BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009702
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 129 bits (323), Expect = 5e-30, Method: Composition-based stats.
Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 16/134 (11%)
Query: 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
R++ +L LL +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S L
Sbjct: 13 RYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNL 72
Query: 74 DTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDR----VGIENFIRAKY 129
D W EQ+ +Q MGN KAN +EA LP + R +E FIR KY
Sbjct: 73 DQWTQEQIQCMQE------------MGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKY 120
Query: 130 EEKRWVSRDGQANS 143
E+K+++ R N+
Sbjct: 121 EKKKYMDRSLDINA 134
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 120 bits (301), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 16/123 (13%)
Query: 8 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISK 67
+++LN +H+ IL LL+ +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+
Sbjct: 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISR 68
Query: 68 VRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDR----VGIEN 123
V+S LD W EQ+ +Q MGN KA +EA LP N+ R +E
Sbjct: 69 VKSVNLDQWTAEQIQCMQD------------MGNTKARLLYEANLPENFRRPQTDQAVEF 116
Query: 124 FIR 126
FIR
Sbjct: 117 FIR 119
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQST 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM--- 101
Query: 88 ACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR 137
C+ G + + + + + P+ R E +I AKY EK+++++
Sbjct: 102 -CELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQST 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM--- 101
Query: 88 ACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR 137
C+ G + + + + + P+ R E +I AKY EK+++++
Sbjct: 102 -CELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQST 87
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM--- 101
Query: 88 ACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR 137
C+ G + + + + + P+ R E +I AKY EK+++++
Sbjct: 102 -CELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 21/144 (14%)
Query: 4 KANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGV 63
+ N+ + R R +LE LL+ P N CADC A P WAS LG+FIC+ CSGIHR++
Sbjct: 11 RENLYFQGKERRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP- 68
Query: 64 HISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDR----- 118
+SKV+S LD W QV F+ S GN+ A + +E+++P Y R
Sbjct: 69 QVSKVKSVRLDAWEEAQVEFMAS------------HGNDAARARFESKVPSFYYRPTPSD 116
Query: 119 --VGIENFIRAKYEEKRWVSRDGQ 140
+ E +IRAKYE + ++ + Q
Sbjct: 117 CQLLREQWIRAKYERQEFIYPEKQ 140
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 21/134 (15%)
Query: 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
R R +LE LL+ P N CADC A P WAS LG+FIC+ CSGIHR++ +SKV+S L
Sbjct: 23 RRRAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRL 80
Query: 74 DTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDR-------VGIENFIR 126
D W QV F+ S GN+ A + +E+++P Y R + E +IR
Sbjct: 81 DAWEEAQVEFMAS------------HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIR 128
Query: 127 AKYEEKRWVSRDGQ 140
AKYE + ++ + Q
Sbjct: 129 AKYERQEFIYPEKQ 142
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL---- 95
Query: 86 STACDCGFFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 137
L MGN N EA+LP + D ++I AKY E R+ R
Sbjct: 96 --------LLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL---- 76
Query: 86 STACDCGFFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 137
L MGN N EA+LP + D ++I AKY E R+ R
Sbjct: 77 --------LLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 128
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 16 RKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
++I+ + ++ N C DC A P W S NLGI C++CSGIHR LGVH S+++S TLD
Sbjct: 5 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64
Query: 76 WLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELP--------PNYDRVGIENFIRA 127
+ L +GN N E LP P D + +++I A
Sbjct: 65 LGTSE------------LLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITA 112
Query: 128 KYEEKRWVSRDGQANSPPR 146
KY E+R+ +R A++ +
Sbjct: 113 KYMERRY-ARKKHADTAAK 130
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 81.6 bits (200), Expect = 9e-16, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 67/124 (54%), Gaps = 22/124 (17%)
Query: 11 LNARHRKILEGLLKLPE-NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69
+NA + + L K E N +C DC P W SVN GIF+C+ CSG+HRSLGVHIS VR
Sbjct: 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVR 63
Query: 70 SATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENFI-RAK 128
S +D + EQ+ +I D G GN+K +Y E NY GI +FI K
Sbjct: 64 SIKMDIFTDEQLKYI-----DKG-------GNKKCQTYLE-----NY---GISDFIPERK 103
Query: 129 YEEK 132
Y K
Sbjct: 104 YRTK 107
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 15/116 (12%)
Query: 1 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60
++EK VS +L +I+ PENR C DC+++ P W S++ +FIC+ CS HR
Sbjct: 12 VDEKGFVSDKLRDNFFQIVR---NRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68
Query: 61 LGVHISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNY 116
+GVHIS VRS+ LD + P IQ D G GN +A +Y++ L N+
Sbjct: 69 MGVHISFVRSSDLDKFTP-----IQLVRMDIG-------GNGRARNYFKQVLGVNF 112
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 18 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-- 75
+ + L +P N+ C DC AK P WAS+ G+F+C+ CSG+HRSLGVH+S +RS LD+
Sbjct: 27 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86
Query: 76 -WLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNY 116
W + + A FF AN+ + + Y
Sbjct: 87 NWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMY 128
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
R RK+L+ + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 82
Query: 74 DTW 76
D W
Sbjct: 83 DKW 85
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 18 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-W 76
I + L +P N+ C DC AK P WAS+ G+F+C+ CSG HRSLGVH+S +RS LD+ W
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 77 LPEQVAFIQ 85
Q+ +Q
Sbjct: 79 SWFQLRCMQ 87
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
R RK+L+ + EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+
Sbjct: 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTM 83
Query: 74 DTW 76
D W
Sbjct: 84 DKW 86
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 80/151 (52%), Gaps = 13/151 (8%)
Query: 5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVH 64
++ ++ +H K+L + LP NR+C DC +GP + ++ +G F+C CSG R L
Sbjct: 2 SSAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP- 60
Query: 65 ISKVRSATLDTWLPEQVAFIQSTACDCGFFLYTAMGNEKANSYWEAELPPNYDRVGIENF 124
+V+S ++ T+ +++ F+Q + ++ + ++++++ +P D ++ F
Sbjct: 61 PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSA-----IPDFRDPQKVKEF 115
Query: 125 IRAKYEEKRWVSRDGQANSPPRGLEEKASIH 155
++ KYE+KRW PP + AS+H
Sbjct: 116 LQEKYEKKRWY-------VPPEQAKVVASVH 139
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 17 KILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76
K+L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++ T+
Sbjct: 9 KMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTF 67
Query: 77 LPEQVAFIQSTACDCGFFLYTAMGNEKANSYW-------EAELPPNYDRVGIENFIRAKY 129
+++ F+Q GNE W + +P D ++ F++ KY
Sbjct: 68 TQQEIEFLQ------------KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKY 115
Query: 130 EEKRWVSRDGQANSPP 145
E+KRW QA S P
Sbjct: 116 EKKRWYVPPEQAKSGP 131
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 97 TAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPP 145
T + ++ YWE E+ P Y RV F+ + EKRW++ PP
Sbjct: 57 TKLATDELFDYWECEVTPPYRRVKY-GFLLQQGHEKRWMTEYDFLTEPP 104
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 99 MGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRGLEE 150
MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R + +
Sbjct: 426 MGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RTVRQ 479
Query: 151 KASIHWQRPGE-KSGHGYTD 169
W G KSG G+ D
Sbjct: 480 FQFTDWPEQGAPKSGEGFID 499
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 99 MGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRGLEE 150
MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R + +
Sbjct: 424 MGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RTVRQ 477
Query: 151 KASIHWQRPGE-KSGHGYTD 169
W G KSG G+ D
Sbjct: 478 FQFTDWPEQGVPKSGEGFID 497
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 99 MGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRGLEE 150
MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R + +
Sbjct: 412 MGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RTIRQ 465
Query: 151 KASIHWQRPGE-KSGHGYTD 169
W G K+G G+ D
Sbjct: 466 FQFTDWPEQGVPKTGEGFID 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,539,594
Number of Sequences: 62578
Number of extensions: 555120
Number of successful extensions: 833
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 24
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)