Query 009702
Match_columns 528
No_of_seqs 168 out of 1194
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 5.7E-40 2E-44 296.5 6.7 123 5-139 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 9.7E-40 3.3E-44 297.1 6.2 122 6-139 7-132 (141)
3 2olm_A Nucleoporin-like protei 100.0 2.3E-38 7.8E-43 287.8 9.4 119 7-138 4-129 (140)
4 3jue_A Arfgap with coiled-coil 100.0 1.3E-34 4.4E-39 292.7 7.3 117 11-139 28-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 4.6E-34 1.6E-38 292.2 9.4 120 7-139 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 1.3E-33 4.3E-38 256.5 6.1 108 14-133 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 5.5E-33 1.9E-37 255.1 5.6 91 13-115 14-105 (149)
8 3dwd_A ADP-ribosylation factor 100.0 3.9E-32 1.3E-36 249.0 9.0 113 12-136 22-145 (147)
9 2p57_A GTPase-activating prote 100.0 9.2E-31 3.1E-35 239.3 6.7 89 14-114 23-112 (144)
10 3sub_A ADP-ribosylation factor 100.0 9.8E-31 3.3E-35 243.1 6.2 110 11-132 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 3.3E-30 1.1E-34 250.5 9.2 120 6-137 20-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 1.4E-30 4.9E-35 267.6 7.0 119 8-138 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1E-29 3.5E-34 244.0 7.7 114 13-138 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.2E-27 4.1E-32 237.2 6.8 91 11-113 20-110 (329)
15 1u5k_A Hypothetical protein; O 83.6 0.44 1.5E-05 45.3 2.1 46 25-86 147-192 (244)
16 1gnf_A Transcription factor GA 60.3 2.3 7.8E-05 32.1 0.5 38 26-63 2-40 (46)
17 2vut_I AREA, nitrogen regulato 57.2 3.4 0.00011 30.8 1.0 35 29-63 2-37 (43)
18 3dfx_A Trans-acting T-cell-spe 52.4 4.3 0.00015 32.5 0.9 39 25-63 4-43 (63)
19 4gat_A Nitrogen regulatory pro 48.5 5 0.00017 32.4 0.8 38 26-63 7-45 (66)
20 4hc9_A Trans-acting T-cell-spe 45.4 5.2 0.00018 35.1 0.5 36 28-63 5-41 (115)
21 1tjl_A DNAK suppressor protein 34.3 12 0.00039 34.3 0.9 34 26-59 109-143 (151)
22 2kgo_A Uncharacterized protein 33.3 4.7 0.00016 35.4 -1.8 32 28-59 56-88 (108)
23 2kae_A GATA-type transcription 31.8 7.5 0.00026 31.8 -0.7 36 27-63 7-45 (71)
24 1d4u_A Nucleotide excision rep 27.0 5.5 0.00019 35.1 -2.4 31 27-57 4-35 (111)
25 3dzy_D Peroxisome proliferator 24.9 19 0.00065 37.1 0.7 31 26-59 48-78 (419)
26 3g9m_A Glucocorticoid receptor 24.8 13 0.00045 31.0 -0.4 30 27-59 1-30 (90)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.7e-40 Score=296.46 Aligned_cols=123 Identities=49% Similarity=0.889 Sum_probs=107.6
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHH
Q 009702 5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI 84 (528)
Q Consensus 5 a~~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~M 84 (528)
+..+++..++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccchHHHHHHHhhcCCCCC----ChHHHHHHHHHHhhhCccccCCC
Q 009702 85 QSTACDCGFFLYTAMGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDG 139 (528)
Q Consensus 85 q~~~~~~g~~Ll~~gGN~kAN~iwEa~LPpss----D~~~re~FIRaKY~eKrF~~~~~ 139 (528)
+. +||.++|.|||+++|+.+ ....+|+|||+||++|+|+.+..
T Consensus 84 ~~------------~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QE------------MGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HT------------CHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HH------------HchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 98 999999999999998654 23568999999999999997643
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=297.14 Aligned_cols=122 Identities=51% Similarity=0.981 Sum_probs=112.7
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHh
Q 009702 6 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85 (528)
Q Consensus 6 ~~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq 85 (528)
...++++++++++|+.|++.|+|++|||||+++|+|||+|||||||+.|+||||.||+|||+||||+||+|++++|++|+
T Consensus 7 ~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~ 86 (141)
T 2crr_A 7 GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQ 86 (141)
T ss_dssp CCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccchHHHHHHHhhcCCCCC----ChHHHHHHHHHHhhhCccccCCC
Q 009702 86 STACDCGFFLYTAMGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDG 139 (528)
Q Consensus 86 ~~~~~~g~~Ll~~gGN~kAN~iwEa~LPpss----D~~~re~FIRaKY~eKrF~~~~~ 139 (528)
. +||.++|.|||+++|+.+ ....+|+|||+||++|+|+.+..
T Consensus 87 ~------------~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 87 D------------MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp H------------THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGG
T ss_pred H------------HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCc
Confidence 8 999999999999998754 23468999999999999997643
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.3e-38 Score=287.85 Aligned_cols=119 Identities=31% Similarity=0.698 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhh
Q 009702 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (528)
Q Consensus 7 ~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~ 86 (528)
..++.+++++++|+.|++.|+|++|||||+++|+|||+|||||||+.|+||||+||+| |+||||+||+|++++|++|+.
T Consensus 4 ~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999996 999999999999999999998
Q ss_pred cccccccccccccchHHHHHHHhhcCCC-------CCChHHHHHHHHHHhhhCccccCC
Q 009702 87 TACDCGFFLYTAMGNEKANSYWEAELPP-------NYDRVGIENFIRAKYEEKRWVSRD 138 (528)
Q Consensus 87 ~~~~~g~~Ll~~gGN~kAN~iwEa~LPp-------ssD~~~re~FIRaKY~eKrF~~~~ 138 (528)
+||.++|.|||+++++ ..|...+++|||+||++++|+.+.
T Consensus 83 ------------~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~ 129 (140)
T 2olm_A 83 ------------HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPP 129 (140)
T ss_dssp ------------CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCH
T ss_pred ------------hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCc
Confidence 9999999999998753 234567899999999999999753
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.3e-34 Score=292.66 Aligned_cols=117 Identities=42% Similarity=0.765 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhcccc
Q 009702 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACD 90 (528)
Q Consensus 11 l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~ 90 (528)
.+++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||+||+|||+||||+||+|++++|++|+.
T Consensus 28 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~---- 103 (368)
T 3jue_A 28 EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE---- 103 (368)
T ss_dssp ----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH----
T ss_pred hhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHH----
Confidence 3455889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHhhcCCCC--------CChHHHHHHHHHHhhhCccccCCC
Q 009702 91 CGFFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRDG 139 (528)
Q Consensus 91 ~g~~Ll~~gGN~kAN~iwEa~LPps--------sD~~~re~FIRaKY~eKrF~~~~~ 139 (528)
+||.++|.|||+++++. .++..+++|||+||++|+|+.+..
T Consensus 104 --------~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 104 --------LGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp --------SCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred --------HccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999999999998642 245678999999999999997644
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=4.6e-34 Score=292.25 Aligned_cols=120 Identities=41% Similarity=0.755 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhh
Q 009702 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (528)
Q Consensus 7 ~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~ 86 (528)
-+++++++++++|++|++.|+|+.|||||+++|+|||+|||||||+.|+||||+| +|||+||||+||+|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccccccccccchHHHHHHHhhcCCCCC-------ChHHHHHHHHHHhhhCccccCCC
Q 009702 87 TACDCGFFLYTAMGNEKANSYWEAELPPNY-------DRVGIENFIRAKYEEKRWVSRDG 139 (528)
Q Consensus 87 ~~~~~g~~Ll~~gGN~kAN~iwEa~LPpss-------D~~~re~FIRaKY~eKrF~~~~~ 139 (528)
+||.++|.|||+++|+.. ....+++|||+||++++|+..+.
T Consensus 92 ------------~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 ------------HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp ------------SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred ------------hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 23458899999999999997654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.98 E-value=1.3e-33 Score=256.47 Aligned_cols=108 Identities=32% Similarity=0.628 Sum_probs=98.0
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhccccccc
Q 009702 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCGF 93 (528)
Q Consensus 14 r~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~~g~ 93 (528)
..+++|+.|++.|+|++|||||+++|+|+|+|||||||+.|+||||+||+|||+||||+||+|++++|++|+.
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~------- 94 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI------- 94 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHH-------
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHh-------
Confidence 4567888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchHHHHHHHhhcCCC--C-CChHHHHHHHHHHhhhCc
Q 009702 94 FLYTAMGNEKANSYWEAELPP--N-YDRVGIENFIRAKYEEKR 133 (528)
Q Consensus 94 ~Ll~~gGN~kAN~iwEa~LPp--s-sD~~~re~FIRaKY~eKr 133 (528)
+||.++|+|||+++.. . ..+++.+.||..+|+++.
T Consensus 95 -----~GN~~an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 95 -----GGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp -----CCHHHHHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 9999999999985432 2 225678999999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=5.5e-33 Score=255.11 Aligned_cols=91 Identities=42% Similarity=0.773 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCC-CCHHHHHHHhhccccc
Q 009702 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSTACDC 91 (528)
Q Consensus 13 ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~-WT~eEV~~Mq~~~~~~ 91 (528)
++++++|+.|++.|+|++|||||+++|+|+|+|||||||+.|+||||.||+|||+||||+||. |+++||++|+.
T Consensus 14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~----- 88 (149)
T 2crw_A 14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQV----- 88 (149)
T ss_dssp HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHT-----
T ss_pred HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHH-----
Confidence 467899999999999999999999999999999999999999999999999999999999996 99999999998
Q ss_pred ccccccccchHHHHHHHhhcCCCC
Q 009702 92 GFFLYTAMGNEKANSYWEAELPPN 115 (528)
Q Consensus 92 g~~Ll~~gGN~kAN~iwEa~LPps 115 (528)
+||.++|.|||++..+.
T Consensus 89 -------~GN~~an~~~e~~~~~~ 105 (149)
T 2crw_A 89 -------GGNASASSFFHQHGCST 105 (149)
T ss_dssp -------TCHHHHHHHHHHHCCCC
T ss_pred -------HhhHHHHHHHHhcCCCC
Confidence 99999999999998764
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.9e-32 Score=248.98 Aligned_cols=113 Identities=36% Similarity=0.676 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhccccc
Q 009702 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDC 91 (528)
Q Consensus 12 ~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~~ 91 (528)
+++++++|+.|++.|+|+.|+|||+++|+|||+|||||||+.|+||||.||+|||+||||+||+|+++||++|+.
T Consensus 22 ~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~----- 96 (147)
T 3dwd_A 22 SPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA----- 96 (147)
T ss_dssp CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHH-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccchHHHHHHHhhcC--CCCCCh---------HHHHHHHHHHhhhCcccc
Q 009702 92 GFFLYTAMGNEKANSYWEAEL--PPNYDR---------VGIENFIRAKYEEKRWVS 136 (528)
Q Consensus 92 g~~Ll~~gGN~kAN~iwEa~L--PpssD~---------~~re~FIRaKY~eKrF~~ 136 (528)
+||.++|+|||++. .+..+. ...++-|+++++.|.|..
T Consensus 97 -------~GN~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 97 -------GGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp -------CCHHHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred -------HhhHHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 99999999999864 233222 125777888888888864
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.2e-31 Score=239.31 Aligned_cols=89 Identities=40% Similarity=0.818 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCC-CCHHHHHHHhhcccccc
Q 009702 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSTACDCG 92 (528)
Q Consensus 14 r~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~-WT~eEV~~Mq~~~~~~g 92 (528)
..+++|+.|++.|+|++|+|||+++|+|+|+|||||||+.|+||||.||+|||+||||+||. |+++||++|+.
T Consensus 23 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~------ 96 (144)
T 2p57_A 23 EIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQV------ 96 (144)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHH------
T ss_pred HHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999996 99999999998
Q ss_pred cccccccchHHHHHHHhhcCCC
Q 009702 93 FFLYTAMGNEKANSYWEAELPP 114 (528)
Q Consensus 93 ~~Ll~~gGN~kAN~iwEa~LPp 114 (528)
+||.++|.|||++...
T Consensus 97 ------~GN~~an~~~e~~g~~ 112 (144)
T 2p57_A 97 ------GGNANATAFFRQHGCT 112 (144)
T ss_dssp ------CCHHHHHHHHHHTTCC
T ss_pred ------hCHHHHHHHHHHcCCC
Confidence 9999999999987543
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=9.8e-31 Score=243.07 Aligned_cols=110 Identities=38% Similarity=0.667 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhccc
Q 009702 11 LNARHRKILEGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTAC 89 (528)
Q Consensus 11 l~ar~ekiLr~Ll~~-PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~ 89 (528)
+++..+++|+.|++. |+|+.|||||+++|+|||++||||||+.|+||||.||+|||+||||+||.|++++|++|+.
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~--- 80 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDK--- 80 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHH---
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHh---
Confidence 567789999999985 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccchHHHHHHHhhcCCCCCChH-HHHHHHHHHhhhC
Q 009702 90 DCGFFLYTAMGNEKANSYWEAELPPNYDRV-GIENFIRAKYEEK 132 (528)
Q Consensus 90 ~~g~~Ll~~gGN~kAN~iwEa~LPpssD~~-~re~FIRaKY~eK 132 (528)
+||.++|.|||++........ +...-.-.+|+++
T Consensus 81 ---------~GN~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 81 ---------GGNKKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp ---------CCHHHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred ---------hCHHHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 999999999999876554432 2223344455554
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.96 E-value=3.3e-30 Score=250.53 Aligned_cols=120 Identities=38% Similarity=0.674 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHh
Q 009702 6 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85 (528)
Q Consensus 6 ~~SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq 85 (528)
..+.+.+++.+++|+.|++.|+|++|+|||+++|+|+|+|+|+|+|++|+|+||.||+|||+|||++||.|++++|..|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~ 99 (301)
T 2b0o_E 20 GHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99 (301)
T ss_dssp -------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHH
Confidence 34566677889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccccccccccccchHHHHHHHhhcCCCC--------CChHHHHHHHHHHhhhCccccC
Q 009702 86 STACDCGFFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 137 (528)
Q Consensus 86 ~~~~~~g~~Ll~~gGN~kAN~iwEa~LPps--------sD~~~re~FIRaKY~eKrF~~~ 137 (528)
. +||..+|.+||+.++.. .+...+++||+.||++++|..+
T Consensus 100 ~------------~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 100 N------------MGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp H------------CCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred H------------cCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 8 99999999999987642 3456799999999999998764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.4e-30 Score=267.61 Aligned_cols=119 Identities=38% Similarity=0.675 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhc
Q 009702 8 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQST 87 (528)
Q Consensus 8 SK~l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~ 87 (528)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|+||||+||+|||||||++||.|+++++++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~- 81 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN- 81 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccccccccccccchHHHHHHHhhcCCCC--------CChHHHHHHHHHHhhhCccccCC
Q 009702 88 ACDCGFFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 138 (528)
Q Consensus 88 ~~~~g~~Ll~~gGN~kAN~iwEa~LPps--------sD~~~re~FIRaKY~eKrF~~~~ 138 (528)
+||..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 82 -----------~GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 82 -----------MGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp -----------CCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred -----------HhhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 99999999999998642 34567999999999999998764
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=1e-29 Score=244.03 Aligned_cols=114 Identities=37% Similarity=0.723 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhcccccc
Q 009702 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACDCG 92 (528)
Q Consensus 13 ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~~g 92 (528)
++++++|+.|++.|+|+.|+|||+.+|.|+|++||+|||++|+||||.||+|||+|||++||.|+++++..|+.
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~------ 75 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN------ 75 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH------
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccchHHHHHHHhhcCCCC--------CChHHHHHHHHHHhhhCccccCC
Q 009702 93 FFLYTAMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 138 (528)
Q Consensus 93 ~~Ll~~gGN~kAN~iwEa~LPps--------sD~~~re~FIRaKY~eKrF~~~~ 138 (528)
+||..+|+|||+.++.. .+...+++||+.||+.++|..+.
T Consensus 76 ------~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 76 ------IGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp ------SCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred ------cCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999999999987532 34567899999999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-27 Score=237.17 Aligned_cols=91 Identities=41% Similarity=0.760 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhhcccc
Q 009702 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSTACD 90 (528)
Q Consensus 11 l~ar~ekiLr~Ll~~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~~~~~ 90 (528)
..++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||.||+|||+||||+||+|++++|++|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~---- 95 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA---- 95 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHH----
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccchHHHHHHHhhcCC
Q 009702 91 CGFFLYTAMGNEKANSYWEAELP 113 (528)
Q Consensus 91 ~g~~Ll~~gGN~kAN~iwEa~LP 113 (528)
+||.++|++||+...
T Consensus 96 --------~gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 96 --------GGNAKFREFLESQED 110 (329)
T ss_dssp --------CCHHHHHHHHHTCSS
T ss_pred --------hCcHHHHHHHHhcCC
Confidence 999999999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=83.58 E-value=0.44 Score=45.27 Aligned_cols=46 Identities=24% Similarity=0.678 Sum_probs=35.7
Q ss_pred CCCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhhcCCCcccccccccCCCCCHHHHHHHhh
Q 009702 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (528)
Q Consensus 25 ~PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISrVKSLsLD~WT~eEV~~Mq~ 86 (528)
.|.-..|+.||.....|.+...|.++|..|...+ .++.+++..|+.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~ 192 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRH 192 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHH
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHH
Confidence 4666799999998777899999999999885321 356777877765
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=60.29 E-value=2.3 Score=32.13 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 009702 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 26 PgNK~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 63 (528)
...+.|.+|+.. -|.|=.-..|..||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356889999986 57899888999999999988887664
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=57.19 E-value=3.4 Score=30.77 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 009702 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 29 K~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 63 (528)
+.|++|+.. -|.|=.-..|-.||-.|.-..|..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 57899999999999999888777653
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=52.39 E-value=4.3 Score=32.54 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 009702 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 25 ~PgNK~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 63 (528)
......|++|+.. -|.|=.-..|-.||-.|.-..+..++
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3467899999986 57999999999999999988887664
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=48.49 E-value=5 Score=32.35 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=32.3
Q ss_pred CCCCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 009702 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 26 PgNK~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 63 (528)
.....|++|+.. -|.|-.-..|-.||-.|.-..+..+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 68999999999999999888887664
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=45.37 E-value=5.2 Score=35.12 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.7
Q ss_pred CCCCcCCCCC-CCCeeecchhHHHHHHhhhhhhcCCC
Q 009702 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 28 NK~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 63 (528)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999986 68999888899999999887775554
No 21
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=34.34 E-value=12 Score=34.30 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCCCCcCCCCCCCC-eeecchhHHHHHHhhhhhh
Q 009702 26 PENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (528)
Q Consensus 26 PgNK~CADCGA~~P~-WASvn~GVFLC~~CSGIHR 59 (528)
..--+|.+||.+=|. -.-.--++-+|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456799999987331 1112225667999998764
No 22
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=33.29 E-value=4.7 Score=35.42 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=21.0
Q ss_pred CCCCcCCCCCCC-CeeecchhHHHHHHhhhhhh
Q 009702 28 NRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (528)
Q Consensus 28 NK~CADCGA~~P-~WASvn~GVFLC~~CSGIHR 59 (528)
--+|.+||.+=| .-.-.--++.+|+.|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 468999998733 11112234667999998764
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=31.81 E-value=7.5 Score=31.80 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=29.0
Q ss_pred CCCCCcCCCCC-CCCeee--cchhHHHHHHhhhhhhcCCC
Q 009702 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (528)
Q Consensus 27 gNK~CADCGA~-~P~WAS--vn~GVFLC~~CSGIHRsLG~ 63 (528)
....|.+|+.. -|.|=. -.-| .||-.|.-.+|..++
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999986 588988 6777 899999988887764
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=27.00 E-value=5.5 Score=35.06 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCCCCcCCCCCCCC-eeecchhHHHHHHhhhh
Q 009702 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGI 57 (528)
Q Consensus 27 gNK~CADCGA~~P~-WASvn~GVFLC~~CSGI 57 (528)
+...|.+||..... |..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999986433 44569999999999865
No 25
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=24.91 E-value=19 Score=37.13 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=24.8
Q ss_pred CCCCCCcCCCCCCCCeeecchhHHHHHHhhhhhh
Q 009702 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (528)
Q Consensus 26 PgNK~CADCGA~~P~WASvn~GVFLC~~CSGIHR 59 (528)
..+..|.=||..... ..||++.|..|.++.|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346789999987654 4899999999999876
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=24.84 E-value=13 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCcCCCCCCCCeeecchhHHHHHHhhhhhh
Q 009702 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (528)
Q Consensus 27 gNK~CADCGA~~P~WASvn~GVFLC~~CSGIHR 59 (528)
|++.|.=||.... ...||++.|..|.++-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4788999997654 45899999999999876
Done!