Query 009703
Match_columns 528
No_of_seqs 225 out of 1419
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02265 probable phenylalanyl 100.0 2E-122 4E-127 1018.1 53.2 518 1-521 1-530 (597)
2 KOG2472 Phenylalanyl-tRNA synt 100.0 3E-116 7E-121 901.0 27.4 506 1-517 1-511 (578)
3 TIGR00471 pheT_arch phenylalan 100.0 7E-103 1E-107 857.6 49.1 489 1-526 1-498 (551)
4 PRK09616 pheT phenylalanyl-tRN 100.0 5E-100 1E-104 835.9 48.9 488 1-527 1-497 (552)
5 CHL00192 syfB phenylalanyl-tRN 100.0 2.6E-84 5.6E-89 726.9 40.3 465 5-526 2-537 (704)
6 PRK00629 pheT phenylalanyl-tRN 100.0 6.7E-79 1.4E-83 693.2 40.4 426 60-526 153-630 (791)
7 TIGR00472 pheT_bact phenylalan 100.0 5.5E-79 1.2E-83 695.0 39.3 426 60-522 155-632 (798)
8 COG0072 PheT Phenylalanyl-tRNA 100.0 1.4E-73 3E-78 634.0 31.8 431 60-527 12-495 (650)
9 cd00769 PheRS_beta_core Phenyl 99.9 1.8E-23 3.9E-28 201.6 13.1 117 396-518 3-132 (198)
10 PF03483 B3_4: B3/4 domain; I 99.9 7.2E-22 1.6E-26 186.7 9.8 135 119-281 1-174 (174)
11 PF03484 B5: tRNA synthetase B 99.8 1.1E-20 2.4E-25 151.9 6.7 70 306-379 1-70 (70)
12 TIGR02367 PylS pyrrolysyl-tRNA 99.8 7E-20 1.5E-24 191.5 13.7 150 372-526 208-376 (453)
13 cd00496 PheRS_alpha_core Pheny 99.8 8.2E-20 1.8E-24 178.8 10.5 119 393-518 1-126 (218)
14 smart00874 B5 tRNA synthetase 99.8 1.4E-19 3E-24 145.8 8.0 70 307-379 2-71 (71)
15 TIGR00468 pheS phenylalanyl-tR 99.7 2E-16 4.3E-21 161.5 13.1 128 391-522 70-204 (294)
16 PF01409 tRNA-synt_2d: tRNA sy 99.6 8.8E-16 1.9E-20 152.6 10.7 135 391-527 15-164 (247)
17 smart00873 B3_4 B3/4 domain. T 99.6 1.1E-15 2.4E-20 143.8 10.6 143 120-280 1-173 (174)
18 PRK09537 pylS pyrolysyl-tRNA s 99.5 3.5E-13 7.7E-18 141.8 12.0 131 391-526 202-340 (417)
19 cd00768 class_II_aaRS-like_cor 99.5 1.4E-13 3E-18 132.4 8.2 121 396-521 3-134 (211)
20 COG0072 PheT Phenylalanyl-tRNA 99.4 1.6E-14 3.4E-19 161.8 -2.0 217 1-255 1-220 (650)
21 PRK00488 pheS phenylalanyl-tRN 99.4 1.9E-12 4.1E-17 132.9 13.0 119 391-517 106-230 (339)
22 PRK06253 O-phosphoseryl-tRNA s 99.0 1.2E-09 2.6E-14 117.0 11.6 130 391-526 45-268 (529)
23 TIGR00470 sepS O-phosphoseryl- 98.8 2E-08 4.4E-13 106.0 12.0 136 391-527 45-268 (533)
24 PRK04172 pheS phenylalanyl-tRN 98.8 4.1E-08 9E-13 107.3 12.7 135 391-527 231-410 (489)
25 COG3382 Solo B3/4 domain (OB-f 98.7 1.6E-07 3.5E-12 90.9 11.4 119 140-282 83-218 (229)
26 smart00874 B5 tRNA synthetase 98.5 5.6E-07 1.2E-11 72.2 7.4 70 1-90 1-70 (71)
27 PTZ00326 phenylalanyl-tRNA syn 98.1 2.8E-05 6E-10 84.2 13.2 137 391-527 227-417 (494)
28 COG0016 PheS Phenylalanyl-tRNA 98.0 4.1E-05 8.9E-10 78.9 11.4 142 372-517 86-237 (335)
29 PLN02853 Probable phenylalanyl 98.0 8E-05 1.7E-09 80.3 13.6 127 391-517 219-387 (492)
30 PF03484 B5: tRNA synthetase B 97.8 6.7E-05 1.5E-09 60.2 7.3 67 3-90 3-69 (70)
31 PF00587 tRNA-synt_2b: tRNA sy 96.8 0.0024 5.1E-08 60.1 6.3 129 396-526 3-149 (173)
32 PRK00037 hisS histidyl-tRNA sy 96.8 0.005 1.1E-07 66.0 9.0 127 393-522 19-154 (412)
33 cd00773 HisRS-like_core Class 96.7 0.0099 2.1E-07 59.8 10.1 126 395-522 5-138 (261)
34 PRK12421 ATP phosphoribosyltra 96.5 0.019 4.1E-07 61.4 11.0 129 395-525 24-161 (392)
35 PF13393 tRNA-synt_His: Histid 96.4 0.019 4.1E-07 59.0 10.0 123 396-521 14-144 (311)
36 TIGR00442 hisS histidyl-tRNA s 96.4 0.023 5E-07 60.6 10.7 129 393-522 15-153 (397)
37 PLN02530 histidine-tRNA ligase 96.1 0.03 6.5E-07 61.6 10.1 126 395-522 87-220 (487)
38 CHL00201 syh histidine-tRNA sy 96.1 0.043 9.3E-07 59.4 11.1 127 395-522 21-158 (430)
39 PRK12420 histidyl-tRNA synthet 96.0 0.045 9.7E-07 59.1 10.7 130 395-525 21-158 (423)
40 cd00670 Gly_His_Pro_Ser_Thr_tR 95.7 0.038 8.3E-07 54.2 8.2 131 395-526 5-153 (235)
41 PLN02788 phenylalanine-tRNA sy 95.5 0.13 2.7E-06 55.0 11.7 130 379-518 47-205 (402)
42 PRK12292 hisZ ATP phosphoribos 95.4 0.073 1.6E-06 56.8 9.5 126 396-522 21-154 (391)
43 TIGR00443 hisZ_biosyn_reg ATP 95.1 0.11 2.4E-06 53.8 9.5 125 395-522 11-143 (314)
44 TIGR00471 pheT_arch phenylalan 95.0 0.068 1.5E-06 59.7 7.9 71 2-94 278-348 (551)
45 PRK09616 pheT phenylalanyl-tRN 94.4 0.1 2.2E-06 58.4 7.6 71 2-94 275-345 (552)
46 PRK00629 pheT phenylalanyl-tRN 94.2 0.11 2.4E-06 60.6 7.6 72 2-94 401-472 (791)
47 PRK12293 hisZ ATP phosphoribos 94.1 0.25 5.4E-06 50.5 9.0 118 396-525 23-145 (281)
48 PRK12295 hisZ ATP phosphoribos 93.8 0.66 1.4E-05 49.3 12.0 123 394-522 6-136 (373)
49 TIGR00409 proS_fam_II prolyl-t 93.7 0.46 9.9E-06 53.3 11.0 128 394-525 49-194 (568)
50 PRK09194 prolyl-tRNA synthetas 93.7 0.43 9.3E-06 53.5 10.9 131 394-526 49-195 (565)
51 PLN02265 probable phenylalanyl 93.7 0.15 3.1E-06 57.6 7.1 71 3-92 311-381 (597)
52 PLN02972 Histidyl-tRNA synthet 93.1 0.71 1.5E-05 53.1 11.3 122 396-522 345-474 (763)
53 TIGR00472 pheT_bact phenylalan 93.0 0.21 4.6E-06 58.3 7.3 70 2-93 406-475 (798)
54 PRK12305 thrS threonyl-tRNA sy 93.0 0.29 6.3E-06 54.9 8.1 127 394-522 208-350 (575)
55 KOG2784 Phenylalanyl-tRNA synt 93.0 0.51 1.1E-05 49.1 9.0 125 391-517 210-378 (483)
56 cd00771 ThrRS_core Threonyl-tR 92.8 0.5 1.1E-05 48.6 9.0 125 395-522 33-173 (298)
57 PLN02908 threonyl-tRNA synthet 92.8 0.33 7.2E-06 55.7 8.3 130 393-525 322-467 (686)
58 PRK00413 thrS threonyl-tRNA sy 92.3 0.53 1.2E-05 53.5 9.2 130 394-525 272-418 (638)
59 CHL00192 syfB phenylalanyl-tRN 92.3 0.36 7.9E-06 55.5 7.8 73 2-94 303-384 (704)
60 TIGR00418 thrS threonyl-tRNA s 92.2 0.41 9E-06 53.6 8.0 127 394-522 202-344 (563)
61 COG2024 Phenylalanyl-tRNA synt 92.2 0.24 5.1E-06 51.7 5.4 136 391-527 45-268 (536)
62 PRK14799 thrS threonyl-tRNA sy 92.2 0.42 9.2E-06 53.3 7.9 145 315-488 110-265 (545)
63 cd00772 ProRS_core Prolyl-tRNA 92.0 1.2 2.5E-05 45.1 10.1 132 393-525 33-185 (264)
64 PRK12444 threonyl-tRNA synthet 91.9 0.53 1.1E-05 53.6 8.5 130 394-525 276-420 (639)
65 cd00779 ProRS_core_prok Prolyl 91.2 0.46 1E-05 47.7 6.4 129 395-525 34-178 (255)
66 smart00873 B3_4 B3/4 domain. T 90.2 0.12 2.5E-06 48.3 0.9 81 158-254 49-142 (174)
67 COG0124 HisS Histidyl-tRNA syn 89.8 1.7 3.7E-05 47.0 9.4 130 395-525 21-161 (429)
68 cd00770 SerRS_core Seryl-tRNA 89.3 1 2.2E-05 46.3 7.0 127 395-526 55-200 (297)
69 PRK12325 prolyl-tRNA synthetas 89.1 0.98 2.1E-05 49.1 7.2 90 393-485 48-142 (439)
70 cd00669 Asp_Lys_Asn_RS_core As 88.1 2.9 6.2E-05 42.4 9.3 107 396-517 5-112 (269)
71 PF11734 TilS_C: TilS substrat 86.2 2 4.4E-05 34.6 5.6 63 183-255 10-72 (74)
72 cd00774 GlyRS-like_core Glycyl 83.0 3.9 8.5E-05 41.0 7.4 83 394-486 34-121 (254)
73 cd00778 ProRS_core_arch_euk Pr 82.3 3.2 6.9E-05 41.8 6.4 94 394-487 34-134 (261)
74 PRK12294 hisZ ATP phosphoribos 81.0 6.2 0.00013 40.2 7.9 107 395-512 10-119 (272)
75 PRK06462 asparagine synthetase 76.9 10 0.00022 39.8 8.3 82 396-487 34-117 (335)
76 cd00777 AspRS_core Asp tRNA sy 76.2 16 0.00034 37.3 9.3 107 396-517 5-112 (280)
77 PF00152 tRNA-synt_2: tRNA syn 75.2 13 0.00029 38.6 8.7 104 397-515 27-135 (335)
78 PRK03991 threonyl-tRNA synthet 72.1 12 0.00026 42.6 7.8 91 395-487 230-324 (613)
79 cd00775 LysRS_core Lys_tRNA sy 70.7 26 0.00057 36.5 9.6 106 396-517 12-119 (329)
80 PRK09350 poxB regulator PoxA; 68.5 11 0.00024 38.9 6.2 79 396-487 9-93 (306)
81 PF13592 HTH_33: Winged helix- 65.5 5.8 0.00013 30.5 2.6 28 314-341 12-39 (60)
82 TIGR00408 proS_fam_I prolyl-tR 65.4 8.3 0.00018 42.4 4.7 93 394-486 40-139 (472)
83 PTZ00417 lysine-tRNA ligase; P 64.2 26 0.00056 39.6 8.4 78 396-487 257-336 (585)
84 PRK08661 prolyl-tRNA synthetas 63.9 8.8 0.00019 42.2 4.6 95 393-487 45-146 (477)
85 PLN02678 seryl-tRNA synthetase 63.6 31 0.00068 37.6 8.6 124 396-525 178-325 (448)
86 PRK03932 asnC asparaginyl-tRNA 63.6 33 0.00071 37.5 8.9 77 396-486 137-221 (450)
87 TIGR00469 pheS_mito phenylalan 62.3 17 0.00038 39.5 6.3 91 391-486 40-147 (460)
88 PRK00484 lysS lysyl-tRNA synth 60.1 48 0.001 36.7 9.5 104 397-517 177-283 (491)
89 TIGR00462 genX lysyl-tRNA synt 59.8 13 0.00028 38.4 4.7 81 395-487 4-88 (304)
90 PLN02837 threonine-tRNA ligase 59.3 12 0.00026 42.5 4.8 93 393-487 248-344 (614)
91 KOG2472 Phenylalanyl-tRNA synt 59.0 16 0.00034 40.0 5.2 65 5-90 310-374 (578)
92 PTZ00385 lysyl-tRNA synthetase 57.9 43 0.00094 38.3 8.7 78 396-487 237-316 (659)
93 PF09840 DUF2067: Uncharacteri 57.5 1.1E+02 0.0023 29.6 10.1 102 246-378 29-130 (190)
94 TIGR00414 serS seryl-tRNA synt 56.1 19 0.00042 38.9 5.4 127 395-525 176-320 (418)
95 KOG0556 Aspartyl-tRNA syntheta 55.6 15 0.00032 39.2 4.2 88 397-505 233-321 (533)
96 PRK00960 seryl-tRNA synthetase 55.2 40 0.00086 37.5 7.7 125 397-522 228-397 (517)
97 PRK12445 lysyl-tRNA synthetase 55.0 40 0.00086 37.4 7.7 103 397-517 189-295 (505)
98 cd00776 AsxRS_core Asx tRNA sy 54.9 49 0.0011 34.4 8.1 75 396-486 28-103 (322)
99 TIGR00499 lysS_bact lysyl-tRNA 54.8 39 0.00085 37.4 7.7 76 396-487 176-255 (496)
100 PRK12820 bifunctional aspartyl 54.1 55 0.0012 37.8 8.8 107 396-517 160-267 (706)
101 PLN02850 aspartate-tRNA ligase 52.5 40 0.00086 37.7 7.3 75 397-486 230-305 (530)
102 PTZ00401 aspartyl-tRNA synthet 52.3 29 0.00064 38.9 6.2 75 397-486 218-293 (550)
103 PRK05431 seryl-tRNA synthetase 49.1 27 0.00058 37.9 5.1 126 396-525 174-318 (425)
104 TIGR00459 aspS_bact aspartyl-t 47.8 95 0.0021 35.2 9.3 107 396-517 142-249 (583)
105 PRK05159 aspC aspartyl-tRNA sy 47.2 89 0.0019 34.0 8.8 76 396-486 140-216 (437)
106 PLN02502 lysyl-tRNA synthetase 45.6 67 0.0015 36.1 7.7 76 397-486 234-311 (553)
107 COG0441 ThrS Threonyl-tRNA syn 45.2 37 0.00081 38.3 5.6 94 391-487 219-316 (589)
108 PRK00476 aspS aspartyl-tRNA sy 42.7 1.2E+02 0.0025 34.5 9.1 106 396-517 145-252 (588)
109 TIGR00458 aspS_arch aspartyl-t 42.0 1E+02 0.0022 33.5 8.2 75 397-486 138-213 (428)
110 COG3705 HisZ ATP phosphoribosy 38.6 50 0.0011 35.4 5.1 124 395-522 20-151 (390)
111 TIGR00457 asnS asparaginyl-tRN 36.9 1.4E+02 0.0031 32.6 8.5 77 396-486 140-224 (453)
112 TIGR00268 conserved hypothetic 35.6 49 0.0011 33.0 4.3 90 322-414 142-242 (252)
113 PRK02983 lysS lysyl-tRNA synth 33.6 1.6E+02 0.0034 36.1 8.8 76 397-487 775-853 (1094)
114 PLN02903 aminoacyl-tRNA ligase 33.3 2E+02 0.0044 33.0 9.1 107 396-517 207-315 (652)
115 PRK04173 glycyl-tRNA synthetas 31.7 2.3E+02 0.0049 31.1 9.0 31 394-424 40-72 (456)
116 PLN02320 seryl-tRNA synthetase 27.8 1.3E+02 0.0028 33.5 6.2 125 396-525 237-381 (502)
117 TIGR00415 serS_MJ seryl-tRNA s 24.8 3.8E+02 0.0082 30.0 9.0 117 408-525 240-400 (520)
118 COG0017 AsnS Aspartyl/asparagi 22.3 1.6E+02 0.0034 32.1 5.5 29 396-424 138-166 (435)
119 PF09409 PUB: PUB domain; Int 22.3 1.9E+02 0.004 23.7 4.9 61 261-342 2-62 (87)
120 KOG1936 Histidyl-tRNA syntheta 21.4 2.7E+02 0.0058 30.4 6.8 152 365-522 29-209 (518)
121 COG4427 Uncharacterized protei 20.9 78 0.0017 32.1 2.6 26 454-482 126-151 (350)
122 PRK02220 4-oxalocrotonate taut 20.5 30 0.00065 26.1 -0.3 55 1-80 1-55 (61)
123 PLN02221 asparaginyl-tRNA synt 20.4 6.7E+02 0.015 28.4 10.2 28 396-423 175-202 (572)
124 COG1190 LysU Lysyl-tRNA synthe 20.0 89 0.0019 34.5 3.0 75 397-485 185-261 (502)
No 1
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=1.8e-122 Score=1018.13 Aligned_cols=518 Identities=78% Similarity=1.222 Sum_probs=469.2
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccc---cCCCCCCceEEEEecCCCcccccc
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC 77 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls 77 (528)
||||+|++++|++++|+++|++||+++||+||+|+|++++|+++.++|+|.++ ++.++++|.+++||+|||||||||
T Consensus 1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls 80 (597)
T PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC 80 (597)
T ss_pred CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence 99999999999999999999999999999999999999877777778888764 235678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCc
Q 009703 78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (528)
Q Consensus 78 ~~GiARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~ 157 (528)
++||||+|++++|....|.|.+.........++.|+.++.+.||||+|++++||++++++|+||+|||+|||+++||+|+
T Consensus 81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~ 160 (597)
T PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160 (597)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence 99999999999997447777653221112356777656678999999999999999999999999999999999999988
Q ss_pred EeehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCC
Q 009703 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (528)
Q Consensus 158 ~VdIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslag 237 (528)
+|||||||+|+|++||.|+++++++++|+||+++++|+++||++.+.++++|++|+|||++.+.||||+|++|.|+||||
T Consensus 161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag 240 (597)
T PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240 (597)
T ss_pred EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence 99999999999999999999998778999999999999999999999999999999999999999999999987799999
Q ss_pred cccCCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHH
Q 009703 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (528)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~ 317 (528)
||||++|+||++|||||||||++|++++..||++++++|+++|+++|++++|.+++..|....+|.+.++.+.++.++|+
T Consensus 241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~ 320 (597)
T PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320 (597)
T ss_pred eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999988899988887656667789888899999999999
Q ss_pred hhcCCCCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCC
Q 009703 318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL 393 (528)
Q Consensus 318 ~~LG~~l~~~~i~~~L~~lg~~~~~~~-~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~ 393 (528)
++||++|+.++|+++|++|||.+...+ ++ +. |.|+||+||.||+|+|||||||||+|||||||+++|... ..+
T Consensus 321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~ 397 (597)
T PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397 (597)
T ss_pred HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence 999999999999999999999986521 11 35 999999999999999999999999999999999998643 678
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
+.+++.+++|+.|+++||+|++||+|+|+++++.+|+...++..+| |+||+|+|+++||+|||||||+++++|+|+++|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 8899999999999999999999999999988777776543222579 999999999999999999999999999999999
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHHh----cCC
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVLT----KNF 521 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~~----~~~ 521 (528)
+|+||||+||+++.+.+.+++|.++||++++|+.++|+++||+|++ +|+
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i 530 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGI 530 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCC
Confidence 9999999999887654566689999999999999999999999984 566
No 2
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-116 Score=900.99 Aligned_cols=506 Identities=59% Similarity=0.988 Sum_probs=483.9
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||||+|.++.|++++|++|+++||+++||.||+|+++++.++.++.+|++...+.. .++.+.++|++++||+|++|++|
T Consensus 1 MpTI~v~k~~l~~~LGk~yt~~ef~elcfeFgleldeit~e~a~~~ke~~~~~~~g-ane~~~ykidipANrydllC~eg 79 (578)
T KOG2472|consen 1 MPTISVKKDHLFRALGKSYTDREFDELCFEFGLELDEITTEKAFAMKEQGSLVEAG-SNEEVRYKIDIPANRYDLLCLEG 79 (578)
T ss_pred CCceEecHHHHHHHhccccchhhhhhhhhhhccccccchhHHHhhhhhhcchhhcc-CCcceeeehhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999999877644 77889999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccC-CCCCCCHHHHHHHHHhcCCCCCcEe
Q 009703 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFD-EASYNSFIDLQDKLHQNICRRRTLV 159 (528)
Q Consensus 81 iARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~-~~~~~s~~~lQekL~~~~~r~r~~V 159 (528)
++++++.|......|.|+....++....++.|++++.++|||++|+|+|||+++ +.+|+|+|+||+|||+++||+|.+|
T Consensus 80 l~qalrvf~~~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~dsy~sFIdlQdKLHqnicrnRtLv 159 (578)
T KOG2472|consen 80 LAQALRVFPRETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDSYKSFIDLQDKLHQNICRNRTLV 159 (578)
T ss_pred HHHHHHhccccCCCCcceeeccccccceEEEEcccccccchHHHHHHHhcCccCchhhhHhHHhHHHHHHHHHHhhcccc
Confidence 999999998877889999876544445789999999999999999999999999 7789999999999999999999999
Q ss_pred ehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcc
Q 009703 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (528)
Q Consensus 160 dIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIi 239 (528)
+||+||||++.+||.|.+..|++|+|+||++++++++.++++.|..+.++++|+|||++++.||||.|++|.++|+||||
T Consensus 160 AiGTHDLDt~qgPf~Y~Al~peei~f~PLNqtre~~~~eL~~~y~~d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIi 239 (578)
T KOG2472|consen 160 AIGTHDLDTIQGPFEYEALPPEEIKFKPLNQTREVTASELMSFYKRDMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPII 239 (578)
T ss_pred ccccccchhccCCeeeeeeChhhcCcccchhhhccccccccccccCccchhhhehhhcCCCccceeeCCCCceEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhh
Q 009703 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (528)
Q Consensus 240 gg~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~ 319 (528)
||++|+||.+|+|||||||++|..++..+++.++++|+++|..++++++|+|+++.|....||.+..+...++.++||..
T Consensus 240 Nsd~Skitl~TknIfievTaTd~~ka~ivl~~~v~lfS~~c~~~ftiepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~ 319 (578)
T KOG2472|consen 240 NSDHSKITLNTKNIFIEVTATDFTKAKIVLNTIVTLFSQQCFLKFTIEPVEIVCGEGGSILYPQLANRSMTMSIQAINFA 319 (578)
T ss_pred CcccceeeeccceEEEEeeeccchhhhcccceeeehhhhhhccCccccceEEEcCCCcEEECccccCcceeeehhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999987888899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhH
Q 009703 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (528)
Q Consensus 320 LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (528)
+|++++.++++.+|.||.++++..+++ . ++|.||+.|.||+|.|||+||+|++||||||+.++|.++ ++.|.+
T Consensus 320 ~g~~l~~~~~~~~l~RM~L~a~v~~~~--~--l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~~plN 395 (578)
T KOG2472|consen 320 IGLNLTIEEQAYYLTRMYLKAKVIGNG--N--LEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKPFPLN 395 (578)
T ss_pred hccCCCHHHHHHHHhhhheeeEecCCC--c--eEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCccchH
Confidence 999999999999999999999887653 5 899999999999999999999999999999999999986 889999
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
++.+.+|..++.+||+|++||.|||.++ + ..++..+| |.||+|-||+++|+||+||||++++.|.+++.|+|+
T Consensus 396 kl~d~lR~e~a~ag~~E~l~~~LcS~de-----~-~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP~kl 469 (578)
T KOG2472|consen 396 KLTDILRIEVAAAGFTEALTFTLCSRDE-----N-VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLPIKL 469 (578)
T ss_pred HHHHHHHHHHHHhhhhhheeeeeecccc-----C-CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCceeE
Confidence 9999999999999999999999999998 2 23356899 999999999999999999999999999999999999
Q ss_pred EEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
||++||+++|.+.++|++|+||||+++||+++||+.|||+|+
T Consensus 470 FEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld 511 (578)
T KOG2472|consen 470 FEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLD 511 (578)
T ss_pred EEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999998
No 3
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=6.8e-103 Score=857.57 Aligned_cols=489 Identities=36% Similarity=0.586 Sum_probs=418.8
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||||++++++|++++ ...++++|.+.|+..|+|+|+++++ ..+++||+|||||||||++|
T Consensus 1 Mp~i~~~~~~l~~~l-~~~~~~~l~~~l~~~~~eve~~~~~-------------------~~i~eieiTpNR~D~lS~~G 60 (551)
T TIGR00471 1 MPTVTVYKDDLEDLL-IGTDRDEILEELPMMGDEIEGFDEE-------------------SPEIKVEFNPNRPDLLSVEG 60 (551)
T ss_pred CCEEEEcHHHHHHHh-cCCCHHHHHHHhcccccccccccCC-------------------cceEEEEcCCCCchhhhHHH
Confidence 999999999999998 6678899999999999998876432 14799999999999999999
Q ss_pred HHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCcEe
Q 009703 81 IAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (528)
Q Consensus 81 iARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~~V 159 (528)
|||||++++|.. ..|.+... .....+.|+..+.+.||||+|++++||++++++++||+|||+|||++++|+++.+
T Consensus 61 iARel~a~~~~~~~~p~~~~~----~~~~~v~v~~~~~~~cp~y~~~vi~gv~~~~~~~~Sp~wlq~rL~~~g~R~in~l 136 (551)
T TIGR00471 61 LARSLRGYLGIEKGLKSYDSK----KGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKV 136 (551)
T ss_pred HHHHHHHHhCCCCCCcceecC----CCceEEEECCcccccCCeEEEEEEeCCccChhHHhhHHHHHHHHHHhhCccccee
Confidence 999999999964 55644311 1134455554333789999999999999998888899999999999999987778
Q ss_pred ehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcc
Q 009703 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (528)
Q Consensus 160 dIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIi 239 (528)
+|+.||+|||.+|+.|++.++++++|+||++.++++.+++++ +|+++.+|+||+++.+.+|||+|++++|+||||||
T Consensus 137 ~ihafD~dki~~~i~vr~~a~~ge~f~~Ld~~~~L~~~~~~~---~~~~~~~y~~l~~~~~~~~vI~D~~~~~lslaGIm 213 (551)
T TIGR00471 137 AIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILE---EHPKGIRYAHIIEDSDKFPLILDSKDDVLSMPPII 213 (551)
T ss_pred eEEeccHHhCCCCeEEEEECCCCCEEEECCCCCccCHHHHHh---hCcccchhhhhhcCCCceeEEEeCCCCEEeeCCcc
Confidence 999999999999999997777778999999999999999888 89999999999999999999999966799999999
Q ss_pred cCCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhh
Q 009703 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (528)
Q Consensus 240 gg~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~ 319 (528)
||++|+|+++||||||||||+|++.+..|+++++++++++|++.. ....+... +....+|...++.|.++.++|+++
T Consensus 214 gg~~s~V~~~T~nIllE~Ag~D~~~~~~al~~a~~li~~~~~g~~--~~~~v~~~-~~~~~~p~~~~~~i~~~~~~i~~~ 290 (551)
T TIGR00471 214 NSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRI--TVVEVERP-DEHLGQPNLAPRFMEVSVEYINSL 290 (551)
T ss_pred CCCceEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCCce--eEEEEEEC-CCcccCCCCccceEEecHHHHHHH
Confidence 999999999999999999999999999999999999999997643 33222221 112234556778999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhH
Q 009703 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (528)
Q Consensus 320 LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (528)
||++++.+++.++|++|||.+...+ +. |.|+||+||.||+|++||||||||+|||||||+++|... ..++.+
T Consensus 291 lG~~l~~~ei~~iL~~Lg~~v~~~~---~~--~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~~~~~~~~~~~ 365 (551)
T TIGR00471 291 LGLNLSADEIAHSLKKMRLDAVQSD---EK--LKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLN 365 (551)
T ss_pred hCCCCCHHHHHHHHHHhCCCeEecC---Cc--EEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCccccCCcChHH
Confidence 9999999999999999999996543 25 999999999999999999999999999999999888632 567788
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
++.+++|+.|+++||+|++||+|+|++++++.++... ++.| |+||+|+|+++||+||+||||+++++|+++..++++
T Consensus 366 ~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~--~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 366 KVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIED--NNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCC--CCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 8999999999999999999999999987645554432 3469 999999999999999999999999999966678999
Q ss_pred EEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCeeeee
Q 009703 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFTCELN 526 (528)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~~~~~ 526 (528)
||+|+||.++.+.+.+.++..++|++++|+..+|+++||+|+ .+|+++.|+
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l~i~~~~~ 498 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGIEYEIE 498 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCCceEEe
Confidence 999999987542222222337999999999899999999988 457766654
No 4
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=4.7e-100 Score=835.88 Aligned_cols=488 Identities=38% Similarity=0.629 Sum_probs=422.1
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||||++++++|++++|.++++++|.++|+.+|+|+|+. +|++++||+|||||||||++|
T Consensus 1 mp~~~~~~~~l~~~~~~~~~~~~l~~~l~~~G~e~~~~---------------------~D~ileieiTpNR~D~ls~~G 59 (552)
T PRK09616 1 MPVIRVNKDDLERLIGIDLEDDELEDLLPMLKCEVEEI---------------------EDDEIKIEFNPDRPDLLSVEG 59 (552)
T ss_pred CCEEEEcHHHHHHHHCCCCCHHHHHHHHHHcCCccccC---------------------CCceEEEEcCCCchhhhhHHH
Confidence 99999999999999999999999999999999999842 366999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCcEe
Q 009703 81 IAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (528)
Q Consensus 81 iARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~~V 159 (528)
||||||+++|.. ..|.+.+.. ...++.|+....+.||+|+|++++||+++++++++|+|||+|||++.|++|+.+
T Consensus 60 iARelaa~~~~~~~~p~~~~~~----~~~~v~v~~~~~~~cp~y~~~~i~~v~v~~s~~~~P~wlq~rL~~~~Gq~r~~~ 135 (552)
T PRK09616 60 LARALRGFLGIETGLPKYEVKD----SDVKVEVDEEVPEIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKV 135 (552)
T ss_pred HHHHHHHHhCCCCCCCceeecC----CceEEEECCCccccCCeEEEEEEECCccCHHHHHhHHHHHHHHHHHhccccccc
Confidence 999999999974 667554322 123455543233799999999999999997667789999999999999889999
Q ss_pred ehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcc
Q 009703 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (528)
Q Consensus 160 dIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIi 239 (528)
.||.||+|+|.+|+.|+..++++ .|+||++++++++++++. +|.++++|+||+.+.+.++||+|++|+++|+||||
T Consensus 136 pi~~~Dldki~~~i~~r~a~~~e-~f~~L~~~~~~~~~e~~~---~~~~~~~y~~L~~~~~~~~vI~D~~~~~lsl~gi~ 211 (552)
T PRK09616 136 AIGIHDLDKIKPPIYYKAVDPDE-KFVPLGFDEEMTLREILE---KHPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPPII 211 (552)
T ss_pred eeEeecHHHCCCCeEEEEeCCCC-eEeeCCCCceeCHHHHHh---hCcccceehhhccCCCCcceEEcCCCCEEecCCcc
Confidence 99999999999999999988766 599999988899999976 89999999999987667899999998899999999
Q ss_pred cCCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhh
Q 009703 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (528)
Q Consensus 240 gg~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~ 319 (528)
||++|+|+++||||||||||+|++.+..|+++++.++.++| + ++.++...++ +....+|...++.|.++.++|+++
T Consensus 212 ~~~~s~vt~~Tkni~lE~ag~d~~~~~~al~~~~~ll~~~~-g--~v~~~~~~~~-~~~~~~~~~~~~~i~l~~~~i~~~ 287 (552)
T PRK09616 212 NSELTRVTEGTRNLFIDVTGTDLEAVLLALNIIATALAERG-G--TIESVKVIYP-DGELTTPDLTPRTREVSVEYINKL 287 (552)
T ss_pred CCCceEEcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHhC-C--EEEEEEEEeC-CCCEeCCCCCceEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999986 2 4554433332 222224545678999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhH
Q 009703 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (528)
Q Consensus 320 LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (528)
||++++.+++.++|++|||.++..+ +. |.|+||+||.||++++||||||||+|||||||+++|... ..++.+
T Consensus 288 lG~~i~~~~i~~iL~~Lgf~~~~~~---~~--~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~~~~~~~~~~~~ 362 (552)
T PRK09616 288 LGIDLSAEEIIELLERMRYDAEIGD---DK--VKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPKVFTIGRLHPIE 362 (552)
T ss_pred hCCCCCHHHHHHHHHHcCCCcEecC---Ce--EEEEeCCCcccccccchHHHHHHHHhCcccCCccCCCCccCCCCChHH
Confidence 9999999999999999999996543 35 999999999999999999999999999999999988632 567788
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
++.+++|+.|+++||+|++||+|+|++++++.++...+ ...| |.||+|+|+++||+||+||||+++++|+|+..++++
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~-~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~l 441 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE-EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKI 441 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC-CCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeE
Confidence 89999999999999999999999999875666654321 1469 999999999999999999999999999966667999
Q ss_pred EEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCeeeeec
Q 009703 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFTCELNN 527 (528)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~~~~~~ 527 (528)
||+|+||.++........+.+++|++++|...+|+++||+++ .+|+++.|++
T Consensus 442 FEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~lgi~~~~~~ 497 (552)
T PRK09616 442 FEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRELGIEYEVEE 497 (552)
T ss_pred EEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 999999987543223456888999999999999999999988 5677666643
No 5
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=2.6e-84 Score=726.87 Aligned_cols=465 Identities=18% Similarity=0.265 Sum_probs=380.3
Q ss_pred EecHHHHHHHhCCC-CCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHHH
Q 009703 5 SVGRDRLFAALGKS-YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQ 83 (528)
Q Consensus 5 ~~~~~~l~~~~g~~-~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiAR 83 (528)
.++..||.+.+-.+ .+.++|.+.|++.|+.++.+.+++ -+..+|+++||++|||||||||++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~D~iiei~iTpNR~D~lS~~GiAR 68 (704)
T CHL00192 2 KISLKWLKELINLENIDLDTLINKLTLAGFEVEDILSVK-------------IGGESDIILDISSTANRSDVLSIQGLSR 68 (704)
T ss_pred cccHHHHHHhcCcccCCHHHHHhhccCCCccccceeeec-------------cCCCCCEEEEEeCCCChHHHHHhHHHHH
Confidence 36788999999988 899999999999999999887641 1236899999999999999999999999
Q ss_pred HHHHHcCCC--CCCcccc-cCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCC-CCcEe
Q 009703 84 ALRVFNKQQ--EIPKYTL-SDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLV 159 (528)
Q Consensus 84 el~~~~~~~--~~p~~~~-~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r-~r~~V 159 (528)
||||++|.. ..| ... ..........+.|+....+.||+|.|++++||++.+ ||.|||+||.++|+| +|++|
T Consensus 69 ElaA~~~~~~~~~p-~~~~~~~~~~~~~~v~i~~~~~~~c~~y~~~~i~~v~v~~----SP~Wl~~rL~~~Gir~iNniV 143 (704)
T CHL00192 69 EISALFNSDPIKLK-YYNPSISWFDKLKNLISNDSSKLNCSMFIAVIIENIEIKD----SPKWLQNRLSSSGFKSLNNLT 143 (704)
T ss_pred HHHHHhCCCcccCC-CcccCccccCCceeEEEecCCccCCCcEEEEEEeCCCCCC----ChHHHHHHHHHcCCcCccHHH
Confidence 999999853 344 111 011001123344442222689999999999999974 899999999999999 59999
Q ss_pred ehhhhhhhccCCC---eEEEecCC----Cce--EEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCC
Q 009703 160 AIGTHDLDTLQGP---FTYEALPP----SHI--NFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNR 230 (528)
Q Consensus 160 dIgn~Dldki~~p---~~y~~~~~----~~i--~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g 230 (528)
|||||.|..+||| |+++++.+ ++| .++.... ++.+.+||++++.|.+ ..+||+|+++
T Consensus 144 DiTNyVmle~GqPlHafD~dki~g~~~~~~i~~~Vr~a~~-----ge~~~~Ld~~e~~L~~---------~~LvI~d~~k 209 (704)
T CHL00192 144 DIQNYIMLETGQPIEIYDLDKIYSKNTTSSLALSSKFALQ-----KSSFIASNSKNIELEN---------NILVVQANNV 209 (704)
T ss_pred HHHHHHHHHhCCCchhhhHHhhcCCCccCcceeEEEEcCC-----CCEEEeeCCCEEEcCC---------CCEEEEeCCc
Confidence 9999999999999 77888876 446 7887764 4567889999999975 4699999985
Q ss_pred CeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHHHHHHHHHHHHHHhcCCc
Q 009703 231 TVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIVLNTMVTIFSEYCKRKY 284 (528)
Q Consensus 231 ~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~al~~~~~~l~~~~~~~~ 284 (528)
|+||||||||++|+|+++||||||||| |+|+..+..|+++++.++.+.|++.
T Consensus 210 -~lalAGVmGg~~S~V~~~T~nIlLEsA~F~p~~Irktsr~l~l~TdaS~RfERgvdp~~~~~al~ra~~Li~e~~gg~- 287 (704)
T CHL00192 210 -IISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLLEAYYRLVSLLRILNPKL- 287 (704)
T ss_pred -eeeecceecCCcceecCCccEEEEEEEEeCHHHHHHHHHHhCCcchHHhhhhcCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 999999999999999999999999999 4566667778888888888887641
Q ss_pred ceecEEEEeeCCceeeecC-CcceeEEeeHHHHHhhcCC-----C---CCHHHHHHHHHhcCCeEEEcCCCCCcceEEEe
Q 009703 285 QVEPVEVVYADGRSYVYPD-LSAYNMEVSLSYINHTIGV-----S---LEAEEVTSLLNRMQLHAERSASGNNQWNINVL 355 (528)
Q Consensus 285 ~i~~v~v~~~~g~~~~~p~-~~~~~i~~~~~~i~~~LG~-----~---l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~ 355 (528)
++.. +... ++. ..++.|.++.++|+++||+ + ++.++|.++|++|||++...+++ +. |.|+
T Consensus 288 ~~~~-------~~~~-~~~~~~~~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~~~-~~--~~V~ 356 (704)
T CHL00192 288 KCKF-------HFIY-KKIKNSSRRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDSLK-LN--WEVL 356 (704)
T ss_pred EEcc-------ceec-CCCCCCCeeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecCCC-ce--EEEE
Confidence 1111 1111 222 3568999999999999998 8 99999999999999999654121 14 9999
Q ss_pred cCCCcc-ccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhcc
Q 009703 356 VPPTRS-DVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR 431 (528)
Q Consensus 356 vP~~R~-DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~ 431 (528)
||+||. ||++++||||||||+|||||||+++|... ..++.+++.+++|+.|+++||+|++||+|+|++. +
T Consensus 357 vP~~R~~DI~~~~DliEEIaRiyGYdnI~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~---~--- 430 (704)
T CHL00192 357 IPSYRKDDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES---F--- 430 (704)
T ss_pred cCCCCchhcCchhHHHHHHHHhcCcccCcccccccccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh---c---
Confidence 999998 99999999999999999999999988632 5677888999999999999999999999999974 1
Q ss_pred CCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCCcccCcccccEEEEEEecC----
Q 009703 432 QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---- 505 (528)
Q Consensus 432 ~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~---- 505 (528)
. ...| |+||+|+|+++||+||+||||+++++|++++. ++++||+|+||.++.+ ...+.+++|++++|.
T Consensus 431 ~---~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~ 504 (704)
T CHL00192 431 S---KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIR 504 (704)
T ss_pred C---CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCc
Confidence 1 2478 99999999999999999999999999999985 5999999999976542 135778999999985
Q ss_pred --------CCCHHHHHHHHH----hcCCeeeee
Q 009703 506 --------NSGFEVIYLTVL----TKNFTCELN 526 (528)
Q Consensus 506 --------~~~f~~i~~~l~----~~~~~~~~~ 526 (528)
..+|+++||+|+ .+|+++.|.
T Consensus 505 ~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~~~~ 537 (704)
T CHL00192 505 SSWSEKAQSLNWFEAKGIIENFFQKLNLPIYWK 537 (704)
T ss_pred cccCCCCCccCHHHHHHHHHHHHHHCCCcEEEE
Confidence 348999999988 467766654
No 6
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=6.7e-79 Score=693.19 Aligned_cols=426 Identities=23% Similarity=0.349 Sum_probs=337.4
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (528)
+|+++||++|||||||||++||||||||++|.. ..|.+....... ...+.|..+..+.||+|.+++++||++..
T Consensus 153 ~D~iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~--~~~~~v~i~~~~~c~~y~~~~i~~v~~~~--- 227 (791)
T PRK00629 153 DDTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPATI--DDKLPVEIEDPDLCPRYAGRVIKGVKNIA--- 227 (791)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCcccccccccc--CCceEEEecCCCCCccEEEEEEECCCCCC---
Confidence 689999999999999999999999999999964 666533221111 11244544445789999999999999432
Q ss_pred CCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceee
Q 009703 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (528)
Q Consensus 139 ~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (528)
+||+|||+||++++.| +|++|||+||.+.++++| |++++..+ .+.++.... ++++..|+++++++.
T Consensus 228 ~sp~wlq~rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~-~i~vr~~~~-----~e~~~~l~~~~~~l~---- 297 (791)
T PRK00629 228 PSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGG-GIVVRRAKE-----GEKLTTLDGKERTLD---- 297 (791)
T ss_pred CCHHHHHHHHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCC-ceEEEECCC-----CCEEEecCCceecCC----
Confidence 5999999999999998 588999999666555555 33333332 244443321 122333344455554
Q ss_pred cccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHHH
Q 009703 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (528)
Q Consensus 215 ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~a 268 (528)
+.++||+|++ +|+|+||||||++|+|+++||+||||+| |+||+.+..|
T Consensus 298 -----~~~lvi~d~~-~~lsl~gi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeRGvdp~~~~~a 371 (791)
T PRK00629 298 -----PEDLVIADDK-KPLALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLA 371 (791)
T ss_pred -----CCcEEEEeCC-CeEEEeeeecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhheccCCCHHHHHHH
Confidence 2469999997 4999999999999999999999999999 5677778899
Q ss_pred HHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCC
Q 009703 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNN 348 (528)
Q Consensus 269 l~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~ 348 (528)
++++++++.+++++ ++.... ...+|...++.|.++.++|+++||++++.++|.++|++|||++...++ +
T Consensus 372 l~~a~~ll~e~~~g--~i~~~~-------~~~~~~~~~~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~~--~ 440 (791)
T PRK00629 372 LERATALILELGGG--EVVEGV-------VDVYPLPKEPTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVDG--D 440 (791)
T ss_pred HHHHHHHHHHHcCC--eEeeee-------EecCCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecCC--C
Confidence 99999999999653 232211 122333336899999999999999999999999999999999975431 2
Q ss_pred cceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCC-C---CCChhHHHHHHHHHHHHHCCCceeecccccChHH
Q 009703 349 QWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-V---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (528)
Q Consensus 349 ~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~-~---~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~ 424 (528)
. |.|+||+||.||.+++||||||||+|||||||+++|.. . ..++.+++.+++|+.|+++||+|++||+|+|+++
T Consensus 441 ~--~~V~vPs~R~DI~~~~DliEEI~RiyGyd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~ 518 (791)
T PRK00629 441 G--LTVTVPSWRFDIEIEEDLVEEVARIYGYDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPED 518 (791)
T ss_pred e--EEEECCCCccccCcccHHHHHHHHHhCcccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHH
Confidence 5 99999999999999999999999999999999998862 2 5667788899999999999999999999999987
Q ss_pred HHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCCcccCcccccEEEEEE
Q 009703 425 ISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (528)
Q Consensus 425 ~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~ 502 (528)
+. .++.. ...+ |+||+|+|+++||+||+||||+++++|++++. ++++||+|+||..+. ...++.++||+++
T Consensus 519 ~~-~~~~~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---~~~~e~~~la~~~ 591 (791)
T PRK00629 519 AK-LFGLN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG---DLPREPEHLAGVL 591 (791)
T ss_pred HH-hcCCC---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC---CCCcchhEEEEEE
Confidence 54 34432 2568 99999999999999999999999999999875 599999999997642 2456888999999
Q ss_pred ecCC----------CCHHHHHHHHH----hcCCe-eeee
Q 009703 503 CGAN----------SGFEVIYLTVL----TKNFT-CELN 526 (528)
Q Consensus 503 ~~~~----------~~f~~i~~~l~----~~~~~-~~~~ 526 (528)
+|.. .+|+++||+++ .+|++ ++|.
T Consensus 592 ~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~~~~~~ 630 (791)
T PRK00629 592 TGNRVEESWGGKRPVDFFDLKGDVEALLEALGLPEVEFV 630 (791)
T ss_pred ECCCccccccccCCCCHHHHHHHHHHHHHHcCCCceeEe
Confidence 9953 68999999988 45664 5554
No 7
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=5.5e-79 Score=695.00 Aligned_cols=426 Identities=23% Similarity=0.343 Sum_probs=332.3
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (528)
+|+++||++|||||||||++||||||||++|.. ..|.+............+.|..+..+.||+|.+++++||++++
T Consensus 155 ~D~i~ei~itpNR~D~lS~~GiARelaa~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~y~~~~i~~v~~~~--- 231 (798)
T TIGR00472 155 DDDIIEVSITPNRGDCLSILGIARELAALFDLPLETPVPFEPETTETIDEGFKIEIEDPEVCPFYLGRVIKGVKVKP--- 231 (798)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccccCCceEEEecCCCCCccEEEEEEeCCCCCC---
Confidence 589999999999999999999999999999963 5554433211100012244544445789999999999999985
Q ss_pred CCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceee
Q 009703 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (528)
Q Consensus 139 ~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (528)
||+|||++|+++++| .|++|||+||.+.+.++| |++++..+..+.++.... ++.+..|+++++.+.
T Consensus 232 -sp~wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~~-----~e~~~~L~~~~~~l~---- 301 (798)
T TIGR00472 232 -SPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAKE-----GESFTTLDGKERELK---- 301 (798)
T ss_pred -ChHHHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcCC-----CCEEEccCCeEEecC----
Confidence 899999999999998 599999999666666655 333333322111122221 122333344444443
Q ss_pred cccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHHH
Q 009703 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (528)
Q Consensus 215 ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~a 268 (528)
+..+||+|++ +++|+||||||++|+|+++|||||||+| |+|++.+..|
T Consensus 302 -----~~~lvi~d~~-~~lsi~gi~~~~~s~i~~~T~~i~le~a~f~~~~ir~t~~~l~l~t~as~RferGvd~~~~~~a 375 (798)
T TIGR00472 302 -----KGDLVIADDK-KPLAIAGVMGGKESGVTDTTTNIFLESAYFNPERIRKTARRLGISTDSSYRFERGVDPELTELA 375 (798)
T ss_pred -----CCcEEEEECC-ceEEEeeeecCccccccCCccEEEEEEEeeCHHHHHHHHHHhCCCchhhhhhhcCCCHHHHHHH
Confidence 2459999999 5999999999999999999999999999 5566666899
Q ss_pred HHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCC
Q 009703 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNN 348 (528)
Q Consensus 269 l~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~ 348 (528)
+++++++|.++|++. +..+.+.. ..|...++.|.++.++|+++||++++.++|.++|++|||.+...+ +
T Consensus 376 l~~~~~ll~e~~~~~--~~~~~~~~------~~~~~~~~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~~---~ 444 (798)
T TIGR00472 376 LDRALNLILEIFGGE--VISVVSDV------YKEKAKEKKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQK---D 444 (798)
T ss_pred HHHHHHHHHHHhCCe--ecceeeec------cCCCCCCeEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEecC---C
Confidence 999999999998753 22222211 134567789999999999999999999999999999999997543 2
Q ss_pred cceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCCh-hHHHHHHHHHHHHHCCCceeecccccChHH
Q 009703 349 QWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLA-LNEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (528)
Q Consensus 349 ~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~-~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~ 424 (528)
. |.|+||+||.||+|++||||||||+|||||||+++|... ...+ .+...+++|+.|+++||+|++||+|+|+++
T Consensus 445 ~--~~V~vP~~R~DI~~~~DliEEI~R~yGydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~ 522 (798)
T TIGR00472 445 G--WEVTVPSYRHDITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGLGLNEVITYSLVSSEK 522 (798)
T ss_pred e--EEEECCCCccccccchhhHhhhhhhhCcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHH
Confidence 5 899999999999999999999999999999999988643 3333 333458999999999999999999999976
Q ss_pred HHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCCcccCcccccEEEEEE
Q 009703 425 ISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (528)
Q Consensus 425 ~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~ 502 (528)
.. .++.... ...+ |+||+|+|+++||+||+||||+++++|++++. ++++||+|+||.++++ . +++.++||+++
T Consensus 523 ~~-~~~~~~~-~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~-~~e~~~La~~~ 597 (798)
T TIGR00472 523 AE-KFNFPKL-ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--G-VKEQLRLAILI 597 (798)
T ss_pred HH-hhcCCCC-CceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--C-cchhhEEEEEE
Confidence 44 3443321 1269 99999999999999999999999999999875 4999999999976532 1 56889999999
Q ss_pred ecCC-----------CCHHHHHHHHH----hcCCe
Q 009703 503 CGAN-----------SGFEVIYLTVL----TKNFT 522 (528)
Q Consensus 503 ~~~~-----------~~f~~i~~~l~----~~~~~ 522 (528)
+|.. .+|+++||+++ .+|+.
T Consensus 598 ~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 598 SGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 9963 58999999988 35554
No 8
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-73 Score=634.03 Aligned_cols=431 Identities=27% Similarity=0.408 Sum_probs=346.7
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccC-CCCCCeEEEEEEEccccCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPET-SSIRPYVVCAVLRDISFDEAS 137 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~-~~~rp~~~~~vi~~v~~~~~~ 137 (528)
+|.++++++||||+||+|+.|+|||+++.++.. ..|...-.....+-..++.+..+. +..||+|.+++++|+++..
T Consensus 12 ~d~i~e~~~tpnr~D~ls~~GiarE~aa~~~~~~~~~~~~d~~~~~~~~~~~~v~ie~~~~~~~~~~~~~i~~v~~~~-- 89 (650)
T COG0072 12 DDLIIEISITPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGRVIKGVKVNA-- 89 (650)
T ss_pred ccceeeccCCCCHHHhhccccceeehhhhcCCcccccccccccccccccceeEeecccccccCCccceEEEECcccCC--
Confidence 456899999999999999999999999998753 444432111101111256666666 5899999999999999653
Q ss_pred CCCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhccccccccee
Q 009703 138 YNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYL 213 (528)
Q Consensus 138 ~~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~ 213 (528)
.||.|+|.+|...+.| .+++||++||.+..+|+| |+++..+. ++.++-...+ +++..|+++++.+..
T Consensus 90 -~sP~~~~~~l~~~gir~in~lVDitnyv~l~~Gqp~h~~d~~~~~~-~i~vr~a~~~-----e~~~~ld~~~~~l~~-- 160 (650)
T COG0072 90 -PSPLWLQARLRGVGIRPINNLVDITNYVHLELGQPRHAFDIGKIDG-KIPVRYAKEG-----ETLVFLDGKERELLT-- 160 (650)
T ss_pred -CCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCcchHhhhhhccC-ceEEEEccCC-----CceEecCCcceeeCC--
Confidence 5899999999999998 599999999888888888 55555554 4555544332 334455555555542
Q ss_pred ecccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHH
Q 009703 214 HIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKI 267 (528)
Q Consensus 214 ~ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~ 267 (528)
...||+|.++ ++|++|||||++|.+++.|+|+++|++ |+|+..+..
T Consensus 161 -------~~~vi~d~~~-~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~ 232 (650)
T COG0072 161 -------GDLVIADHEK-GLALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEK 232 (650)
T ss_pred -------CCEEEEeCCC-ceeeeeeeeccccCCCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHH
Confidence 3478888775 678888888888888888888888887 789999999
Q ss_pred HHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCC
Q 009703 268 VLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGN 347 (528)
Q Consensus 268 al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~ 347 (528)
||++++++|+++|+ +++.++.+.+. ..... .++.+.++.++|+++||++++.++++++|+||||.+...++
T Consensus 233 al~~~~~ll~e~~g--g~v~~~~~~~~--~~~~~---~~~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~-- 303 (650)
T COG0072 233 ALNRATTLLAEICG--GEVSSVVIVGG--DEKLT---PPRKIELRLERINRLLGLELSAEEIEKILKRLGFKVEVKGD-- 303 (650)
T ss_pred HHHHHHHHHHHhcC--CeeeeEEEecC--CcCCC---CCceEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeeEecCC--
Confidence 99999999999997 35777776642 11111 26899999999999999999999999999999999987653
Q ss_pred CcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---C--CChhHHHHHHHHHHHHHCCCceeecccccCh
Q 009703 348 NQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---K--PLALNEFSDLMRLEIAMNGFTEVLTWILCSS 422 (528)
Q Consensus 348 ~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~--~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~ 422 (528)
. |.|++|+||.||+|++||||||||+|||||||+++|... . ..+.+++.+.+|+.|+++||+|++||+|+|+
T Consensus 304 -~--~~V~vPs~R~DI~~e~DliEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 304 -G--LTVTVPSYRVDILIEADLIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred -c--EEEeCCCCcccccchhHHHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 4 899999999999999999999999999999999999865 3 6788889999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC-ccEEEeeeeeecCCCcccCcccccEEEE
Q 009703 423 KEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAA 500 (528)
Q Consensus 423 ~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~-~~lFEiG~V~~~~~~~~~~~~~~~~l~~ 500 (528)
+.+..++... .+++ |+||+|+|+++||+|||||||+++++|+||++| +++||+|+||..+++.. ++..++++
T Consensus 381 e~~~~~~~~~---~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~---~~~~~~~~ 454 (650)
T COG0072 381 EEAKLFGLEN---DEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAE---RETRHLAG 454 (650)
T ss_pred HHHHHhccCC---CcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCccc---chhHHHHH
Confidence 9987776533 2278 999999999999999999999999999999999 99999999999886533 33344444
Q ss_pred EEec----------CCCCHHHHHHHHH----hcCCeeeeec
Q 009703 501 LYCG----------ANSGFEVIYLTVL----TKNFTCELNN 527 (528)
Q Consensus 501 ~~~~----------~~~~f~~i~~~l~----~~~~~~~~~~ 527 (528)
+.+| ..++|+++||+|+ .+|++++|++
T Consensus 455 l~~g~~~~~~w~~~~~v~f~d~Kg~ve~ll~~lg~~~~~~~ 495 (650)
T COG0072 455 LAAGLAGEESWQGKRPVDFYDAKGDLEALLEALGVEYEFEP 495 (650)
T ss_pred HhhccccccccccCCCcCHHHHHHHHHHHHHHhCCceEEEE
Confidence 4444 1578999998877 7888888765
No 9
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=99.90 E-value=1.8e-23 Score=201.64 Aligned_cols=117 Identities=32% Similarity=0.531 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCC-CCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-KPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~-~~~ 473 (528)
+.+.+++|+.|+++||+|++||+|++++++.. +... ....| |.||+|+|+++||+||+||||+++++|++++ .++
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~ 79 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPL 79 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 46889999999999999999999999976543 3222 13579 9999999999999999999999999999988 579
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCC-----------CCHHHHHHHHHh
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN-----------SGFEVIYLTVLT 518 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~f~~i~~~l~~ 518 (528)
++||+|+||.++.. .+++.+++|++++|.. .+|+++||+++.
T Consensus 80 ~lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ 132 (198)
T cd00769 80 RLFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEA 132 (198)
T ss_pred eEEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHH
Confidence 99999999976531 4568889999999964 599999999883
No 10
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=99.86 E-value=7.2e-22 Score=186.65 Aligned_cols=135 Identities=27% Similarity=0.344 Sum_probs=102.4
Q ss_pred CCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCC-CcEeehhh------------hhhhccCCCeEEEecCCCceEE
Q 009703 119 IRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRR-RTLVAIGT------------HDLDTLQGPFTYEALPPSHINF 185 (528)
Q Consensus 119 ~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~-r~~VdIgn------------~Dldki~~p~~y~~~~~~~i~f 185 (528)
.||+|.+++++|++... +||.|||+||.+.+.+. |++|||.| ||+|++.+|+.++...++ .+|
T Consensus 1 ~c~~~~~~~~~~i~~~~---~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~pi~~~D~dki~~~i~~~~~~~~-e~~ 76 (174)
T PF03483_consen 1 ACRRYFSRVIKNINKNR---PSPEWLKRRLKKSGILPINNLVDIQNYISLETGQPIGAYDLDKIKGPITLRLAKGG-EKF 76 (174)
T ss_dssp CSSEEEEEEEESB-TTH---HH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTTEEEEEEGGGTBSEEEEEEESTT-EEE
T ss_pred CcchhhEEEEECCCCCc---CCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCCCCchhhHhHCCCCEEEEEecCC-ceE
Confidence 49999999999999664 58999999999998885 99999998 788888888888877764 488
Q ss_pred EeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEecccCh---
Q 009703 186 VPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDL--- 262 (528)
Q Consensus 186 ~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~ag~D~--- 262 (528)
.|+++. +.++. +.+|||+|++| ++|+||||||++|+|+++||+||||++++|+
T Consensus 77 ~~l~~~--------------~~~l~---------~~~~vi~D~~~-~i~~~gi~~~~~t~i~~~T~~ilie~~~~~~~~i 132 (174)
T PF03483_consen 77 TPLGGK--------------EVELD---------EGDLVICDDNG-IISIAGIIGSERTKITENTKNILIEVAGFDPKSI 132 (174)
T ss_dssp EBTTSE--------------EEEEC---------TTCEEEECTTC-EEEETTTEEBSTTC--TT--EEEEEEEES-HHHH
T ss_pred EECCCc--------------eeecc---------ceEEEEEECCC-CEeeccccCCccceeEcCCCeEEEEEeecCHHHH
Confidence 888742 23342 25699999997 7899999999999999999999999998665
Q ss_pred -----------------------HhHHHHHHHHHHHHHHHhc
Q 009703 263 -----------------------TKAKIVLNTMVTIFSEYCK 281 (528)
Q Consensus 263 -----------------------~~~~~al~~~~~~l~~~~~ 281 (528)
..+..|+++++.+|.++||
T Consensus 133 ~~~~~~~~l~t~~~~r~~k~~~~~~~~~a~~~~~~ll~~~~g 174 (174)
T PF03483_consen 133 RKSSKKLKLRTDASYRYEKGIDPNLLLNALNRATSLLLEICG 174 (174)
T ss_dssp HHHHHHTT---HHHHHHHH-S-TTCHHHHHHHHHHHHHHHST
T ss_pred HHHHHhcCcccHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4456677777777777764
No 11
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.82 E-value=1.1e-20 Score=151.85 Aligned_cols=70 Identities=31% Similarity=0.615 Sum_probs=59.5
Q ss_pred ceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCC
Q 009703 306 AYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (528)
Q Consensus 306 ~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (528)
++++.++.++++++||++++.+++.++|++|||++...++ +. |.|+||+||.||+|++||||||||+|||
T Consensus 1 p~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~--~~--~~v~vP~~R~Di~~~~DliEEiaR~yGY 70 (70)
T PF03484_consen 1 PKKITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDG--DT--LEVTVPSYRFDIEHEEDLIEEIARIYGY 70 (70)
T ss_dssp -EEEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CT--TE--EEEEEETTSTT-SSHHHHHHHHHHHHTG
T ss_pred CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCC--CE--EEEEcCCCcCCcCcccHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999987433 36 9999999999999999999999999998
No 12
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.82 E-value=7e-20 Score=191.47 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=129.0
Q ss_pred hhhhhhCCCCCCCCCC--------CCC---CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-
Q 009703 372 DVAIAYGYNNIPKRKP--------ASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV- 439 (528)
Q Consensus 372 EIar~yGydni~~~~p--------~~~---~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v- 439 (528)
+|+|+||||+|++++| ... +.++.+++.+.+|+.|.++||+|++|++|++.+ .++.|+... ..
T Consensus 208 ~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE-~~E~m~~~~----g~e 282 (453)
T TIGR02367 208 SLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE-YIERMGIDN----DTE 282 (453)
T ss_pred hhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchH-HHHhhcCcc----CCc
Confidence 3599999999999999 433 889999999999999999999999999999665 467776532 25
Q ss_pred eeCCc--ccchhHHHhhhHHHHHHHHHHccC-CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHH
Q 009703 440 VGNPR--TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTV 516 (528)
Q Consensus 440 l~NP~--s~e~~~lR~SLlpgLL~~~~~N~~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l 516 (528)
+.||+ +.++.+||++|+|+|++.++.|.+ ..+|+|+||+|+||..+.....+.+|.++++++++|..++|+++++++
T Consensus 283 I~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL 362 (453)
T TIGR02367 283 LSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAII 362 (453)
T ss_pred ccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHH
Confidence 88888 888999999999999999998765 568999999999998776555667899999999999999999988775
Q ss_pred H----hcCCeeeee
Q 009703 517 L----TKNFTCELN 526 (528)
Q Consensus 517 ~----~~~~~~~~~ 526 (528)
. .+|+++++.
T Consensus 363 ~e~Lr~LGIdfeit 376 (453)
T TIGR02367 363 KDFLDHLEIDFEIV 376 (453)
T ss_pred HHHHHHCCCceEEe
Confidence 5 789988775
No 13
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=99.81 E-value=8.2e-20 Score=178.82 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCC------cce-eeCCcccchhHHHhhhHHHHHHHHHH
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES------TAV-VGNPRTSDFEVVRTTLMPGILKTIGH 465 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~------~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~ 465 (528)
++.+++.+++|+.|+++||+|++||+|++.+..++.++...+ . ..+ |.||+ +++||+||+||||+++++
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~-~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~ 76 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQD-HPARDMQDTFYINDPA---RLLLRTHTSAVQARALAK 76 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCC-CcccccCceEEECCCc---eEEEeccCcHHHHHHHHh
Confidence 467789999999999999999999999999644555543321 1 468 99999 999999999999999999
Q ss_pred ccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHHh
Q 009703 466 NKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVLT 518 (528)
Q Consensus 466 N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~~ 518 (528)
| ..++++||+|+||.++........+.++++++++|...+|+++||+++.
T Consensus 77 N---~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ 126 (218)
T cd00496 77 L---KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEE 126 (218)
T ss_pred c---CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHH
Confidence 9 4579999999999876421122238889999999998899999999883
No 14
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.80 E-value=1.4e-19 Score=145.80 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=64.1
Q ss_pred eeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCC
Q 009703 307 YNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (528)
Q Consensus 307 ~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (528)
+++.++.++++++||++++.+++.++|++|||.++..+++ +. |.|.+|+||.||+|++||||||||+|||
T Consensus 2 ~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~-~~--~~v~~P~~R~Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 2 RTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGDD-DT--LEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred cEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCC-Ce--EEEECCCCccccCcccHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999764322 35 9999999999999999999999999998
No 15
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.68 E-value=2e-16 Score=161.47 Aligned_cols=128 Identities=19% Similarity=0.086 Sum_probs=102.2
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce--eeCC-cccchhHHHhhhHHHHHHHHHHcc
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNP-RTSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v--l~NP-~s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
..++.+++.+++|+.|+++||+|++||+|+++..+++.++.+. +++. +.++ ...|+++|||||+||||+++++|+
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~--~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~ 147 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQ--DHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENE 147 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCC--CCcchhhccceeecCCcceecccHHHHHHHHHhcC
Confidence 6788999999999999999999999999999966777776542 1222 2232 223899999999999999999998
Q ss_pred CCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCe
Q 009703 468 DHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFT 522 (528)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~ 522 (528)
+ .|+|+||+|+||..+....+...+.+++++++.+...+|+++||+++ .+|++
T Consensus 148 ~--~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 148 K--PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred C--CCceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 8 67999999999987642112233788999999998889999999988 45663
No 16
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.63 E-value=8.8e-16 Score=152.60 Aligned_cols=135 Identities=28% Similarity=0.329 Sum_probs=116.3
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-----CCcce-eeCCcc--cchhHHHhhhHHHHHHH
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-----ESTAV-VGNPRT--SDFEVVRTTLMPGILKT 462 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-----~~~~v-l~NP~s--~e~~~lR~SLlpgLL~~ 462 (528)
+.+|.+++.+++|++|+++||+|+.++.+.+...+|+.|+.+.+ ..+.+ |+||.+ +++.+|||++.|+++++
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHH
Confidence 88999999999999999999999999999999999999987642 12457 999999 99999999999999999
Q ss_pred HHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hc-CCe--eeeec
Q 009703 463 IGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TK-NFT--CELNN 527 (528)
Q Consensus 463 ~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~-~~~--~~~~~ 527 (528)
+ |.+++.|+|+||+|+||.+|....+...+.+.+.++++++..+|.++|++|+ .+ |.+ +.|++
T Consensus 95 l--~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~~~~r~~p 164 (247)
T PF01409_consen 95 L--NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGIDVKVRFRP 164 (247)
T ss_dssp H--TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred H--HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcccceEeec
Confidence 9 7777789999999999998875556667888999999999999999999987 45 765 55544
No 17
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=99.63 E-value=1.1e-15 Score=143.78 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=104.4
Q ss_pred CCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCCeE-EEe--cCCCceEEEeCCCcccCC
Q 009703 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGPFT-YEA--LPPSHINFVPLKQTRDFT 195 (528)
Q Consensus 120 rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p~~-y~~--~~~~~i~f~~L~~~~~~~ 195 (528)
||++.++++++++.. .+||+|||+|||+++++ .|.+||+.||++.+.+.|+. |++ ..++ +.+|+..+ .
T Consensus 1 ~~~~~~~~~~~~~~~---~~s~~~l~~rL~~~~~~~~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~---~l~l~~~~--~ 72 (174)
T smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGK---DIPLRRAK--E 72 (174)
T ss_pred CCcEEEEEEECCCCC---CCCHHHHHHHHHHcCCCCcchhhhHHHHHHHHhCCCCeeEcHHHcCCC---eEEEEECC--C
Confidence 788999999998865 25899999999999887 48899999999998888833 443 2222 23333221 1
Q ss_pred hHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec-----------------
Q 009703 196 ADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT----------------- 258 (528)
Q Consensus 196 ~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a----------------- 258 (528)
++++..+.+++..+.+ ..+|++|+++ +++++|+||++.++|+++|+++++|++
T Consensus 73 ~e~~~~l~~~~~~~~~---------~~~vi~d~~~-~~~i~g~~g~~~~~~~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 73 GETFETLDGKEYELDE---------GDLVIADDEG-PLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred CCEEEecCCcEEecCC---------CCEEEEeCCc-CEEEEEEecCCcceecCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 2233334444444432 3589999886 899999999999999999999999998
Q ss_pred ---------ccChHhHHHHHHHHHHHHHHHh
Q 009703 259 ---------ATDLTKAKIVLNTMVTIFSEYC 280 (528)
Q Consensus 259 ---------g~D~~~~~~al~~~~~~l~~~~ 280 (528)
|+|++.+..|++.++.+|.++|
T Consensus 143 ~~~~~~~~~g~~~~~~~~al~~l~~ll~~~~ 173 (174)
T smart00873 143 TDASGRFERGVDPELVELALDRAAALLLEIC 173 (174)
T ss_pred ceeeecccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3566666677777777777654
No 18
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=3.5e-13 Score=141.79 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCc--ccchhHHHhhhHHHHHHHHHHcc
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR--TSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~--s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
+.++...+.+.+|+.|.++||+|++|++|++.+. ++.++... .. +.+|+ ++++.+||++|+|+|++.++.|.
T Consensus 202 ~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~-~e~~g~~~----g~~i~~~my~ideel~LRpsLtPsLlr~la~n~ 276 (417)
T PRK09537 202 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDN----DTELSKQIFRVDKNFCLRPMLAPGLYNYLRKLD 276 (417)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HHHhCCCC----cccchhhheeeCCceEehhhhHHHHHHHHHhhh
Confidence 6788999999999999999999999999997764 66665432 13 55555 66789999999999999999886
Q ss_pred C-CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCeeeee
Q 009703 468 D-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFTCELN 526 (528)
Q Consensus 468 ~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~~~~~ 526 (528)
+ ...|+|+||+|+||..+.......++.+.+++.+.|...+|++++++++ .||++|.+.
T Consensus 277 k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 277 RILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGIDYEII 340 (417)
T ss_pred hcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCCCcEEe
Confidence 5 4678999999999988765445667888999999999999999888766 788877654
No 19
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.45 E-value=1.4e-13 Score=132.38 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
+.+.+.+|+.|+++||+|++||+|++.+... .++.. ...+ +.||++.+..+||+|++|+|++.+++|+ +..|++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~~~~~~ 77 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLE-KAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHH-HcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-ccCCEE
Confidence 4688999999999999999999999987643 32221 2357 9999999999999999999999999999 667899
Q ss_pred EEEeeeeeecCCCcc--cCcccccEEEEEEecCCC----CHHHHHHHHH----hcCC
Q 009703 475 IYEVGDVVLLDEKKD--VGASCRRRLAALYCGANS----GFEVIYLTVL----TKNF 521 (528)
Q Consensus 475 lFEiG~V~~~~~~~~--~~~~~~~~l~~~~~~~~~----~f~~i~~~l~----~~~~ 521 (528)
+||+|+||..+.... ...++..++++.++|... .|++++++++ .+|+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC
Confidence 999999997654311 123677899999998754 6888877766 6675
No 20
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.6e-14 Score=161.81 Aligned_cols=217 Identities=23% Similarity=0.233 Sum_probs=173.6
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||++...+..|.+.+-.--......+.|.++|++.|..... -.+++.++.| |++|..|
T Consensus 1 ~g~~~~~~~~L~d~i~e~~~tpnr~D~ls~~GiarE~aa~~---------------------~~~~~~~~~~-d~~~~~~ 58 (650)
T COG0072 1 MPTIVREYLDLDDLIIEISITPNRADCLSMLGIARELAAEY---------------------DLKLEFPKIR-DLESAEG 58 (650)
T ss_pred CCchhhhhhhhccceeeccCCCCHHHhhccccceeehhhhc---------------------CCcccccccc-ccccccc
Confidence 89999999999999732222357889999999999854321 3788888888 9999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCcEee
Q 009703 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (528)
Q Consensus 81 iARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~~Vd 160 (528)
+++ ..+++...- .+... ....++.+.......+|+..+++++|+.+. ++.+++++|+++|+..||++..+|
T Consensus 59 ~~~--~~~v~ie~~-~~~~~----~~~~~~i~~v~~~~~sP~~~~~~l~~~gir--~in~lVDitnyv~l~~Gqp~h~~d 129 (650)
T COG0072 59 LAR--KIFLEIEAG-KYACP----RYAGRVIKGVKVNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFD 129 (650)
T ss_pred ccc--eeEeecccc-cccCC----ccceEEEECcccCCCCCHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhCCcchHhh
Confidence 999 444444211 12211 112345555444578999999999999998 678999999999999999999999
Q ss_pred hhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhccccccc--ceeecccCCCcceEEEeCCCCeeecCCc
Q 009703 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLK--KYLHIIENSPLYPVLYDQNRTVLSLPPI 238 (528)
Q Consensus 161 Ign~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~--~y~~ii~~~~~~pVI~D~~g~vlslagI 238 (528)
++.||. +.|+.|.+..+ ++.|.++++.+.+++..+.+ .|.++. .|.+.+.+++.+|.+.|..+.+.++||+
T Consensus 130 ~~~~~~---~i~vr~a~~~e-~~~~ld~~~~~l~~~~~vi~---d~~~~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi 202 (650)
T COG0072 130 IGKIDG---KIPVRYAKEGE-TLVFLDGKERELLTGDLVIA---DHEKGLALAGVMGGADSEVDPNTTDVLLEVASFPPI 202 (650)
T ss_pred hhhccC---ceEEEEccCCC-ceEecCCcceeeCCCCEEEE---eCCCceeeeeeeeccccCCCccceeeeeeeEecChH
Confidence 999999 55677766554 46777777777788888776 777777 9999999999999999999999999999
Q ss_pred ccCCce-eeecCCceEEE
Q 009703 239 INGAHS-AITLKTKNVFI 255 (528)
Q Consensus 239 igg~~s-~It~~T~nI~i 255 (528)
+++..| +++.+|++.++
T Consensus 203 ~i~~~~r~l~~~T~~~~r 220 (650)
T COG0072 203 IISKTSRRLGLDTEASFR 220 (650)
T ss_pred HHHhhcccccCCcceeEE
Confidence 999999 99999999885
No 21
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.40 E-value=1.9e-12 Score=132.95 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=102.1
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-----CCcce-eeCCcccchhHHHhhhHHHHHHHHH
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-----ESTAV-VGNPRTSDFEVVRTTLMPGILKTIG 464 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-----~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~ 464 (528)
+.+|.+.+.+.+|++|+++||+|+.++.+++...+|+.|+.+.+ -.+.+ | +++.+|||++.|+++++++
T Consensus 106 ~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~lLRThTSp~qir~L~ 180 (339)
T PRK00488 106 SLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGLLLRTHTSPVQIRTME 180 (339)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCceeeccCcHHHHHHHH
Confidence 78999999999999999999999999999999999999987642 01346 7 5789999999999999998
Q ss_pred HccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 465 HNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 465 ~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
. +..|+|+||+|+||..|....+.......+.+++.++..+|+++|++|+
T Consensus 181 ~---~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~ 230 (339)
T PRK00488 181 K---QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLE 230 (339)
T ss_pred h---cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHH
Confidence 6 4578999999999988753334445566799999999999999999988
No 22
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.04 E-value=1.2e-09 Score=116.96 Aligned_cols=130 Identities=15% Similarity=0.249 Sum_probs=96.2
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC---------------CC---------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ---------------TD--------------------- 434 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~---------------~~--------------------- 434 (528)
+++|.....++||+.-..+||.|++|-..+.+.+.+..++.. .+
T Consensus 45 ~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~ 124 (529)
T PRK06253 45 KPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLS 124 (529)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCC
Confidence 789999999999999999999999999999888755432210 00
Q ss_pred --------------------CCcce--eeC------------------------CcccchhHHHhhhHHHHHHHHHHccC
Q 009703 435 --------------------ESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 435 --------------------~~~~v--l~N------------------------P~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
+++.+ |++ |.+ .+++||+||+||||+++++|++
T Consensus 125 ~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~-~~svLRtSLlPGLL~tLs~Nl~ 203 (529)
T PRK06253 125 EEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPES-SRLTLRSHMTSGWFITLSSLLE 203 (529)
T ss_pred hhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCcc-ccCccccchHHHHHHHHHHHHh
Confidence 00111 222 332 4688999999999999999997
Q ss_pred CC-CCccEEEeeeeeecCCCcccCcccccEEEEEEecC------CCCHHHHHHHHH----hcCCe-eeee
Q 009703 469 HP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA------NSGFEVIYLTVL----TKNFT-CELN 526 (528)
Q Consensus 469 ~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~------~~~f~~i~~~l~----~~~~~-~~~~ 526 (528)
++ .|+++||+|+||.++.. .+..+++++.+|. ..+|+++||+++ .+|++ +.|.
T Consensus 204 Rg~~piRLFEIGRVFr~d~~-----eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~LGI~~i~f~ 268 (529)
T PRK06253 204 KRPLPIKLFSIDRCFRREQR-----EDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQFGFTKFKFR 268 (529)
T ss_pred CCCCCEEEEEEeeEEecCCc-----cchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence 76 46999999999976532 1556888877773 458999999877 56775 4543
No 23
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.85 E-value=2e-08 Score=105.96 Aligned_cols=136 Identities=14% Similarity=0.225 Sum_probs=106.2
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC---------------C---------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT---------------D--------------------- 434 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~---------------~--------------------- 434 (528)
+++|.....++||+.-..+||.|++|-..+.+.+.+..++... +
T Consensus 45 k~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~ 124 (533)
T TIGR00470 45 KPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDD 124 (533)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCCh
Confidence 7899999999999999999999999999998887554432110 0
Q ss_pred -------------------CCcce--eeC------------------------CcccchhHHHhhhHHHHHHHHHH-ccC
Q 009703 435 -------------------ESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGH-NKD 468 (528)
Q Consensus 435 -------------------~~~~v--l~N------------------------P~s~e~~~lR~SLlpgLL~~~~~-N~~ 468 (528)
+++.+ |+| |.|. ..+|||++.|+++.+++. |.+
T Consensus 125 ~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~-~~lLRTHTTpgqirtL~~L~~~ 203 (533)
T TIGR00470 125 EKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPEST-TLTLRSHMTSGWFITLSSIIDK 203 (533)
T ss_pred hHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhh-CcccccCChhHHHHHHHHHhhc
Confidence 01111 222 2222 247899999999999997 777
Q ss_pred CCCCccEEEeeeeeecCCCcc-cCcccccEEEEEEecCCCCHHHHHHHHH----hcCCe-eeeec
Q 009703 469 HPKPIKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFEVIYLTVL----TKNFT-CELNN 527 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~-~~~~~ 527 (528)
+..|+|+|++|+||..+...+ ++..+.+.+.+++++...+|.+++++++ .+|+. +.|++
T Consensus 204 ~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~LG~~~vRFRP 268 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQFGFTKFRFRP 268 (533)
T ss_pred CCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHhCCceEEecc
Confidence 788999999999999986434 7788999999999999999999999877 56766 66664
No 24
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.79 E-value=4.1e-08 Score=107.34 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC--C---Ccce-eeCCccc------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--E---STAV-VGNPRTS------------------ 446 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~--~---~~~v-l~NP~s~------------------ 446 (528)
..++..++.+.+|+.+..+||+|+-+-.+-+.-.+|+.+..+.+ . .+.. +.+|-..
T Consensus 231 ~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~ 310 (489)
T PRK04172 231 KKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGG 310 (489)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccC
Confidence 67889999999999999999999987777766556665554221 1 1344 6665421
Q ss_pred ----------------chhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHH
Q 009703 447 ----------------DFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE 510 (528)
Q Consensus 447 ----------------e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~ 510 (528)
..-+||+++.|++++.++.+ +..|+|+||+|+||..+.......++...++++++|...+|+
T Consensus 311 ~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~--~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~ 388 (489)
T PRK04172 311 DTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR--PEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFR 388 (489)
T ss_pred CCCCccccCCcchhhhhccccccCChHHHHHHHHhc--CCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHH
Confidence 12489999999999999984 346799999999997654222234688899999999999999
Q ss_pred HHHHHHH----hcCC-eeeeec
Q 009703 511 VIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 511 ~i~~~l~----~~~~-~~~~~~ 527 (528)
+++++++ .+|+ ++.|++
T Consensus 389 elkg~l~~ll~~lGi~~~~~~~ 410 (489)
T PRK04172 389 DLLGILKEFYKRLGFEEVKFRP 410 (489)
T ss_pred HHHHHHHHHHHHhCCceEEEcC
Confidence 9999877 5788 366653
No 25
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=90.90 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=98.3
Q ss_pred CHHHHHHHHHhc--CCCCCcEeehhh------------hhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcc
Q 009703 140 SFIDLQDKLHQN--ICRRRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKS 205 (528)
Q Consensus 140 s~~~lQekL~~~--~~r~r~~VdIgn------------~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~ 205 (528)
|-..|..|.++. +.++|++||++| ||.+++.+|+..+...+. ..|.+|+...++
T Consensus 83 S~EALlrRv~kg~~lp~InpvVD~yNa~Sl~y~vPig~~D~d~~~g~lrL~~a~gg-E~f~~lg~~~~~----------- 150 (229)
T COG3382 83 SAEALLRRVLKGNSLPRINPVVDIYNAASLKYAVPIGGYDADKIVGDLRLTLADGG-ETFDTLGAKNEP----------- 150 (229)
T ss_pred cHHHHHHHHHcCCCccccchhhhhhhHHHHhhcCCcccccHHHhCCCceEEeccCC-ceeecccCCCCC-----------
Confidence 667888998874 567899999998 899999999888887764 489999732221
Q ss_pred cccccceeecccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEecccC---hHhHHHHHHHHHHHHHHHhcC
Q 009703 206 DLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATD---LTKAKIVLNTMVTIFSEYCKR 282 (528)
Q Consensus 206 ~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~ag~D---~~~~~~al~~~~~~l~~~~~~ 282 (528)
.+ ++.+|.+|++|.++..=|.-.|..|.||++|+|+|+=..+.+ .+.+..|++.++.+|.+++++
T Consensus 151 --~~----------~geiv~~Dd~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp~~~~~~l~~a~~~l~~~l~~~~gG 218 (229)
T COG3382 151 --PL----------EGEIVLVDDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPGVEVEDLVEALDSLADLLEKLLGG 218 (229)
T ss_pred --CC----------CCcEEEEcCCCCeeeecccccceeeehhhccceEEEEEecCCCccHHHHHHHHHHHHHHHHHhcCC
Confidence 11 235899999998888999999999999999999999999754 566788999999999998765
No 26
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=98.46 E-value=5.6e-07 Score=72.24 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=62.0
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
+|+|+++.+++.+++|.+++.+++.++|.++|++++... ++..+++.+|++|+|+++..=
T Consensus 1 ~~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~--------------------~~~~~~v~~P~~R~Di~~~~D 60 (71)
T smart00874 1 PRTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSG--------------------DDDTLEVTVPSYRFDILIEAD 60 (71)
T ss_pred CcEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecC--------------------CCCeEEEECCCCccccCcccH
Confidence 689999999999999999999999999999999996421 112589999999999999999
Q ss_pred HHHHHHHHcC
Q 009703 81 IAQALRVFNK 90 (528)
Q Consensus 81 iARel~~~~~ 90 (528)
++-|++-++|
T Consensus 61 liEei~r~~G 70 (71)
T smart00874 61 LIEEVARIYG 70 (71)
T ss_pred HHHHHHHHhC
Confidence 9999988776
No 27
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.13 E-value=2.8e-05 Score=84.18 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecc-cccChHHHHHHhccCCC-----CCcce-eeCCcccc----------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTW-ILCSSKEISTMLNRQTD-----ESTAV-VGNPRTSD---------------- 447 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~-sL~s~~~~~~~~~~~~~-----~~~~v-l~NP~s~e---------------- 447 (528)
..+|..++.+.+|+++.++||+|+-+- ...+.-.+|+.++.+.+ ..+.. |.+|...+
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~H 306 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVH 306 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHh
Confidence 789999999999999999999999765 45566668888776532 12456 88875442
Q ss_pred --------------------hhHHHhhhHHHHHHHHHHccCC-----C-CCccEEEeeeeeecCCCcccCcccccEEEEE
Q 009703 448 --------------------FEVVRTTLMPGILKTIGHNKDH-----P-KPIKIYEVGDVVLLDEKKDVGASCRRRLAAL 501 (528)
Q Consensus 448 --------------------~~~lR~SLlpgLL~~~~~N~~~-----~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~ 501 (528)
..+|||...+...+.++.+.+. . .|+|+|-+|+||..+.-.-+...+...+-++
T Consensus 307 e~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~ 386 (494)
T PTZ00326 307 EVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGF 386 (494)
T ss_pred ccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEE
Confidence 5799999999999999987532 2 3799999999998876433455778889999
Q ss_pred EecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 502 YCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 502 ~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
+.+...++.++++++. .+|+ +..|+|
T Consensus 387 vi~~~~s~~~L~~~l~~f~~~lG~~~~RfrP 417 (494)
T PTZ00326 387 VIDRNLTLGDLIGTIREFFRRIGITKLRFKP 417 (494)
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCceEEec
Confidence 9999999999998766 5566 344553
No 28
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=4.1e-05 Score=78.90 Aligned_cols=142 Identities=19% Similarity=0.147 Sum_probs=108.5
Q ss_pred hhhhhhCCCCCCCCCCCCC----CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC--C---Ccce-ee
Q 009703 372 DVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--E---STAV-VG 441 (528)
Q Consensus 372 EIar~yGydni~~~~p~~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~--~---~~~v-l~ 441 (528)
+..+-.=+..+..++|... +.+|...+.+.+++++.++||+|+-..-.-+.-.+|+.++.+.+ . .+.. +.
T Consensus 86 ~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~ 165 (335)
T COG0016 86 GLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLK 165 (335)
T ss_pred HHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEc
Confidence 3334444555555666532 78999999999999999999999998877777778888877642 1 1234 55
Q ss_pred CCcccchhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 442 NPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 442 NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+ +.+..+|||.--|-=.+.+..|... |+|+|-+|+||..|...-+..-+...+=+++.++..+|.+++|+|+
T Consensus 166 ~--~~~~~lLRTHTs~vq~R~l~~~~~~--P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~ 237 (335)
T COG0016 166 D--DREKLLLRTHTSPVQARTLAENAKI--PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLE 237 (335)
T ss_pred C--CCCceeecccCcHhhHHHHHhCCCC--CceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHH
Confidence 5 3336799999999989988886543 8999999999998754334445667788899999999999999998
No 29
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.00 E-value=8e-05 Score=80.35 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeec-ccccChHHHHHHhccCCC-----CCcce-eeCCccc-----------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLT-WILCSSKEISTMLNRQTD-----ESTAV-VGNPRTS----------------- 446 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t-~sL~s~~~~~~~~~~~~~-----~~~~v-l~NP~s~----------------- 446 (528)
..+|..++.+.+|+++.++||+|+-+ --..+.-.||+.++.+.+ ..+.. |.+|...
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 78999999999999999999999953 344555567787776532 12456 8877543
Q ss_pred -----------------chhHHHhhhHHHHHHHHHHccCCC-CCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCC
Q 009703 447 -----------------DFEVVRTTLMPGILKTIGHNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG 508 (528)
Q Consensus 447 -----------------e~~~lR~SLlpgLL~~~~~N~~~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~ 508 (528)
...+|||.--+.-.+.++.+.+.+ .|+++|-+|+||..+.-.-+...+...+=+++.+...+
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t 378 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLT 378 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCC
Confidence 357999999999999998765443 46999999999987753223445667788889999999
Q ss_pred HHHHHHHHH
Q 009703 509 FEVIYLTVL 517 (528)
Q Consensus 509 f~~i~~~l~ 517 (528)
|.++++++.
T Consensus 379 ~~~L~g~l~ 387 (492)
T PLN02853 379 LGDLIGVLE 387 (492)
T ss_pred HHHHHHHHH
Confidence 999999988
No 30
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=97.83 E-value=6.7e-05 Score=60.19 Aligned_cols=67 Identities=16% Similarity=0.362 Sum_probs=55.8
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.++.+.+.+++|.+++.+++.++|..+|+.++...++ .+.+.+|+.|+|+..-.=|+
T Consensus 3 ~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~---------------------~~~v~vP~~R~Di~~~~Dli 61 (70)
T PF03484_consen 3 KITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDGD---------------------TLEVTVPSYRFDIEHEEDLI 61 (70)
T ss_dssp EEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTT---------------------EEEEEEETTSTT-SSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCC---------------------EEEEEcCCCcCCcCcccHHH
Confidence 689999999999999999999999999999999864332 79999999999999999999
Q ss_pred HHHHHHcC
Q 009703 83 QALRVFNK 90 (528)
Q Consensus 83 Rel~~~~~ 90 (528)
-|++-++|
T Consensus 62 EEiaR~yG 69 (70)
T PF03484_consen 62 EEIARIYG 69 (70)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998876
No 31
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=96.83 E-value=0.0024 Score=60.10 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHH-HCCCceeecccccChHHHHHHhccC-CCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC---
Q 009703 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH--- 469 (528)
Q Consensus 396 ~~~~~~lR~~l~-~~Gf~Ev~t~sL~s~~~~~~~~~~~-~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~--- 469 (528)
+.+.+.+++.+. ..||+|+.+-.|.+.+.... .+.. .-.+..+ +.+.-.+++ +||++.-|++....+.....
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~-~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEY-CLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEE-EE-SSSHHHHHHHHHHHEEBHGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccE-Eeccccccceeeeecceeeeccc
Confidence 568889999999 99999999999999886433 2221 1113456 777665444 99999999999999887664
Q ss_pred CCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC----C----CHHHHHHHHHhcCC-eeeee
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN----S----GFEVIYLTVLTKNF-TCELN 526 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~----~----~f~~i~~~l~~~~~-~~~~~ 526 (528)
.+|+++|++|.+|........| .++....-+.+.+.. . -...++.+++.||+ .+.+.
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~ 149 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIV 149 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEE
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 4799999999998765322222 355555555444443 2 23346677789999 77665
No 32
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=96.77 E-value=0.005 Score=66.03 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC--CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~--~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (528)
...+.+.+.+|+.+...||+|+.|-.|...+......+... ..++.+ +.++ +.+.-+||+-+.|++.+.++.|.+
T Consensus 19 ~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~- 96 (412)
T PRK00037 19 AKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL- 96 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC-
Confidence 44556889999999999999999999877653211111110 013456 7776 566779999999999999998755
Q ss_pred CCCccEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHH---HHHHHHHhcCCe
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFE---VIYLTVLTKNFT 522 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~---~i~~~l~~~~~~ 522 (528)
.|+|+|++|+||..+.......++...+++-+.|.. +..+ .+..+++.+|++
T Consensus 97 -~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 97 -QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK 154 (412)
T ss_pred -CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 789999999999755433233455556666555543 3333 345556678875
No 33
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=96.70 E-value=0.0099 Score=59.77 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~ 472 (528)
.+.+.+.+++.+...||.|+.|-.|...+..... ......++.+ +..+ +.+.-+||+.+.|++.+.++.|.+. ..|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~-~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRK-SGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhccc-ccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 4567889999999999999999999987642211 1111123456 7666 3456799999999999999987654 578
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHH------HHHHHHHhcCCe
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE------VIYLTVLTKNFT 522 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~------~i~~~l~~~~~~ 522 (528)
+|+|.+|+||..........++...+++=+.|...-.. .+..++..+|++
T Consensus 83 ~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~ 138 (261)
T cd00773 83 LKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK 138 (261)
T ss_pred eEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 99999999997655433345666677775566543322 345556677754
No 34
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.48 E-value=0.019 Score=61.36 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHH-hccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~-~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
.+.+.+++++.+...||.|+.|-+|-..+. +.. .+... ....+ +.++.+.+.-.||+=+.+++.+.++.|.+...|
T Consensus 24 ~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~-~~~~~g~~~-~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~p 101 (392)
T PRK12421 24 IERLRRRLLDLFASRGYQLVMPPLIEYLES-LLTGAGQDL-KLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNREGV 101 (392)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCcchhhHHH-HhccCCccc-hhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCCCc
Confidence 345788899999999999999999965443 221 11111 13456 888766666789999999999998887655668
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHHH---HHHHHHhcCCe-eee
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFEV---IYLTVLTKNFT-CEL 525 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~~---i~~~l~~~~~~-~~~ 525 (528)
+|+|=+|+||..........++...+++=+-|.. ++.+. +...++.+|++ +.+
T Consensus 102 ~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~~~~l 161 (392)
T PRK12421 102 ARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVPALHL 161 (392)
T ss_pred eEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999654332223466777887776753 33343 44556688874 443
No 35
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.38 E-value=0.019 Score=59.04 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
+.+.+++++.+...||.|+.|-+|...+......+.. .++.+ +..+ +.+.-.||+-+.+++.+.++.|.+...|.|
T Consensus 14 ~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~r 90 (311)
T PF13393_consen 14 ERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPKR 90 (311)
T ss_dssp HHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCce
Confidence 4578899999999999999999998766433322211 24677 8887 888899999999999999999976567899
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHHH---HHHHHH-hcCC
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFEV---IYLTVL-TKNF 521 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~~---i~~~l~-~~~~ 521 (528)
+|-+|.||..........++...+++=+-|.. ++.+. +..+++ .+|+
T Consensus 91 ~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~ 144 (311)
T PF13393_consen 91 YYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGL 144 (311)
T ss_dssp EEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999766443345677778888777764 23333 444554 6665
No 36
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=96.35 E-value=0.023 Score=60.63 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC--CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~--~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~- 468 (528)
...+++.+.+++.+...||+|+.|-+|...+......+... ..++.+ +..+ +.+.-+||+-+.|++.+.++.|..
T Consensus 15 ~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~ 93 (397)
T TIGR00442 15 IKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKLL 93 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhcccc
Confidence 44567889999999999999999999987664222111110 012345 6655 455668999999999999987754
Q ss_pred CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCH---HH---HHHHHHhcCCe
Q 009703 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF---EV---IYLTVLTKNFT 522 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f---~~---i~~~l~~~~~~ 522 (528)
+..|.|+|.+|+||..+.......++...+++=+.|...-. +. +..++..+|++
T Consensus 94 ~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~ 153 (397)
T TIGR00442 94 LPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK 153 (397)
T ss_pred cCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35689999999999755433333566667777666654332 32 34456677875
No 37
>PLN02530 histidine-tRNA ligase
Probab=96.09 E-value=0.03 Score=61.56 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~ 472 (528)
.+.+.+.+++.+...||+|+.|-.|-..+......+.. ..++.+ +..+ +.+.=+||+-+.|++.+.++.|.+. ..|
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~-~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P 164 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEE-ITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLP 164 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcc-cccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCC
Confidence 44578889999999999999999998765421111111 113455 6654 4455699999999999999987653 578
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecC---CCCHHH---HHHHHHhcCCe
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFEV---IYLTVLTKNFT 522 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~f~~---i~~~l~~~~~~ 522 (528)
+|+|.+|+||..+.......++...+++=+-|. .++.|. +...+..+|++
T Consensus 165 ~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~ 220 (487)
T PLN02530 165 LKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGIT 220 (487)
T ss_pred eEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 999999999975543222345666666644443 244444 34445688874
No 38
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=96.07 E-value=0.043 Score=59.41 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC--CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--C
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~--~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (528)
.+.+.+.+++.+...||+|+.|-+|-..+......+...+ .++.. +..+ +.+.-+||+-+.|++.+.++.|.. +
T Consensus 21 ~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~ 99 (430)
T CHL00201 21 WQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYH 99 (430)
T ss_pred HHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHcccccc
Confidence 3457888999999999999999999987743222121111 13445 6554 445568999999999999777654 2
Q ss_pred CCCccEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHH---HHHHHHHhcCCe
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFE---VIYLTVLTKNFT 522 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~---~i~~~l~~~~~~ 522 (528)
..|+|+|++|.||..+.......|+...+++=+-|.. ++.+ -+...|..+|++
T Consensus 100 ~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~ 158 (430)
T CHL00201 100 SNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVK 158 (430)
T ss_pred CCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCC
Confidence 3579999999999765433233456556666455543 3333 356667788875
No 39
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=95.97 E-value=0.045 Score=59.09 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
.+.+.+++++.+...||.|+.|-.|-..+......+... ..+..+ +..+ +...=+||+-+.+++.+.++.|.+.+.|
T Consensus 21 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~~p 99 (423)
T PRK12420 21 RNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIRLP 99 (423)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCCCC
Confidence 345788899999999999999988887653211111111 113456 7776 4555689999999999999998655668
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecC---CCCHHH---HHHHHHhcCCeeee
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFEV---IYLTVLTKNFTCEL 525 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~f~~---i~~~l~~~~~~~~~ 525 (528)
+|+|.+|+||..+.......++...+++=+-|. .+..+. +...++.+|+++.+
T Consensus 100 ~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~~~~i 158 (423)
T PRK12420 100 FKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNLEVTI 158 (423)
T ss_pred eeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCCCEEE
Confidence 999999999975543223345666666645443 344443 44556678876554
No 40
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=95.73 E-value=0.038 Score=54.16 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhc-cCCCCCcce-eeCCcc---cchhHHHhhhHHHHHHHHHHccCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKDH 469 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~-~~~~~~~~v-l~NP~s---~e~~~lR~SLlpgLL~~~~~N~~~ 469 (528)
.+.+.+.+++.+...||+|+.+-.|...+. +...+ .....+... +..+-. .+.-+||+..-|++....+.+...
T Consensus 5 ~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~ 83 (235)
T cd00670 5 WRALERFLDDRMAEYGYQEILFPFLAPTVL-FFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILS 83 (235)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEcCHHH-HhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCcc
Confidence 356788899999999999999999998775 33222 111112344 655431 344589999999999998887653
Q ss_pred --CCCccEEEeeeeeecCCCcc---cCcccccEEEEEEecCC--------CCHHHHHHHHHhcCCeeeee
Q 009703 470 --PKPIKIYEVGDVVLLDEKKD---VGASCRRRLAALYCGAN--------SGFEVIYLTVLTKNFTCELN 526 (528)
Q Consensus 470 --~~~~~lFEiG~V~~~~~~~~---~~~~~~~~l~~~~~~~~--------~~f~~i~~~l~~~~~~~~~~ 526 (528)
..|++++++|+||..+.... ...++.....+-+.+.. .-+..++.+++.+|+.+.+.
T Consensus 84 ~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~ 153 (235)
T cd00670 84 YRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVV 153 (235)
T ss_pred chhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 57899999999997654421 12245555555555543 12334666677888876653
No 41
>PLN02788 phenylalanine-tRNA synthetase
Probab=95.54 E-value=0.13 Score=54.98 Aligned_cols=130 Identities=14% Similarity=0.058 Sum_probs=90.9
Q ss_pred CCCCCCCCCCC-----C--CCChhHHHHHHHHHHHHHC---CCceeec-ccccChHHHHHHhccCCC--C---Ccce-ee
Q 009703 379 YNNIPKRKPAS-----V--KPLALNEFSDLMRLEIAMN---GFTEVLT-WILCSSKEISTMLNRQTD--E---STAV-VG 441 (528)
Q Consensus 379 ydni~~~~p~~-----~--~~~~~~~~~~~lR~~l~~~---Gf~Ev~t-~sL~s~~~~~~~~~~~~~--~---~~~v-l~ 441 (528)
+.|+|+..-.. . ..+|...+.+.+++.+.++ ||.++-. ....+...||+.++.+.+ + .+.. |
T Consensus 47 ~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~- 125 (402)
T PLN02788 47 TNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV- 125 (402)
T ss_pred cCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-
Confidence 66776543221 1 6789999999999999998 9998876 778888889998887642 1 2334 5
Q ss_pred CCcccchhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEec------------CCCCH
Q 009703 442 NPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG------------ANSGF 509 (528)
Q Consensus 442 NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~------------~~~~f 509 (528)
| +-.+|||.--+.-.+.++.+. -++|=+|+||..|.-.-+..-....+=++... ....+
T Consensus 126 ~----~~~lLRTHTSa~q~~~l~~~~-----~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~ 196 (402)
T PLN02788 126 D----AQTVLRCHTSAHQAELLRAGH-----THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAA 196 (402)
T ss_pred c----CCccccCCCcHHHHHHHHhCC-----CcEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCH
Confidence 3 357999999999999998632 28999999999875211222223334333332 23679
Q ss_pred HHHHHHHHh
Q 009703 510 EVIYLTVLT 518 (528)
Q Consensus 510 ~~i~~~l~~ 518 (528)
.++|++|+.
T Consensus 197 ~dLKg~Le~ 205 (402)
T PLN02788 197 EDLKKTLEG 205 (402)
T ss_pred HHHHHHHHH
Confidence 999999884
No 42
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.40 E-value=0.073 Score=56.84 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-CCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~~ 473 (528)
+.+.+++++.+...||.|+.|-+|-..+......+.. ..++.+ +..+.+...-+||+-+.+++.+.++.|.+. ..|+
T Consensus 21 ~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~-~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 99 (391)
T PRK12292 21 EEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI-LDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPL 99 (391)
T ss_pred HHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc-chhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCCe
Confidence 4577889999999999999999998655321111111 113456 666545566799999999999999987643 5689
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHHH---HHHHHHhcCCe
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFEV---IYLTVLTKNFT 522 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~~---i~~~l~~~~~~ 522 (528)
|+|.+|.||..+.......++...+++=+-|.. ++.+. +...+..+|++
T Consensus 100 r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 100 RLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP 154 (391)
T ss_pred EEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 999999999765433334567777777666654 33443 34445577764
No 43
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=95.13 E-value=0.11 Score=53.81 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-CCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~~ 472 (528)
.+.+.+.+++.+...||.|+.|-+|-..+......+ . ..++.+ +..+- .+.-+||+-+.|++.+.++.+.+ ...|
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~-~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~p 87 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-I-LNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPLP 87 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-c-chhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCCC
Confidence 456788899999999999999988887664322211 1 123455 66654 45668999999999999887754 3468
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHHHH---HHHHHhcCCe
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFEVI---YLTVLTKNFT 522 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~~i---~~~l~~~~~~ 522 (528)
+|+|.+|.||..........++...+++=+-|.. ++.+.| ...+..+|++
T Consensus 88 ~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~ 143 (314)
T TIGR00443 88 LRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLK 143 (314)
T ss_pred eEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 9999999999866543344566667776555543 333333 3344566663
No 44
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=94.96 E-value=0.068 Score=59.73 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=61.9
Q ss_pred CeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHH
Q 009703 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (528)
++|.++.+.+.+++|.+++.+++.++|..+|++++.. + | .+++.+|+-|+|+..-.=|
T Consensus 278 ~~i~~~~~~i~~~lG~~l~~~ei~~iL~~Lg~~v~~~-~--------------------~-~~~v~vP~~R~DI~~~~Dl 335 (551)
T TIGR00471 278 RFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQS-D--------------------E-KLKVVIPAYRVDILHEVDI 335 (551)
T ss_pred ceEEecHHHHHHHhCCCCCHHHHHHHHHHhCCCeEec-C--------------------C-cEEEEcCCCccccCchhHH
Confidence 4699999999999999999999999999999998421 1 1 3899999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 009703 82 AQALRVFNKQQEI 94 (528)
Q Consensus 82 ARel~~~~~~~~~ 94 (528)
+-|++-++|-..+
T Consensus 336 iEEIaR~yGyd~I 348 (551)
T TIGR00471 336 IEDVAIGYGYNNF 348 (551)
T ss_pred HHHHHHHhCcccC
Confidence 9999999885433
No 45
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.44 E-value=0.1 Score=58.42 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=62.0
Q ss_pred CeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHH
Q 009703 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (528)
++|.++.+.+.+++|.+++.+++.+.|..+|++++.. + ..+.|.+|+.|+|+..-.=|
T Consensus 275 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~~~~~-~---------------------~~~~v~vP~~R~DI~~~~Dl 332 (552)
T PRK09616 275 RTREVSVEYINKLLGIDLSAEEIIELLERMRYDAEIG-D---------------------DKVKVTVPPYRVDILHEVDV 332 (552)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHcCCCcEec-C---------------------CeEEEEeCCCcccccccchH
Confidence 3699999999999999999999999999999998522 1 14889999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 009703 82 AQALRVFNKQQEI 94 (528)
Q Consensus 82 ARel~~~~~~~~~ 94 (528)
+-|++-++|-..+
T Consensus 333 iEEiaR~yGyd~i 345 (552)
T PRK09616 333 IEDVAIAYGYNNL 345 (552)
T ss_pred HHHHHHHhCcccC
Confidence 9999999885433
No 46
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.22 E-value=0.11 Score=60.58 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=62.5
Q ss_pred CeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHH
Q 009703 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (528)
++|.++.+.+.+++|.+++.+++.+.|..+|++++... +..++|.+|+.|+|+..-.=|
T Consensus 401 ~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~---------------------~~~~~V~vPs~R~DI~~~~Dl 459 (791)
T PRK00629 401 PTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVD---------------------GDGLTVTVPSWRFDIEIEEDL 459 (791)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecC---------------------CCeEEEECCCCccccCcccHH
Confidence 36999999999999999999999999999999995321 014899999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 009703 82 AQALRVFNKQQEI 94 (528)
Q Consensus 82 ARel~~~~~~~~~ 94 (528)
+-|++-++|-..+
T Consensus 460 iEEI~RiyGyd~i 472 (791)
T PRK00629 460 VEEVARIYGYDNI 472 (791)
T ss_pred HHHHHHHhCcccC
Confidence 9999999985433
No 47
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.09 E-value=0.25 Score=50.47 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-CCCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~~~ 473 (528)
+.+.+.+++.+...||+|+.|-+|-.-+. +.... .++.+ +..+ +.+.-+||+=+.+++.+.++.|.+ ...|.
T Consensus 23 ~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~----~~~~~-~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 23 REIENVASEILYENGFEEIVTPFFSYHQH----QSIAD-EKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHcCCeEeeccceeehhh----hcccc-hhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 45678889999999999999999964432 21111 13455 7666 566779999999999999988764 45689
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHH---HHHHHHhcCCeeee
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEV---IYLTVLTKNFTCEL 525 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~---i~~~l~~~~~~~~~ 525 (528)
|+|-+|+||.... ++...+++=+-|..+-.+. +...++.+|+++.+
T Consensus 97 r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~lgl~~~i 145 (281)
T PRK12293 97 KWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEELELEPIL 145 (281)
T ss_pred eEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 9999999996432 4566677666666543222 33445678876443
No 48
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.83 E-value=0.66 Score=49.34 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
....+.+++++.+...||.|+.|-+|-..+......+... .+..+ +..+ +.+.-+||+-+.+++.+..+.| +...|
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~-~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~-~~~~p 82 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDI-RRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT-AGGEP 82 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchh-hcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc-CCCCC
Confidence 3456889999999999999999999987654222111111 12355 7666 4456699999999999987776 44568
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCC----CCHHH---HHHHHHhcCCe
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN----SGFEV---IYLTVLTKNFT 522 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~----~~f~~---i~~~l~~~~~~ 522 (528)
.|+|=+|.||..+. ...++...+++=+-|.. ++.|. +...|+.+|++
T Consensus 83 ~R~~Y~g~VfR~~~---gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~ 136 (373)
T PRK12295 83 ARYAYLGEVFRQRR---DRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG 136 (373)
T ss_pred eEEEEEccEEECCC---CCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC
Confidence 99999999997552 24567777887666642 24444 44456677764
No 49
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=93.73 E-value=0.46 Score=53.34 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhh----hHHHHHHHHHHcc
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTT----LMPGILKTIGHNK 467 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~S----LlpgLL~~~~~N~ 467 (528)
-.+++.+.+|+.|...||+|+.+-.|...+ .+..-+..+. +++.. +......+ =+||++ +.+-+-+.+..
T Consensus 49 v~~~I~~~i~~~~~~~G~~ei~~P~l~~~e-l~~~sg~~~~~~~emf~~~dr~~~~-l~LrPT~Ee~~t~~~~~~i~s-- 124 (568)
T TIGR00409 49 VLKKVENIVREEMNKDGAIEVLLPALQPAE-LWQESGRWDTYGPELLRLKDRKGRE-FVLGPTHEEVITDLARNEIKS-- 124 (568)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccchHH-HHhhcCCCCccchhcEEEecCCCCE-EEEcCCCcHHHHHHHHHHHhh--
Confidence 356788999999999999999999999855 3433222111 13444 66544444 378886 44333223332
Q ss_pred CCCCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCHHHH----HHHHHhcCCeeee
Q 009703 468 DHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFEVI----YLTVLTKNFTCEL 525 (528)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f~~i----~~~l~~~~~~~~~ 525 (528)
.+.+|+++|.+|.+|..+.....| .++.....+-..+.+ ..+..+ +.+++++|+.+..
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~~ 194 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFRP 194 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcceE
Confidence 245899999999999755222222 355444444333432 123332 6778899997654
No 50
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=93.71 E-value=0.43 Score=53.55 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--C
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (528)
-.+++.+.+|+.|...||+|+.+-.|...+. +..-+..+. +++.. +.....+++ +||++--+.+...++...+ +
T Consensus 49 ~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~~~l-~LrPt~e~~~~~~~~~~~~s~~ 126 (565)
T PRK09194 49 VLRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEEYGPELLRLKDRHGRDF-VLGPTHEEVITDLVRNEIKSYK 126 (565)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECcccCcHHH-HhhcCCccccchhceEEecCCCCEE-EECCCChHHHHHHHHhhhhhcc
Confidence 3456888999999999999999999988775 332222111 13445 665444443 6888555444444444433 3
Q ss_pred CCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCHHHH----HHHHHhcCCeeeee
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFEVI----YLTVLTKNFTCELN 526 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f~~i----~~~l~~~~~~~~~~ 526 (528)
.+|+|+|++|.+|..+.....| .++.....+-..+.+ +.++.+ +.+++.||+.+...
T Consensus 127 ~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~ 195 (565)
T PRK09194 127 QLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAV 195 (565)
T ss_pred cCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEE
Confidence 5799999999999755232233 455555555444432 223333 67788999986653
No 51
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=93.69 E-value=0.15 Score=57.64 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=60.9
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.++.+++.+++|.+++.+++.++|..+|++++.... ++..+++.+|+.|.|++.-.=|+
T Consensus 311 ~i~~~~~~i~~~lG~~l~~~ei~~iL~~l~~~~~~~~~-------------------~~~~~~V~vP~~R~DI~~~~Dii 371 (597)
T PLN02265 311 TMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQSSD-------------------DGCTIRVSVPPTRSDILHPCDVA 371 (597)
T ss_pred eEEeeHHHHHHHhCCCCCHHHHHHHHHHCCCCeEeccc-------------------CCCceEEEcCCccccccchhhhh
Confidence 58899999999999999999999999999999853110 11148999999999999999999
Q ss_pred HHHHHHcCCC
Q 009703 83 QALRVFNKQQ 92 (528)
Q Consensus 83 Rel~~~~~~~ 92 (528)
-|++.++|-.
T Consensus 372 EEVar~yGyd 381 (597)
T PLN02265 372 EDVAIAYGYN 381 (597)
T ss_pred hhhHheeccc
Confidence 9999998853
No 52
>PLN02972 Histidyl-tRNA synthetase
Probab=93.07 E-value=0.71 Score=53.08 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
+.+.+.+++.+...||.|+.|-+|-..+......+ .+.+..+ +..+ +-+.-.||+-+.+++.+.++.|.. .|+|
T Consensus 345 e~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~G--ed~k~mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~--~p~K 419 (763)
T PLN02972 345 EKAFSIITSVFKRHGATALDTPVFELRETLMGKYG--EDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNGI--TSFK 419 (763)
T ss_pred HHHHHHHHHHHHHcCCEEccCCcccchHHhhcccC--cchhheEEEECC-CCCEEEeCCCChHHHHHHHHhCCC--Ccce
Confidence 45678889999999999999999976553211111 1113455 7665 344568999999999999998753 3789
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCC----CCHHH---HHHHHHhcCCe
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGAN----SGFEV---IYLTVLTKNFT 522 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~----~~f~~---i~~~l~~~~~~ 522 (528)
.|-+|+||..+.......++...+++=+.|.. ++.|. +..+|+.+|++
T Consensus 420 rYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~ 474 (763)
T PLN02972 420 RYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIG 474 (763)
T ss_pred EEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCC
Confidence 99999999765443333567778888676652 34444 44456678863
No 53
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=93.04 E-value=0.21 Score=58.26 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=61.6
Q ss_pred CeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHH
Q 009703 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (528)
.+|.++.+.+.+++|.+++.+|+.++|..+|++++.. + + .++|.+|+.|.|+..-.=|
T Consensus 406 ~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~-~--------------------~-~~~V~vP~~R~DI~~~~Dl 463 (798)
T TIGR00472 406 KKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQ-K--------------------D-GWEVTVPSYRHDITIEEDL 463 (798)
T ss_pred eEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEec-C--------------------C-eEEEECCCCccccccchhh
Confidence 3689999999999999999999999999999999531 1 1 4889999999999999999
Q ss_pred HHHHHHHcCCCC
Q 009703 82 AQALRVFNKQQE 93 (528)
Q Consensus 82 ARel~~~~~~~~ 93 (528)
+-|++-++|-..
T Consensus 464 iEEI~R~yGydn 475 (798)
T TIGR00472 464 IEEIARIYGYDN 475 (798)
T ss_pred HhhhhhhhCccc
Confidence 999999988533
No 54
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=93.00 E-value=0.29 Score=54.92 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--C
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (528)
..+.+.+.+++.+...||+|+.|-.|.+.+. +...+..+. .++.. +... ..+.-+||+.-.|+.....+.+.+ +
T Consensus 208 ~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l-~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~ 285 (575)
T PRK12305 208 IRREIEDYLRKEHLKRGYEFVYTPHIGKSDL-WKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYR 285 (575)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCChh
Confidence 3456888999999999999999999999885 333221110 12334 4322 345568999999998888887764 3
Q ss_pred CCCccEEEeeeeeecCCCcc-cC---cccccEEEEEEecCCC----C----HHHHHHHHHhcCCe
Q 009703 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANS----G----FEVIYLTVLTKNFT 522 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~~~~~----~----f~~i~~~l~~~~~~ 522 (528)
..|+|+|++|.||....... .| .++.....+-+-+... . +.-+..++..||++
T Consensus 286 ~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~ 350 (575)
T PRK12305 286 DLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350 (575)
T ss_pred hCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999997654321 12 2444444443332211 1 22345566788886
No 55
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=92.99 E-value=0.51 Score=49.07 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHH-HHHHhccCC-----CCCcce-eeCCcccc----------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE-ISTMLNRQT-----DESTAV-VGNPRTSD---------------- 447 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~-~~~~~~~~~-----~~~~~v-l~NP~s~e---------------- 447 (528)
..+|..+.+...|+++..+||+|+-|..++-..- +|+.+..+. +..+.. |.+|.+..
T Consensus 210 ~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~ 289 (483)
T KOG2784|consen 210 HLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQ 289 (483)
T ss_pred ccchHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhc
Confidence 7899999999999999999999999998886442 233322111 122456 88887653
Q ss_pred ------------------hhHHHhh---hHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCC
Q 009703 448 ------------------FEVVRTT---LMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN 506 (528)
Q Consensus 448 ------------------~~~lR~S---LlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~ 506 (528)
-.+|||. .-.-+|-.++. +-..|.|+|-|-+||....-.-+...+...+-+++|+..
T Consensus 290 G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk--~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~g 367 (483)
T KOG2784|consen 290 GGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAK--KGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKG 367 (483)
T ss_pred CCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHh--CCCCcccccchhhhhhccccchHHHHHHhhhceeeecCC
Confidence 1355653 33445555552 223579999999999633211122234556778999999
Q ss_pred CCHHHHHHHHH
Q 009703 507 SGFEVIYLTVL 517 (528)
Q Consensus 507 ~~f~~i~~~l~ 517 (528)
-.+-++-|+|.
T Consensus 368 ltLgdLig~l~ 378 (483)
T KOG2784|consen 368 LTLGDLIGILM 378 (483)
T ss_pred CcHHHHHHHHH
Confidence 99999999887
No 56
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=92.85 E-value=0.5 Score=48.55 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.|-.|...+.. ...+..+ ..++.. +.. ..+--+||+.-.|++....+.+.. +.
T Consensus 33 ~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~~ 109 (298)
T cd00771 33 RNELEDFLRELQRKRGYQEVETPIIYNKELW-ETSGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYRD 109 (298)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeecCHHHH-hhCCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchhh
Confidence 4557888899999999999999999998753 3222211 112344 522 223457999999999888877543 35
Q ss_pred CCccEEEeeeeeecCCCcc-cC---cccccEEEE-EEecCCCCH-------HHHHHHHHhcCCe
Q 009703 471 KPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAA-LYCGANSGF-------EVIYLTVLTKNFT 522 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~-~~~~~~~~f-------~~i~~~l~~~~~~ 522 (528)
+|+|++++|.||....+.. .| .++.....+ +++..+... .-++.+++.+|+.
T Consensus 110 LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~ 173 (298)
T cd00771 110 LPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF 173 (298)
T ss_pred CCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999997665432 11 234334443 233333222 2344666688875
No 57
>PLN02908 threonyl-tRNA synthetase
Probab=92.81 E-value=0.33 Score=55.71 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH- 469 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~- 469 (528)
.-.+.+.+.+|+.+...||+|+.|-.+.+.+.. ..-+.... .++.. + -+..+--.||+..-|++....+...+.
T Consensus 322 ~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~-~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~s~ 398 (686)
T PLN02908 322 RIYNKLMDFIREQYWERGYDEVITPNIYNMDLW-ETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVRSY 398 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhccccCh
Confidence 344678899999999999999999999998853 32222211 12222 3 123455689999999999887765552
Q ss_pred -CCCccEEEeeeeeecCCCcc-cC---cccccEEEE-EEecCC-------CCHHHHHHHHHhcCCeeee
Q 009703 470 -PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAA-LYCGAN-------SGFEVIYLTVLTKNFTCEL 525 (528)
Q Consensus 470 -~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~-~~~~~~-------~~f~~i~~~l~~~~~~~~~ 525 (528)
.+|+|++++|.+|..+.++. .| .++....-+ ++|... .-+.-++.++..+|+.+.+
T Consensus 399 r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~ 467 (686)
T PLN02908 399 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYEL 467 (686)
T ss_pred hhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 47999999999987654421 12 233222222 333322 1223456667789998765
No 58
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=92.33 E-value=0.53 Score=53.51 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC--
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-- 469 (528)
..+.+.+.+++.+...||+|+.|-.|.+.+. +...+..+. .++.. +.. .+.+.-+||+.-.|+.....+.+.+.
T Consensus 272 ~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l-~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~~~~s~~ 349 (638)
T PRK00413 272 IRRELERYIRRKLRKAGYQEVKTPQILDREL-WETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQGLRSYR 349 (638)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeCCHHH-HHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhCcCCChh
Confidence 3456788899999999999999999999885 332221110 12333 433 24455699999999999999887663
Q ss_pred CCCccEEEeeeeeecCCCcc-cC---cccccEEEEEEecCCC----C----HHHHHHHHHhcCCe-eee
Q 009703 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANS----G----FEVIYLTVLTKNFT-CEL 525 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~~~~~----~----f~~i~~~l~~~~~~-~~~ 525 (528)
..|+|+|++|.||..+.... .| .++.....+=+-|... . +.-+..++..+|++ +.+
T Consensus 350 ~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~~~~i 418 (638)
T PRK00413 350 DLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEV 418 (638)
T ss_pred hCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 56999999999997654321 12 3454455543333321 2 22345667789994 443
No 59
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=92.30 E-value=0.36 Score=55.53 Aligned_cols=73 Identities=8% Similarity=0.181 Sum_probs=61.5
Q ss_pred CeEEecHHHHHHHhCC-----C---CCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcc
Q 009703 2 PTVSVGRDRLFAALGK-----S---YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRY 73 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~-----~---~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~ 73 (528)
++|.++.+++.+++|. + ++.+++.+.|..+|++++... ++..+.+.+|+.|+
T Consensus 303 ~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~--------------------~~~~~~V~vP~~R~ 362 (704)
T CHL00192 303 RRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDS--------------------LKLNWEVLIPSYRK 362 (704)
T ss_pred eeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecC--------------------CCceEEEEcCCCCc
Confidence 4699999999999997 7 999999999999999985210 11148899999998
Q ss_pred -ccccHHHHHHHHHHHcCCCCC
Q 009703 74 -DLLCLEGIAQALRVFNKQQEI 94 (528)
Q Consensus 74 -Dlls~~GiARel~~~~~~~~~ 94 (528)
|+..-.=|+-|++-++|-..+
T Consensus 363 ~DI~~~~DliEEIaRiyGYdnI 384 (704)
T CHL00192 363 DDIVREIDVIEEIARIYGFNNF 384 (704)
T ss_pred hhcCchhHHHHHHHHhcCcccC
Confidence 999999999999999985433
No 60
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=92.24 E-value=0.41 Score=53.56 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC--
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-- 469 (528)
-.+.+.+.+|+.+...||+|+.|-.|.+.+. +...+..+. .++.. +.. ...+.-+|||.-.|++....+.+...
T Consensus 202 ~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 202 IRNLLEDFVRQKQIKYGYMEVETPIMYDLEL-WEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 3456888999999999999999999997764 433221110 12233 332 22345679999999999999988753
Q ss_pred CCCccEEEeeeeeecCCCcc-c---CcccccEEEEE-EecCCC---CHH----HHHHHHHhcCCe
Q 009703 470 PKPIKIYEVGDVVLLDEKKD-V---GASCRRRLAAL-YCGANS---GFE----VIYLTVLTKNFT 522 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~---~~~~~~~l~~~-~~~~~~---~f~----~i~~~l~~~~~~ 522 (528)
.+|+|+|++|.+|..+.+.. . ..++.....+- ++.... .|. -+..++..||++
T Consensus 280 ~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~ 344 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFS 344 (563)
T ss_pred HCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999997654321 1 12444444442 333221 122 266677789987
No 61
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=92.21 E-value=0.24 Score=51.69 Aligned_cols=136 Identities=15% Similarity=0.256 Sum_probs=98.0
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC---------------C---------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT---------------D--------------------- 434 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~---------------~--------------------- 434 (528)
+++|......++|+.-..+||.|++|--.+.++..+..++... +
T Consensus 45 k~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~d 124 (536)
T COG2024 45 KPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPD 124 (536)
T ss_pred CcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCch
Confidence 7899999999999999999999999999998877554332110 0
Q ss_pred -------------------CCcce--eeC------------------------CcccchhHHHhhhHHHHHHHHHHccCC
Q 009703 435 -------------------ESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGHNKDH 469 (528)
Q Consensus 435 -------------------~~~~v--l~N------------------------P~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (528)
+++.+ |++ |.|. -..||+.+..|..-++++=..+
T Consensus 125 e~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s~-tlTLRSHMTsGWFItLs~i~~r 203 (536)
T COG2024 125 EKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPESS-TLTLRSHMTSGWFITLSEILKR 203 (536)
T ss_pred hhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCCCC-ceehhhhcccceeeeHHHHHhc
Confidence 01111 222 3322 2468999999998888877666
Q ss_pred C-CCccEEEeeeeeecCCCccc-CcccccEEEEEEecC----CCCHHHHHHHHHhcCCe-eeeec
Q 009703 470 P-KPIKIYEVGDVVLLDEKKDV-GASCRRRLAALYCGA----NSGFEVIYLTVLTKNFT-CELNN 527 (528)
Q Consensus 470 ~-~~~~lFEiG~V~~~~~~~~~-~~~~~~~l~~~~~~~----~~~f~~i~~~l~~~~~~-~~~~~ 527 (528)
. .|+++|-|-++|.+.+.++. ........+|++.+. ..|=....|+|+.+|++ +.|+|
T Consensus 204 ~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qfGFe~F~Frp 268 (536)
T COG2024 204 EDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQFGFEKFRFRP 268 (536)
T ss_pred cCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHhCccceeecc
Confidence 5 56999999999987665432 223445666777776 46778899999999998 88876
No 62
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=92.17 E-value=0.42 Score=53.26 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=91.1
Q ss_pred HHHhhcCCCC-CHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCC-CCCCC--
Q 009703 315 YINHTIGVSL-EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKR-KPASV-- 390 (528)
Q Consensus 315 ~i~~~LG~~l-~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~-~p~~~-- 390 (528)
.+.|+-|+.. +.++..+.|++|. .+... ++ | +|++-.+.=-+++. .|...
T Consensus 110 ~l~Riyg~~f~~~~~l~~~~~~~e-ea~~r----dH----------r-----------~lg~~l~lf~~~~~~~~G~~~~ 163 (545)
T PRK14799 110 QYVRIRGVAFETEEQLKDYLTWLE-KAEET----DH----------R-----------LIGEKLDLFSFHEEAGSGLVLF 163 (545)
T ss_pred eeEEEEEeecCCHHHHHHHHHHHH-hcccC----CH----------H-----------HHHHHcCCcccccccCCcceEE
Confidence 4566778877 5678999999976 22211 11 1 33443333223322 22222
Q ss_pred ---CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHH
Q 009703 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGH 465 (528)
Q Consensus 391 ---~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~ 465 (528)
...-.+.+.+.+|+.+...||+|+.|-.+.+.+- +..-+..+. .++.. + -+..+--+||+..-|++....+.
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL-~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~ 240 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDI-WKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKS 240 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHH-Hhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhc
Confidence 2233456788899999999999999999877664 332222110 11222 2 12235568999999999999887
Q ss_pred ccCC--CCCccEEEeeeeeecCCCc
Q 009703 466 NKDH--PKPIKIYEVGDVVLLDEKK 488 (528)
Q Consensus 466 N~~~--~~~~~lFEiG~V~~~~~~~ 488 (528)
+.+. .+|+|+||+|.||..+.+.
T Consensus 241 ~~~SyrdLPlR~~e~g~vfR~E~sg 265 (545)
T PRK14799 241 KPRTYRDLPIRFSEFGHVYRWEKKG 265 (545)
T ss_pred cccChhhCCHhhEEecceecCCCCC
Confidence 7663 5799999999999766543
No 63
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=91.96 E-value=1.2 Score=45.14 Aligned_cols=132 Identities=9% Similarity=-0.011 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-C-Ccce-eeCCcc---cchhHHHhhhHHHHHHHHHHc
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-E-STAV-VGNPRT---SDFEVVRTTLMPGILKTIGHN 466 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~-~~~v-l~NP~s---~e~~~lR~SLlpgLL~~~~~N 466 (528)
.-.+++.+.+++.+...||+|+.+-.|.+.+. +...+.... . ++.. +...-. .+-=+||++--+.+....+.+
T Consensus 33 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~-~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 33 AILDKIENVLDKMFKEHGAQNALFPFFILASF-LEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCeeccHHH-HhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 34567888899999999999999999998874 333222211 1 1222 321111 133478999999888887776
Q ss_pred cC--CCCCccEEEeeeeeecCCCcccC---cccccEEEEEEecC--C-------CCHHHHHHHHHhcC-Ceeee
Q 009703 467 KD--HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGA--N-------SGFEVIYLTVLTKN-FTCEL 525 (528)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~--~-------~~f~~i~~~l~~~~-~~~~~ 525 (528)
.+ +.+|++++++|.+|..+.....| .++....-+-..+. . .-+...+.+++.+| +.+..
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~ 185 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIE 185 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEE
Confidence 54 45799999999999765332233 23433333333322 1 12233456666788 66544
No 64
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=91.90 E-value=0.53 Score=53.63 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCC-CcceeeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-STAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~-~~~vl~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
-.+.+.+.+++.+...||+|+.|-.|.+.+. +..-+..+.. ++.... ....+.-+||+.--|++....+...+ +.
T Consensus 276 ~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sG~~~~~~~emy~~-d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~ 353 (639)
T PRK12444 276 IRNELEAFLREIQKEYNYQEVRTPFMMNQEL-WERSGHWDHYKDNMYFS-EVDNKSFALKPMNCPGHMLMFKNKLHSYRE 353 (639)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCChhhhhhhcCee-cCCCcEEEEccCCCHHHHHHHhCcccChhh
Confidence 3456889999999999999999999999885 3332221111 122211 22333446999999999999966655 24
Q ss_pred CCccEEEeeeeeecCCCcc-cC---cccccEEEE-EEecCCC-------CHHHHHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAA-LYCGANS-------GFEVIYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~-~~~~~~~-------~f~~i~~~l~~~~~~~~~ 525 (528)
+|+|+|++|.+|..+.+.. .| .++.....+ +++..+. -+.-+..++..||+++.+
T Consensus 354 LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~~~ 420 (639)
T PRK12444 354 LPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEV 420 (639)
T ss_pred CCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 6999999999997654321 12 233333322 2332221 223355777889987654
No 65
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=91.24 E-value=0.46 Score=47.70 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHcc--CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK--DHP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~--~~~ 470 (528)
.+.+.+.+++.+...||+|+.+-.|.+.+.. ..-+..+. .++.. +...-.++ =+||++--+.+-..++... ++.
T Consensus 34 ~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~sg~~~~~~~emy~~~d~~~~~-l~LrPt~e~~~t~~~~~~i~s~~~ 111 (255)
T cd00779 34 LKKIENIIREEMNKIGAQEILMPILQPAELW-KESGRWDAYGPELLRLKDRHGKE-FLLGPTHEEVITDLVANEIKSYKQ 111 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhcCCccccCcccEEEecCCCCe-EEEecCCcHHHHHHHHhccccHhh
Confidence 4567888899999999999999999987753 32122111 12344 55433333 3678874443443333322 235
Q ss_pred CCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCHHH----HHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFEV----IYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f~~----i~~~l~~~~~~~~~ 525 (528)
+|+|+|++|.||..+.....| .++.....+-..+.+ +.+++ ...+++.||+.+..
T Consensus 112 LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~ 178 (255)
T cd00779 112 LPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVK 178 (255)
T ss_pred CCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 799999999999765332232 233333333323331 12222 46678899987543
No 66
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=90.18 E-value=0.12 Score=48.30 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=54.5
Q ss_pred EeehhhhhhhccCCC-eEEEecCCCceEEEeCCCcc-cCChHHHHHhhcccccccceeecccCCCcceEEEeCCCC----
Q 009703 158 LVAIGTHDLDTLQGP-FTYEALPPSHINFVPLKQTR-DFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRT---- 231 (528)
Q Consensus 158 ~VdIgn~Dldki~~p-~~y~~~~~~~i~f~~L~~~~-~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~---- 231 (528)
-+-++.||++++.+. +..+...+.+ .|.++++.+ ...... .-+ .+....+.|+|..|.
T Consensus 49 g~p~~~~D~d~i~~~~l~l~~~~~~e-~~~~l~~~~~~~~~~~--------~vi-------~d~~~~~~i~g~~g~~~~~ 112 (174)
T smart00873 49 GQPLHAFDLDKIKGKDIPLRRAKEGE-TFETLDGKEYELDEGD--------LVI-------ADDEGPLALAGVMGGEESE 112 (174)
T ss_pred CCCCeeEcHHHcCCCeEEEEECCCCC-EEEecCCcEEecCCCC--------EEE-------EeCCcCEEEEEEecCCcce
Confidence 366788999999876 6666665434 688998632 221111 111 122334577766653
Q ss_pred ------eeecCCcccCCce-eeecCCceEE
Q 009703 232 ------VLSLPPIINGAHS-AITLKTKNVF 254 (528)
Q Consensus 232 ------vlslagIigg~~s-~It~~T~nI~ 254 (528)
+++++|+.++..+ +++..|++++
T Consensus 113 ~~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 113 VTENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred ecCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 8999999999999 9999999875
No 67
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.82 E-value=1.7 Score=47.01 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC--CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-C
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-P 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~--~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~ 470 (528)
.+.+.+.+|+.+...||.|+-|-.|-.-+......+-..+ .++.. ...- ....-.||+-+.+++.+++..|... +
T Consensus 21 ~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~ 99 (429)
T COG0124 21 REYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLP 99 (429)
T ss_pred HHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhcccccc
Confidence 3457889999999999999999999876642211111100 02223 4433 5556689999999999999998664 5
Q ss_pred CCccEEEeeeeeecCCCcccCcccccEEEEEEecC---CCCHHH---HHHHHHhcCCe-eee
Q 009703 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFEV---IYLTVLTKNFT-CEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~f~~---i~~~l~~~~~~-~~~ 525 (528)
.|+|+|=+|.||.-+.......|+.+.+++=+-|. .++.+. +..+++.+|+. +.+
T Consensus 100 ~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~~~l 161 (429)
T COG0124 100 KPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGGFTL 161 (429)
T ss_pred CCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCcEEE
Confidence 68999999999976554333457777777766665 355554 45567788887 444
No 68
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=89.29 E-value=1 Score=46.35 Aligned_cols=127 Identities=8% Similarity=-0.025 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.+-.|.+.+. .+..+... ..++.. +.+ +--+||++--+.+....+.... +.
T Consensus 55 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~ 129 (297)
T cd00770 55 ERALINFALDFLTKRGFTPVIPPFLVRKEV-MEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEEE 129 (297)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcccccHHH-HhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHhh
Confidence 456788899999999999999999999885 33333221 113344 654 3347999988888877665433 34
Q ss_pred CCccEEEeeeeeecCCCc----ccC---cccccEEE-EEEecCCC-------CHHHHHHHHHhcCCeeeee
Q 009703 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLA-ALYCGANS-------GFEVIYLTVLTKNFTCELN 526 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~-~~~~~~~~-------~f~~i~~~l~~~~~~~~~~ 526 (528)
+|+++|++|.+|...... ..| .++....- ..++..+. -...++.+++.||+.+.+.
T Consensus 130 LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~ 200 (297)
T cd00770 130 LPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVV 200 (297)
T ss_pred CCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 799999999999644321 122 23322222 23443321 2234566677899886654
No 69
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=89.12 E-value=0.98 Score=49.07 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHh---hhHHHHHHHHHHcc
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRT---TLMPGILKTIGHNK 467 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~---SLlpgLL~~~~~N~ 467 (528)
.-.+++.+.+|+.+...||+|+.|-.|.+.+.. ..-+..+. .++.. +.....+ .-+||+ .....+.+....+.
T Consensus 48 ~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~~-~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 48 KVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRHDR-EMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecCCCC-EEEEcCCCcHHHHHHHHHHhhhc
Confidence 345678899999999999999999999987743 22222111 12334 5443333 345777 34555555555542
Q ss_pred CCCCCccEEEeeeeeecC
Q 009703 468 DHPKPIKIYEVGDVVLLD 485 (528)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~ 485 (528)
+.+|+|+|++|.+|..+
T Consensus 126 -rdLPlrl~q~~~~fR~E 142 (439)
T PRK12325 126 -KDLPLNLYHIQWKFRDE 142 (439)
T ss_pred -hhhchHheEecCEecCC
Confidence 45899999999999655
No 70
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=88.07 E-value=2.9 Score=42.44 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
..+.+.+|+.|...||.|+-|-.|++..- + .+.+.. +.......-..||+|----+-..++.+. -|
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~-----~---~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~-----~~ 71 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITG-----G---AGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL-----DR 71 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCC-----c---cccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC-----Cc
Confidence 45788999999999999999999986421 0 011223 3211123334677665444333344432 28
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+|+||.||..+..+.....+...+-+-.+.. +++++-.+++
T Consensus 72 vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~--~~~dvm~~~e 112 (269)
T cd00669 72 VFEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTE 112 (269)
T ss_pred EEEEecceeCCCCCCCcccceeEEEEEEecC--CHHHHHHHHH
Confidence 9999999987643323334445555433332 6666555444
No 71
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=86.17 E-value=2 Score=34.57 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=42.6
Q ss_pred eEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEE
Q 009703 183 INFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFI 255 (528)
Q Consensus 183 i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~i 255 (528)
.+|.|.+....-+..+++. +.+...+. .+.+|+|++++ .+++++|+--++...++++|+.+-|
T Consensus 10 dri~~~g~~~~k~lKk~~~----e~kIP~~~-----R~~~Pll~~~~-~iv~v~g~~~~~~~~~~~~~~~~~i 72 (74)
T PF11734_consen 10 DRIRPAGRGGSKKLKKLFQ----EAKIPPWQ-----RDRLPLLCDGG-EIVWVPGLRVSERFSADPNTKGWRI 72 (74)
T ss_dssp SEEEBTTSSSEEEHHHHHH----HCT--HHH-----CCCSEEEEETT-EEEEETTTEEBCCGC-SSSS--EEE
T ss_pred CEEEECCCCCCchHHHHHH----HcCCCHHH-----HCcEEEEEECC-EEEEEeCeeeChhheecCCCCcEEE
Confidence 3888887654445666665 34443321 24689999977 6999999999999999999988744
No 72
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=83.01 E-value=3.9 Score=40.96 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHCC--CceeecccccChHHHHHHhccCCCCCcceeeCCcccchhHHHhhhHHHHHHHHHHccC---
Q 009703 394 ALNEFSDLMRLEIAMNG--FTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD--- 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~G--f~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP~s~e~~~lR~SLlpgLL~~~~~N~~--- 468 (528)
-.+++.+.+|+.+...| |+|+.|-.+.+... +.. .. . -.+. ..+.-+||+.+.||.+-.+++..+
T Consensus 34 l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~m-f~~---~~---g--~~d~-~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 34 LKNNIKSAWRKSFVLEEEDMLEIDSPIITPELM-FKT---SI---G--PVES-GGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeccccCCHHH-hee---ee---c--ccCC-CCcccccCCcccchHHHHHHHHHHHhC
Confidence 34568889999999885 99999999999842 221 10 0 0000 122458999999766654443322
Q ss_pred CCCCccEEEeeeeeecCC
Q 009703 469 HPKPIKIYEVGDVVLLDE 486 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~ 486 (528)
+.+|++++++|+||..+.
T Consensus 104 ~~lP~~~~qig~~fR~E~ 121 (254)
T cd00774 104 RKLPFGVAQIGKSFRNEI 121 (254)
T ss_pred CCCCchhhhhchhhcccc
Confidence 368999999999997544
No 73
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=82.33 E-value=3.2 Score=41.80 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-CCCCcce-eeCCcc---cchhHHHhhhHHHHHHHHHHccC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~~~~~~v-l~NP~s---~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
-.+.+.+.+++.+...||+|+.+-.+.+.+.....-+.. .-.++.. +.+--. .+--+||++--|.+-...+....
T Consensus 34 l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~ 113 (261)
T cd00778 34 IWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIR 113 (261)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhcc
Confidence 345678889999999999999999999876421111111 1012344 544221 23457898855555555554433
Q ss_pred --CCCCccEEEeeeeeecCCC
Q 009703 469 --HPKPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~ 487 (528)
+.+|++++++|.+|..+..
T Consensus 114 s~r~LPlr~~~~~~~fR~E~~ 134 (261)
T cd00778 114 SYRDLPLKINQWVNVFRWETK 134 (261)
T ss_pred chhhcCHHHHhhhhhccCCCC
Confidence 4479999999999975543
No 74
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=81.02 E-value=6.2 Score=40.15 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
..++++++++.+...||.|+.|-+|-.-+. +. ........... ...+.+-+.-+||+-+.|++.+.++.+. ..+.
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~-~~-~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~~~~ 85 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDW-KQ-LNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--TAAT 85 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHh-hh-ccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--CCCc
Confidence 456788999999999999999999865443 11 11100011223 3444677788999999999999988653 2357
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEec--CCCCHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCG--ANSGFEVI 512 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~--~~~~f~~i 512 (528)
|+|-+|+||..+. +...+++=+.| ..+..+++
T Consensus 86 Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 86 KVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred eEEEeccEeccCC-------CcceeceEEECCCchhHHHHH
Confidence 9999999996542 13345554445 34444444
No 75
>PRK06462 asparagine synthetase A; Reviewed
Probab=76.86 E-value=10 Score=39.77 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce--eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v--l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.++.+.+|+.|...||.||-|-.|++..+ ..+.... ..++ .....-..-..|++|---- ++.+.... -
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~--~~~~~g~--~~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g~-----~ 103 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTD--PLMGLGS--DLPVKQISIDFYGVEYYLADSMILH-KQLALRML-----G 103 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCC--CCCCccc--cCCccccccccCCCceeeccCHHHH-HHHHHhhc-----C
Confidence 35678899999999999999999986521 1111000 0111 1111112345677775333 55555331 3
Q ss_pred cEEEeeeeeecCCC
Q 009703 474 KIYEVGDVVLLDEK 487 (528)
Q Consensus 474 ~lFEiG~V~~~~~~ 487 (528)
|+||||++|..++.
T Consensus 104 rVfeI~p~FR~E~~ 117 (335)
T PRK06462 104 KIFYLSPNFRLEPV 117 (335)
T ss_pred cEEEEeccccCCCC
Confidence 89999999976553
No 76
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=76.25 E-value=16 Score=37.31 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcceeeCCc-ccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP~-s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.||-|-.|+.... . +. ....+.-.. ..+.-.|++|----|=..++.- . -|
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g~----~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g----~-~~ 71 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTP--E--GA----RDFLVPSRLHPGKFYALPQSPQLFKQLLMVSG----F-DR 71 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--CC----CCceeccccCCCceeecccCHHHHHHHHHhcC----c-Cc
Confidence 45788999999999999999999985331 0 10 111121111 1222237766543222222221 1 48
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+|+||.||..+........|...+.+=.+.. +++++-..++
T Consensus 72 v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~--~~~dlm~~~e 112 (280)
T cd00777 72 YFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIE 112 (280)
T ss_pred EEEeccceeCCCCCCCccceeEEeEeeeccC--CHHHHHHHHH
Confidence 9999999976654222223444555433433 5666555544
No 77
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=75.18 E-value=13 Score=38.60 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee---CCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~---NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
.+.+.+|+.|...||.||.|-.|++... .++.+.. +. +.-...-..|++|----|=..++...
T Consensus 27 ~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~----- 93 (335)
T PF00152_consen 27 AILQAIREFFDKRGFIEVDTPILTSSTC--------EGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL----- 93 (335)
T ss_dssp HHHHHHHHHHHHTT-EEE---SEESSSS--------SSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH-----
T ss_pred HHHHHHHHHHHhCCceEEcCceeecccc--------CccccccccccchhhhcccceecCcChHHHHhhhccccc-----
Confidence 5678899999999999999999998542 1112344 55 22222344678876665544554433
Q ss_pred ccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHH
Q 009703 473 IKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLT 515 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~ 515 (528)
-++||||.+|..++. +.....|..+|=+-.++ +++.++-.+
T Consensus 94 ~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~--~~~~~lm~~ 135 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF--ADYDDLMDL 135 (335)
T ss_dssp SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET--SSHHHHHHH
T ss_pred hhhhheecceeccCcccccchhhhhhhhhcccc--CcHHHhHHH
Confidence 389999999987654 22222344455443333 344443333
No 78
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=72.05 E-value=12 Score=42.56 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (528)
.+.+.+.+++.+...||+||.|-.+.+......+-....-.++.. +... .+--+||++=-|++....+...+ +.+
T Consensus 230 ~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~--~e~l~Lrp~~c~~~~~~~~~~~~SyrdL 307 (613)
T PRK03991 230 RDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD--KKDLMLRFAACFGQFLMLKDMTISYKNL 307 (613)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC--CceEEEecCCCHHHHHHHhCCcCchhhC
Confidence 456788899999999999999998877653221111111112334 5322 34457899989998766665543 347
Q ss_pred CccEEEeee-eeecCCC
Q 009703 472 PIKIYEVGD-VVLLDEK 487 (528)
Q Consensus 472 ~~~lFEiG~-V~~~~~~ 487 (528)
|++++|+|. +|....+
T Consensus 308 Plr~~e~~~~~fR~E~~ 324 (613)
T PRK03991 308 PLKMYELSTYSFRLEQR 324 (613)
T ss_pred ChhhheecchheeCCCC
Confidence 999999999 9976654
No 79
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=70.68 E-value=26 Score=36.52 Aligned_cols=106 Identities=12% Similarity=0.014 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHH-HHccCCCCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI-GHNKDHPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~-~~N~~~~~~~ 473 (528)
..+.+.+|+.|...||.||-|-.|++... + . ..... +.+.-.....+|++|-=- .++.+ +.. . -
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~-----~-~--~~~~f~~~~~~~~~~~yL~~Spql-~~k~ll~~g----~-~ 77 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAG-----G-A--AARPFITHHNALDMDLYLRIAPEL-YLKRLIVGG----F-E 77 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCC-----C-c--cceeEEeccCCCCcceeeccCHHH-HHHHHHhcC----C-C
Confidence 35778899999999999999999986431 0 0 01122 211112333456666422 13333 222 1 4
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
++|+||.||..++.+.....|..+|=+-.+. .++.++-.+++
T Consensus 78 ~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~--~~~~~~m~~~e 119 (329)
T cd00775 78 RVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTE 119 (329)
T ss_pred cEEEEeccccCCCCCCCCCCceEEEEEeeec--CCHHHHHHHHH
Confidence 8999999998665422122233333332222 35665544444
No 80
>PRK09350 poxB regulator PoxA; Provisional
Probab=68.51 E-value=11 Score=38.87 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e--eCC--cccchhHHHhhhHHHHHH-HHHHccCC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V--GNP--RTSDFEVVRTTLMPGILK-TIGHNKDH 469 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l--~NP--~s~e~~~lR~SLlpgLL~-~~~~N~~~ 469 (528)
..+.+.+|+.|...||.||.|-.|..-.. .+.. ..++ + .-| -.....+||+|-=-. ++ .++..
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~~----~~~~---~~~f~~~y~~~~~~~~~~~~L~~SPe~~-~kr~la~~--- 77 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQATV----TDIH---LVPFETRFVGPGASQGKTLWLMTSPEYH-MKRLLAAG--- 77 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecccC----CCcc---CCceeeeeccccccCCcceEEecCHHHH-HHHHhhcc---
Confidence 45788999999999999999999974221 0000 0111 1 100 002233677553222 33 33322
Q ss_pred CCCccEEEeeeeeecCCC
Q 009703 470 PKPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~ 487 (528)
. -|+|++|.||..++.
T Consensus 78 -~-~rvf~i~~~FR~e~~ 93 (306)
T PRK09350 78 -S-GPIFQICKSFRNEEA 93 (306)
T ss_pred -c-cceEEecceeecCCC
Confidence 2 399999999986654
No 81
>PF13592 HTH_33: Winged helix-turn helix
Probab=65.50 E-value=5.8 Score=30.52 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhcCCeEE
Q 009703 314 SYINHTIGVSLEAEEVTSLLNRMQLHAE 341 (528)
Q Consensus 314 ~~i~~~LG~~l~~~~i~~~L~~lg~~~~ 341 (528)
..|.+-.|+.++...+-++|++|||+..
T Consensus 12 ~~I~~~fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 12 AYIEEEFGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHHCCEEcHHHHHHHHHHcCCccc
Confidence 5678888999999999999999999754
No 82
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=65.43 E-value=8.3 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhc-cCCCCCcce-eeCCcc---cchhHHHhhhHHHHHHHHHHccC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~-~~~~~~~~v-l~NP~s---~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
-.+++.+.+++.+...||+|+.+-.|.+.+....... ...-.++.. +..--. .+--+||++.-|.+....+...+
T Consensus 40 i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~ 119 (472)
T TIGR00408 40 IWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVK 119 (472)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcccc
Confidence 3556788899999999999999999998775322111 110012333 543221 23448999999999977766554
Q ss_pred --CCCCccEEEeeeeeecCC
Q 009703 469 --HPKPIKIYEVGDVVLLDE 486 (528)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~ 486 (528)
+.+|++++++|.||..+.
T Consensus 120 S~rdLPlr~~q~~~vfR~E~ 139 (472)
T TIGR00408 120 SYTDLPLKINQWVNVFRYET 139 (472)
T ss_pred ChhhcCHHHhheeeeecCCC
Confidence 457999999999997554
No 83
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=64.20 E-value=26 Score=39.58 Aligned_cols=78 Identities=21% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce--eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v--l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.++.+.+|+.|...||.||-|-.|++..- +. ...+. =.|....++ +||.|---- |+.+.- .+. -
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G-----GA---~a~PF~T~~n~~d~~l-YLriSpEL~-lKrLlv---gG~-~ 322 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAG-----GA---NARPFITHHNDLDLDL-YLRIATELP-LKMLIV---GGI-D 322 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCC-----cc---cceeEEecccCCCcce-EEeecHHHH-HHHHHH---hCC-C
Confidence 35678899999999999999999987421 10 01122 224444433 677653322 333321 112 4
Q ss_pred cEEEeeeeeecCCC
Q 009703 474 KIYEVGDVVLLDEK 487 (528)
Q Consensus 474 ~lFEiG~V~~~~~~ 487 (528)
|+||||++|..++.
T Consensus 323 rVfeIgp~FRnE~~ 336 (585)
T PTZ00417 323 KVYEIGKVFRNEGI 336 (585)
T ss_pred CEEEEcccccCCCC
Confidence 89999999976553
No 84
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=63.89 E-value=8.8 Score=42.22 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCc---ccchhHHHhhhHHHHHHHHHHcc
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~---s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
.-.+.+.+.+++.+...||+|+.+-.|...+.....-+..+. .++.. +..-- ..+.-+||++.-+++....+.-.
T Consensus 45 ~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i 124 (477)
T PRK08661 45 AIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWI 124 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhh
Confidence 344567888999999999999999999988752111111110 12333 43211 13455799999777766655543
Q ss_pred C--CCCCccEEEeeeeeecCCC
Q 009703 468 D--HPKPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~ 487 (528)
+ +.+|++++++|.||.....
T Consensus 125 ~SyrdLPlrl~q~~~vfR~E~~ 146 (477)
T PRK08661 125 QSYRDLPLLYNQWVNVVRWETK 146 (477)
T ss_pred cchhhcCHHHhcccceeeCCCC
Confidence 2 4579999999999975543
No 85
>PLN02678 seryl-tRNA synthetase
Probab=63.62 E-value=31 Score=37.63 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhh---hHHHHHHHHHHccC---
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTT---LMPGILKTIGHNKD--- 468 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~S---LlpgLL~~~~~N~~--- 468 (528)
..+.+.+++.+...||+|+.+-.+++.+............++.. +.+.- ++.-.+.|+ |.|.. .|..
T Consensus 178 ~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~-~~~yLi~TaE~~l~~~h-----~~~~~s~ 251 (448)
T PLN02678 178 QALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEG-DDKYLIATSEQPLCAYH-----RGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCC-CceeeecccccccChHH-----hcccCCH
Confidence 45677778888889999999999999886443222221113444 64321 233344432 33333 2222
Q ss_pred CCCCccEEEeeeeeecCCCc----ccC---cccccEEE-EEEecCCC--CHH-------HHHHHHHhcCCeeee
Q 009703 469 HPKPIKIYEVGDVVLLDEKK----DVG---ASCRRRLA-ALYCGANS--GFE-------VIYLTVLTKNFTCEL 525 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~-~~~~~~~~--~f~-------~i~~~l~~~~~~~~~ 525 (528)
+.+|+|++++|.+|....++ ..| .++..++= +.+|.+.. ... ....++..||+.|.+
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrv 325 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQV 325 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 23699999999999765541 122 12222221 34544443 222 345667789988765
No 86
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=63.61 E-value=33 Score=37.52 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee---CCccc----chhHHHhhhHHHHHHHHHHcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRTS----DFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~---NP~s~----e~~~lR~SLlpgLL~~~~~N~ 467 (528)
..+.+.+|+.|...||.||-|-.|++..- +.+.++. +. +|.+. .-.+|++|----| +.++..
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~--------eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~g- 206 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDC--------EGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAMA- 206 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCC--------CCCCCceEeecccccccccccCCCcccccCHHHHH-HHHHhc-
Confidence 35778899999999999999999986421 0112233 42 11111 2347787765544 554422
Q ss_pred CCCCCccEEEeeeeeecCC
Q 009703 468 DHPKPIKIYEVGDVVLLDE 486 (528)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~ 486 (528)
. -|+||||++|...+
T Consensus 207 ---~-~rVf~i~~~FR~E~ 221 (450)
T PRK03932 207 ---L-GKVYTFGPTFRAEN 221 (450)
T ss_pred ---c-CCeEEeeeccccCC
Confidence 2 48999999997654
No 87
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=62.26 E-value=17 Score=39.54 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHHHHC--------CCceeecc-cccChHHHHHHhccCCC-----CCcce-eeCCcccchhHHHhhh
Q 009703 391 KPLALNEFSDLMRLEIAMN--------GFTEVLTW-ILCSSKEISTMLNRQTD-----ESTAV-VGNPRTSDFEVVRTTL 455 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~--------Gf~Ev~t~-sL~s~~~~~~~~~~~~~-----~~~~v-l~NP~s~e~~~lR~SL 455 (528)
..+|...+.+.+.+.+.++ ||+=+-.+ ...+...+|+.++.+.+ ..+.. + | +-..|||.-
T Consensus 40 ~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRTHT 114 (460)
T TIGR00469 40 EDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRAHT 114 (460)
T ss_pred CCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCCCC
Confidence 6789999999999999998 77444432 36777889998887642 12344 6 3 457999999
Q ss_pred HHHHHHHHHHccCCCCCcc--EEEeeeeeecCC
Q 009703 456 MPGILKTIGHNKDHPKPIK--IYEVGDVVLLDE 486 (528)
Q Consensus 456 lpgLL~~~~~N~~~~~~~~--lFEiG~V~~~~~ 486 (528)
-+.-.++++.+.....|++ +.=.|+||.+|.
T Consensus 115 Sa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~ 147 (460)
T TIGR00469 115 SAHELECFQGGLDDSDNIKSGFLISADVYRRDE 147 (460)
T ss_pred cHHHHHHHHhccccCCCcceeeEeecceeeCCC
Confidence 9999999997654434555 899999999886
No 88
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=60.15 E-value=48 Score=36.67 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHHHHH-HHccCCCCCc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTI-GHNKDHPKPI 473 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL~~~-~~N~~~~~~~ 473 (528)
++.+.+|+.|...||.||-|-.|++... +. ...+. . .|-...+ .+||+|-=- .|+.+ ... . -
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~-----Ga---~a~pF~t~~~~~~~~-~yL~~Spql-~lk~l~v~g----~-~ 241 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPIAG-----GA---AARPFITHHNALDID-LYLRIAPEL-YLKRLIVGG----F-E 241 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceeccCC-----Cc---cceeeeeccccCCCc-eEeccCHHH-HHHHHHhcc----C-C
Confidence 5678899999999999999999975321 10 00112 1 2322222 347766422 12332 222 1 4
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+||||++|..++.......|..+|=+=.+. +++.++-.+++
T Consensus 242 rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~--~d~~d~m~~~E 283 (491)
T PRK00484 242 RVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY--ADYNDMMDLTE 283 (491)
T ss_pred cEEEEecceecCCCCCCcCCceEEEEEEEec--CCHHHHHHHHH
Confidence 8999999997655422222233444332232 36666554444
No 89
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=59.80 E-value=13 Score=38.42 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee--CC-cccchhHHHhhhHHHHHHHHHHccCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--NP-RTSDFEVVRTTLMPGILKTIGHNKDHP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~--NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~ 470 (528)
...+.+.+|+.+...||.|+-|-.|++..-. + .+.++. +. +| -...-.+||+|=--.|=..++...
T Consensus 4 rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~-e------~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~--- 73 (304)
T TIGR00462 4 RARLLAAIRAFFAERGVLEVETPLLSPAPVT-D------PHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGS--- 73 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecCCCC-C------cCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccC---
Confidence 3467889999999999999999999964210 0 001111 11 11 112335677764332222344322
Q ss_pred CCccEEEeeeeeecCCC
Q 009703 471 KPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~ 487 (528)
-|+||||+||..++.
T Consensus 74 --~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 74 --GPIFQICKVFRNGER 88 (304)
T ss_pred --CCEEEEcCceeCCCC
Confidence 489999999976543
No 90
>PLN02837 threonine-tRNA ligase
Probab=59.34 E-value=12 Score=42.50 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (528)
.-.+.+.+.+++.....||+||.|-.+.+.+.. ..-+..+ -.++.. +.+ +..+.=++||+=.|+.....+.-.+
T Consensus 248 ~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~-~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~~Sy 325 (614)
T PLN02837 248 IVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLW-KTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKLHSY 325 (614)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCccCCHHHH-hhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCccCCh
Confidence 334567888899888999999999999998853 3222211 112233 322 2234447888888876544443322
Q ss_pred CCCCccEEEeeeeeecCCC
Q 009703 469 HPKPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~ 487 (528)
+.+|++++|+|.+|....+
T Consensus 326 rdLPlr~~~~~~~~R~E~~ 344 (614)
T PLN02837 326 RDLPIRVAELGTVYRYELS 344 (614)
T ss_pred hHCCHhhEeecccccCCCC
Confidence 3479999999999976543
No 91
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=59.02 E-value=16 Score=40.00 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=54.4
Q ss_pred EecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHHHH
Q 009703 5 SVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQA 84 (528)
Q Consensus 5 ~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiARe 84 (528)
.+.-+.+...+|.+++.+++..+|+++-+..+-+.+ + -+++.|+|-|+|.+-.=-|+-+
T Consensus 310 ~~~~~~in~~~g~~l~~~~~~~~l~RM~L~a~v~~~--------------------~-~l~v~iPptraDIlHaCDI~ED 368 (578)
T KOG2472|consen 310 TMSIQAINFAIGLNLTIEEQAYYLTRMYLKAKVIGN--------------------G-NLEVKIPPTRADILHACDIVED 368 (578)
T ss_pred eeehhhhhhhhccCCCHHHHHHHHhhhheeeEecCC--------------------C-ceEEecCCchhhhhhhhhhhhH
Confidence 345677888999999999999999988887764322 1 2999999999999999999999
Q ss_pred HHHHcC
Q 009703 85 LRVFNK 90 (528)
Q Consensus 85 l~~~~~ 90 (528)
+|..+|
T Consensus 369 ~aIAyG 374 (578)
T KOG2472|consen 369 AAIAYG 374 (578)
T ss_pred HHHHhc
Confidence 988877
No 92
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=57.88 E-value=43 Score=38.32 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.++.+.+|+.|...||.||-|-.|.+... + .+..+. + .|-... --+||+|-=--|=..+..- . -
T Consensus 237 s~I~~aiR~ff~~~gFlEVeTPiL~~~~~-----g---a~a~pF~t~~n~~~~-~~yL~~SPELylKrLivgG----~-e 302 (659)
T PTZ00385 237 HVMLQALRDYFNERNFVEVETPVLHTVAS-----G---ANAKSFVTHHNANAM-DLFLRVAPELHLKQCIVGG----M-E 302 (659)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEeeccCC-----C---CCccceEeecccCCC-CEEecCChHHHHHHHhhcc----c-C
Confidence 35678899999999999999999975321 0 001122 2 122222 2247766432222223222 2 4
Q ss_pred cEEEeeeeeecCCC
Q 009703 474 KIYEVGDVVLLDEK 487 (528)
Q Consensus 474 ~lFEiG~V~~~~~~ 487 (528)
|+||||++|..++.
T Consensus 303 rVyeIg~~FRnE~~ 316 (659)
T PTZ00385 303 RIYEIGKVFRNEDA 316 (659)
T ss_pred CEEEEeceecCCCC
Confidence 89999999976554
No 93
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=57.45 E-value=1.1e+02 Score=29.56 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=68.2
Q ss_pred eecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCC
Q 009703 246 ITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLE 325 (528)
Q Consensus 246 It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~ 325 (528)
|.-...++.|++-|.+. .+..+...+-....+.-+. . + ......++.+.|-|-.|..++
T Consensus 29 v~~k~n~l~I~i~G~~~-eike~~~~Ik~~~~~vr~k-~-----------~--------~~g~~~y~l~~i~r~a~~~vp 87 (190)
T PF09840_consen 29 VEVKGNSLKIEIQGYEK-EIKEAIRRIKELVRRVRSK-Y-----------N--------KRGLYRYSLDDIFREAGYPVP 87 (190)
T ss_pred EEEeCCEEEEEEecChH-HHHHHHHHHHHHHHHHHHH-h-----------c--------cCCceEEcHHHHHHHcCCCCC
Confidence 33344789999999987 5554444443333322110 0 0 123466788999999999999
Q ss_pred HHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhC
Q 009703 326 AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYG 378 (528)
Q Consensus 326 ~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yG 378 (528)
++-+.+.|+.+|+.++..++ . +...+| +.--.++++++.++|-
T Consensus 88 ~d~L~~~L~~~G~~ae~~~~---~--i~T~a~-----~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 88 PDLLVDALKLLGYKAEYRED---V--IKTDAP-----LEEVVELAERLSEIYK 130 (190)
T ss_pred HHHHHHHHHhCCCeeEEeCC---e--EEecCC-----HHHHHHHHHHHHHHHH
Confidence 99999999999999987532 3 454433 3345678888888876
No 94
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.08 E-value=19 Score=38.89 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (528)
...+.+.+++.+...||+|+.+-.|++.+............++.. |.+ ++ -+||++==+.+....+.... +.+
T Consensus 176 ~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~---~~-~~L~pTsE~~~~~~~~~~i~s~~~L 251 (418)
T TIGR00414 176 ERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED---TD-LYLIPTAEVPLTNLHRNEILEEEEL 251 (418)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC---CC-EEEEeCCcHHHHHHHhCcCCChHhC
Confidence 345677778899999999999999999885432221211113444 654 23 36777654455444443332 246
Q ss_pred CccEEEeeeeeecCCCc---c-cC---cccccEEE-EEEecCC---CCH----HHHHHHHHhcCCeeee
Q 009703 472 PIKIYEVGDVVLLDEKK---D-VG---ASCRRRLA-ALYCGAN---SGF----EVIYLTVLTKNFTCEL 525 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~~---~-~~---~~~~~~l~-~~~~~~~---~~f----~~i~~~l~~~~~~~~~ 525 (528)
|+++|++|.+|.....+ + .| .++....= .+++.+. .-| ...+.+++.||+.+..
T Consensus 252 Plr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~ 320 (418)
T TIGR00414 252 PIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRV 320 (418)
T ss_pred CeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 99999999999765421 1 12 22222222 2344432 122 2355667789988764
No 95
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.62 E-value=15 Score=39.23 Aligned_cols=88 Identities=19% Similarity=0.299 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
......|+.|...||.|+.|--+++...- .+.+.. +.--+..- +|-. -|.|-+.++---.. -|+
T Consensus 233 gvc~~FRe~L~~kgF~EIhTpKli~asSE--------GGanvF~v~Yfk~~A--~LAQ--SPQLyKQMaI~gdf---~rV 297 (533)
T KOG0556|consen 233 GVCFAFREYLRSKGFVEIHTPKLIGASSE--------GGANVFRVSYFKQKA--YLAQ--SPQLYKQMAICGDF---ERV 297 (533)
T ss_pred HHHHHHHHHHHhcCcceecccccccccCC--------CCceeEEEEeccCcc--hhhc--ChHHHHHHHHhcch---hhe
Confidence 46788999999999999999999875430 011222 44333333 2322 26666666543222 489
Q ss_pred EEeeeeeecCCCcccCcccccEEEEEEecC
Q 009703 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGA 505 (528)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~~~ 505 (528)
||||.||....+ ...+||+- +.|-
T Consensus 298 yeIGpVfRAEdS-----nthRhltE-FvGL 321 (533)
T KOG0556|consen 298 YEIGPVFRAEDS-----NTHRHLTE-FVGL 321 (533)
T ss_pred eeecceeecccc-----chhhhhHH-hhCc
Confidence 999999986543 24677774 4443
No 96
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=55.20 E-value=40 Score=37.53 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=68.4
Q ss_pred HHHHHHHHH-HHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCC----------------------------cc
Q 009703 397 EFSDLMRLE-IAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNP----------------------------RT 445 (528)
Q Consensus 397 ~~~~~lR~~-l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP----------------------------~s 445 (528)
.+.+.+++. ....||+|+++-.|.+.+... ..+.... .+... +..| +.
T Consensus 228 aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~-ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~ 306 (517)
T PRK00960 228 AFEKLVIEEVLKPLGFDECLFPKLIPLEVMY-KMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLR 306 (517)
T ss_pred HHHHHHHHhhHhhcCCeEEECCcccCHHHHh-hcCCccCChhhceEeeccccccccccchhhhccccccccccccccccc
Confidence 345555554 345699999988888877533 2221111 11222 4322 22
Q ss_pred cchhHHHhhhHHHHHHHHHHccC--CCCCccEEE-eeeeeecCCCcccC---cccccEEEE-EEecCCC-------CHHH
Q 009703 446 SDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVG---ASCRRRLAA-LYCGANS-------GFEV 511 (528)
Q Consensus 446 ~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFE-iG~V~~~~~~~~~~---~~~~~~l~~-~~~~~~~-------~f~~ 511 (528)
...-+||++--|......+.=.. +.+|+|+|+ .|.+|.....+-.| .++..+.=+ +++..+. -...
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKY 386 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHH
Confidence 33348999999998877763222 346999999 66999766432222 223222222 3343322 2234
Q ss_pred HHHHHHhcCCe
Q 009703 512 IYLTVLTKNFT 522 (528)
Q Consensus 512 i~~~l~~~~~~ 522 (528)
.+.+++.||+.
T Consensus 387 ~e~i~~~LgLp 397 (517)
T PRK00960 387 AHILAEKLDLE 397 (517)
T ss_pred HHHHHHHcCCC
Confidence 55556788887
No 97
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=54.96 E-value=40 Score=37.45 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce--eeCCcccchhHHHhhhHHHH-HHHH-HHccCCCCC
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGI-LKTI-GHNKDHPKP 472 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v--l~NP~s~e~~~lR~SLlpgL-L~~~-~~N~~~~~~ 472 (528)
++.+.+|+.|...||.||-|-.|.+..- +. ...+. -.|-...+ .+||+|- .| |+.+ ... .
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~g-----Ga---~a~pF~t~~~~~~~~-~yL~~Sp--ELylKrlivgG----~- 252 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPG-----GA---SARPFITHHNALDLD-MYLRIAP--ELYLKRLVVGG----F- 252 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCC-----CC---cccceecccccCCcc-eeeecCH--HHHHHHHHhcc----C-
Confidence 4678899999999999999999975321 10 00111 13433332 3577775 33 3332 222 1
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
-|+||||++|..++.+.....|..+|=+=.+. .++.++-.+++
T Consensus 253 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E 295 (505)
T PRK12445 253 ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTE 295 (505)
T ss_pred CcEEEEehhccCCCCCCCcCcccceeeeeeec--CCHHHHHHHHH
Confidence 48999999997665422222233344332222 35665444433
No 98
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=54.93 E-value=49 Score=34.39 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
..+.+.+|+.+...||.||-|-.|....- + ....+. + | ....-..||+|---- |+.+... . -+
T Consensus 28 s~i~~~ir~~f~~~gf~eV~TP~l~~~~~--e------~~~~~f~~-~-~~~~~~yL~~Spql~-lk~l~~~--~---~~ 91 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITSTDT--E------GGAELFKV-S-YFGKPAYLAQSPQLY-KEMLIAA--L---ER 91 (322)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceecCCC--C------ccCCcccc-c-cCCCcceecCCHHHH-HHHHHHh--h---hh
Confidence 35788899999999999999999987331 0 001122 2 1 111233567665543 3444432 1 37
Q ss_pred EEEeeeeeecCC
Q 009703 475 IYEVGDVVLLDE 486 (528)
Q Consensus 475 lFEiG~V~~~~~ 486 (528)
+||||.||..++
T Consensus 92 vf~i~~~FR~E~ 103 (322)
T cd00776 92 VYEIGPVFRAEK 103 (322)
T ss_pred hEEeccccccCC
Confidence 999999997654
No 99
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=54.81 E-value=39 Score=37.41 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHH-HHH-HHccCCCC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPK 471 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL-~~~-~~N~~~~~ 471 (528)
.++.+.+|+.|...||.||-|-.|++..- + .. ..+. . .|-.. .--+||.| |.|- +.+ ... .
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~g-----g-a~--a~pF~t~~~~~~-~~~yLriS--pELylKrlivgG----~ 240 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPG-----G-AN--ARPFITHHNALD-MDLYLRIA--PELYLKRLIVGG----F 240 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCC-----C-cc--ceeEEeecccCC-CceEEecC--HHHHHHHHHhCC----C
Confidence 34678899999999999999999986421 1 00 1122 2 23232 23358888 5554 333 222 1
Q ss_pred CccEEEeeeeeecCCC
Q 009703 472 PIKIYEVGDVVLLDEK 487 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~ 487 (528)
-|+||||++|...+.
T Consensus 241 -~rVfeIg~~FRnE~~ 255 (496)
T TIGR00499 241 -EKVYEIGRNFRNEGV 255 (496)
T ss_pred -CceEEEecceecCCC
Confidence 489999999976543
No 100
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=54.11 E-value=55 Score=37.82 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcceeeCC-cccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNP-RTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.||-|-.|+.... ..+...++... ...++-.|++| |.|.+-+.-- .+. -|
T Consensus 160 s~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eGAr~~~~p~~~~~~~~y~L~qS--PQlykq~lm~--~G~-~r 226 (706)
T PRK12820 160 HRIIKCARDFLDSRGFLEIETPILTKSTP--------EGARDYLVPSRIHPKEFYALPQS--PQLFKQLLMI--AGF-ER 226 (706)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCCC--------CCCcceEEeeecCCCcceecCCC--HHHHHHHHHh--ccC-Cc
Confidence 35678899999999999999999985321 00111112111 11223336655 4444433221 112 48
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+|+||++|...........|...|-+=++. .+++++-.+++
T Consensus 227 vfqI~~~FR~E~~~t~r~pEFT~LE~E~af--~d~~dvm~l~E 267 (706)
T PRK12820 227 YFQLARCFRDEDLRPNRQPEFTQLDIEASF--IDEEFIFELIE 267 (706)
T ss_pred EEEEechhcCCCCCCCcCccccccceeecc--CCHHHHHHHHH
Confidence 999999997654321111233344332222 35666555444
No 101
>PLN02850 aspartate-tRNA ligase
Probab=52.48 E-value=40 Score=37.71 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
.+.+.+|+.|...||.|+-|-.|++..- + .+.... +.- -....+|++|----+=..++... -|+
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e------gga~~F~v~y--f~~~~~L~qSpql~kq~li~~g~-----~rV 294 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGAS--E------GGSAVFRLDY--KGQPACLAQSPQLHKQMAICGDF-----RRV 294 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCC--c------cccceeeecc--CCcceecCCCHHHHHHHHHHhcC-----Cce
Confidence 4678899999999999999999976431 0 011223 321 12334676664332222222222 389
Q ss_pred EEeeeeeecCC
Q 009703 476 YEVGDVVLLDE 486 (528)
Q Consensus 476 FEiG~V~~~~~ 486 (528)
||||.||..++
T Consensus 295 feIgp~FRaE~ 305 (530)
T PLN02850 295 FEIGPVFRAED 305 (530)
T ss_pred EEEecccccCC
Confidence 99999997654
No 102
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=52.33 E-value=29 Score=38.88 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
.+.+.+|+.|...||.||-|-.|++..- + .+.+.. +. --....+|++|- .|-+-+.-- .+. -|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e------gga~~F~v~--yf~~~~~L~qSp--ql~kq~li~--~g~-~rV 282 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAPS--E------GGANVFKLE--YFNRFAYLAQSP--QLYKQMVLQ--GDV-PRV 282 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC--C------ccccccccc--cCCCCeecCCCH--HHHHHHHHh--cCC-CCE
Confidence 4678899999999999999999876431 0 011112 21 112345666664 333333221 111 489
Q ss_pred EEeeeeeecCC
Q 009703 476 YEVGDVVLLDE 486 (528)
Q Consensus 476 FEiG~V~~~~~ 486 (528)
||||.||..+.
T Consensus 283 feI~p~FRaE~ 293 (550)
T PTZ00401 283 FEVGPVFRSEN 293 (550)
T ss_pred EEEeCeEeCCC
Confidence 99999997654
No 103
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.11 E-value=27 Score=37.91 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHH-HCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CCC
Q 009703 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (528)
Q Consensus 396 ~~~~~~lR~~l~-~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (528)
+.+.+.+++.+. ..||+|+.+-.|++.+............++.. |.+ +--+|+++-=+.+....+.... +.+
T Consensus 174 ~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~dL 249 (425)
T PRK05431 174 RALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEEEL 249 (425)
T ss_pred HHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHHhC
Confidence 446666777778 89999999999999886433211111113344 653 2336777666666544444332 246
Q ss_pred CccEEEeeeeeecCCCc----ccC---cccccEE-EEEEecCC---CCHH----HHHHHHHhcCCeeee
Q 009703 472 PIKIYEVGDVVLLDEKK----DVG---ASCRRRL-AALYCGAN---SGFE----VIYLTVLTKNFTCEL 525 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~~----~~~---~~~~~~l-~~~~~~~~---~~f~----~i~~~l~~~~~~~~~ 525 (528)
|++++++|.+|.....+ ..| .++..+. +.++|.++ .-|+ ..+.+++.||+.|..
T Consensus 250 Plr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~ 318 (425)
T PRK05431 250 PLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRV 318 (425)
T ss_pred CeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999654421 112 1222222 12344432 2222 355567789988765
No 104
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=47.84 E-value=95 Score=35.17 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCccee-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.||-|-.|++... .+ +...++ .+-...++-.||+| |.|.+-+.- ..+. =|
T Consensus 142 s~i~~~iR~ff~~~gFiEVeTP~L~~s~~-------eG-ar~f~vp~~~~~~~~y~L~qS--pQlykq~l~--v~G~-er 208 (583)
T TIGR00459 142 HKVTKAVRNFLDQQGFLEIETPMLTKSTP-------EG-ARDYLVPSRVHKGEFYALPQS--PQLFKQLLM--VSGV-DR 208 (583)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeccCCC-------CC-CcceeeeeecCCCceeecCCC--HHHHHHHHH--hccc-Cc
Confidence 35778899999999999999999985321 00 011111 11011223336655 344333211 1112 48
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+||||++|..+........|...|-+=++. ++++++-.+++
T Consensus 209 vfqI~~~FR~E~~~t~r~pEFT~le~E~af--~d~~dvm~~~E 249 (583)
T TIGR00459 209 YYQIARCFRDEDLRADRQPEFTQIDMEMSF--MTQEDVMELIE 249 (583)
T ss_pred EEEEcceeeCCCCCCCCCcccCcceeeecC--CCHHHHHHHHH
Confidence 999999997654322112344455443333 35666554444
No 105
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=47.20 E-value=89 Score=33.99 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
..+.+.+|+.|...||.||-|-.|++... +.+.+++ +.- . ....+||+|---- ++.+... +. -|
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--------eg~~~~f~~~~-~-~~~~~L~~Spql~-~q~l~~~---g~-~r 204 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGT--------EGGAELFPIDY-F-EKEAYLAQSPQLY-KQMMVGA---GF-ER 204 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCC--------CCCcceEeEEe-c-CCceEecCCHHHH-HHHHHhc---CC-Cc
Confidence 34678899999999999999999975321 0012233 321 1 1233577765443 3444321 11 48
Q ss_pred EEEeeeeeecCC
Q 009703 475 IYEVGDVVLLDE 486 (528)
Q Consensus 475 lFEiG~V~~~~~ 486 (528)
+||||++|..++
T Consensus 205 Vf~i~~~FR~E~ 216 (437)
T PRK05159 205 VFEIGPVFRAEE 216 (437)
T ss_pred EEEEeceeeCCC
Confidence 999999997554
No 106
>PLN02502 lysyl-tRNA synthetase
Probab=45.62 E-value=67 Score=36.11 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
++.+.+|+.|...||.||-|-.|++..- + . ...+. . .|-.. ...+||+|-=--|=..+..- . -|
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~g-----G-A--~a~pF~t~~n~~~-~~~yL~~Spel~lK~L~v~g----~-~r 299 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAG-----G-A--AARPFVTHHNDLN-MDLYLRIATELHLKRLVVGG----F-ER 299 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCC-----C-c--cccceeeecccCC-cceeeecCHHHHHHHHHHhc----c-CC
Confidence 4668899999999999999999976321 1 0 01122 2 23322 23467776433221223222 1 48
Q ss_pred EEEeeeeeecCC
Q 009703 475 IYEVGDVVLLDE 486 (528)
Q Consensus 475 lFEiG~V~~~~~ 486 (528)
+||||++|..++
T Consensus 300 VfeIg~~FRnE~ 311 (553)
T PLN02502 300 VYEIGRQFRNEG 311 (553)
T ss_pred EEEEcCeeeCCC
Confidence 999999997654
No 107
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.17 E-value=37 Score=38.32 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
+..-.+.+.+.+|..+...||+||.|-.+.+.+. .+.-+..+ -.++.. ....- +-=++|+.--||.+.....-.+
T Consensus 219 G~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l-~~~SGH~~~y~e~mf~~~~~~--~~~~lKpmNCpgh~~ifk~~~~ 295 (589)
T COG0441 219 GATIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL-WELSGHWDNYKEDMFLTESDD--REYALKPMNCPGHILIFKSGLR 295 (589)
T ss_pred cccHHHHHHHHHHHHHHhcCceEecCCeeeeccc-chhccchhhccccceeeccCC--hhheeeeccCHhHHHHHhcCCc
Confidence 3445567899999999999999999988877664 21111110 011222 11110 2337899999999988877665
Q ss_pred --CCCCccEEEeeeeeecCCC
Q 009703 469 --HPKPIKIYEVGDVVLLDEK 487 (528)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~ 487 (528)
|..|+|++|.|.|+.-..+
T Consensus 296 SYR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 296 SYRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred ceeccchhhhhcceeecccCc
Confidence 3368999999988765544
No 108
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=42.74 E-value=1.2e+02 Score=34.52 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcceeeCC-cccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNP-RTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.||-|-.|+.... + + +.+.++... ...++-.|++| |.|.+-+.- ..+. -|
T Consensus 145 s~i~~~iR~ff~~~gFiEV~TP~L~~s~~--e--g----a~~f~v~~~~~~~~~~~L~qS--pql~kq~l~--~~g~-~r 211 (588)
T PRK00476 145 SKVTSAIRNFLDDNGFLEIETPILTKSTP--E--G----ARDYLVPSRVHPGKFYALPQS--PQLFKQLLM--VAGF-DR 211 (588)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecCCC--C--C----CccceecccccCCceeecCCC--HHHHHHHHH--hccc-Cc
Confidence 45788899999999999999999985321 0 0 011112211 12233346655 333332211 1112 48
Q ss_pred EEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+|+||++|..+.. +...+ |...|-+=.+. ++++++-.+++
T Consensus 212 vfqi~~~FR~E~~~~~r~~-EFt~le~e~af--~~~~dvm~~~E 252 (588)
T PRK00476 212 YYQIARCFRDEDLRADRQP-EFTQIDIEMSF--VTQEDVMALME 252 (588)
T ss_pred eEEEeceeecCCCCCCcCc-ccccceeeecC--CCHHHHHHHHH
Confidence 9999999976542 12222 34444432333 24555444433
No 109
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=42.01 E-value=1e+02 Score=33.51 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
.+.+.+|+.|...||.||-|-.|++..- + .+.++. +. ....-.+|++|----+=..++.. . -|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--e------g~~~~f~v~--~~~~~~yL~~Spql~~q~li~~g----~-~rV 202 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASAT--E------GGTELFPIT--YFEREAFLGQSPQLYKQQLMAAG----F-ERV 202 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCC--C------CCcceeeeE--ecCCcEEECcCHHHHHHHHHhcc----c-CcE
Confidence 4678899999999999999999986431 0 011222 21 01122346666433221223221 1 489
Q ss_pred EEeeeeeecCC
Q 009703 476 YEVGDVVLLDE 486 (528)
Q Consensus 476 FEiG~V~~~~~ 486 (528)
||||++|..++
T Consensus 203 f~i~~~FR~E~ 213 (428)
T TIGR00458 203 YEIGPIFRAEE 213 (428)
T ss_pred EEEecccccCC
Confidence 99999997654
No 110
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=38.60 E-value=50 Score=35.40 Aligned_cols=124 Identities=13% Similarity=0.071 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
...+.+++++.+...||..|.|-.|---+-.....+. ....+.. +.+..++. -+||+-+.+.+-...++-... .|.
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~-~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~-~P~ 96 (390)
T COG3705 20 KEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE-DLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG-TPL 96 (390)
T ss_pred HHHHHHHHHHHHHHhCCccccccccchhhhhhhccch-hhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC-CCc
Confidence 3457899999999999999999888765542221111 1114567 99999999 899999999999999887666 799
Q ss_pred cEEEeeeeeecCCCcccCcc-cccEEEEEEec---CCCCHHHH---HHHHHhcCCe
Q 009703 474 KIYEVGDVVLLDEKKDVGAS-CRRRLAALYCG---ANSGFEVI---YLTVLTKNFT 522 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~-~~~~l~~~~~~---~~~~f~~i---~~~l~~~~~~ 522 (528)
|+.=-|+||... +...|.. |...+++=..| -.++.+.| .+.|..+|++
T Consensus 97 Rl~Y~G~Vfr~~-~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~ 151 (390)
T COG3705 97 RLSYAGKVFRAR-EGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLA 151 (390)
T ss_pred eeeecchhhhcc-hhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCc
Confidence 999999999877 3233333 45555543333 34666654 4555566643
No 111
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=36.85 E-value=1.4e+02 Score=32.57 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee--C-C----cccchhHHHhhhHHHHHHHHHHcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--N-P----RTSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~--N-P----~s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
..+.+.+|+.|...||.||-|-.|++..- + .+.+.. +. | + .-..-.+|++| |.|-.-+..
T Consensus 140 s~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e------g~~~~F~v~~~~~~~~~~~~~~~~yL~~S--pql~lq~l~-- 207 (453)
T TIGR00457 140 NALSQAIHRYFQENGFTWVSPPILTSNDC--E------GAGELFRVSTDGIDFSQDFFGKEAYLTVS--GQLYLETYA-- 207 (453)
T ss_pred HHHHHHHHHHHHHCCCEEecCCeEeecCC--C------CCCCceEecccccccchhccCCccccccC--HHHHHHHHh--
Confidence 35678899999999999999999986331 0 011222 32 1 0 11122346666 344333321
Q ss_pred CCCCCccEEEeeeeeecCC
Q 009703 468 DHPKPIKIYEVGDVVLLDE 486 (528)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~ 486 (528)
.+. -|+||||.+|..++
T Consensus 208 -~g~-~rVf~i~~~FR~E~ 224 (453)
T TIGR00457 208 -LAL-SKVYTFGPTFRAEK 224 (453)
T ss_pred -hcc-cCceEeeeccccCC
Confidence 122 48999999997654
No 112
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=35.63 E-value=49 Score=33.02 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCC-c--cccCCcchhhhhhhhhhCCCCCCCCCCCCC-----CCC
Q 009703 322 VSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-R--SDVLHPCDVMEDVAIAYGYNNIPKRKPASV-----KPL 393 (528)
Q Consensus 322 ~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~-R--~DI~~~~DliEEIar~yGydni~~~~p~~~-----~~~ 393 (528)
..++.++|.++.+.+|+....... .. |+.-.+|.- + .+-+..++-+|+..+..||..+--..-... .+.
T Consensus 142 ~~l~K~eIr~la~~~gl~~~~~ps--~~-Cl~sr~~~g~~it~~~l~~v~~~E~~l~~~g~~~~rvr~~~~~a~ie~~~~ 218 (252)
T TIGR00268 142 FGITKKEIREIAKSLGISFPDKPS--EA-CLASRFPFGREIDEEKLKMVDEAEEVLRNAGVGQVRVRNYDNLAVIEVPED 218 (252)
T ss_pred cCCCHHHHHHHHHHcCCCccCCCC--CC-ceEeecCCCCcCCHHHHHHHHHHHHHHHHcCCCeEEEEecCCeEEEEECHH
Confidence 357899999999999998643221 12 244454433 2 245667999999999999987754322211 122
Q ss_pred hhHHH---HHHHHHHHHHCCCcee
Q 009703 394 ALNEF---SDLMRLEIAMNGFTEV 414 (528)
Q Consensus 394 ~~~~~---~~~lR~~l~~~Gf~Ev 414 (528)
...++ ...+.+.|..+||.-|
T Consensus 219 ~~~~~~~~~~~i~~~~~~~gf~~v 242 (252)
T TIGR00268 219 ELSKLLNEAEEVRDKFKDIGFRKV 242 (252)
T ss_pred HHHHHHhhHHHHHHHHHHcCCCeE
Confidence 22222 3568888999999987
No 113
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=33.57 E-value=1.6e+02 Score=36.07 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHH-HHHHHccCCCCCc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~~~ 473 (528)
++.+.+|+.|...||.||-|-.|++..- + ..-++. . .|-...+ -+||.|- .|- |.+.- .+. -
T Consensus 775 ~i~~~iR~fl~~~gFlEVeTPiL~~~~g-----G---a~a~pF~t~~~~~~~~-~yLriSP--ELylKrLiv---gG~-e 839 (1094)
T PRK02983 775 AVVRAVRETLVARGFLEVETPILQQVHG-----G---ANARPFVTHINAYDMD-LYLRIAP--ELYLKRLCV---GGV-E 839 (1094)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeeccCC-----C---cccceeEeeecCCCcc-chhhcCh--HHHHHHHHh---ccc-C
Confidence 3567799999999999999999985321 0 001112 1 2322222 3677763 332 33321 112 4
Q ss_pred cEEEeeeeeecCCC
Q 009703 474 KIYEVGDVVLLDEK 487 (528)
Q Consensus 474 ~lFEiG~V~~~~~~ 487 (528)
|+||||++|..++.
T Consensus 840 rVFEIg~~FRnE~~ 853 (1094)
T PRK02983 840 RVFELGRNFRNEGV 853 (1094)
T ss_pred ceEEEcceecCCCC
Confidence 89999999976543
No 114
>PLN02903 aminoacyl-tRNA ligase
Probab=33.32 E-value=2e+02 Score=33.00 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHH-CCCceeecccccChHHHHHHhccCCCCCcceeeCCc-ccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 396 NEFSDLMRLEIAM-NGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 396 ~~~~~~lR~~l~~-~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP~-s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.++.+.+|+.|.. .||.||-|-.|++... .+ +.+..+.... ..++-.|++| |.|.+-+.- ..+. -
T Consensus 207 s~i~~~iR~fl~~~~gFiEVeTPiL~~st~-------eG-ardf~v~~~~~~g~~y~L~qS--PQlykQ~Lm--~~G~-~ 273 (652)
T PLN02903 207 HRVVKLIRRYLEDVHGFVEIETPILSRSTP-------EG-ARDYLVPSRVQPGTFYALPQS--PQLFKQMLM--VSGF-D 273 (652)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCeeccCCC-------CC-CcccEEeeecCCCcccccCCC--HHHHHHHHH--hccC-C
Confidence 3567889999996 9999999999985431 00 1112222211 1233346665 444433221 1112 4
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+|+||++|..+........|...|-+=++. .+++++-.+++
T Consensus 274 RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf--~d~~dvm~~~E 315 (652)
T PLN02903 274 RYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLEDMLKLNE 315 (652)
T ss_pred cEEEEehhhccCCCCCCcccceeeeeeeecC--CCHHHHHHHHH
Confidence 8999999997554321111233334332222 35666555444
No 115
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=31.69 E-value=2.3e+02 Score=31.09 Aligned_cols=31 Identities=6% Similarity=-0.013 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHH--CCCceeecccccChHH
Q 009703 394 ALNEFSDLMRLEIAM--NGFTEVLTWILCSSKE 424 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~--~Gf~Ev~t~sL~s~~~ 424 (528)
-.+.+.+..|+.+.. .||.||.|-.+.+.+.
T Consensus 40 l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l 72 (456)
T PRK04173 40 LKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEV 72 (456)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEeccccCCHHH
Confidence 345678888998887 7999999999988774
No 116
>PLN02320 seryl-tRNA synthetase
Probab=27.79 E-value=1.3e+02 Score=33.46 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCC-cce-eeCCcccchhHHHhhhHHHHHHHHHHccC---CC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD---HP 470 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~-~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~---~~ 470 (528)
..+.+.+++.+...||+|+.|-.+++.+........+...+ ... +.+ +++-.+-|+=.| |.+...|.- +.
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~P--l~~~~~~~ils~~d 311 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIP--VGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC---CceEEeeccccc--ccccccccccCHhh
Confidence 35667777888888999999999999886433221111001 233 543 333221122122 111211221 34
Q ss_pred CCccEEEeeeeeecCCCc----ccCc---ccccEE-EEEEecCCC---CHH----HHHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKK----DVGA---SCRRRL-AALYCGANS---GFE----VIYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~~---~~~~~l-~~~~~~~~~---~f~----~i~~~l~~~~~~~~~ 525 (528)
+|+|+++.|.+|....++ ..|. ++..++ +.++|..+. -|+ .+..++..||+.+..
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrv 381 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKT 381 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 699999999999765441 1221 121111 234555432 222 355667789987543
No 117
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=24.78 E-value=3.8e+02 Score=29.95 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=63.4
Q ss_pred HCCCceeecccccChHHHHHHhccCCCC-Ccce-eeC----------------------------CcccchhHHHhhhHH
Q 009703 408 MNGFTEVLTWILCSSKEISTMLNRQTDE-STAV-VGN----------------------------PRTSDFEVVRTTLMP 457 (528)
Q Consensus 408 ~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~-~~~v-l~N----------------------------P~s~e~~~lR~SLlp 457 (528)
..||+|++.-.|++.+..... +..... .... +.. .+..+.-+||++--+
T Consensus 240 k~Gy~ev~fP~LIp~e~l~k~-ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ 318 (520)
T TIGR00415 240 KIGFQECLFPKLIPLDIMNKM-RYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCE 318 (520)
T ss_pred hcCCeEEeCCcEecHHHHccc-CCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHH
Confidence 459999999888888764322 211111 1222 421 223334568888888
Q ss_pred HHHHHHHHccC--CCCCccEEE-eeeeeecCCCcccCc---ccccEEEEEE-ecCC-------CCHHHHHHHHHhcCCee
Q 009703 458 GILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVGA---SCRRRLAALY-CGAN-------SGFEVIYLTVLTKNFTC 523 (528)
Q Consensus 458 gLL~~~~~N~~--~~~~~~lFE-iG~V~~~~~~~~~~~---~~~~~l~~~~-~~~~-------~~f~~i~~~l~~~~~~~ 523 (528)
.+....+.-.. +.+|+++|. .|.||.....+..|. .+..+.=++. +... ...+....+++.|++.+
T Consensus 319 ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpy 398 (520)
T TIGR00415 319 PFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEW 398 (520)
T ss_pred HHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 88777764432 346999999 558997665322221 2222222222 2222 12233455567888866
Q ss_pred ee
Q 009703 524 EL 525 (528)
Q Consensus 524 ~~ 525 (528)
..
T Consensus 399 rv 400 (520)
T TIGR00415 399 WT 400 (520)
T ss_pred EE
Confidence 54
No 118
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=22.34 E-value=1.6e+02 Score=32.13 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHH
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~ 424 (528)
+.+.+.+|+.+...||.||.|-.+++...
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~ 166 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASAT 166 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCC
Confidence 45778899999999999999999998653
No 119
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=22.26 E-value=1.9e+02 Score=23.73 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred ChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeE
Q 009703 261 DLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHA 340 (528)
Q Consensus 261 D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~ 340 (528)
|++....|+.++...+......+. ..+.|+|..+-..+.+-+|.- ....++|..+||..
T Consensus 2 ~~~~~~~al~~L~~il~NI~~~P~------------------~~kyR~Ir~~N~~f~~~i~~~---~g~~~~L~~~GF~~ 60 (87)
T PF09409_consen 2 DPEAFQKALETLEKILSNILSNPN------------------EEKYRRIRLSNKTFQEKILPV---PGARELLEALGFRE 60 (87)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHSTT-------------------CGGGEEETTSHHHHHHTTTS---TTHHHHHHHHT-EE
T ss_pred CHHHHHHHHHHHHHHHHHHccCCC------------------cccceEeecCcchHHHHhcCC---hhHHHHHHHCCCEE
Confidence 345566677776666665533211 245689999999999888854 33788999999987
Q ss_pred EE
Q 009703 341 ER 342 (528)
Q Consensus 341 ~~ 342 (528)
..
T Consensus 61 ~~ 62 (87)
T PF09409_consen 61 VT 62 (87)
T ss_dssp --
T ss_pred ec
Confidence 64
No 120
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=2.7e+02 Score=30.37 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=96.1
Q ss_pred CcchhhhhhhhhhCCC------------CCCCCCCCCC-CCChh-----HHHHHHHHHHHHHCCCceeecccccChHHHH
Q 009703 365 HPCDVMEDVAIAYGYN------------NIPKRKPASV-KPLAL-----NEFSDLMRLEIAMNGFTEVLTWILCSSKEIS 426 (528)
Q Consensus 365 ~~~DliEEIar~yGyd------------ni~~~~p~~~-~~~~~-----~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~ 426 (528)
.+.++-|++|.+.--. +|..+.|+.. ...|. +..-+.+++.....|+.++-|-.|-=++...
T Consensus 29 ~~~~~~~~va~~~~~~~~~~~~~~~~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~ 108 (518)
T KOG1936|consen 29 SPEQISEEVALILALKNGLGRSGSIFKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILT 108 (518)
T ss_pred ChhHhhHHHHHHHHHhcccCCCCCCcCcceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHh
Confidence 3455667777777443 3444455543 22332 3456778889999999999999998776533
Q ss_pred HHhccCCCCCcce--eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcc--cCcccccEEEEEE
Q 009703 427 TMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKD--VGASCRRRLAALY 502 (528)
Q Consensus 427 ~~~~~~~~~~~~v--l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~--~~~~~~~~l~~~~ 502 (528)
.+-+- + .+.+ +.. ---|.=.||.-|.+.+-+-++.|+- ..++-|-|++||..+...- ..-|+...+-+=+
T Consensus 109 gKYGE--d-skLiYdlkD-QGGEl~SLRYDLTVPfARylAmNki--~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDI 182 (518)
T KOG1936|consen 109 GKYGE--D-SKLIYDLKD-QGGELCSLRYDLTVPFARYLAMNKI--TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDI 182 (518)
T ss_pred hhccc--c-cceeEehhh-cCCcEEEeecccccHHHHHHHHccc--ccceeeeEEEEEeccCchhhchhhhhhhccCccc
Confidence 32221 1 1223 222 2345567999999999999999943 3489999999999887522 1234444444555
Q ss_pred ecC----CCCHHHHHHHHH---hcCCe
Q 009703 503 CGA----NSGFEVIYLTVL---TKNFT 522 (528)
Q Consensus 503 ~~~----~~~f~~i~~~l~---~~~~~ 522 (528)
+|. .++.+-++.+++ .||+.
T Consensus 183 AG~~d~M~pdaE~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 183 AGQFDPMIPDAECLKIVVEILSRLGIG 209 (518)
T ss_pred cccCCCCCchHHHHHHHHHHHhhcCcc
Confidence 663 567777776655 56654
No 121
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=78 Score=32.13 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHccCCCCCccEEEeeeee
Q 009703 454 TLMPGILKTIGHNKDHPKPIKIYEVGDVV 482 (528)
Q Consensus 454 SLlpgLL~~~~~N~~~~~~~~lFEiG~V~ 482 (528)
.|+||||-+... ++.|+.|||||.-.
T Consensus 126 all~gll~va~q---~~~Pl~l~EiGsSa 151 (350)
T COG4427 126 ALLPGLLIVALQ---FGKPLVLSEIGSSA 151 (350)
T ss_pred HHHHHHHHHHHh---cCCCeEEEeccccc
Confidence 489999988763 77899999999654
No 122
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.54 E-value=30 Score=26.14 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||+|++.- .+ | .|.++..+++..+--.+.+... ...+ -+.+-++.+.++-|+.-|
T Consensus 1 MP~i~i~~---~~--G--rs~eqk~~l~~~it~~l~~~~~-----------------~p~~-~v~V~i~e~~~~~~~~gG 55 (61)
T PRK02220 1 MPYVHIKL---IE--G--RTEEQLKALVKDVTAAVSKNTG-----------------APAE-HIHVIINEMSKNHYAVGG 55 (61)
T ss_pred CCEEEEEE---cC--C--CCHHHHHHHHHHHHHHHHHHhC-----------------cChh-hEEEEEEEeChhHeEECC
Confidence 99999931 11 4 3577766666544444433221 0011 245667777788777655
No 123
>PLN02221 asparaginyl-tRNA synthetase
Probab=20.41 E-value=6.7e+02 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChH
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~ 423 (528)
..+...+|+.|...||.|+-|-.|++..
T Consensus 175 S~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 175 NALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 3567889999999999999999998754
No 124
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=20.04 E-value=89 Score=34.46 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHH-HHHHHHccCCCCCcc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGI-LKTIGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgL-L~~~~~N~~~~~~~~ 474 (528)
+..+.+|+.|-..||-||=|-.|-.-.- + . ..+..+ -.|-+..|+ +||-+ |-| |+-+- --+. -|
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~lq~i~G-----G-A-~ArPF~ThhNald~dl-yLRIA--pELyLKRli---VGG~-er 250 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPMLQPIPG-----G-A-AARPFITHHNALDMDL-YLRIA--PELYLKRLI---VGGF-ER 250 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccccccCC-----C-c-ccccceeeecccCCce-EEeec--cHHHHHHHH---hcCc-hh
Confidence 4677899999999999999988876431 1 1 113345 777777776 45533 222 12111 1222 48
Q ss_pred EEEeeeeeecC
Q 009703 475 IYEVGDVVLLD 485 (528)
Q Consensus 475 lFEiG~V~~~~ 485 (528)
+||||++|...
T Consensus 251 VfEIgr~FRNE 261 (502)
T COG1190 251 VFEIGRNFRNE 261 (502)
T ss_pred heeeccccccC
Confidence 99999999643
Done!