Query 009701
Match_columns 528
No_of_seqs 351 out of 953
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.3E-29 2.8E-34 274.7 18.8 139 264-405 3-143 (470)
2 PLN02193 nitrile-specifier pro 100.0 3.2E-29 7E-34 271.5 18.9 140 10-152 2-143 (470)
3 PF01419 Jacalin: Jacalin-like 100.0 2.4E-29 5.2E-34 227.5 14.4 128 274-405 1-130 (130)
4 PF01419 Jacalin: Jacalin-like 100.0 6.1E-29 1.3E-33 224.9 15.0 128 21-152 1-130 (130)
5 KOG4525 Jacalin-like lectin do 98.6 9.2E-08 2E-12 100.6 6.6 126 263-403 482-613 (614)
6 KOG4525 Jacalin-like lectin do 98.4 4.2E-07 9.1E-12 95.8 7.6 128 8-150 480-613 (614)
7 PF14584 DUF4446: Protein of u 14.7 1.3E+02 0.0029 28.3 2.6 38 364-406 87-130 (151)
8 PRK13885 conjugal transfer pro 13.1 4.4E+02 0.0096 27.7 6.1 13 100-112 139-151 (299)
9 PRK13839 conjugal transfer pro 12.2 2.5E+02 0.0055 29.2 3.9 13 100-112 128-140 (277)
10 TIGR02781 VirB9 P-type conjuga 12.1 7.5E+02 0.016 24.9 7.3 41 70-113 50-104 (243)
No 1
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=1.3e-29 Score=274.69 Aligned_cols=139 Identities=29% Similarity=0.519 Sum_probs=128.1
Q ss_pred eeeeeeeCCCCCCCccCCCCceEEEEEEEC-CeEEEEEEEEecCCcEEEccCCCCCCCCcceEEEecCCCcEEEEEEEEE
Q 009701 264 ITYGPWGGTGGSMFNDGTYTGIRQINLSRN-VGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTY 342 (528)
Q Consensus 264 ~k~Gp~GG~gG~~fddg~~~gVr~I~V~~g-~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~e~~Ldyp~EyIt~V~Gt~ 342 (528)
.|+++|||++|+.|||+.+++||||+|.++ ..|++|+|+|+++++++++..||..++...+||+|+ |+||||+|+|+|
T Consensus 3 ~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~~~~~~~~~~-~~e~~~~v~g~~ 81 (470)
T PLN02193 3 QKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID-ADDYIVYVEGYR 81 (470)
T ss_pred eeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCCCCcEEEEEC-CCCcEEEEEEEe
Confidence 688999999999999999999999999997 599999999999999888899999887556899999 999999999999
Q ss_pred cCcccCCCcEEEEEEEEeCCC-ccccCCCCCCceEEEeecCCEEEEEEEecCCCccEEEEEEEe
Q 009701 343 GPVMYMGPNIIRSLTFHTTKG-KHGPFGEEQGQSFSNKIGEGKIVGFHGRDGLFLDAIGVYVKV 405 (528)
Q Consensus 343 g~~~~~~~~~I~sLtF~TNkg-~~gpfG~~~Gt~F~~~~~g~~IVGF~GRaG~~ldaIGvy~~~ 405 (528)
+++......+|+||+|+|||+ +++|||...|++|++ ++++|||||||++.+|++||+|+..
T Consensus 82 ~~~~~~~~~~i~~l~f~t~~~~~~~~~g~~~g~~f~~--~~~~ivgf~G~~~~~~~~ig~y~~~ 143 (470)
T PLN02193 82 EKVNDMTSEMITFLSFKTYKGKTSHPIEKRPGVKFVL--QGGKIVGFHGRSTDVLHSLGAYISL 143 (470)
T ss_pred cCcCCCCceeEEEEEEEeCCCccccccccCCCCEEEE--cCCeEEEEeccCCCcEEeeEEEEec
Confidence 997655668999999999996 678999999999998 4899999999999999999999874
No 2
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=3.2e-29 Score=271.52 Aligned_cols=140 Identities=32% Similarity=0.590 Sum_probs=128.3
Q ss_pred cEEeccccCCCCCccccCCCCcEEEEEEEEC-CeeeEEEEEEeCCCCeeeecCcCCCCCCeeeEEEecCCCceEEEEEEE
Q 009701 10 PIAVGPWGGQNGTRWDDGVHTTVRQLVIAHG-AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGH 88 (528)
Q Consensus 10 ~~k~Gp~GG~gG~~~ddg~~~~V~~I~V~~G-~~Id~Iqf~Y~~~G~~~~~~~hGg~gG~~~~~~~L~~p~EyItsVsG~ 88 (528)
..|+++|||++|+.|||+.+++|+||+|.++ ..|++|+|+|+++++.+++..||......+++|+|+ |+||||+|+|+
T Consensus 2 ~~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~~~~~~~~~~-~~e~~~~v~g~ 80 (470)
T PLN02193 2 AQKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTELGVEEFEID-ADDYIVYVEGY 80 (470)
T ss_pred ceeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCCCCcEEEEEC-CCCcEEEEEEE
Confidence 4799999999999999999999999999988 599999999999999888889998876556899999 99999999999
Q ss_pred EcccCCCCceEEEEEEEEECC-ceeecCcccCCceEEeecCCCEEEEEEEEcCCCccEEEEEEEe
Q 009701 89 YGATNDRGSVFVRSLTFQSNR-KTYGPFGVEQGTYFSFPMTGGKIVGFHGRCGWYLDAIGIYLKS 152 (528)
Q Consensus 89 yg~~~~~~~~~I~sL~F~TNk-~t~gpfG~~~Gt~Fs~~~~g~kIVGF~Grsg~~LdaIGvy~~p 152 (528)
|+........+|+||+|+||| |+|+|||...|++|++ .+++|||||||++++|++||+|+..
T Consensus 81 ~~~~~~~~~~~i~~l~f~t~~~~~~~~~g~~~g~~f~~--~~~~ivgf~G~~~~~~~~ig~y~~~ 143 (470)
T PLN02193 81 REKVNDMTSEMITFLSFKTYKGKTSHPIEKRPGVKFVL--QGGKIVGFHGRSTDVLHSLGAYISL 143 (470)
T ss_pred ecCcCCCCceeEEEEEEEeCCCccccccccCCCCEEEE--cCCeEEEEeccCCCcEEeeEEEEec
Confidence 998754455799999999999 6999999999999998 5899999999999999999999874
No 3
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=99.96 E-value=2.4e-29 Score=227.49 Aligned_cols=128 Identities=44% Similarity=0.807 Sum_probs=115.9
Q ss_pred CCCCccCCCCceEEEEEEE-CCeEEEEEEEEecCCcEEEccCCCCCCCCcceEEEecCCCcEEEEEEEEEcCcccCCCcE
Q 009701 274 GSMFNDGTYTGIRQINLSR-NVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQITGTYGPVMYMGPNI 352 (528)
Q Consensus 274 G~~fddg~~~gVr~I~V~~-g~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~e~~Ldyp~EyIt~V~Gt~g~~~~~~~~~ 352 (528)
|+.|||+.+++|++|.|++ +..|++|||.|++.+..+|+..||+.++...++|+|++|+||||+|+|+|++ ...+
T Consensus 1 g~~~d~g~~~~v~~i~v~~~~~~I~~Iq~~Y~~~~g~~~~~~~G~~~g~~~~~~~l~~~~E~It~isG~~~~----~~~~ 76 (130)
T PF01419_consen 1 GDSWDDGGHDGVKKIVVIYGGDGIDGIQFTYDDGGGQVWGQQHGGNGGGSTKEFELDDPDEYITSISGTYGK----GHDY 76 (130)
T ss_dssp SEEEEEECSSEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEECSSSTEEEEEEEETTTS-EEEEEEEEEE----TEEE
T ss_pred CCcccCCCCCCCEEEEEEECCCEEEEEEEEEECCCceEEeeccCcccccCccceEECCCccEEEEEEEEEEc----CccE
Confidence 6789999999999999997 5899999999987766778999999988557899999889999999999985 3479
Q ss_pred EEEEEEEeCCCccccCCCCCCceEEEee-cCCEEEEEEEecCCCccEEEEEEEe
Q 009701 353 IRSLTFHTTKGKHGPFGEEQGQSFSNKI-GEGKIVGFHGRDGLFLDAIGVYVKV 405 (528)
Q Consensus 353 I~sLtF~TNkg~~gpfG~~~Gt~F~~~~-~g~~IVGF~GRaG~~ldaIGvy~~~ 405 (528)
|++|+|+||++++.|||...|++|+++. ++++|||||||++++||+|||||.|
T Consensus 77 I~sL~F~Tnkg~~~~~gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~~p 130 (130)
T PF01419_consen 77 ITSLTFTTNKGRYSPFGGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYFTP 130 (130)
T ss_dssp EEEEEEEESSSEEEEEECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEecCCcccCcccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEEeC
Confidence 9999999999999998878899999987 7899999999999999999999985
No 4
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry. Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
Probab=99.96 E-value=6.1e-29 Score=224.87 Aligned_cols=128 Identities=52% Similarity=1.053 Sum_probs=115.5
Q ss_pred CCccccCCCCcEEEEEEEEC-CeeeEEEEEEeCCCCeeeecCcCCCCCCeeeEEEecCCCceEEEEEEEEcccCCCCceE
Q 009701 21 GTRWDDGVHTTVRQLVIAHG-AGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTSVHGHYGATNDRGSVF 99 (528)
Q Consensus 21 G~~~ddg~~~~V~~I~V~~G-~~Id~Iqf~Y~~~G~~~~~~~hGg~gG~~~~~~~L~~p~EyItsVsG~yg~~~~~~~~~ 99 (528)
|+.|||+.+++|++|+|+++ ..|++|||.|++.+..+++..||..++...++|+|++|+|||++|+|+|+. ...+
T Consensus 1 g~~~d~g~~~~v~~i~v~~~~~~I~~Iq~~Y~~~~g~~~~~~~G~~~g~~~~~~~l~~~~E~It~isG~~~~----~~~~ 76 (130)
T PF01419_consen 1 GDSWDDGGHDGVKKIVVIYGGDGIDGIQFTYDDGGGQVWGQQHGGNGGGSTKEFELDDPDEYITSISGTYGK----GHDY 76 (130)
T ss_dssp SEEEEEECSSEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEECSSSTEEEEEEEETTTS-EEEEEEEEEE----TEEE
T ss_pred CCcccCCCCCCCEEEEEEECCCEEEEEEEEEECCCceEEeeccCcccccCccceEECCCccEEEEEEEEEEc----CccE
Confidence 67899999999999999865 899999999987666678999999988568999999889999999999986 3569
Q ss_pred EEEEEEEECCceeecCcccCCceEEeec-CCCEEEEEEEEcCCCccEEEEEEEe
Q 009701 100 VRSLTFQSNRKTYGPFGVEQGTYFSFPM-TGGKIVGFHGRCGWYLDAIGIYLKS 152 (528)
Q Consensus 100 I~sL~F~TNk~t~gpfG~~~Gt~Fs~~~-~g~kIVGF~Grsg~~LdaIGvy~~p 152 (528)
|++|+|+||++++.|||...|++|++++ .+++|||||||++++||+|||||.|
T Consensus 77 I~sL~F~Tnkg~~~~~gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~~p 130 (130)
T PF01419_consen 77 ITSLTFTTNKGRYSPFGGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYFTP 130 (130)
T ss_dssp EEEEEEEESSSEEEEEECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEEEE
T ss_pred EEEEEEEecCCcccCcccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEEeC
Confidence 9999999999988888888899999988 6899999999999999999999987
No 5
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]
Probab=98.56 E-value=9.2e-08 Score=100.63 Aligned_cols=126 Identities=20% Similarity=0.304 Sum_probs=97.9
Q ss_pred Ceeeeeee-CCCCCCCccCCCC--ceEEEEEEECCeEEEEEEEEecCCcEEEccCCCCCCCCcceEEEecCCCcEEEEEE
Q 009701 263 AITYGPWG-GTGGSMFNDGTYT--GIRQINLSRNVGIVSMKVCYDQDGKAVWGSKHGGTGGFRHDRVIFDYPYEILTQIT 339 (528)
Q Consensus 263 ~~k~Gp~G-G~gG~~fddg~~~--gVr~I~V~~g~~IdsIqf~Y~~~G~~~~~~~hGg~gG~~~~e~~Ldyp~EyIt~V~ 339 (528)
+.++.-+| |.+|++-.-..++ .|++|+|+++.++|+|.+.|... +...|..+|+ .+.|+| |+|-|....
T Consensus 482 Vq~s~~ygr~~~gkei~lia~~~r~it~ir~~cg~aldg~~~~ygeE-----svl~g~~~~s-~hdf~l--~gs~i~gf~ 553 (614)
T KOG4525|consen 482 VQLSRDYGRGCNGKEIRLIAPSSRPITLIRLRCGQALDGLVAHYGEE-----SVLEGPYVGS-PHDFQL--PGSLIHGFA 553 (614)
T ss_pred EEechhhcCCCCCceeeeeccccccceEEEEeccccccceEEEeccc-----ceeecccCCC-ccceec--chhhhhhHH
Confidence 44555666 4567766544443 58999999999999999999531 3456777774 678888 599998887
Q ss_pred EEEcCcccCCCcEEEEEEEEeCCCcccc-CCCCCCceEE--EeecCCEEEEEEEecCCCccEEEEEE
Q 009701 340 GTYGPVMYMGPNIIRSLTFHTTKGKHGP-FGEEQGQSFS--NKIGEGKIVGFHGRDGLFLDAIGVYV 403 (528)
Q Consensus 340 Gt~g~~~~~~~~~I~sLtF~TNkg~~gp-fG~~~Gt~F~--~~~~g~~IVGF~GRaG~~ldaIGvy~ 403 (528)
-++| .+|+.+++.|..|+..+ ||+..|.-|. ++++|.+||||+|+-|.++|+||+++
T Consensus 554 ~rCg-------awVd~isI~t~~G~t~~~~gn~~ggg~~s~~~pkg~~lvg~~g~lg~~mds~g~~~ 613 (614)
T KOG4525|consen 554 ERCG-------AWVDGISILTTSGDTKRLSGNSSGGGLKSYLVPKGFQLVGFYGTLGPFMDSIGFFI 613 (614)
T ss_pred hhhc-------cceeeEEEEecCCccccccccCCCCccceecCCCceEEEEEeccccchhhheeeec
Confidence 7777 48999999998887766 8988765544 34589999999999999999999986
No 6
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only]
Probab=98.44 E-value=4.2e-07 Score=95.78 Aligned_cols=128 Identities=22% Similarity=0.375 Sum_probs=98.7
Q ss_pred CCcEEecccc-CCCCCccccCCC--CcEEEEEEEECCeeeEEEEEEeCCCCeeeecCcCCCCCCeeeEEEecCCCceEEE
Q 009701 8 KKPIAVGPWG-GQNGTRWDDGVH--TTVRQLVIAHGAGIDSIQIEYDNKGGSCWSEKHGGNGGTKFDQVKLDDPDEFLTS 84 (528)
Q Consensus 8 ~~~~k~Gp~G-G~gG~~~ddg~~--~~V~~I~V~~G~~Id~Iqf~Y~~~G~~~~~~~hGg~gG~~~~~~~L~~p~EyIts 84 (528)
..+.++.-+| |-+|++-.--++ -.|++|+|++|..+|+|.+.|.+. +-..|..+++ .+.|+| |++-|..
T Consensus 480 gtVq~s~~ygr~~~gkei~lia~~~r~it~ir~~cg~aldg~~~~ygeE-----svl~g~~~~s-~hdf~l--~gs~i~g 551 (614)
T KOG4525|consen 480 GTVQLSRDYGRGCNGKEIRLIAPSSRPITLIRLRCGQALDGLVAHYGEE-----SVLEGPYVGS-PHDFQL--PGSLIHG 551 (614)
T ss_pred ccEEechhhcCCCCCceeeeeccccccceEEEEeccccccceEEEeccc-----ceeecccCCC-ccceec--chhhhhh
Confidence 3577788888 557877764443 479999999999999999999421 3456666665 578999 5888887
Q ss_pred EEEEEcccCCCCceEEEEEEEEE-CCceeecCcccCCceE-Ee-ecCCCEEEEEEEEcCCCccEEEEEE
Q 009701 85 VHGHYGATNDRGSVFVRSLTFQS-NRKTYGPFGVEQGTYF-SF-PMTGGKIVGFHGRCGWYLDAIGIYL 150 (528)
Q Consensus 85 VsG~yg~~~~~~~~~I~sL~F~T-Nk~t~gpfG~~~Gt~F-s~-~~~g~kIVGF~Grsg~~LdaIGvy~ 150 (528)
..-++|. +|+.|++.| |-++...||+..|--| ++ +.+|.+||||+|+-|.++|+||+++
T Consensus 552 f~~rCga-------wVd~isI~t~~G~t~~~~gn~~ggg~~s~~~pkg~~lvg~~g~lg~~mds~g~~~ 613 (614)
T KOG4525|consen 552 FAERCGA-------WVDGISILTTSGDTKRLSGNSSGGGLKSYLVPKGFQLVGFYGTLGPFMDSIGFFI 613 (614)
T ss_pred HHhhhcc-------ceeeEEEEecCCccccccccCCCCccceecCCCceEEEEEeccccchhhheeeec
Confidence 7776664 799997776 5578999999876444 23 3378999999999999999999976
No 7
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=14.73 E-value=1.3e+02 Score=28.29 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=28.9
Q ss_pred ccccCCCCCC-ceEEEee----cCC-EEEEEEEecCCCccEEEEEEEeC
Q 009701 364 KHGPFGEEQG-QSFSNKI----GEG-KIVGFHGRDGLFLDAIGVYVKVG 406 (528)
Q Consensus 364 ~~gpfG~~~G-t~F~~~~----~g~-~IVGF~GRaG~~ldaIGvy~~~~ 406 (528)
||-+|..++| -+|++.. ++| .|-+.|||.++++ |..|.
T Consensus 87 RYnAF~dmGg~LSFslAlLD~~~nGvVltsI~~Re~s~~-----YaK~I 130 (151)
T PF14584_consen 87 RYNAFEDMGGDLSFSLALLDDNNNGVVLTSIHSREESRT-----YAKPI 130 (151)
T ss_pred EccCcccccccceeeeEEEeCCCCEEEEEeeecCCCcEE-----EEEEe
Confidence 7888998877 5899865 233 5779999999875 66664
No 8
>PRK13885 conjugal transfer protein TrbG; Provisional
Probab=13.12 E-value=4.4e+02 Score=27.67 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.8
Q ss_pred EEEEEEEECCcee
Q 009701 100 VRSLTFQSNRKTY 112 (528)
Q Consensus 100 I~sL~F~TNk~t~ 112 (528)
-++|.+.||+|+|
T Consensus 139 ~TNL~V~TnrRtY 151 (299)
T PRK13885 139 ETSLVVTTDRRTY 151 (299)
T ss_pred CceEEEEECCcEE
Confidence 3679999999987
No 9
>PRK13839 conjugal transfer protein TrbG; Provisional
Probab=12.25 E-value=2.5e+02 Score=29.15 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.1
Q ss_pred EEEEEEEECCcee
Q 009701 100 VRSLTFQSNRKTY 112 (528)
Q Consensus 100 I~sL~F~TNk~t~ 112 (528)
-++|++.||+|+|
T Consensus 128 ~TNL~V~TnkRtY 140 (277)
T PRK13839 128 VTSMVVTTSRRTY 140 (277)
T ss_pred cceEEEEeCCcEE
Confidence 4789999999987
No 10
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=12.12 E-value=7.5e+02 Score=24.89 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=23.8
Q ss_pred eeEEEecCCCceEEEEEEEEcccCCC-----C-c--------eEEEEEEEEECCceee
Q 009701 70 FDQVKLDDPDEFLTSVHGHYGATNDR-----G-S--------VFVRSLTFQSNRKTYG 113 (528)
Q Consensus 70 ~~~~~L~~p~EyItsVsG~yg~~~~~-----~-~--------~~I~sL~F~TNk~t~g 113 (528)
...|+|+ |+|-|+.|.. |....| + + ..-+.|++.||+|+|-
T Consensus 50 ~T~I~f~-~gE~I~~v~~--GDt~~W~v~~~~n~i~IKP~~~~~~TNl~V~TnkR~Y~ 104 (243)
T TIGR02781 50 STTIEFA-DDETIKTVAV--GDSKAWEVTPNGNKLFIKPTEKDWKTNMTVVTNKRSYV 104 (243)
T ss_pred EEEEEeC-CCCEEEEecc--cCCcceEEEcCCCEEEEEECCCCCCceEEEEECCeEEE
Confidence 3567777 7887766532 211111 1 1 1235699999999873
Done!