLDSLDIYYE 121
>pdb|3LL0|A Chain A, Monomeric Griffithsin With Two Gly-Ser Insertions
Length = 125
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 68 RSGDYIDNISFETNMGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 121
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 306 DGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRS------LTFH 359
D + G HGG+GG T T+G Y+ IRS ++F
Sbjct: 34 DAIIIDGVHHGGSGG--------------NLSPTFTFGSGEYISNMTIRSGDYIDNISFE 79
Query: 360 TTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVYVK 404
T G+ GP+G G + N + K++ +G G +LD++ +Y +
Sbjct: 80 TNMGRRFGPYGGSGGSA--NTLSNVKVIQINGSAGDYLDSLDIYYE 123
>pdb|3LKY|A Chain A, Monomeric Griffithsin With A Single Gly-Ser Insertion
Length = 123
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 66 RSGDYIDNISFETNMGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 119
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 306 DGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRS------LTFH 359
D + G HGG+GG T T+G Y+ IRS ++F
Sbjct: 32 DAIIIDGVHHGGSGG--------------NLSPTFTFGSGEYISNMTIRSGDYIDNISFE 77
Query: 360 TTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVYVK 404
T G+ GP+G G + N + K++ +G G +LD++ +Y +
Sbjct: 78 TNMGRRFGPYGGSGGSA--NTLSNVKVIQINGSAGDYLDSLDIYYE 121
>pdb|2HYQ|A Chain A, Crystal Structure Of A Complex Of Griffithsin With
6alpha-Mannobiose
pdb|2HYQ|B Chain B, Crystal Structure Of A Complex Of Griffithsin With
6alpha-Mannobiose
pdb|2HYR|A Chain A, Crystal Structure Of A Complex Of Griffithsin With Maltose
pdb|2HYR|B Chain B, Crystal Structure Of A Complex Of Griffithsin With Maltose
pdb|2NU5|A Chain A, Crystal Structure Of A Complex Of Griffithsin
Cocrystallized With N- Acetylglucosamine
pdb|2NU5|B Chain B, Crystal Structure Of A Complex Of Griffithsin
Cocrystallized With N- Acetylglucosamine
pdb|2NUO|A Chain A, Crystal Structure Of A Complex Of Griffithsin With Glucose
pdb|2NUO|B Chain B, Crystal Structure Of A Complex Of Griffithsin With Glucose
pdb|2GUD|A Chain A, Crystal Structure Of A Complex Of Griffithsin With Mannose
At 0.94 A Resolution
pdb|2GUD|B Chain B, Crystal Structure Of A Complex Of Griffithsin With Mannose
At 0.94 A Resolution
pdb|2GUC|A Chain A, Crystal Structure Of A Complex Of Griffithsin With Mannose
At 1.78 A Resolution.
pdb|2GUC|B Chain B, Crystal Structure Of A Complex Of Griffithsin With Mannose
At 1.78 A Resolution.
pdb|2GTY|A Chain A, Crystal Structure Of Unliganded Griffithsin
pdb|2GTY|B Chain B, Crystal Structure Of Unliganded Griffithsin
pdb|2GUE|A Chain A, Crystal Structure Of A Complex Of Griffithsin With
N-Acetylglucosamine
pdb|2GUE|B Chain B, Crystal Structure Of A Complex Of Griffithsin With
N-Acetylglucosamine
Length = 122
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 65 RSGDYIDNISFETNMGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 118
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 23/106 (21%)
Query: 306 DGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNIIRS------LTFH 359
D + G HGG+GG T T+G Y+ IRS ++F
Sbjct: 31 DAIIIDGVHHGGSGG--------------NLSPTFTFGSGEYISNMTIRSGDYIDNISFE 76
Query: 360 TTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVYVK 404
T G+ GP+G G + N + K++ +G G +LD++ +Y +
Sbjct: 77 TNMGRRFGPYGGSGGSA--NTLSNVKVIQINGSAGDYLDSLDIYYE 120
>pdb|2GUX|A Chain A, Selenomethionine Derivative Of Griffithsin
Length = 138
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 95 RGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIY 149
R ++ +++F++N + +GP+G G+ + ++ K++ +G G YLD++ IY
Sbjct: 81 RSGDYIDNISFETNXGRRFGPYGGSGGS--ANTLSNVKVIQINGSAGDYLDSLDIY 134
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 339 TGTYGPVMYMGPNIIRS------LTFHTTKGKH-GPFGEEQGQSFSNKIGEGKIVGFHGR 391
T T+G Y+ IRS ++F T G+ GP+G G + N + K++ +G
Sbjct: 66 TFTFGSGEYISNXTIRSGDYIDNISFETNXGRRFGPYGGSGGSA--NTLSNVKVIQINGS 123
Query: 392 DGLFLDAIGVYVK 404
G +LD++ +Y +
Sbjct: 124 AGDYLDSLDIYYE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,379,501
Number of Sequences: 62578
Number of extensions: 716972
Number of successful extensions: 1397
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 82
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)