BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009703
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/518 (51%), Positives = 362/518 (69%), Gaps = 11/518 (2%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+ + +D
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQ-MHVKPETSSI 119
V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y V D +Q + + ET+ I
Sbjct: 61 -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVY--KRVMPDGKIQKLIITEETAKI 117
Query: 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALP 179
RP+ V AVLR+I F + Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A
Sbjct: 118 RPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKR 177
Query: 180 PSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239
PS I F PL +T+++TA ELM YK+D LK YLHIIEN PLYPV+YD N VLS+PPII
Sbjct: 178 PSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPII 237
Query: 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSY 299
NG HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE EVV+ +G+S+
Sbjct: 238 NGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSH 297
Query: 300 VYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT 359
+P+L+ V IN +G+ E + LL RM L +E GN I + +PPT
Sbjct: 298 TFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGN---QIEIEIPPT 354
Query: 360 RSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLT 416
R+D++H CD++ED AIAYGYNNI P + LN+ ++L+R ++A GFTE LT
Sbjct: 355 RADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALT 414
Query: 417 WILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475
+ LCS ++I+ L + AV + NP+T++F+V RTTL+PG+LKTI N+ P P+K+
Sbjct: 415 FALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474
Query: 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIY 513
+E+ D+V+ D DVGA R L A+Y N GFE+I+
Sbjct: 475 FEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIH 512
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
Length = 348
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 186/381 (48%), Gaps = 37/381 (9%)
Query: 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEE 61
P V + L +G+S++ EE+EDL ELDDV E +
Sbjct: 2 PKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEENG-----------------K 44
Query: 62 VIYKIEVP-ANRYDLLCLEGIAQALR-VFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSI 119
V +K++ NR DL EG+A+ ++ ++ +PKY + K S + ++V + I
Sbjct: 45 VYFKLDSKDTNRPDLWSAEGVARQIKWALGIEKGLPKYEV----KKSNVTVYVDEKLKDI 100
Query: 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALP 179
RPY V A++ + DE S + I LQ+K+ RRR VAIG D D ++ P Y+A
Sbjct: 101 RPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAE 160
Query: 180 PSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239
+ F PL + T +E++E ++ K ++Y H+I++ YP+L D VLS PPII
Sbjct: 161 KTE-KFAPLGYKEEXTLEEILEKHE---KGREYGHLIKDKQFYPLLIDSEGNVLSXPPII 216
Query: 240 NGAHSA-ITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRS 298
N + +T TKNVFI+ T L K + LN VT +E R ++ V VVY D
Sbjct: 217 NSEFTGRVTTDTKNVFIDVTGWKLEKVXLALNVXVTALAE---RGGKIRSVRVVYKDFEI 273
Query: 299 YVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPP 358
PDL+ EV L YI G+ L E+ LL + E S + P
Sbjct: 274 ET-PDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKXXYEVEISRG-----RAKLKYPA 327
Query: 359 TRSDVLHPCDVMEDVAIAYGY 379
R D+ H D++EDV IAYGY
Sbjct: 328 FRDDIXHARDILEDVLIAYGY 348
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 33/305 (10%)
Query: 224 VLYDQNRTVLSLPPIINGAHSAITLKTKNVFIEC------TATDLTKAKIVLNTMVTIFS 277
V+ D N+ L++ I G HS + +T+NV +EC + T + + +
Sbjct: 303 VIADHNKA-LAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYE 361
Query: 278 EYCKRKYQVEPVE------VVYADGRSYVYPDLS-------AYNMEVSLSYINHTIGVSL 324
Q + +E + G + D++ + + S ++ IG +
Sbjct: 362 RGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLIGHHI 421
Query: 325 EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPK 384
E+VT +L R+ G ++W + P R D+ D++E+VA YGYNNIP
Sbjct: 422 ADEQVTDILRRLGCEV---TEGKDEWQ--AVAPSWRFDMEIEEDLVEEVARVYGYNNIPD 476
Query: 385 RKPASVKPLALNEFSD--LMRLEIAMN--GFTEVLTWILCSSKEISTMLNRQTDESTAVV 440
+ + + +D L R++ +N G+ EV+T+ K + M++ + ++
Sbjct: 477 EPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPK-VQQMIHPGVE--ALLL 533
Query: 441 GNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLA 499
+P + + +R +L G+L T+ +N++ + ++I+E G + D + +G LA
Sbjct: 534 PSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLA 593
Query: 500 ALYCG 504
+ CG
Sbjct: 594 GVICG 598
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 45/280 (16%)
Query: 233 LSLPPIINGAHSAITLKTKNVFIECTATD-----LTKAKIVLNTMVT------IFSEY-- 279
++L ++ G S +T +T NV IE D T ++ L + + I +E+
Sbjct: 319 IALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVD 378
Query: 280 ------CKRKYQVEPVEVVY-----ADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEE 328
C ++ EV+ D S+V P ++++ +N TIG +L +E
Sbjct: 379 EAVDRACYLLQELASGEVLQDRVSSGDLGSFVTP------IDITAEKVNKTIGFNLSNDE 432
Query: 329 VTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA 388
+ S+ QL E + G + V VP R D+ D++E+VA YGY+ IP P
Sbjct: 433 IQSIFR--QLGFETTLKGET---LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPV 487
Query: 389 SVKPLALNEFSD------LMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGN 442
+ E +D ++ + G + +T+ L S ++ + ++
Sbjct: 488 -FGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLM-- 544
Query: 443 PRTSDFEVVRTTLMPGILKTIGHN-KDHPKPIKIYEVGDV 481
P + +R +L+P +++ +N K +++YE+G V
Sbjct: 545 PMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRV 584
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 120/280 (42%), Gaps = 45/280 (16%)
Query: 233 LSLPPIINGAHSAITLKTKNVFIECTATD-----LTKAKIVLNTMVT------IFSEY-- 279
++L ++ G S +T +T NV IE D T ++ L + + I +E+
Sbjct: 315 IALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVD 374
Query: 280 ------CKRKYQVEPVEVVY-----ADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEE 328
C ++ EV+ D S+V P ++++ +N TIG +L +E
Sbjct: 375 EAVDRACYLLQELASGEVLQDRVSSGDLGSFVTP------IDITAEKVNKTIGFNLSNDE 428
Query: 329 VTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA 388
+ S+ QL E + G + V VP R D+ D++E+VA YGY+ IP P
Sbjct: 429 IQSIFR--QLGFETTLKGET---LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPV 483
Query: 389 SVKPLALNEFSD------LMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGN 442
+ E +D ++ + G + +T+ L S ++ + ++
Sbjct: 484 -FGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLM-- 540
Query: 443 PRTSDFEVVRTTLMPGILKTIGHN-KDHPKPIKIYEVGDV 481
P + +R +L+P +++ +N K +++YE+G V
Sbjct: 541 PMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRV 580
>pdb|3IG2|A Chain A, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|B Chain B, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|C Chain C, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|D Chain D, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
Length = 213
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTL 455
N+ +L+ ++ GF E+L L + + + + ++ NP ++D R TL
Sbjct: 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVXLL-NPLSADLNCXRQTL 65
Query: 456 MPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKK 488
+ G L++I HN + +K +E G+ D +K
Sbjct: 66 LFGGLESIAHNANRKNADLKFFEFGNCYHFDAEK 99
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 315 YINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVA 374
Y N +G S E ++L R+ E V P R D+ D++E+VA
Sbjct: 410 YANRLLGTSYPEAEQIAILKRLGCRVEGEGP-----TYRVTPPSHRLDLRLEEDLVEEVA 464
Query: 375 IAYGYNNIPKRKPASVKPLALNE-----FSDLMRLEIAMNG--FTEVLTWILCSSKEIST 427
GY IP PA P N + RL ++G F EV T+ ++
Sbjct: 465 RIQGYETIPLALPAFF-PAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR 523
Query: 428 MLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK--IYEVGDV 481
+ D ++ NP + +RT L PG+++ + N D +P + ++EVG V
Sbjct: 524 F---RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRV 576
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 315 YINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVA 374
Y N +G S E ++L R+ E V P R D+ D++E+VA
Sbjct: 410 YANRLLGTSYPEAEQIAILKRLGCRVEGEGP-----TYRVTPPSHRLDLRLEEDLVEEVA 464
Query: 375 IAYGYNNIPKRKPASVKPLALNE-----FSDLMRLEIAMNG--FTEVLTWILCSSKEIST 427
GY IP PA P N + RL ++G F EV T+ ++
Sbjct: 465 RIEGYETIPLALPAFF-PAPDNRAVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR 523
Query: 428 MLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK--IYEVGDV 481
+ D ++ NP + +RT L PG+++ + N D +P + ++EVG V
Sbjct: 524 F---RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRV 576
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 193 DFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLS 234
D T DE +EF+K+ +K+ L ++ + L V Q T LS
Sbjct: 766 DMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLS 807
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,373,473
Number of Sequences: 62578
Number of extensions: 632439
Number of successful extensions: 1495
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 21
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)