Query 009703
Match_columns 528
No_of_seqs 225 out of 1419
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_B Phenylalanyl-tRNA synth 100.0 3E-121 9E-126 1009.9 47.8 517 1-522 1-525 (589)
2 3pco_B Phenylalanyl-tRNA synth 100.0 2.4E-86 8.1E-91 749.4 31.7 431 60-527 154-638 (795)
3 2rhq_B Phenylalanyl-tRNA synth 100.0 4.7E-84 1.6E-88 732.8 35.3 429 60-526 156-639 (795)
4 1b7y_B Phers, protein (phenyla 100.0 5.7E-82 2E-86 712.8 35.6 419 60-527 152-628 (785)
5 2cxi_A Phenylalanyl-tRNA synth 100.0 1.4E-77 4.8E-82 620.8 27.9 341 1-379 1-348 (348)
6 2du3_A O-phosphoseryl-tRNA syn 99.9 3.7E-26 1.3E-30 245.5 10.2 171 357-527 10-266 (534)
7 3ica_A Phenylalanyl-tRNA synth 99.9 7.8E-26 2.7E-30 219.1 9.3 132 394-527 5-162 (213)
8 3ig2_A Phenylalanyl-tRNA synth 99.9 7.4E-26 2.5E-30 219.3 8.2 132 393-526 4-161 (213)
9 2rhq_A Phenylalanyl-tRNA synth 99.9 5.2E-24 1.8E-28 215.9 12.0 152 364-518 20-178 (294)
10 2du7_A O-phosphoseryl-tRNA syn 99.7 2.1E-16 7.1E-21 169.8 11.2 152 372-526 35-277 (549)
11 2odr_D Phosphoseryl-tRNA synth 99.6 1.2E-15 4.1E-20 165.2 11.7 137 391-527 63-285 (685)
12 2odr_B Phosphoseryl-tRNA synth 99.6 1.1E-15 3.7E-20 165.3 11.2 137 391-527 63-285 (648)
13 2odr_A Phosphoseryl-tRNA synth 99.6 1.1E-15 3.9E-20 165.2 11.3 137 391-527 63-285 (665)
14 2odr_C Phosphoseryl-tRNA synth 99.6 1.3E-15 4.3E-20 165.4 11.6 146 382-527 50-285 (701)
15 3l4g_A Phenylalanyl-tRNA synth 99.6 2.2E-15 7.6E-20 161.3 12.5 153 374-527 207-407 (508)
16 1b7y_A Phers, protein (phenyla 99.6 2.2E-15 7.6E-20 155.5 11.2 144 380-527 84-255 (350)
17 3pco_A Phenylalanyl-tRNA synth 99.5 2E-14 6.9E-19 146.7 7.2 140 379-527 89-245 (327)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.5 9.9E-14 3.4E-18 140.2 11.6 132 391-526 75-213 (290)
19 3dsq_A Pyrrolysyl-tRNA synthet 99.5 1.1E-13 3.7E-18 139.6 9.4 134 391-527 69-211 (288)
20 3cmq_A Phenylalanyl-tRNA synth 99.1 8.1E-11 2.8E-15 124.2 5.5 137 379-526 27-228 (415)
21 3hj7_A TRNA(Ile)-lysidine synt 97.7 4E-05 1.4E-09 68.8 6.6 83 163-255 43-126 (142)
22 1z7m_A ATP phosphoribosyltrans 96.6 0.0057 1.9E-07 62.7 9.6 129 394-525 38-177 (344)
23 3net_A Histidyl-tRNA synthetas 96.5 0.005 1.7E-07 65.7 8.6 146 377-525 5-182 (465)
24 3od1_A ATP phosphoribosyltrans 96.4 0.013 4.5E-07 61.3 10.3 128 395-525 27-163 (400)
25 1wu7_A Histidyl-tRNA synthetas 96.3 0.012 4.3E-07 61.9 9.8 128 395-525 23-160 (434)
26 1h4v_B Histidyl-tRNA synthetas 96.2 0.025 8.6E-07 59.2 11.6 131 394-525 19-161 (421)
27 3rac_A Histidine-tRNA ligase; 96.2 0.015 5.1E-07 60.3 9.7 125 395-522 40-180 (373)
28 2cxi_A Phenylalanyl-tRNA synth 95.8 0.017 6E-07 59.2 8.1 66 3-90 282-347 (348)
29 1htt_A Histidyl-tRNA synthetas 95.7 0.035 1.2E-06 58.1 10.2 129 395-525 21-162 (423)
30 4e51_A Histidine--tRNA ligase; 95.7 0.042 1.4E-06 58.6 10.9 131 395-525 49-190 (467)
31 3lc0_A Histidyl-tRNA synthetas 95.5 0.022 7.6E-07 60.5 7.8 124 395-521 46-178 (456)
32 1qe0_A Histidyl-tRNA synthetas 95.3 0.024 8.4E-07 59.2 7.1 129 395-525 19-161 (420)
33 1nyr_A Threonyl-tRNA synthetas 95.1 0.034 1.1E-06 61.7 7.7 130 394-525 273-420 (645)
34 4g84_A Histidine--tRNA ligase, 94.7 0.082 2.8E-06 55.8 9.2 123 395-522 31-163 (464)
35 2i4l_A Proline-tRNA ligase; al 94.5 0.059 2E-06 57.2 7.5 130 394-526 69-215 (458)
36 4g85_A Histidine-tRNA ligase, 94.5 0.1 3.4E-06 56.2 9.4 123 395-522 84-216 (517)
37 3l4g_B Phenylalanyl-tRNA synth 94.4 0.062 2.1E-06 58.9 7.4 70 3-92 306-375 (589)
38 2rhq_B Phenylalanyl-tRNA synth 94.1 0.092 3.2E-06 59.6 8.2 70 3-94 408-477 (795)
39 3pco_B Phenylalanyl-tRNA synth 94.0 0.091 3.1E-06 59.6 8.1 69 2-92 404-472 (795)
40 1b7y_B Phers, protein (phenyla 93.8 0.095 3.3E-06 59.3 7.6 69 3-93 403-471 (785)
41 3a2k_A TRNA(Ile)-lysidine synt 93.3 0.088 3E-06 56.0 6.0 81 164-254 375-455 (464)
42 3a32_A Probable threonyl-tRNA 93.3 0.15 5.2E-06 54.2 7.8 153 357-521 22-195 (471)
43 2j3l_A Prolyl-tRNA synthetase; 92.9 0.13 4.5E-06 56.0 6.7 130 395-526 50-195 (572)
44 1evl_A Threonyl-tRNA synthetas 92.8 0.12 4.1E-06 53.7 6.0 128 395-525 33-177 (401)
45 1nj8_A Proline-tRNA synthetase 90.9 0.65 2.2E-05 49.2 9.2 131 395-525 41-191 (459)
46 1qf6_A THRRS, threonyl-tRNA sy 90.2 0.23 8E-06 54.9 5.1 130 394-525 273-418 (642)
47 2dq3_A Seryl-tRNA synthetase; 88.9 1.3 4.3E-05 46.5 9.3 125 395-524 175-318 (425)
48 3uh0_A Threonyl-tRNA synthetas 88.5 0.8 2.7E-05 48.5 7.5 127 395-522 67-212 (460)
49 1ses_A Seryl-tRNA synthetase; 87.7 1.2 4E-05 46.7 8.1 126 395-525 169-315 (421)
50 1hc7_A Prolyl-tRNA synthetase; 87.1 0.83 2.8E-05 48.6 6.6 130 395-525 47-196 (477)
51 2dq0_A Seryl-tRNA synthetase; 86.4 1.6 5.5E-05 46.1 8.3 126 395-525 196-340 (455)
52 1usy_A ATP phosphoribosyltrans 86.0 0.76 2.6E-05 45.2 5.2 111 398-525 6-127 (275)
53 3err_A Fusion protein of micro 83.8 3.2 0.00011 44.8 9.2 128 395-526 278-425 (536)
54 1nnh_A Asparaginyl-tRNA synthe 83.5 2.7 9.2E-05 41.7 8.0 109 396-517 19-134 (294)
55 1nj1_A PROR, proline-tRNA synt 81.2 1.5 5.1E-05 46.9 5.4 128 395-525 74-223 (501)
56 1wle_A Seryl-tRNA synthetase; 80.6 10 0.00036 40.4 11.7 130 395-525 222-371 (501)
57 3vbb_A Seryl-tRNA synthetase, 78.1 5.8 0.0002 42.6 8.7 130 396-525 205-361 (522)
58 3ial_A Prolyl-tRNA synthetase; 76.7 4.1 0.00014 43.7 7.1 131 395-525 58-208 (518)
59 3lss_A Seryl-tRNA synthetase; 75.7 5.3 0.00018 42.5 7.5 129 396-526 212-360 (484)
60 1wyd_A Hypothetical aspartyl-t 70.2 11 0.00037 39.4 8.3 105 395-517 137-243 (429)
61 1x54_A Asparaginyl-tRNA synthe 67.1 13 0.00043 39.0 8.0 104 395-517 138-244 (434)
62 3qne_A Seryl-tRNA synthetase, 64.4 8.6 0.00029 40.9 6.1 128 396-526 189-337 (485)
63 4hvc_A Bifunctional glutamate/ 64.2 5.2 0.00018 42.9 4.4 90 395-485 64-161 (519)
64 1n9w_A Aspartyl-tRNA synthetas 60.9 20 0.00068 37.3 8.1 102 396-515 129-233 (422)
65 3i7f_A Aspartyl-tRNA synthetas 57.8 22 0.00074 38.4 7.8 74 397-486 249-324 (548)
66 1ni5_A Putative cell cycle pro 55.8 13 0.00045 38.7 5.7 80 164-256 348-427 (433)
67 3a74_A Lysyl-tRNA synthetase; 50.0 39 0.0013 35.8 8.3 104 397-517 179-285 (493)
68 1e1o_A Lysyl-tRNA synthetase, 49.9 37 0.0013 36.1 8.1 104 397-517 188-294 (504)
69 3bju_A Lysyl-tRNA synthetase; 49.8 46 0.0016 35.6 8.8 105 397-517 181-287 (521)
70 2xgt_A Asparaginyl-tRNA synthe 49.1 25 0.00085 36.7 6.5 26 397-422 137-162 (435)
71 4ah6_A Aspartate--tRNA ligase, 48.6 44 0.0015 36.5 8.4 105 397-517 153-259 (617)
72 3a5y_A GENX, putative lysyl-tR 47.0 39 0.0013 34.1 7.3 106 396-517 40-152 (345)
73 4ex5_A Lysine--tRNA ligase; st 46.3 58 0.002 34.9 8.9 104 397-517 209-315 (529)
74 1ati_A Glycyl-tRNA synthetase; 45.2 17 0.00058 38.7 4.5 74 449-523 183-271 (505)
75 1l0w_A Aspartyl-tRNA synthetas 41.9 83 0.0028 34.0 9.4 105 397-517 149-255 (580)
76 1eov_A ASPRS, aspartyl-tRNA sy 41.0 65 0.0022 34.1 8.2 74 397-486 183-258 (487)
77 1c0a_A Aspartyl tRNA synthetas 39.1 98 0.0033 33.5 9.4 105 397-517 143-249 (585)
78 2zt5_A Glycyl-tRNA synthetase; 37.4 17 0.00058 40.4 3.1 39 446-485 237-279 (693)
79 3mf2_A BLL0957 protein; aminoa 31.0 36 0.0012 34.4 4.0 129 396-526 68-231 (346)
80 3m4p_A Ehasnrs, asparaginyl-tR 30.1 1E+02 0.0035 32.3 7.5 27 396-422 160-186 (456)
81 3nem_A Aspartyl-tRNA synthetas 28.9 98 0.0033 32.2 7.1 105 396-516 141-247 (438)
82 1suy_C CIIABD, circadian clock 28.9 22 0.00074 22.5 1.2 18 234-251 1-18 (34)
83 1whz_A Hypothetical protein; a 27.9 85 0.0029 23.4 4.9 20 323-342 4-23 (70)
84 2cja_A Seryl-tRNA synthetase; 24.5 19 0.00066 38.5 0.7 89 396-485 235-358 (522)
85 1hym_B CMTI-V, hydrolyzed cucu 23.1 68 0.0023 19.8 2.7 21 220-241 5-25 (26)
86 3fn2_A Putative sensor histidi 20.4 1.1E+02 0.0038 25.3 4.2 25 221-245 50-74 (106)
No 1
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-121 Score=1009.88 Aligned_cols=517 Identities=51% Similarity=0.900 Sum_probs=474.2
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHH
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (528)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++++.+|+|.+++ .+.++|.+++|++|||||||||++|
T Consensus 1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G 79 (589)
T 3l4g_B 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG 79 (589)
T ss_dssp CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence 999999999999999999999999999999999999999999999999988665 5678999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCCCCcEee
Q 009703 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (528)
Q Consensus 81 iARel~~~~~~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r~r~~Vd 160 (528)
||||+|+++|..+.|.+...... .....+.|+.++++.||||+|++|+||++++++++||+|||+|||++++|+|++||
T Consensus 80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 99999999886688888765432 12456888888889999999999999999988888999999999999999999999
Q ss_pred hhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCccc
Q 009703 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240 (528)
Q Consensus 161 Ign~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIig 240 (528)
|||||+|+|++||+|++.++++++|+||+++++++..++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg 238 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence 99999999999999999998889999999988999999999999999999999999999999999999986689999999
Q ss_pred CCceeeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhc
Q 009703 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI 320 (528)
Q Consensus 241 g~~s~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~L 320 (528)
|++|+||++||||||||||+|++.+..|+++++++++++|+++++++++++++..|....+|.+.++++.++.++|+++|
T Consensus 239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll 318 (589)
T 3l4g_B 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV 318 (589)
T ss_dssp BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence 99999999999999999999999999999999999999999988889988886546677889888899999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC---CCChhHH
Q 009703 321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE 397 (528)
Q Consensus 321 G~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~ 397 (528)
|++++.++|.++|++|||.++..+++ +. |.|+||+||.||+|++||||||||+|||||||.++|... ..++.++
T Consensus 319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~ 395 (589)
T 3l4g_B 319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK 395 (589)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence 99999999999999999999764322 35 999999999999999999999999999999999998754 6788899
Q ss_pred HHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccEE
Q 009703 398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476 (528)
Q Consensus 398 ~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lF 476 (528)
+.+++|+.|+++||+|++||+|+++++++++|+...+..++| |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus 396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF 475 (589)
T 3l4g_B 396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475 (589)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999998777777553224679 9999999999999999999999999999987789999
Q ss_pred EeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCe
Q 009703 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFT 522 (528)
Q Consensus 477 EiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~ 522 (528)
|+|+||+++...+.+.++.+++|++++|+..+|+++||+++ .+|++
T Consensus 476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCC
T ss_pred EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999998765556778899999999999999999999665 57875
No 2
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=2.4e-86 Score=749.43 Aligned_cols=431 Identities=21% Similarity=0.314 Sum_probs=351.0
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCC-CCCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (528)
+|+++||++|||||||||++|||||+||+++. ...|.+....... ...+.|+.++++.||+|+|++|+||++++
T Consensus 154 ~D~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~--~~~~~v~v~~~~~cp~y~~~vi~~V~~~~--- 228 (795)
T 3pco_B 154 DDNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATI--DDTLPITVEAPEACPRYLGRVVKGINVKA--- 228 (795)
T ss_dssp CCEEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCCS--CCCCCCCCSCTTTCSEEEEEEEESCCTTC---
T ss_pred CceeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccCC--CcceEEEecCcccCceEEEEEEEcccCCC---
Confidence 68999999999999999999999999999997 4777766433211 23456666678999999999999999985
Q ss_pred CCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceee
Q 009703 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (528)
Q Consensus 139 ~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (528)
+||+|||+||+++++| +|++|||+||.|.++++| |++++..+ .+.++....+ +++..|+++++++.+
T Consensus 229 ~SP~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g-~i~vr~a~~g-----e~~~~Ld~~e~~l~~--- 299 (795)
T 3pco_B 229 PTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEG-GIVVRMAKEG-----ETLVLLDGTEAKLNA--- 299 (795)
T ss_dssp CCCTHHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCS-CCEEECCCSS-----CCEEETTTEEECCCT---
T ss_pred CCHHHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCC-CeEEEEcCCC-----CEEEecCCceeecCC---
Confidence 3799999999999998 588999999766666666 33333333 3444444322 223334445555542
Q ss_pred cccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHHH
Q 009703 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (528)
Q Consensus 215 ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~a 268 (528)
.++||+|+++ ++|+||||||++|+|+++|||||||+| |+|++.+..|
T Consensus 300 ------~~lvi~D~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERGvDp~~~~~a 372 (795)
T 3pco_B 300 ------DTLVIADHNK-ALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKA 372 (795)
T ss_dssp ------TCCEEECSSS-EEEETTTCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHCCCTTCHHHH
T ss_pred ------CcEEEEeCCc-eEEEccccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcCCCHHHHHHH
Confidence 4699999996 999999999999999999999999999 6788899999
Q ss_pred HHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCC
Q 009703 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNN 348 (528)
Q Consensus 269 l~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~ 348 (528)
+++++++++++|++ +++++...+. . .+...+++|.++.++|+++||++++.++|.++|++|||.++..+ +
T Consensus 373 l~ra~~Li~e~~gg--~v~~v~~~~~--~---~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~---~ 442 (795)
T 3pco_B 373 MERATRLLIDICGG--EAGPVIDITN--E---ATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGK---D 442 (795)
T ss_dssp HHHHHHHHHTTSSC--EEEEEEEEEC--T---TTSCCCCEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEET---T
T ss_pred HHHHHHHHHHHhCC--eEEEEEEeCC--c---cCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC---c
Confidence 99999999999975 4454433321 0 01235678999999999999999999999999999999997643 2
Q ss_pred cceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC----CCChhHHHHHHHHHHHHHCCCceeecccccChHH
Q 009703 349 QWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (528)
Q Consensus 349 ~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~ 424 (528)
. |.|+||+||.||+|++||||||||+|||||||+++|... ...+.+++.+++|+.|+++||+|++||+|+|++.
T Consensus 443 ~--~~V~vPs~R~DI~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~~ 520 (795)
T 3pco_B 443 E--WQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKV 520 (795)
T ss_dssp E--EEEECCSSCSSCSSHHHHHHHHHHHHCGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHHH
T ss_pred e--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHHH
Confidence 5 999999999999999999999999999999999998642 3344455799999999999999999999999996
Q ss_pred HHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC-ccEEEeeeeeecCCCcccCcccccEEEEEE
Q 009703 425 ISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (528)
Q Consensus 425 ~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~-~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~ 502 (528)
+. .++. ..++| |+||+|+|+++||+|||||||+++++|++|+++ +++||+|+||.++.+.+.++.|.++||+++
T Consensus 521 ~~-~~~~---~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~ 596 (795)
T 3pco_B 521 QQ-MIHP---GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVI 596 (795)
T ss_dssp HH-HHSS---SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEE
T ss_pred HH-hhCC---CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEE
Confidence 43 3432 24689 999999999999999999999999999999875 999999999998765455778999999999
Q ss_pred ecC-----------CCCHHHHHHHHH----hcCC--eeeeec
Q 009703 503 CGA-----------NSGFEVIYLTVL----TKNF--TCELNN 527 (528)
Q Consensus 503 ~~~-----------~~~f~~i~~~l~----~~~~--~~~~~~ 527 (528)
+|. ..+|+++||+++ .+|+ +++|++
T Consensus 597 ~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~~~~~~~ 638 (795)
T 3pco_B 597 CGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRA 638 (795)
T ss_dssp ESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCSSCCEEC
T ss_pred ECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 994 368999999988 4554 566554
No 3
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=4.7e-84 Score=732.83 Aligned_cols=429 Identities=18% Similarity=0.295 Sum_probs=347.5
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (528)
+|.++||++|||||||||++|||||||+++|.. ..|.+.+..........+.|+.++++.||+|+|++|+||++.
T Consensus 156 ~D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~~---- 231 (795)
T 2rhq_B 156 NDQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE---- 231 (795)
T ss_dssp SCEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCC----
T ss_pred CceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCCC----
Confidence 689999999999999999999999999999984 677765421100112236666667889999999999999996
Q ss_pred CCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceee
Q 009703 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (528)
Q Consensus 139 ~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (528)
+||+|||+||+++++| +|++|||+||.|.++++| |++++.++..+.++....+ +++..|+++++++.+
T Consensus 232 ~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~g-----e~~~~L~~~~~~l~~--- 303 (795)
T 2rhq_B 232 PSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDE-----ETMTTLDNNERKLVD--- 303 (795)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTT-----CEEEBTTSCEEECCT---
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCC-----CEEEecCCceeecCC---
Confidence 4899999999999988 599999998555555555 2233332113333333221 223333345555542
Q ss_pred cccCCCcceEEEeCCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHhHHHH
Q 009703 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (528)
Q Consensus 215 ii~~~~~~pVI~D~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~~~~a 268 (528)
..+||+|++| ++|+||||||++|+|+++|||||||+| |+|++.+..|
T Consensus 304 ------~~lvi~D~~~-~~~~agi~gg~~s~v~~~T~~i~le~a~f~p~~Ir~tar~~~l~tdas~RfERGvD~~~~~~a 376 (795)
T 2rhq_B 304 ------TDIVISNGQE-PIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEA 376 (795)
T ss_dssp ------TCEEEESSSS-EEEETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHTCCCGGGHHHH
T ss_pred ------CcEEEEECCC-ceEecceeCCCceeeeCCCCEEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHHHHHH
Confidence 4699999997 999999999999999999999999999 8889999999
Q ss_pred HHHHHHHHHHHhcCCcceecEEEEeeCCceeeec-CCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCC
Q 009703 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYP-DLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGN 347 (528)
Q Consensus 269 l~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p-~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~ 347 (528)
++++++++.++|++... . +..+.+| ...+++|.++.++|+++||++++.++|.++|++|||.++..+
T Consensus 377 l~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~~~--- 444 (795)
T 2rhq_B 377 VDRACYLLQELASGEVL-Q--------DRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKG--- 444 (795)
T ss_dssp HHHHHHHHHHHSCCEEC-B--------CCEEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEET---
T ss_pred HHHHHHHHHHHcCCccc-c--------ceEEccCCCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC---
Confidence 99999999999976321 2 2333455 356679999999999999999999999999999999996532
Q ss_pred CcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCC-CC----CCChhHHHHHHHHHHHHHCCCceeecccccCh
Q 009703 348 NQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA-SV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSS 422 (528)
Q Consensus 348 ~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~-~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~ 422 (528)
+. |.|+||+||.||+|++||||||||+|||||||.++|. .. ..++.+++.+++|+.|+++||+|++||+|+++
T Consensus 445 ~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~ 522 (795)
T 2rhq_B 445 ET--LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSK 522 (795)
T ss_dssp TE--EEEEEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECT
T ss_pred ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCH
Confidence 35 9999999999999999999999999999999999996 32 67888999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCc-ce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCCcccCcccccEEE
Q 009703 423 KEISTMLNRQTDEST-AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLA 499 (528)
Q Consensus 423 ~~~~~~~~~~~~~~~-~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~~~~~~l~ 499 (528)
+.+ ++++. . .+ .+ |+||+|+|+++|||||+||||+++++|++|+. |+|+||+|+||.++...+.. .+.++++
T Consensus 523 ~~~-~~l~~-~--~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la 597 (795)
T 2rhq_B 523 DHA-KDFAL-Q--ERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLS 597 (795)
T ss_dssp TTT-TTTCS-S--CCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEE
T ss_pred HHH-HhhCC-C--CCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEE
Confidence 865 55542 2 45 69 99999999999999999999999999999975 59999999999875421122 6888999
Q ss_pred EEEecCC-----------CCHHHHHHHHHh----cCCeeeee
Q 009703 500 ALYCGAN-----------SGFEVIYLTVLT----KNFTCELN 526 (528)
Q Consensus 500 ~~~~~~~-----------~~f~~i~~~l~~----~~~~~~~~ 526 (528)
++++|.. .+|+++||+++. +|+++.|+
T Consensus 598 ~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~~ 639 (795)
T 2rhq_B 598 GILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYK 639 (795)
T ss_dssp EEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred EEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 9999975 799999999883 48766554
No 4
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=5.7e-82 Score=712.85 Aligned_cols=419 Identities=21% Similarity=0.246 Sum_probs=341.0
Q ss_pred CceEEEEecCCCccccccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCC
Q 009703 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (528)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (528)
+|+++||++|||||||||++|||||+||+ |.. ..|......... ...+.|+.++++.||+|+|++|+||++.
T Consensus 152 ~D~viei~iTpNR~D~ls~~GiARE~aa~-~~~~~~p~~~~~~~~~--~~~~~v~i~~~~~cp~y~~~~i~~v~~~---- 224 (785)
T 1b7y_B 152 EEVVLDLEVTPNRPDALGLLGLARDLHAL-GYALVEPEAALKAEAL--PLPFALKVEDPEGAPHFTLGYAFGLRVA---- 224 (785)
T ss_dssp CCEEEECCCCTTCGGGGSHHHHHHHHHHT-TCCCCCCCCCCCEECC--CCSSEEEESCTTTCSEEEEEEEESCCCC----
T ss_pred CceEEEecCCCChHHHhHHHHHHHHHHhc-CCCCCCCCcccccccc--CCceEEEecCcccCceEEEEEEECCCCC----
Confidence 79999999999999999999999999999 763 555542210011 1235666667889999999999999996
Q ss_pred CCHHHHHHHHHhcCCC-CCcEeehhhhhhhccCCC---eEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceee
Q 009703 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (528)
Q Consensus 139 ~s~~~lQekL~~~~~r-~r~~VdIgn~Dldki~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (528)
+||+|||+||+++++| +|++|||+||.|.++++| |+++++++ .+.++....+ +++..|+++++++.+
T Consensus 225 ~Sp~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g-~i~vr~a~~g-----e~~~~Ld~~~~~l~~--- 295 (785)
T 1b7y_B 225 PSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGE-GIAVRRAREG-----ERLKTLDGVERTLHP--- 295 (785)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBT-EEEEEECCTT-----CEEEBTTSCEEECCT---
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCC-CeEEEEcCCC-----CEEEeCCCceeecCC---
Confidence 4899999999999988 589999999655555555 22223222 2333333221 122333334555542
Q ss_pred cccCCCcceEEEe----CCCCeeecCCcccCCceeeecCCceEEEEec--------------------------ccChHh
Q 009703 215 IIENSPLYPVLYD----QNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTK 264 (528)
Q Consensus 215 ii~~~~~~pVI~D----~~g~vlslagIigg~~s~It~~T~nI~iE~a--------------------------g~D~~~ 264 (528)
..+||+| +++ ++|+||||||++|+|+++|||||||+| |+|++.
T Consensus 296 ------~~lvi~D~~~~~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~F~p~~Ir~tar~~~l~tdas~RfERGvD~~~ 368 (785)
T 1b7y_B 296 ------EDLVIAGWRGEESF-PLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLG 368 (785)
T ss_dssp ------TCEEEEEEETTEEE-EEEETTTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHHCCCTTC
T ss_pred ------CcEEEEeccCCCCC-eEEecceeCCCceEeecCCceEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHH
Confidence 4699999 675 999999999999999999999999999 889999
Q ss_pred HHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeHHHHHhhcCCCCCHHHHHHHHHhcCCeEEEcC
Q 009703 265 AKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSA 344 (528)
Q Consensus 265 ~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~ 344 (528)
+..|++++++++.++|++... . +..+.+|...+++|.++.++|+++||++++.++|.++|++|||.++..
T Consensus 369 ~~~al~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~~- 438 (785)
T 1b7y_B 369 QVPAQRRALSLLQALAGARVA-E--------ALLEAGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGE- 438 (785)
T ss_dssp HHHHHHHHHHHHHHHSCCEEE-S--------CCEEECCCCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESS-
T ss_pred HHHHHHHHHHHHHHHcCCccc-c--------ceEEeccCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeC-
Confidence 999999999999999976321 2 334455555667999999999999999999999999999999999642
Q ss_pred CCCCcceEEEecCCCccccCCcchhhhhhhhhhCCCCCCCCCCCC---C---CCChhHHHHHHHHHHHHHCCCceeeccc
Q 009703 345 SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---V---KPLALNEFSDLMRLEIAMNGFTEVLTWI 418 (528)
Q Consensus 345 ~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~---~---~~~~~~~~~~~lR~~l~~~Gf~Ev~t~s 418 (528)
+ +. |.|+||+||.||+|++||||||||+|||||||.++|.. . ..++.+++.+++|+.|+++||+|++||+
T Consensus 439 ~--~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitys 514 (785)
T 1b7y_B 439 G--PT--YRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYS 514 (785)
T ss_dssp S--SS--EEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCGGGSSTTHHHHHHHHHHHHHHHHTCEECCCCS
T ss_pred C--ce--EEEECCCcccccCCccHHHHHHHHHhCcccCCccCCCcccccccccCCHHHHHHHHHHHHHHHCCCEEEecCc
Confidence 2 35 99999999999999999999999999999999999965 2 5567888999999999999999999999
Q ss_pred ccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCC-C-CccEEEeeeeeecCCCcccCcccc
Q 009703 419 LCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-K-PIKIYEVGDVVLLDEKKDVGASCR 495 (528)
Q Consensus 419 L~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~-~-~~~lFEiG~V~~~~~~~~~~~~~~ 495 (528)
|++++.+ +++.. + .+.+ |+||+|+|+++|||||+||||+++++|++|+ . ++++||+|+||. + .|.
T Consensus 515 fvs~~~~-~~l~~-~--~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~ 582 (785)
T 1b7y_B 515 FMDPEDA-RRFRL-D--PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REE 582 (785)
T ss_dssp EECTTHH-HHTTC-C--CCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEE
T ss_pred ccCHHHH-HhcCC-C--CCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------Chh
Confidence 9999875 55532 1 4579 9999999999999999999999999999988 5 599999999997 1 578
Q ss_pred cEEEEEEecCC----------CCHHHHHHHHH----hcCCeeeeec
Q 009703 496 RRLAALYCGAN----------SGFEVIYLTVL----TKNFTCELNN 527 (528)
Q Consensus 496 ~~l~~~~~~~~----------~~f~~i~~~l~----~~~~~~~~~~ 527 (528)
++++++++|.. .+|+++||+++ .+|+++.|++
T Consensus 583 ~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~~~ 628 (785)
T 1b7y_B 583 THLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRVEA 628 (785)
T ss_dssp EEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEEEC
T ss_pred hEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCceEEee
Confidence 99999999986 79999999987 4577666653
No 5
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-77 Score=620.80 Aligned_cols=341 Identities=37% Similarity=0.589 Sum_probs=305.6
Q ss_pred CCeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecC-----CCcccc
Q 009703 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVP-----ANRYDL 75 (528)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit-----~NR~Dl 75 (528)
||||+|++++|++++|+++|++||++.|+++|.|+++..+ .+++|++| ||||||
T Consensus 1 Mp~i~v~~~~L~~~lg~~~~~~el~~~~~~~G~~~~~~~d---------------------~iiei~it~~~~~pNR~D~ 59 (348)
T 2cxi_A 1 MPKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWE---------------------ENGKVYFKLDSKDTNRPDL 59 (348)
T ss_dssp -CEEEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEE---------------------ETTEEEEEEEECCTTCGGG
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHhhhhhccCCHHHcCc---------------------eEEEEEccCCCCCCChHHH
Confidence 9999999999999999999999999999999999997653 37999999 999999
Q ss_pred ccHHHHHHHHHHHcCCC-CCCcccccCCCCCCcceEEEeccCCCCCCeEEEEEEEccccCCCCCCCHHHHHHHHHhcCCC
Q 009703 76 LCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR 154 (528)
Q Consensus 76 ls~~GiARel~~~~~~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lQekL~~~~~r 154 (528)
||++||||+|++++|.. +.|.+.+.. ....+.|+....+.||||+|++++||+++++.|+||+|||+|||+++||
T Consensus 60 lS~~GiARelaa~~~~~~~~p~~~~~~----~~~~v~v~~~~~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~ 135 (348)
T 2cxi_A 60 WSAEGVARQIKWALGIEKGLPKYEVKK----SNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGR 135 (348)
T ss_dssp SSHHHHHHHHHHHTTSSCSSCCCCEEE----EEEEEEECGGGTTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHhCCCCCCCCccccc----cceEEEECCCccccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999974 677775422 1345666654458999999999999999877778999999999999888
Q ss_pred CCcEeehhhhhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeee
Q 009703 155 RRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLS 234 (528)
Q Consensus 155 ~r~~VdIgn~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vls 234 (528)
+|+.|.||.||+|++.+||.|++.++++ +|+||++.++++.+++++ .+.++++|+|++++++.+|||+|++|+++|
T Consensus 136 ~r~~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~~e~~~---~~~~~~ky~~~~~~~~~~~vI~D~~~~vls 211 (348)
T 2cxi_A 136 RRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILE---KHEKGREYGHLIKDKQFYPLLIDSEGNVLS 211 (348)
T ss_dssp TTTSEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEHHHHHH---HSHHHHHHGGGTTTSSSEEEEEETTSCEEE
T ss_pred cccCCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCHHHhhh---hhccccccchhhccCCceEEEEECCCCEEE
Confidence 8888999999999999999999999877 999999977899999998 567888999999999999999999987999
Q ss_pred cCCcccCCce-eeecCCceEEEEecccChHhHHHHHHHHHHHHHHHhcCCcceecEEEEeeCCceeeecCCcceeEEeeH
Q 009703 235 LPPIINGAHS-AITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSL 313 (528)
Q Consensus 235 lagIigg~~s-~It~~T~nI~iE~ag~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~~~~ 313 (528)
+||||||++| +||++|||||||+||+|++.+..|+++++++|+++| ++++++.++++.+ ...+|.+.++++.++.
T Consensus 212 l~gi~~g~~sg~Vt~~T~~iliE~ag~d~~~~~~al~~~~~ll~e~g---g~v~~v~~~~~~~-~~~~~~~~~~~i~~~~ 287 (348)
T 2cxi_A 212 MPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERG---GKIRSVRVVYKDF-EIETPDLTPKEFEVEL 287 (348)
T ss_dssp ETTTEEBSSSSCCCTTCCSEEEEEEESCHHHHHHHHHHHHHHHHTTT---CEEEEEEEECSSC-EEEECCCCCEEEEEEH
T ss_pred ecCeecCCCcCcccCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHhC---CCccceEEEecCc-ccccCCCCCeEEEecH
Confidence 9999999999 999999999999999999999999999999999994 3567777776522 3446767788999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEecCCCccccCCcchhhhhhhhhhCC
Q 009703 314 SYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (528)
Q Consensus 314 ~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (528)
++|+++||++++.++++++|++|||.++..+ +. |.|+||+||.||+|++||||||||+|||
T Consensus 288 ~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~~---~~--~~V~vP~~R~DI~~~~DliEEVaR~yGy 348 (348)
T 2cxi_A 288 DYIRKLSGLELNDGEIKELLEKMMYEVEISR---GR--AKLKYPAFRDDIMHARDILEDVLIAYGY 348 (348)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHTTCEEEEET---TE--EEEEECTTCCCCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCeEEeCC---Ce--EEEECCCCcccCCcccHHHHHhHHhcCC
Confidence 9999999999999999999999999997532 35 9999999999999999999999999999
No 6
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.93 E-value=3.7e-26 Score=245.46 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=139.5
Q ss_pred CCCccccCCcchhhhhhhhhhCCCCCCCCCCCCC-CCChhHHHHHHHHHHHHHCCCceeecccccChHH---HH------
Q 009703 357 PPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE---IS------ 426 (528)
Q Consensus 357 P~~R~DI~~~~DliEEIar~yGydni~~~~p~~~-~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~---~~------ 426 (528)
+..|.||.+++|++|||||.||||+++++++... ..++.+++.+++|+.|+++||+|++||+|+++.. ++
T Consensus 10 ~~tR~Di~~~~DliEEvaR~yGyd~i~~~~~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpar~ 89 (534)
T 2du3_A 10 ELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALA 89 (534)
T ss_dssp HHHHHCHHHHHHHGGGGSCCCCGGGSTTSSCCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHH
T ss_pred cCChhhcchhhHHHhhhhhccCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccchhh
Confidence 4579999999999999999999999998874333 7889999999999999999999999999999976 32
Q ss_pred --H-HhccCC--------------------------------------------C------------CCcce-eeCCccc
Q 009703 427 --T-MLNRQT--------------------------------------------D------------ESTAV-VGNPRTS 446 (528)
Q Consensus 427 --~-~~~~~~--------------------------------------------~------------~~~~v-l~NP~s~ 446 (528)
+ .+.... + ....+ ++||+|+
T Consensus 90 ~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~ 169 (534)
T 2du3_A 90 VLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFP 169 (534)
T ss_dssp HHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCT
T ss_pred hccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCCCh
Confidence 1 110000 0 01128 9999999
Q ss_pred c---------hhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHH
Q 009703 447 D---------FEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLT 515 (528)
Q Consensus 447 e---------~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~ 515 (528)
| +++|||||+||||.++++|++++. |+++||+|+||..+.. ...+..+.++++++++|...+|+++||+
T Consensus 170 e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgi 249 (534)
T 2du3_A 170 EFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAV 249 (534)
T ss_dssp TTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHH
T ss_pred hhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHH
Confidence 9 799999999999999999998864 6999999999987543 2334578899999999999999999999
Q ss_pred HH----hcCCe-eeeec
Q 009703 516 VL----TKNFT-CELNN 527 (528)
Q Consensus 516 l~----~~~~~-~~~~~ 527 (528)
++ .+|+. +.|++
T Consensus 250 lE~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 250 AEALLRQFGFENFRFRK 266 (534)
T ss_dssp HHHHHGGGTCCEEEEEE
T ss_pred HHHHHHHcCCCeEEEEE
Confidence 87 45774 66653
No 7
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=99.92 E-value=7.8e-26 Score=219.14 Aligned_cols=132 Identities=20% Similarity=0.281 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
..+++.+++|+.|+++||+|++||+|++++. ++.++... ...+| |+||+|+|+++||+||+||||+++++|++|+.+
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~-~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~ 82 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSHP-REMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GTTCSSSC-GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHH-HhhhcccC-cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 4568999999999999999999999999884 55554322 24679 999999999999999999999999999999987
Q ss_pred -ccEEEeeeeeecCCCc------ccCcccccEEEEEEecC-----------CCCHHHHHHHHH----hcCCe---eeeec
Q 009703 473 -IKIYEVGDVVLLDEKK------DVGASCRRRLAALYCGA-----------NSGFEVIYLTVL----TKNFT---CELNN 527 (528)
Q Consensus 473 -~~lFEiG~V~~~~~~~------~~~~~~~~~l~~~~~~~-----------~~~f~~i~~~l~----~~~~~---~~~~~ 527 (528)
+++||+|+||.++... ..+..+.++||++++|. ..+|+++||+++ .+|++ +.+++
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~~ 162 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKT 162 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEee
Confidence 9999999999876421 02346888999999994 479999999876 67876 66654
No 8
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=99.92 E-value=7.4e-26 Score=219.30 Aligned_cols=132 Identities=23% Similarity=0.277 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCC
Q 009703 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (528)
Q Consensus 393 ~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (528)
+..+++.+++|+.|+++||+|++||+|++++. ++.++... ..++| |+||+|+|+++||+||+||||+++++|++|+.
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~~-~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~ 81 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESYP-SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKN 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGGG-GTTCSSSC-GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHHH-HHhhcccC-cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 44678999999999999999999999999984 56555332 24679 99999999999999999999999999999987
Q ss_pred C-ccEEEeeeeeecCCCc------ccCcccccEEEEEEecC-----------CCCHHHHHHHHH----hcCCe---eeee
Q 009703 472 P-IKIYEVGDVVLLDEKK------DVGASCRRRLAALYCGA-----------NSGFEVIYLTVL----TKNFT---CELN 526 (528)
Q Consensus 472 ~-~~lFEiG~V~~~~~~~------~~~~~~~~~l~~~~~~~-----------~~~f~~i~~~l~----~~~~~---~~~~ 526 (528)
+ +++||+|+||.++... ..+..|.++||++++|. ..+|+++||+|+ .+|++ +.++
T Consensus 82 ~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~ 161 (213)
T 3ig2_A 82 ADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVG 161 (213)
T ss_dssp -CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEE
T ss_pred CCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 6 9999999999976521 12357889999999993 468999999876 67776 5554
No 9
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.90 E-value=5.2e-24 Score=215.95 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=116.0
Q ss_pred CCcchhhhhhhhhhCCCCCCCCCCCCC----CCChhHHHHHHHHHHHHHCCCceeecccccChHH-HHHHhccCCCCCcc
Q 009703 364 LHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE-ISTMLNRQTDESTA 438 (528)
Q Consensus 364 ~~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~-~~~~~~~~~~~~~~ 438 (528)
..++||||||||+|||||||.++|... ..++.+++.+.+|+.|+++||+|+ +|+|++++. +++.++...+ ..+
T Consensus 20 ~~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~-~pa 97 (294)
T 2rhq_A 20 HMGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKS-HPA 97 (294)
T ss_dssp -----CTTHHHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTT-CGG
T ss_pred CCcchHHHHHHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCC-ccc
Confidence 357899999999999999999998542 678899999999999999999999 999998753 3455543321 111
Q ss_pred e-eeCCccc-chhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHH
Q 009703 439 V-VGNPRTS-DFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTV 516 (528)
Q Consensus 439 v-l~NP~s~-e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l 516 (528)
. +.+++.- |+++|||||+|+|++++++|+ +..++++||+|+||..++...+...+..+|+++++|+..+|+++|++|
T Consensus 98 r~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~-~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~l 176 (294)
T 2rhq_A 98 RDMQDSFYITDEILMRTHTSPVQARTMEKRN-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTL 176 (294)
T ss_dssp GCTTTSCBSSSSEEECSSSHHHHHHHHHHTT-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHH
T ss_pred cccCCcEEEcCcceeeccCHHHHHHHHHhcC-CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHH
Confidence 1 2222221 899999999999999999998 445699999999998654212233578899999999999999999998
Q ss_pred Hh
Q 009703 517 LT 518 (528)
Q Consensus 517 ~~ 518 (528)
+.
T Consensus 177 e~ 178 (294)
T 2rhq_A 177 EL 178 (294)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 10
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=2.1e-16 Score=169.80 Aligned_cols=152 Identities=12% Similarity=0.181 Sum_probs=119.0
Q ss_pred hhhhhhCCCCCCCCCCCC---C-CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCc-ce-eeCCc
Q 009703 372 DVAIAYGYNNIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPR 444 (528)
Q Consensus 372 EIar~yGydni~~~~p~~---~-~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~-~v-l~NP~ 444 (528)
++++.|++| .++|.. . +.+|.+++.+.+|++++++||+|++++.+++..+++..++.+. +..+ .+ |.||.
T Consensus 35 ~~~~~~~~d---~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~ 111 (549)
T 2du7_A 35 ALIKDKHID---NKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLP 111 (549)
T ss_dssp CSSCCCTTT---TSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCC
T ss_pred hhhhccCcC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCC
Confidence 467788887 344432 2 8899999999999999999999999999999988765543221 0022 67 99984
Q ss_pred c--------------------------------------------------------------------c---------c
Q 009703 445 T--------------------------------------------------------------------S---------D 447 (528)
Q Consensus 445 s--------------------------------------------------------------------~---------e 447 (528)
. . +
T Consensus 112 ~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e 191 (549)
T 2du7_A 112 RPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPEST 191 (549)
T ss_dssp CCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEE
T ss_pred CcccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhcccccccc
Confidence 2 1 5
Q ss_pred hhHHHhhhHHHHHHHHHHccCCCC-CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH----hcCC
Q 009703 448 FEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNF 521 (528)
Q Consensus 448 ~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~ 521 (528)
+++|||||+||||.++++|++++. |+++||+|+||..+.. ..++..+.++++++++|...+|+++||+|+ .+|+
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LGi 271 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGF 271 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTC
T ss_pred ccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 889999999999999999988764 6999999999987542 223557889999999999999999999988 4576
Q ss_pred -eeeee
Q 009703 522 -TCELN 526 (528)
Q Consensus 522 -~~~~~ 526 (528)
++.|+
T Consensus 272 ~~~rfr 277 (549)
T 2du7_A 272 TKFKFK 277 (549)
T ss_dssp CCCCCE
T ss_pred CeEEEE
Confidence 35444
No 11
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.61 E-value=1.2e-15 Score=165.19 Aligned_cols=137 Identities=11% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCc-ce-eeCCcc----------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT---------------------- 445 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~-~v-l~NP~s---------------------- 445 (528)
+.+|.+++.+.+|++++++||+|++++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 63 ~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~ 142 (685)
T 2odr_D 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSE 142 (685)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC----------------------
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccch
Confidence 7899999999999999999999999999999888765543221 0012 67 999851
Q ss_pred ---------------------------------------------c---------chhHHHhhhHHHHHHHHHHccCCCC
Q 009703 446 ---------------------------------------------S---------DFEVVRTTLMPGILKTIGHNKDHPK 471 (528)
Q Consensus 446 ---------------------------------------------~---------e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (528)
. ++++|||||+||||.++++|++++.
T Consensus 143 ~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~ 222 (685)
T 2odr_D 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKP 222 (685)
T ss_dssp -----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCC
Confidence 1 4789999999999999999988764
Q ss_pred -CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 472 -PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 472 -~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
|+|+||+|+||..+.. ..++..+.++++++++|...+|+++||+|+ .+|+ ++.|++
T Consensus 223 ~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~vrfrp 285 (685)
T 2odr_D 223 LPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIP 285 (685)
T ss_dssp SCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6999999999986542 223457899999999999999999999988 4576 465543
No 12
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.61 E-value=1.1e-15 Score=165.26 Aligned_cols=137 Identities=11% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCc-ce-eeCCcc----------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT---------------------- 445 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~-~v-l~NP~s---------------------- 445 (528)
+.+|.+++.+.+|++++++||+|++++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 63 ~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~ 142 (648)
T 2odr_B 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSE 142 (648)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC----------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccch
Confidence 7899999999999999999999999999999888765543221 0012 67 999851
Q ss_pred ---------------------------------------------c---------chhHHHhhhHHHHHHHHHHccCCCC
Q 009703 446 ---------------------------------------------S---------DFEVVRTTLMPGILKTIGHNKDHPK 471 (528)
Q Consensus 446 ---------------------------------------------~---------e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (528)
. ++++|||||+||||.++++|++++.
T Consensus 143 ~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~ 222 (648)
T 2odr_B 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKP 222 (648)
T ss_dssp -----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCC
Confidence 1 4789999999999999999988764
Q ss_pred -CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 472 -PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 472 -~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
|+++||+|+||..+.. ..++..+.++++++++|+..+|+++||+|+ .+|+ ++.|++
T Consensus 223 ~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~vrfrp 285 (648)
T 2odr_B 223 LPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIP 285 (648)
T ss_dssp SCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6999999999986542 223457899999999999999999999988 4576 465543
No 13
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.61 E-value=1.1e-15 Score=165.20 Aligned_cols=137 Identities=11% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCc-ce-eeCCcc----------------------
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT---------------------- 445 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~-~v-l~NP~s---------------------- 445 (528)
+.+|.+++.+.+|++++++||+|++++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 63 ~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~ 142 (665)
T 2odr_A 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSE 142 (665)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC----------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccch
Confidence 7899999999999999999999999999999888765543221 0012 67 999851
Q ss_pred ---------------------------------------------c---------chhHHHhhhHHHHHHHHHHccCCCC
Q 009703 446 ---------------------------------------------S---------DFEVVRTTLMPGILKTIGHNKDHPK 471 (528)
Q Consensus 446 ---------------------------------------------~---------e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (528)
. ++++|||||+||||.++++|++++.
T Consensus 143 ~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~ 222 (665)
T 2odr_A 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKP 222 (665)
T ss_dssp -----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCC
Confidence 1 4789999999999999999988764
Q ss_pred -CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 472 -PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 472 -~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
|+++||+|+||..+.. ..++..+.++++++++|+..+|+++||+|+ .+|+ ++.|++
T Consensus 223 ~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~vrfrp 285 (665)
T 2odr_A 223 LPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIP 285 (665)
T ss_dssp SCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6999999999986542 223457899999999999999999999988 4576 465543
No 14
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.61 E-value=1.3e-15 Score=165.42 Aligned_cols=146 Identities=12% Similarity=0.162 Sum_probs=113.8
Q ss_pred CCCCCCCC---C-CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCc-ce-eeCCcc---------
Q 009703 382 IPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT--------- 445 (528)
Q Consensus 382 i~~~~p~~---~-~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~-~v-l~NP~s--------- 445 (528)
|..++|.. . +.+|.+++.+.+|++++++||+|++++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 50 id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~ 129 (701)
T 2odr_C 50 INESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129 (701)
T ss_dssp TTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC---------
T ss_pred cCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhh
Confidence 44555543 2 7899999999999999999999999999999888765543221 0012 67 999851
Q ss_pred ----------------------------------------------------------c---------chhHHHhhhHHH
Q 009703 446 ----------------------------------------------------------S---------DFEVVRTTLMPG 458 (528)
Q Consensus 446 ----------------------------------------------------------~---------e~~~lR~SLlpg 458 (528)
. ++++|||||+||
T Consensus 130 ~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPG 209 (701)
T 2odr_C 130 ISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSG 209 (701)
T ss_dssp ------------------------------------------------------------CCCCCCEEEEEEECCCTHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhh
Confidence 1 378999999999
Q ss_pred HHHHHHHccCCCC-CccEEEeeeeeecCCC-cccCcccccEEEEEEecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 459 ILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 459 LL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
||.++++|++++. |+|+||+|+||..+.. ..++..+.++++++++|+..+|+++||+|+ .+|+ ++.|++
T Consensus 210 LL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~vrfrp 285 (701)
T 2odr_C 210 WFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIP 285 (701)
T ss_dssp HHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999999988764 6999999999986542 223457899999999999999999999988 4576 465643
No 15
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=161.32 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=120.3
Q ss_pred hhhhCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHCCCceeeccccc-ChHHHHHHhccCCC--C---Ccce-eeCCccc
Q 009703 374 AIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC-SSKEISTMLNRQTD--E---STAV-VGNPRTS 446 (528)
Q Consensus 374 ar~yGydni~~~~p~~~~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~-s~~~~~~~~~~~~~--~---~~~v-l~NP~s~ 446 (528)
.|.|+|+...+..+.. ..+|.+++.+.+|++|.++||+|++|..++ +...+|+.|+.+.+ . .+.+ |.||++.
T Consensus 207 f~~y~~~~~g~~~~~G-~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~ 285 (508)
T 3l4g_A 207 FKPYNFLAHGVLPDSG-HLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEA 285 (508)
T ss_dssp CCCCCSSSCCCCCCCC-BCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBC
T ss_pred ceecccCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCcccc
Confidence 4789998876544322 689999999999999999999999974444 44457888877532 1 2358 9999865
Q ss_pred ----------------------------------chhHHHhhhHHHHHHHHHHccC-CC-CCccEEEeeeeeecCCCccc
Q 009703 447 ----------------------------------DFEVVRTTLMPGILKTIGHNKD-HP-KPIKIYEVGDVVLLDEKKDV 490 (528)
Q Consensus 447 ----------------------------------e~~~lR~SLlpgLL~~~~~N~~-~~-~~~~lFEiG~V~~~~~~~~~ 490 (528)
+..+|||+++|++++++++|.+ ++ .|+|+||+|+||..+....+
T Consensus 286 ~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Dat 365 (508)
T 3l4g_A 286 LQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT 365 (508)
T ss_dssp SCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSS
T ss_pred ccccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCC
Confidence 5789999999999999999987 44 57999999999988754334
Q ss_pred CcccccEEEEEEecCCCCHHHHHHHHH----hcCC-eeeeec
Q 009703 491 GASCRRRLAALYCGANSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
...+.+++++++++...+|+++||+|+ .+|+ ++.|++
T Consensus 366 HlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~lG~~~~rfrp 407 (508)
T 3l4g_A 366 HLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKP 407 (508)
T ss_dssp SCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred cCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHcCCcceEeec
Confidence 455678899999999999999999887 5676 355554
No 16
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.60 E-value=2.2e-15 Score=155.47 Aligned_cols=144 Identities=11% Similarity=0.067 Sum_probs=112.1
Q ss_pred CCCCCCCCCCC----CCChhHHHHHHHHHHHHHCCCceeecccccChH-HHHHHhccCCC-----CCcce-eeCCcc---
Q 009703 380 NNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSK-EISTMLNRQTD-----ESTAV-VGNPRT--- 445 (528)
Q Consensus 380 dni~~~~p~~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~-~~~~~~~~~~~-----~~~~v-l~NP~s--- 445 (528)
++|+.++|... ..+|.+++.+.+|++|+++||+|+. ++++..+ .+|+.++.+.+ ..+.+ |.||+|
T Consensus 84 ~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~ 162 (350)
T 1b7y_A 84 ERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLE 162 (350)
T ss_dssp --CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCB
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCcccccc
Confidence 57888877432 6789999999999999999999999 7777654 35666654321 13468 999999
Q ss_pred -------cchhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH-
Q 009703 446 -------SDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL- 517 (528)
Q Consensus 446 -------~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~- 517 (528)
+++.+||++++|+++++++++ ..|+|+||+|+||..+....+...+..+++++++|...+|+++||+|+
T Consensus 163 ~~~~~~~~~~~vLRt~tsp~llr~l~~~---~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ 239 (350)
T 1b7y_A 163 GPLGEEVEGRLLLRTHTSPMQVRYMVAH---TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYE 239 (350)
T ss_dssp CTTSCBCCSCEEECSSSTHHHHHHHHHC---CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHH
T ss_pred ccccccccccceeeccchHHHHHHHHhc---CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHH
Confidence 699999999999999999983 447999999999987642223446788999999999999999999987
Q ss_pred ---hc-CC--eeeeec
Q 009703 518 ---TK-NF--TCELNN 527 (528)
Q Consensus 518 ---~~-~~--~~~~~~ 527 (528)
.+ |. ++.|++
T Consensus 240 ll~~lfG~~~~~r~rp 255 (350)
T 1b7y_A 240 LAQALFGPDSKVRFQP 255 (350)
T ss_dssp HHHHHSCSSCCEEEEE
T ss_pred HHHhhcCCCceEEEec
Confidence 33 74 355543
No 17
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.49 E-value=2e-14 Score=146.69 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCC----CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCC-----Ccce-eeCCcccch
Q 009703 379 YNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDF 448 (528)
Q Consensus 379 ydni~~~~p~~~----~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~-----~~~v-l~NP~s~e~ 448 (528)
=++|+.++|... +.+|.+++.+++|++|+++||+|+.++.+.+...+|+.|+.+.+. .+.+ | | ++
T Consensus 89 ~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i-~----e~ 163 (327)
T 3pco_A 89 AETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF-D----TT 163 (327)
T ss_dssp TTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS-S----SS
T ss_pred hCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe-C----CC
Confidence 488999998753 789999999999999999999999999998888788888776421 0133 4 2 78
Q ss_pred hHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHHh----c-C--C
Q 009703 449 EVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVLT----K-N--F 521 (528)
Q Consensus 449 ~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~~----~-~--~ 521 (528)
++|||+++|++++++++| ..|+++||+|+||..+.. .+.......+.+++++...+|+++||+|+. + | +
T Consensus 164 ~vLRThtsp~~lr~l~~~---~~pirifeiGrVyR~d~d-~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~~~ 239 (327)
T 3pco_A 164 RLLRTQTSGVQIRTMKAQ---QPPIRIIAPGRVYRNDYD-QTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDL 239 (327)
T ss_dssp CEECSCTHHHHHHHHTTC---CSSCCBCCEECCBCSCCB-TTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCSCS
T ss_pred ceecccCCHHHHHHHHhC---CCCeeEEeeccEEecCCC-cccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999874 357999999999988632 222234567888899999999999999883 4 3 5
Q ss_pred eeeeec
Q 009703 522 TCELNN 527 (528)
Q Consensus 522 ~~~~~~ 527 (528)
++.|++
T Consensus 240 ~vr~rp 245 (327)
T 3pco_A 240 QIRFRP 245 (327)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 555543
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.48 E-value=9.9e-14 Score=140.17 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=103.5
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce--eeCCcccchhHHHhhhHHHHHHHHHHccC
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v--l~NP~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
..++.+++.+.+|+.|.++||+|+.|++|++.+ .++.++... .+++ ..+++ .+..+||+|++|+|++++++|.+
T Consensus 75 ~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~-~~~~~~~~~--~~p~~~~~~~~-~~~~~LR~slsp~L~~~l~~n~~ 150 (290)
T 3qtc_A 75 RENYLGKLEREITRFFVDRGFLEIKSPILIPLE-YIERMGIDN--DTELSKQIFRV-DKNFCLRPMLTPNLYNYLRKLDR 150 (290)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEEECCCSEEETH-HHHHTTCCT--TSSGGGGCCEE-TTTEEECSCSHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCceeeHH-HHHhcCCCc--CCchhhhheee-CCCeeEcccChHHHHHHHHHhhc
Confidence 567788999999999999999999999999987 455544321 1111 22233 27899999999999999999987
Q ss_pred CC-CCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH----hcCCeeeee
Q 009703 469 HP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL----TKNFTCELN 526 (528)
Q Consensus 469 ~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~----~~~~~~~~~ 526 (528)
+. .|+|+||+|+||..+.......++..++++.++|...+|++++++++ .+|+++.+.
T Consensus 151 ~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 151 ALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp TSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred cCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCCcEEe
Confidence 64 57999999999976643333457888999999999999999999865 678876654
No 19
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.45 E-value=1.1e-13 Score=139.61 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=107.4
Q ss_pred CCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC
Q 009703 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (528)
Q Consensus 391 ~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (528)
+.++.+++.+.+|+.|.++||+|++|++|.+.+. +..++... ..+.+ +.||+++++ +|||++.|+++.++++|.++
T Consensus 69 ~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l-~~~~g~~~-~~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~~~~ 145 (288)
T 3dsq_A 69 HRPALLELEEKLAKALHQQGFVQVVTPTIITKSA-LAKMTIGE-DHPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERL 145 (288)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HHTTSSCC---CCTTTSCEEETTE-EECSCSHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HhhcCCCc-ccccEEeecccccch-hhhhcChHHHHHHHHHHHhC
Confidence 6778899999999999999999999999999875 33333321 12467 999999887 99999999999999999764
Q ss_pred -CCCccEEEeeeeeecCCCcccCcccccEEEEEEecC--CCCHHHHHHHHH----hcCC-eeeeec
Q 009703 470 -PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA--NSGFEVIYLTVL----TKNF-TCELNN 527 (528)
Q Consensus 470 -~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~f~~i~~~l~----~~~~-~~~~~~ 527 (528)
..|+|+||+|+||..+.......++..++++.+.|. ..+|++++++++ .+|+ ++.|.+
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCCcEEec
Confidence 467999999999987654333446788999999997 567999988875 7898 466653
No 20
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.06 E-value=8.1e-11 Score=124.16 Aligned_cols=137 Identities=11% Similarity=-0.021 Sum_probs=103.0
Q ss_pred CCCCCCC---CCCCC----CCChhHHHHHHHHHHHHHC--------CCceeec-ccccChHHHHHHhccCCCC-----Cc
Q 009703 379 YNNIPKR---KPASV----KPLALNEFSDLMRLEIAMN--------GFTEVLT-WILCSSKEISTMLNRQTDE-----ST 437 (528)
Q Consensus 379 ydni~~~---~p~~~----~~~~~~~~~~~lR~~l~~~--------Gf~Ev~t-~sL~s~~~~~~~~~~~~~~-----~~ 437 (528)
|+||+++ .|... ..+|.+++.+.+|+.|+++ ||+|+.+ +.++|..++|+.|+.+.+. ..
T Consensus 27 ~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~D 106 (415)
T 3cmq_A 27 HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGD 106 (415)
T ss_dssp SCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGG
T ss_pred cccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccc
Confidence 8899876 55322 7899999999999999999 9999999 9999999999999875421 11
Q ss_pred ce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCccEEEeeeeeecCCCcccCccc----------------------
Q 009703 438 AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASC---------------------- 494 (528)
Q Consensus 438 ~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~---------------------- 494 (528)
.. | | +..+|||++.|+++++++.|. | ++||+|+||.+|.. +....+
T Consensus 107 tfyi-~----~~~vLRThts~~~~~~l~~~~----~-k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lfe~g~~f~~~~~ 175 (415)
T 3cmq_A 107 NYYL-N----RTHMLRAHTSAHQWDLLHAGL----D-AFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLFSKHELFAGIKD 175 (415)
T ss_dssp SCBS-S----SSEEECSSGGGGHHHHHHTTC----S-EEEEEEEEECCCCC-BTTBCSEEEEEEEEEEEEHHHHTTTSTT
T ss_pred eEEe-c----CCeEEcCCCcHHHHHHHHHCC----C-CEEEeeeEEeccch-hhhhhHHhcCCCcEEEEeccceeccccc
Confidence 22 3 2 358999999999999998862 3 99999999998852 222112
Q ss_pred ccEEEEEEecCC--------------CCHHHHHHHHH----hc-CCe--eeee
Q 009703 495 RRRLAALYCGAN--------------SGFEVIYLTVL----TK-NFT--CELN 526 (528)
Q Consensus 495 ~~~l~~~~~~~~--------------~~f~~i~~~l~----~~-~~~--~~~~ 526 (528)
.++|+++.+|.. ++|+++||+|+ .+ |+. +.|+
T Consensus 176 ~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~ 228 (415)
T 3cmq_A 176 GESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWV 228 (415)
T ss_dssp GGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cceEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 445666666653 45999999986 33 764 5544
No 21
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=97.75 E-value=4e-05 Score=68.85 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=64.0
Q ss_pred hh-hhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccC
Q 009703 163 TH-DLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIING 241 (528)
Q Consensus 163 n~-Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg 241 (528)
-+ |+|++.+|+.++...+.+ +|.|++.....+.++++. +.+.... ..+.+|+|+|+++++++++|+-.+
T Consensus 43 ~~~D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~----d~kIP~~-----~R~~~Pll~~~~~~IiwV~G~~~s 112 (142)
T 3hj7_A 43 FVVDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRM-----ERDRWPIVEDADGRILWVPGLKKS 112 (142)
T ss_dssp EEECGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHH----HTTCCHH-----HHTTCCEEECTTCCEEEETTTEEB
T ss_pred EEECHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHH----HcCCCHH-----HhCCceEEEECCCeEEEEeCeeec
Confidence 36 999999999999988765 899998654456677765 2333321 234689999965579999999999
Q ss_pred CceeeecCCceEEE
Q 009703 242 AHSAITLKTKNVFI 255 (528)
Q Consensus 242 ~~s~It~~T~nI~i 255 (528)
+..+++++|++|+.
T Consensus 113 ~~~kv~~~T~~vl~ 126 (142)
T 3hj7_A 113 AFEAQNRGQARYIL 126 (142)
T ss_dssp TTSCCCSCCSCEEE
T ss_pred cceeeCCCCCEEEE
Confidence 99999999998763
No 22
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=96.64 E-value=0.0057 Score=62.72 Aligned_cols=129 Identities=7% Similarity=0.086 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHH-h-ccC-CCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-L-NRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~-~-~~~-~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (528)
..+++.+.+|+.+...||+|+.|-.|-..+. +.. + +.. ...++.. +..+ +.+.-+||+-+.|++.+.++.| ..
T Consensus 38 ~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el-~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~ 114 (344)
T 1z7m_A 38 SLRQIEGRLRKLFSLKNYQEVMPPSFEYTQL-YTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CS
T ss_pred HHHHHHHHHHHHHHHcCCEEecCcccCcHHH-HhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CC
Confidence 3456788999999999999999988887663 332 1 111 1123455 6665 4555689999999999999998 55
Q ss_pred CCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCH------HHHHHHHHhcCCe-eee
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF------EVIYLTVLTKNFT-CEL 525 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f------~~i~~~l~~~~~~-~~~ 525 (528)
..|+|+|.+|.||..+...-...++...+++=+.|...-. ..+..+++.+|++ +.+
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~~~~i 177 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVF 177 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 6789999999999755332223566677777666654322 2345566788886 544
No 23
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=96.53 E-value=0.005 Score=65.68 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=94.2
Q ss_pred hCCCCCCCCCCCCC-CCChh-----HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCc-ce-eeCCc----
Q 009703 377 YGYNNIPKRKPASV-KPLAL-----NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDEST-AV-VGNPR---- 444 (528)
Q Consensus 377 yGydni~~~~p~~~-~~~~~-----~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~-~v-l~NP~---- 444 (528)
....+|..+.|.-. ...|. +.+.+.+|+.+...||+|+.|-.|-..+..... + ..+ ++ .. +.+..
T Consensus 5 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~~-ke~m~~~~d~~~~g~ 81 (465)
T 3net_A 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQG-DNIIYGLEPILPPNR 81 (465)
T ss_dssp ----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC---CBEEEEEEEC----
T ss_pred cCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CCC-ccceEEEeccccccc
Confidence 35667777777655 33333 457888999999999999999999877743332 3 222 34 56 76653
Q ss_pred ----------ccchhHHHhhhHHHHHHHHHHccC-CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCC---C--C
Q 009703 445 ----------TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---S--G 508 (528)
Q Consensus 445 ----------s~e~~~lR~SLlpgLL~~~~~N~~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~--~ 508 (528)
+.+.-.||+-+.|++.+.++.|.+ ...|+|+|.+|.||..+.......++...+++=+.|.. + +
T Consensus 82 ~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp ------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhh
Confidence 245568999999999999999875 35689999999999765432234567777777555643 3 3
Q ss_pred HHH---HHHHHHhcCCe-eee
Q 009703 509 FEV---IYLTVLTKNFT-CEL 525 (528)
Q Consensus 509 f~~---i~~~l~~~~~~-~~~ 525 (528)
.+. +..+++.+|++ +.+
T Consensus 162 aEvi~l~~~~l~~lgl~~~~i 182 (465)
T 3net_A 162 AQMPAIITEIFEAVNIGDFVI 182 (465)
T ss_dssp HHHHHHHHHHHHHHTCSCEEE
T ss_pred HHHHHHHHHHHHHcCCCceEE
Confidence 333 34556788885 444
No 24
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=96.35 E-value=0.013 Score=61.27 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-CCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~~ 472 (528)
.+.+.+.+|+.+...||+|+.|-.|-..+. +...+ ....++.. +..+ +.+.=+||+-+.|++.+.++.|.+ +..|
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el-~~~~g-~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 103 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYYET-VGVVS-AILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYP 103 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETTT-HHHHS-SSCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcC-CccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCC
Confidence 345788899999999999999999876653 32222 11123455 6665 344457999999999999998876 3568
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCCC---HH---HHHHHHHhcCCe-eee
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG---FE---VIYLTVLTKNFT-CEL 525 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~---f~---~i~~~l~~~~~~-~~~ 525 (528)
+|+|.+|.||..+.......++...+++=+.|...- .+ .+..+++.+|++ +.+
T Consensus 104 ~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~~~~i 163 (400)
T 3od1_A 104 LRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLSEFKV 163 (400)
T ss_dssp EEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred eEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCCceEE
Confidence 999999999975543223356667777766665432 22 245566788884 443
No 25
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=96.27 E-value=0.012 Score=61.88 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHH-hccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~-~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (528)
.+++.+.+|+.+...||+|+.|-.|...+. +.. .+.. ..++.. +... +.+.=+||+.+.|++.+..+.|.....|
T Consensus 23 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~-~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~~~lP 99 (434)
T 1wu7_A 23 EKFIFKTAEEAAEAFGFRRIDFPSLEYLDL-YRIKSGEE-LLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQRP 99 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETHH-HHTTSCTT-GGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCCSS
T ss_pred HHHHHHHHHHHHHHcCCEEeeccccccHHH-hhhccCCc-cccceEEEECC-CCCEEEeCCCChHHHHHHHHhcCCCCCC
Confidence 456788999999999999999999887664 332 1211 123455 6655 4455589999999999999988222468
Q ss_pred ccEEEeeeeeecCCCcccCcccccEEEEEEecCCC---CHH---HHHHHHHhcCCe--eee
Q 009703 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANS---GFE---VIYLTVLTKNFT--CEL 525 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~---~f~---~i~~~l~~~~~~--~~~ 525 (528)
+|+|.+|.||..+...-...|+....++=+-|... ..+ .+..+++.+|++ +.+
T Consensus 100 ~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~~~~~i 160 (434)
T 1wu7_A 100 LRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEI 160 (434)
T ss_dssp EEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTTSEEE
T ss_pred eEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCCCceEE
Confidence 99999999997553322234666666665555432 222 234556788986 554
No 26
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=96.20 E-value=0.025 Score=59.16 Aligned_cols=131 Identities=9% Similarity=0.097 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-C-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-T-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (528)
..+++.+.+|+.+...||+|+.|-.|...+......+.. + ..++.. +... +.+.=+||+-+.|++.+..+.|..
T Consensus 19 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~ 97 (421)
T 1h4v_B 19 MHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKV 97 (421)
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhccccc
Confidence 345688999999999999999999988766422111210 0 012445 6554 445568999999999999987643
Q ss_pred CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCC---CCHHH---HHHHHHhcCCe-eee
Q 009703 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFEV---IYLTVLTKNFT-CEL 525 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~---~~f~~---i~~~l~~~~~~-~~~ 525 (528)
+..|+|+|.+|.||..+...-...++....++=+-|.. +..+. +..+++.+|++ +.+
T Consensus 98 ~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~i 161 (421)
T 1h4v_B 98 WPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKV 161 (421)
T ss_pred cCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCCceEE
Confidence 35789999999999754322222355555555344432 33333 34556788886 444
No 27
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.20 E-value=0.015 Score=60.28 Aligned_cols=125 Identities=9% Similarity=0.068 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCC-Ccce-eeCCcccchhHHHhhhHHHHHHHHHHccC-CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPK 471 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~-~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~ 471 (528)
.+.+.+.+|+.+...||+|+.|-.|-..+. +...+ .... ++.. +..+ +.+.-+||+-+.|++.+.++.|.+ +..
T Consensus 40 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~el-~~~~g-~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 40 RRAVETRLLSFVEDAGYEPVTSGLFEYVDT-LLRAR-SPESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHTTS-CTTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCeEEECCceeeHHH-HhhcC-CccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 456789999999999999999999987664 32221 1112 3445 6555 445558999999999999998865 457
Q ss_pred CccEEEeeeeeecCCC------cccCcccccEEEEEEecCCCC----HH---HHHHHHHhcCCe
Q 009703 472 PIKIYEVGDVVLLDEK------KDVGASCRRRLAALYCGANSG----FE---VIYLTVLTKNFT 522 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~------~~~~~~~~~~l~~~~~~~~~~----f~---~i~~~l~~~~~~ 522 (528)
|+|+|++|.||..+.. .....++...+++=+.|...+ .+ .+..+++.+|++
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999976543 222346666777766665522 22 244566688874
No 28
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=95.84 E-value=0.017 Score=59.17 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=59.1
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.++.+++.+++|.+++.+++.++|..+|++++. .++ .+.|.+|+-|+|+..-.=|+
T Consensus 282 ~i~~~~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~-~~~---------------------~~~V~vP~~R~DI~~~~Dli 339 (348)
T 2cxi_A 282 EFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEI-SRG---------------------RAKLKYPAFRDDIMHARDIL 339 (348)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE-ETT---------------------EEEEEECTTCCCCCSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeEEe-CCC---------------------eEEEECCCCcccCCcccHHH
Confidence 68999999999999999999999999999999952 111 48999999999999999999
Q ss_pred HHHHHHcC
Q 009703 83 QALRVFNK 90 (528)
Q Consensus 83 Rel~~~~~ 90 (528)
-|++-++|
T Consensus 340 EEVaR~yG 347 (348)
T 2cxi_A 340 EDVLIAYG 347 (348)
T ss_dssp HHHHHHHT
T ss_pred HHhHHhcC
Confidence 99988776
No 29
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=95.74 E-value=0.035 Score=58.06 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHh-ccCCC--CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-C
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML-NRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-H 469 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~-~~~~~--~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~ 469 (528)
.+++.+.+|+.+...||+|+.|-.|...+. +... +..-+ .++.. +... +.+.=+||+-+.|++.+..+.|.. +
T Consensus 21 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~ 98 (423)
T 1htt_A 21 WQRIEGTLKNVLGSYGYSEIRLPIVEQTPL-FKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLY 98 (423)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEEHHH-HHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHcCCEEecccccCHHHH-HhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhccccc
Confidence 456788999999999999999998887664 3221 21100 12455 6665 445558999999999999986643 4
Q ss_pred CCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCC---CHH---HHHHHHHhcCC--eeee
Q 009703 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANS---GFE---VIYLTVLTKNF--TCEL 525 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~---~f~---~i~~~l~~~~~--~~~~ 525 (528)
..|+|+|.+|.||..+...-...|+....++=+-|... ..+ .+..+++.+|+ ++.+
T Consensus 99 ~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~~~~i 162 (423)
T 1htt_A 99 NQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTL 162 (423)
T ss_dssp TCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGGGCEE
T ss_pred CCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCCCcEE
Confidence 57999999999997553322234566666664445432 222 24455678888 3544
No 30
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=95.73 E-value=0.042 Score=58.57 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC--CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC-CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~--~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~ 470 (528)
.+.+.+.+|+.+...||+|+.|-.|...+......+...+ .++.. +...-+.+.-+||+.+.|++....+.|.. ..
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~ 128 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYD 128 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccC
Confidence 3457888999999999999999999877642222122000 12345 65543244558999999999999988754 34
Q ss_pred CCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHH------HHHHHHHhcCCe-eee
Q 009703 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE------VIYLTVLTKNFT-CEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~------~i~~~l~~~~~~-~~~ 525 (528)
.|+|+|++|.||..+.......|+....++=+.|...-.. .+..+++.+|++ +.+
T Consensus 129 lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~~~i 190 (467)
T 4e51_A 129 GPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKL 190 (467)
T ss_dssp SCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCCceEE
Confidence 6899999999997554322234565566664555433222 245566788883 544
No 31
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=95.53 E-value=0.022 Score=60.53 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHH-hccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCC-CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PK 471 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~-~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~ 471 (528)
.+.+.+.+|+.+...||+|+.|-.|-..+. +.. .+.. -.++.. +... +.+.-+||+-+.|++.+.++.|.+. ..
T Consensus 46 ~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el-~~~~~G~~-~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 122 (456)
T 3lc0_A 46 RRHLFDVFHATAKTFGFEEYDAPVLESEEL-YIRKAGEE-ITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLL 122 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GCCCSCCH-HHHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcEeehhh-hccccccc-hhhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCC
Confidence 345788899999999999999998876553 211 0100 012345 6554 4455689999999999999998653 46
Q ss_pred CccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHH------HHHHHHHhcCC
Q 009703 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE------VIYLTVLTKNF 521 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~------~i~~~l~~~~~ 521 (528)
|+|+|.+|.||..+.......++...+++=+.|...-.. .+..+++.+|+
T Consensus 123 P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 123 PAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp SEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 899999999997554322235666777776666543322 24555678888
No 32
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=95.31 E-value=0.024 Score=59.19 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHh--ccC-CCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML--NRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~--~~~-~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (528)
.+.+.+.+|+.+...||+|+.|-.|...+. +..- +.. ...++.. +... +.+.-+||+.+.|++....+.+..
T Consensus 19 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~~ 96 (420)
T 1qe0_A 19 WRYIENQLDELMTFYNYKEIRTPIFESTDL-FARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQG 96 (420)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHH-HCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHcCCEEccCcccchHHH-hhhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhccccc
Confidence 456788899999999999999999988763 2211 000 0012344 5433 233457999999999999987654
Q ss_pred -CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCC---HH---HHHHHHHhcCCe-eee
Q 009703 469 -HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG---FE---VIYLTVLTKNFT-CEL 525 (528)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~---f~---~i~~~l~~~~~~-~~~ 525 (528)
+..|+|+|.+|.||..+.......++.....+=+.|.... .+ .+..+++.+|++ +.+
T Consensus 97 ~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~~~~i 161 (420)
T 1qe0_A 97 NPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKL 161 (420)
T ss_dssp CSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCCceEE
Confidence 4579999999999975532222245666666655554322 22 234566788986 544
No 33
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=95.10 E-value=0.034 Score=61.72 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCccc-chhHHHhhhHHHHHHHHHHccC--
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTS-DFEVVRTTLMPGILKTIGHNKD-- 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~-e~~~lR~SLlpgLL~~~~~N~~-- 468 (528)
..+.+.+.+|+.+...||+|+.|-.|.+.+. +..-+..+ -.++.. +.. ... +--+||+..-|++....+.+.+
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l-~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~sy 350 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVDL-YKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSY 350 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETHH-HHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhc
Confidence 3456888999999999999999999998774 32222110 012333 322 122 3347999999999999998865
Q ss_pred CCCCccEEEeeeeeecCCCcc-cC---cccccEEEEEEecCCCC----HH----HHHHHHHhcCC-eeee
Q 009703 469 HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANSG----FE----VIYLTVLTKNF-TCEL 525 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~~~~~~----f~----~i~~~l~~~~~-~~~~ 525 (528)
+..|+|+|++|.||..+.+.. .| .|+.....+-+-+.... |. -+..++..+|+ ++.+
T Consensus 351 r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~ 420 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF 420 (645)
T ss_dssp GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 357999999999997554321 22 35555555433333222 22 25567779999 4654
No 34
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=94.71 E-value=0.082 Score=55.85 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.+++.+.+|+.+...||+|+.|-.|-..+......+ .+.+... +... +.+.=+||+-+.+++.+.++.|. ..|+
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 105 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC--CCCc
Confidence 356788999999999999999998876553211111 1112344 6555 45555799999999999998864 4689
Q ss_pred cEEEeeeeeecCCCc--ccCcccccEEEEEEecCCC----CHHH---HHHHHHhcCCe
Q 009703 474 KIYEVGDVVLLDEKK--DVGASCRRRLAALYCGANS----GFEV---IYLTVLTKNFT 522 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~--~~~~~~~~~l~~~~~~~~~----~f~~---i~~~l~~~~~~ 522 (528)
|+|.+|.||..+... ....|+...+++=+-|... +.+. +..+++.+|++
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~ 163 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIG 163 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCC
Confidence 999999999754321 1124566667765555422 3333 34556688875
No 35
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=94.52 E-value=0.059 Score=57.22 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-CCCCcce-eeCCcccchhHHHh---hhHHHHHHHHHHccC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRT---TLMPGILKTIGHNKD 468 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~~~~~~v-l~NP~s~e~~~lR~---SLlpgLL~~~~~N~~ 468 (528)
..+++.+.+|+.+...||+|+.|-.|...+. +..-+.. .-.++.. +...-. +.-+||+ -+.+++.+....+.
T Consensus 69 ~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el-~~~sg~~d~~~~em~~~~d~~~-~~~~LrPt~ee~t~~i~r~~~~s~- 145 (458)
T 2i4l_A 69 VLKKIEQIVREEQNRAGAIELLMPTLQLADL-WRESGRYDAYGPEMLRIADRHK-RELLYGPTNEEMITEIFRAYIKSY- 145 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSCTTSEEEECTTC-CEEEECSCCHHHHHHHHHHHCCBG-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcCccCcHHH-HHhcCCccccccceEEEEeCCC-CeEEECCCChHHHHHHHHHHHhhc-
Confidence 3456888999999999999999999998764 3222211 0013445 654332 2337888 57777777776644
Q ss_pred CCCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCH----HHHHHHHHhcCCeeeee
Q 009703 469 HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGF----EVIYLTVLTKNFTCELN 526 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f----~~i~~~l~~~~~~~~~~ 526 (528)
+..|+|+|.+|.||..+.....| .++.....+-+.+.. +.+ .....+++++|+++...
T Consensus 146 ~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~ 215 (458)
T 2i4l_A 146 KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPM 215 (458)
T ss_dssp GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 36799999999999654232222 355556665444532 222 22566778899986543
No 36
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=94.51 E-value=0.1 Score=56.23 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
.+++.+.+|+.+...||+|+.|-.|-..+......+ .+.+... +... +.+.=+||+-+.+++.+.++.|. ..|+
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 158 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 158 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC--CCCc
Confidence 456788999999999999999988876553211111 1112334 5554 44555799999999999998864 4689
Q ss_pred cEEEeeeeeecCCCc-cc-CcccccEEEEEEecCCC----CHHH---HHHHHHhcCCe
Q 009703 474 KIYEVGDVVLLDEKK-DV-GASCRRRLAALYCGANS----GFEV---IYLTVLTKNFT 522 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~-~~~~~~~l~~~~~~~~~----~f~~---i~~~l~~~~~~ 522 (528)
|+|.+|.||..+... .. ..|+...+++=+.|... +.+. +..++..+|++
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~ 216 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIG 216 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 999999999754321 11 24666677775555432 2332 44556688875
No 37
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.37 E-value=0.062 Score=58.95 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=61.4
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.+..+++.+++|.+++.+++.++|..+|++++...+ +..+.+.+|+-|+|+..-.=|+
T Consensus 306 ~i~l~~~~i~~llG~~i~~~~i~~iL~~Lgf~~~~~~~--------------------~~~~~V~vPs~R~DI~~e~DLi 365 (589)
T 3l4g_B 306 KEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGD--------------------GNQIEIEIPPTRADIIHACDIV 365 (589)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEECSS--------------------SSEEEEEECSSCTTCCSHHHHH
T ss_pred EEEecHHHHHHhhCCCCCHHHHHHHHHHCCCeEEEcCC--------------------CceEEEECCCCccccCCccHHH
Confidence 68899999999999999999999999999999863211 1159999999999999999999
Q ss_pred HHHHHHcCCC
Q 009703 83 QALRVFNKQQ 92 (528)
Q Consensus 83 Rel~~~~~~~ 92 (528)
-|++-++|-.
T Consensus 366 EEVaRiyGYd 375 (589)
T 3l4g_B 366 EDAAIAYGYN 375 (589)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHHhCcc
Confidence 9999998853
No 38
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.06 E-value=0.092 Score=59.57 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=61.8
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.++.+++.+++|.+++.+++.++|..+|++++. .+ + .+.+.+|+-|+|+..-.=|+
T Consensus 408 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~--------------------~-~~~V~vPs~R~Di~~e~Dli 465 (795)
T 2rhq_B 408 PIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTL-KG--------------------E-TLTVNVPSRRKDITIKEDLI 465 (795)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE-ET--------------------T-EEEEEEETTCTTCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CC--------------------c-eEEEECCCCccccCCccHHH
Confidence 68999999999999999999999999999999952 11 1 48999999999999999999
Q ss_pred HHHHHHcCCCCC
Q 009703 83 QALRVFNKQQEI 94 (528)
Q Consensus 83 Rel~~~~~~~~~ 94 (528)
-|++-++|-..+
T Consensus 466 EEVaRiyGydnI 477 (795)
T 2rhq_B 466 EEVARIYGYDEI 477 (795)
T ss_dssp HHHHHHHCTTTS
T ss_pred HHHHHHhCcccC
Confidence 999999885433
No 39
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=94.04 E-value=0.091 Score=59.56 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=61.7
Q ss_pred CeEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHH
Q 009703 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (528)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (528)
++|.++.+++.+++|.+++.+++.++|..+|++++... + .+.+.+|+-|+|+..-.=|
T Consensus 404 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~-~---------------------~~~V~vPs~R~DI~~e~Dl 461 (795)
T 3pco_B 404 ATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGK-D---------------------EWQAVAPSWRFDMEIEEDL 461 (795)
T ss_dssp CEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEET-T---------------------EEEEECCSSCSSCSSHHHH
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC-c---------------------eEEEECCCCccccCCccHH
Confidence 47999999999999999999999999999999996321 1 4999999999999999999
Q ss_pred HHHHHHHcCCC
Q 009703 82 AQALRVFNKQQ 92 (528)
Q Consensus 82 ARel~~~~~~~ 92 (528)
+-|++-++|-.
T Consensus 462 iEEVaRiyGyd 472 (795)
T 3pco_B 462 VEEVARVYGYN 472 (795)
T ss_dssp HHHHHHHHCGG
T ss_pred HHHHHHHhCcc
Confidence 99999999853
No 40
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=93.78 E-value=0.095 Score=59.32 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=61.1
Q ss_pred eEEecHHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCccccccHHHHH
Q 009703 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (528)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~el~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (528)
+|.++.+++.+++|.+++.+++.++|..+|++++. .+ + .+.+.+|+-|+|+..-.=|+
T Consensus 403 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~--------------------~-~~~V~vPs~R~Di~~e~Dli 460 (785)
T 1b7y_B 403 AIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG-EG--------------------P-TYRVTPPSHRLDLRLEEDLV 460 (785)
T ss_dssp CEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEES-SS--------------------S-SEEEECCTTCCSCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CC--------------------c-eEEEECCCcccccCCccHHH
Confidence 68999999999999999999999999999999952 11 1 38999999999999999999
Q ss_pred HHHHHHcCCCC
Q 009703 83 QALRVFNKQQE 93 (528)
Q Consensus 83 Rel~~~~~~~~ 93 (528)
-|++-++|-..
T Consensus 461 EEVaRiyGydn 471 (785)
T 1b7y_B 461 EEVARIQGYET 471 (785)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHHhCccc
Confidence 99999988533
No 41
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.31 E-value=0.088 Score=55.99 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=59.9
Q ss_pred hhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccCCc
Q 009703 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (528)
Q Consensus 164 ~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~ 243 (528)
+|.+++..|+..+...+.+ .|.|.+.......++++. +.+..... .+..|+|++++++++.++|+--++.
T Consensus 375 ~~~~~~~~~l~vR~r~~GD-~~~~~g~~g~kklk~~f~----d~kIP~~~-----R~~~pll~~~~~~ii~v~g~~~~~~ 444 (464)
T 3a2k_A 375 VDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRME-----RDRWPIVEDADGRILWVPGLKKSAF 444 (464)
T ss_dssp ECSTTSCSCEEEEECCTTC-EEECSSSSCEEEHHHHHH----HTTCCHHH-----HHHCEEEEETTCCEEEETTTEECSC
T ss_pred ecHHHcCCCEEEeCCCCCC-EEEECCCCCCcCHHHHHH----hcCCCHHH-----HCCeeEEEECCCcEEEEeccccccc
Confidence 5788888898888877655 789987532334555554 34443321 2357999998557999999999999
Q ss_pred eeeecCCceEE
Q 009703 244 SAITLKTKNVF 254 (528)
Q Consensus 244 s~It~~T~nI~ 254 (528)
.+++++|++|+
T Consensus 445 ~~~~~~t~~~l 455 (464)
T 3a2k_A 445 EAQNRGQARYI 455 (464)
T ss_dssp SCCSSCSSCEE
T ss_pred cccCCCCceEE
Confidence 99999999985
No 42
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=93.27 E-value=0.15 Score=54.19 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=93.6
Q ss_pred CCCc-cccCCcchhhhhhhhhhCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-C
Q 009703 357 PPTR-SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-D 434 (528)
Q Consensus 357 P~~R-~DI~~~~DliEEIar~yGydni~~~~p~~~~~~~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~ 434 (528)
..+| .++-.+.|++ ..-|+--+ +|. .....+.+.+.+|+.+...||+|+.|-.|...+. +..-+..+ -
T Consensus 22 ~~h~~~~lg~~~~~~----~~~G~~d~---lP~--g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sg~~~~~ 91 (471)
T 3a32_A 22 PDSRVPVFNREFATF----TGAGVPLF---SLG--GGPIRYALAEVLAKFHARRGYYVVETPIIASTEL-FKVSGHIEFY 91 (471)
T ss_dssp TTSBCTTTCSBTHHH----HCTTCCCB---CTT--HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHTCCCTTG
T ss_pred CCchhHHHHHhcCCc----cCCEEEEE---Cch--HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHH-hhhccCcccc
Confidence 4555 2666666666 23333221 111 2233456788899999999999999999998775 33322111 1
Q ss_pred CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--C---CCCccEEEeeeeeecCCCcc-cC---cccccEEEEEEec
Q 009703 435 ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H---PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCG 504 (528)
Q Consensus 435 ~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~---~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~~ 504 (528)
.++.. + -...+.-+||+..-|++....+.+.+ + ..|+|+|.+|.||..+.... .| .++.....+-+.+
T Consensus 92 ~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 92 RNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred ccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 13444 5 22344558999999999999988743 3 67999999999997554321 33 4555555443333
Q ss_pred CCCC--------HHHHHHHHHh-cCC
Q 009703 505 ANSG--------FEVIYLTVLT-KNF 521 (528)
Q Consensus 505 ~~~~--------f~~i~~~l~~-~~~ 521 (528)
.... +..+..+++. +|+
T Consensus 170 ~~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 170 PGGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3211 2224556778 999
No 43
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=92.89 E-value=0.13 Score=56.01 Aligned_cols=130 Identities=11% Similarity=0.053 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+++.+.+|+.+...||+|+.|-.|.+.+. +...+..+ -.++.. +..- ..+.-+||+..-|++....+.+.+ +.
T Consensus 50 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~~m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 127 (572)
T 2j3l_A 50 LEKLKTIMREEFEKIDAVEMLMPALLPAEL-WKESGRYETYGPNLYRLKDR-NDRDYILGPTHEETFTELIRDEINSYKR 127 (572)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEETHH-HHHHSHHHHSCTTSCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHH-HHhcCCccccchheEEEecC-CCCeEEEccccHHHHHHHHHhhccChhh
Confidence 456788899999999999999999998874 33222110 013444 5442 234458999999999998888754 45
Q ss_pred CCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCHH----HHHHHHHhcCCeeeee
Q 009703 471 KPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFE----VIYLTVLTKNFTCELN 526 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f~----~i~~~l~~~~~~~~~~ 526 (528)
.|+|+|++|.+|..+...-.| .|+.....+-+.+.. +.+. .+..+++.+|+++.+.
T Consensus 128 lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~ 195 (572)
T 2j3l_A 128 LPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAI 195 (572)
T ss_dssp CCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 799999999999755432122 355555555433331 1222 3566788999986653
No 44
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=92.78 E-value=0.12 Score=53.71 Aligned_cols=128 Identities=11% Similarity=0.101 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+|+.+...||+|+.|-.|.+.+. +...+..+. .++.. +. ...+--+||+..-|++....+.+.+ +.
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~em~~~d--~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 109 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSGGGCCEEE--ETTEEEEECSCSHHHHHHHHTSSCCBGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHHH-HHhcCcHhhhchhhEeEe--cCCceEEEcCCCCHHHHHHHHhhhhhhhh
Confidence 456788899999999999999999999874 332221100 01111 21 1233458999999999999887654 35
Q ss_pred CCccEEEeeeeeecCCCc-ccC---cccccEEEEEEecCCC----CH----HHHHHHHHhcCC-eeee
Q 009703 471 KPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAALYCGANS----GF----EVIYLTVLTKNF-TCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~-~~~---~~~~~~l~~~~~~~~~----~f----~~i~~~l~~~~~-~~~~ 525 (528)
.|+|+|++|.+|..+..+ ..| .++.....+-+-+... .| ..+..+++.+|+ .+.+
T Consensus 110 lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~ 177 (401)
T 1evl_A 110 LPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV 177 (401)
T ss_dssp CSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEE
T ss_pred CChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 799999999999755431 223 3444444432223221 12 224567778998 4543
No 45
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=90.90 E-value=0.65 Score=49.17 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCc---ccchhHHHhhhHHHHHHHHHHccC-
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD- 468 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~---s~e~~~lR~SLlpgLL~~~~~N~~- 468 (528)
.+.+.+.+|+.+...||+|+.|-.|.+.+......+..+. .++.. +..-- ..+--+||+..-+++....+.+.+
T Consensus 41 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s 120 (459)
T 1nj8_A 41 RRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKV 120 (459)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhh
Confidence 4567888999999999999999999987742221221110 12333 43211 134568999999999999988754
Q ss_pred -CCCCccEEEeeeeeecCCCcccC---ccccc-EEEEEEecCC-----C----CHHHHHHHHHhcCCeeee
Q 009703 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALYCGAN-----S----GFEVIYLTVLTKNFTCEL 525 (528)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~---~~~~~-~l~~~~~~~~-----~----~f~~i~~~l~~~~~~~~~ 525 (528)
+.+|+++|.+|.||.-+.....| .|+.. ...+-+.+.+ + -+.....+++.||+.+.+
T Consensus 121 ~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~ 191 (459)
T 1nj8_A 121 HTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLI 191 (459)
T ss_dssp TTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred cccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEE
Confidence 45799999999999655431222 34444 4443333332 1 123355677789987554
No 46
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=90.17 E-value=0.23 Score=54.94 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcceeeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 394 ~~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~vl~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
-.+.+.+.+|+.+...||+|+.|-.|.+.+. +...+..+. .++..- --...+--+||+..-|++....+.+.+ +.
T Consensus 273 l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~~my~-~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~ 350 (642)
T 1qf6_A 273 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRD 350 (642)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHHSHHHHHGGGCEE-EEETTEEEEECSSSHHHHHHHHTTSCEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCcCccHHH-HhhcCcccccccccee-eecCCceEEecCCCCHHHHHHHHhhhhhccc
Confidence 3456788899999999999999999998875 322221100 012221 011123337999999999999887754 45
Q ss_pred CCccEEEeeeeeecCCCc-ccC---cccccEEEE-EEecCCC---C----HHHHHHHHHhcCC-eeee
Q 009703 471 KPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAA-LYCGANS---G----FEVIYLTVLTKNF-TCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~-~~~---~~~~~~l~~-~~~~~~~---~----f~~i~~~l~~~~~-~~~~ 525 (528)
+|+|+|++|.+|..+.++ -.| .|+.....+ +++.... . +..+..+++.+|+ .+.+
T Consensus 351 LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v 418 (642)
T 1qf6_A 351 LPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV 418 (642)
T ss_dssp CSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEE
T ss_pred cCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 799999999999765442 223 344444443 2333221 1 2235666778998 4554
No 47
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=88.94 E-value=1.3 Score=46.50 Aligned_cols=125 Identities=9% Similarity=-0.023 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhcc-CCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR-QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~-~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.|-.|.+.+.... .+. ....++.. +.+ +--+||++--|++....+.+.. +.
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sG~~~~f~~emy~~~~----~~l~LrPt~e~~i~~~~~~~i~s~~~ 249 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPEILIG-TGQLPKFEEDLYKCER----DNLYLIPTAEVPLTNLYREEILKEEN 249 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHH-HSCTTTTGGGSCBCTT----TCCEECSSTHHHHHGGGTTEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHHHh-cCCCCcChhhheEecC----CeEEEcCCCcHHHHHHHHhhcccccc
Confidence 445778889999999999999999999886433 232 11113444 542 3347999999998888877654 35
Q ss_pred CCccEEEeeeeeecCCCc----ccC---cccccEEEEE-EecCCCC---HH----HHHHHHHhcCCeee
Q 009703 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAAL-YCGANSG---FE----VIYLTVLTKNFTCE 524 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~~~-~~~~~~~---f~----~i~~~l~~~~~~~~ 524 (528)
+|+|++.+|.+|.....+ -.| .++...+-+. ++..... ++ .+..+++.||+.+.
T Consensus 250 LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~r 318 (425)
T 2dq3_A 250 LPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYR 318 (425)
T ss_dssp CCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence 799999999999765432 112 2343444433 3333211 22 35566779999865
No 48
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=88.52 E-value=0.8 Score=48.53 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHH-HHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCc-ccchhHHHhhhHHHHHHHHHHccC--
Q 009703 395 LNEFSDLMRLEI-AMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR-TSDFEVVRTTLMPGILKTIGHNKD-- 468 (528)
Q Consensus 395 ~~~~~~~lR~~l-~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~-s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (528)
.+.+.+.+|+.+ ...||+|+.|-.|.+.+.. ...+..+. .++.. +...- ..+--+||+.--|++....+...+
T Consensus 67 ~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~ 145 (460)
T 3uh0_A 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLW-EKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSY 145 (460)
T ss_dssp HHHHHHHHHHHHHHTSCCEECCCCSEEEHHHH-HHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBG
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCeeccHHHH-HhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccc
Confidence 456788899999 8999999999999998853 32222111 13344 54321 234457999999999888766554
Q ss_pred CCCCccEEEeeeeeecCCCc-ccC---cccccEEEE-EEecCCCC-------HHHHHHHH-HhcCCe
Q 009703 469 HPKPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAA-LYCGANSG-------FEVIYLTV-LTKNFT 522 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~-~~~---~~~~~~l~~-~~~~~~~~-------f~~i~~~l-~~~~~~ 522 (528)
+.+|+|++++|.||...... -.| .++.....+ +++..... +..+..++ +.||+.
T Consensus 146 r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 146 NELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp GGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35799999999999755432 133 344434443 23433211 22355566 778886
No 49
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=87.75 E-value=1.2 Score=46.71 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-CCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.|-.|.+.+..... +.. .-.++.. +.+ +--+||++--+++....+.+.. +.
T Consensus 169 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~ 243 (421)
T 1ses_A 169 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEA 243 (421)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchh
Confidence 3457788899999999999999999998864332 322 1113445 653 3336888888888877776643 34
Q ss_pred CCccEEEeeeeeecCCCc---c-cC---cccccEEEE-EEecC--CC---CH----HHHHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKK---D-VG---ASCRRRLAA-LYCGA--NS---GF----EVIYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~-~~---~~~~~~l~~-~~~~~--~~---~f----~~i~~~l~~~~~~~~~ 525 (528)
+|+++|++|.+|.....+ + .| .++....-+ .++.+ .. .| .....+++.||+.+.+
T Consensus 244 LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rv 315 (421)
T 1ses_A 244 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRL 315 (421)
T ss_dssp CSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEE
Confidence 799999999999755321 1 22 234333332 34444 11 12 2355667799998753
No 50
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=87.09 E-value=0.83 Score=48.63 Aligned_cols=130 Identities=9% Similarity=-0.065 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCCc---ccchhHHHhhhHHHHHHHHHHccC-
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD- 468 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP~---s~e~~~lR~SLlpgLL~~~~~N~~- 468 (528)
.+.+.+.+|+.+...||+|+.|-.|.+.+......+..+ -.++.. +..-- ..+--+||+..-+++....+.+.+
T Consensus 47 ~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s 126 (477)
T 1hc7_A 47 WENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRS 126 (477)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhc
Confidence 456788899999999999999999998764211011110 012333 43211 023458999999999999988754
Q ss_pred -CCCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC-----CCHHH----HHHHH-HhcCCeeee
Q 009703 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFEV----IYLTV-LTKNFTCEL 525 (528)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~-----~~f~~----i~~~l-~~~~~~~~~ 525 (528)
+.+|+++|.+|.||.-+.. ..| .|+.....+=+.+.+ +-+.. ...++ +.||+.+.+
T Consensus 127 ~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~ 196 (477)
T 1hc7_A 127 WRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIE 196 (477)
T ss_dssp GGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred cccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3579999999999965533 223 244334443332432 12222 46677 688987544
No 51
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=86.43 E-value=1.6 Score=46.13 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCC-CCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~-~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.+-.|.+.+... .-+.... .++.. +.+ +--+||++--+++....+.+.. +.
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d----~~l~LrPt~e~~~~~~~~~~~~s~~~ 270 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVEE-GSTSFEDFEDVIYKVED----EDLYLIPTAEHPLAGMHANEILDGKD 270 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-TTSCTTHHHHTCCBBTT----SSCEECSSTHHHHHHTTTTEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHHH-hcCCCCCChHhhCeecC----CcEEEcCcCcHHHHHHHHhCccCchh
Confidence 34578888999999999999999999988532 2222110 12334 542 3346999999999888887754 45
Q ss_pred CCccEEEeeeeeecCCCc---c-cC---cccccEEE-EEEecCCCC-------HHHHHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKK---D-VG---ASCRRRLA-ALYCGANSG-------FEVIYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~-~~---~~~~~~l~-~~~~~~~~~-------f~~i~~~l~~~~~~~~~ 525 (528)
+|++++++|.+|...... + .| .++....= ..++..... ......+++.||+.+.+
T Consensus 271 LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv 340 (455)
T 2dq0_A 271 LPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRV 340 (455)
T ss_dssp CSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 799999999999755431 1 11 23322222 234444332 23456667799998754
No 52
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=86.03 E-value=0.76 Score=45.20 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=70.8
Q ss_pred HHHHHH--HHHHHCCCceeecccccChHHHHHHhccCCCCCcceeeCCcccchhHHHhhhHHHHHHHHHHccCC-C-CCc
Q 009703 398 FSDLMR--LEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDH-P-KPI 473 (528)
Q Consensus 398 ~~~~lR--~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~-~~~ 473 (528)
+++.+| +.+...||+|+.|-.|-..+. +. . + .+... +.+.=.||+-+.|++. +++.+. . .|+
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l-~~---~----d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEE-PA---G----N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSS-CC---S----S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhh-hc---c----c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 344445 889999999999877765442 11 0 0 11111 3345589999999999 445443 5 789
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCH------HHHHHHHHhcCCe-eee
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF------EVIYLTVLTKNFT-CEL 525 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f------~~i~~~l~~~~~~-~~~ 525 (528)
|+|++|.||..+.. +.++....++=+.|...-. .-+..+++.+|++ +.+
T Consensus 72 R~~y~g~vfR~e~~---~~Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~~~~i 127 (275)
T 1usy_A 72 KVWYADFVYRYSGS---DLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIV 127 (275)
T ss_dssp EEECCEEEEEEETT---EEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEeceEEecCCC---CCCeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999975543 2267777777565654322 2355667788885 544
No 53
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=83.78 E-value=3.2 Score=44.80 Aligned_cols=128 Identities=7% Similarity=-0.101 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (528)
.+.+.+.+|+.+...||+|+.+-.+++.+........+...++.. +.+ +--+|+++-=+++....+.... +.+
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~L 353 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 353 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhhC
Confidence 345777888999999999999999999886443322222123444 654 2346788777776655544332 347
Q ss_pred CccEEEeeeeeecCCCc----ccC---cccccEE-EEEEecCC--CCHH-------HHHHHHHhcCCeeeee
Q 009703 472 PIKIYEVGDVVLLDEKK----DVG---ASCRRRL-AALYCGAN--SGFE-------VIYLTVLTKNFTCELN 526 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~~~----~~~---~~~~~~l-~~~~~~~~--~~f~-------~i~~~l~~~~~~~~~~ 526 (528)
|++++++|.+|.....+ -.| .++..+. +..++... ...+ ....+++.||+.|...
T Consensus 354 Plr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv 425 (536)
T 3err_A 354 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLV 425 (536)
T ss_dssp SEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999654321 122 2232222 33455554 2222 2455677999987654
No 54
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=83.54 E-value=2.7 Score=41.70 Aligned_cols=109 Identities=15% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-C-CCCcce-eeCCcccchhHHHhhhHHHH-HHHHHHccCCCC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-T-DESTAV-VGNPRTSDFEVVRTTLMPGI-LKTIGHNKDHPK 471 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~-~~~~~v-l~NP~s~e~~~lR~SLlpgL-L~~~~~N~~~~~ 471 (528)
.++.+.+|+.+...||.|+-|-.|.+..+ .+... . ++.... +. -......||+|- .+ ++.+.. . .
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~---~~~~~~~~e~a~~f~~~--~~~~~~~L~~Sp--e~~~~~l~~---~-g 87 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD---PLWPDPAGEGMEPAEVE--IYGVKMRLTHSM--ILHKQLAIA---M-G 87 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC---CCCSCTTCCCCCCCEEE--ETTEEEEECSCS--HHHHHHHHH---T-T
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc---hhccCCCCCcceeEEEE--cCCCCEEeccCh--HHHHHHHhh---c-C
Confidence 45788899999999999999999988611 11111 0 001112 21 001122444432 22 222221 2 2
Q ss_pred CccEEEeeeeeecCC--Cc-ccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 472 PIKIYEVGDVVLLDE--KK-DVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 472 ~~~lFEiG~V~~~~~--~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+.|+|++|+||..+. .. .....+...+-+-+++. ++.++..+++
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e 134 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIE 134 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHH
T ss_pred ccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHH
Confidence 589999999997665 21 12223566777777776 4777776655
No 55
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=81.24 E-value=1.5 Score=46.95 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhc---cCCCCCcce-eeCCc---ccchhHHHhhhHHHHHHHHHHcc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---RQTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~---~~~~~~~~v-l~NP~---s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
.+.+.+.+|+.+.. ||+|+.|-.|.+.+......+ .+. ++.. +..-- ..+--+||+..-+++....+.+.
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~--~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~ 150 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFE--DEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWV 150 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTT--TTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCC--cceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhh
Confidence 34578888999988 999999999998774321011 111 2333 43210 02334799999999999999885
Q ss_pred C--CCCCccEEEeeeeeecCCCcccC---ccccc-EEEEEEecC--C---CC----HHHHHHHHHhcCCeeee
Q 009703 468 D--HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALYCGA--N---SG----FEVIYLTVLTKNFTCEL 525 (528)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~~~---~~~~~-~l~~~~~~~--~---~~----f~~i~~~l~~~~~~~~~ 525 (528)
. +.+|+++|.+|.+|..+.....| .++.. ...+-+.+. . +- ......+++.||+.+.+
T Consensus 151 ~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~ 223 (501)
T 1nj1_A 151 RSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLI 223 (501)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred cccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4 35799999999999755431223 23444 344322232 1 12 22356677789988654
No 56
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.59 E-value=10 Score=40.40 Aligned_cols=130 Identities=10% Similarity=0.034 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCC-cce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~-~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (528)
.+.+.+.+++.+...||+|+.+-.|++.+............+ +.. +..--..+ -+||++-=+++....+.... +.
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~-l~L~PTaE~~~~~l~~~~i~s~~~ 300 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFED-LNLAGTAEVGLAGYFMDHSVAFRD 300 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSS-CEECSSHHHHHHHHHTTEEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCe-EEECCcCcHHHHHHHhhccCCccc
Confidence 345778889999999999999999999886433222221112 334 53211122 36888888888777665544 35
Q ss_pred CCccEEEeeeeeecCCCc---ccC---cccccEE-EEEEecCC-----CCHH----HHHHHHHhcCCeeee
Q 009703 471 KPIKIYEVGDVVLLDEKK---DVG---ASCRRRL-AALYCGAN-----SGFE----VIYLTVLTKNFTCEL 525 (528)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~~~---~~~~~~l-~~~~~~~~-----~~f~----~i~~~l~~~~~~~~~ 525 (528)
+|++++++|.+|...... ..| .++.... +..++... .-|+ ....+++.||+.|..
T Consensus 301 LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrv 371 (501)
T 1wle_A 301 LPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRV 371 (501)
T ss_dssp CSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 799999999999754330 112 1222222 33455542 2233 355667799998765
No 57
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=78.10 E-value=5.8 Score=42.55 Aligned_cols=130 Identities=10% Similarity=0.047 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCc-------ccchhHHHhhhHHHHHHHHHHcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR-------TSDFEVVRTTLMPGILKTIGHNK 467 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~-------s~e~~~lR~SLlpgLL~~~~~N~ 467 (528)
+.+.+.+++.+...||+|+.+-.|++.+..........-.++.. +...- ..+--+||++--+++....+...
T Consensus 205 raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei 284 (522)
T 3vbb_A 205 QALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEW 284 (522)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCE
T ss_pred HHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhe
Confidence 45677788888899999999999999886433222211113444 54321 12233677877777655444333
Q ss_pred C--CCCCccEEEeeeeeecCCCc---c-cC-cc--cccEE-EEEEecCCC--CHH---H----HHHHHHhcCCeeee
Q 009703 468 D--HPKPIKIYEVGDVVLLDEKK---D-VG-AS--CRRRL-AALYCGANS--GFE---V----IYLTVLTKNFTCEL 525 (528)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~---~-~~-~~--~~~~l-~~~~~~~~~--~f~---~----i~~~l~~~~~~~~~ 525 (528)
. +.+|++++++|.+|.....+ + .| .| +..+. +..++.... ..+ . ...+++.||+.|..
T Consensus 285 ~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrv 361 (522)
T 3vbb_A 285 LRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHI 361 (522)
T ss_dssp ECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 2 34699999999999755421 1 22 12 32222 334555543 332 2 45567799998765
No 58
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=76.75 E-value=4.1 Score=43.74 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhcc-CCCCCcce-eeCCc---ccchhHHHhhhHHHHHHHHHHccC-
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR-QTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD- 468 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~-~~~~~~~v-l~NP~---s~e~~~lR~SLlpgLL~~~~~N~~- 468 (528)
.+.+.+.+|+.+...||+|+.+-.|.+.+......+. ..-.++.. +..-- ..+--+||++--|++....+...+
T Consensus 58 ~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~S 137 (518)
T 3ial_A 58 ENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRS 137 (518)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcc
Confidence 4567888999999999999999999887742110000 00012334 44311 123447999999999998877654
Q ss_pred -CCCCccEEEeeeeeecCCCcccC---cccccEEEEEEecCC--C---CHH----HHHHHH-HhcCCeeee
Q 009703 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN--S---GFE----VIYLTV-LTKNFTCEL 525 (528)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~~~~--~---~f~----~i~~~l-~~~~~~~~~ 525 (528)
+.+|++++++|.||........| .++....-+-..|.+ . -+. ....++ +.||+.+.+
T Consensus 138 yrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~ 208 (518)
T 3ial_A 138 YKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQK 208 (518)
T ss_dssp GGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEE
T ss_pred cccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 45799999999999755332233 244444444333321 1 122 235567 788887643
No 59
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=75.65 E-value=5.3 Score=42.46 Aligned_cols=129 Identities=9% Similarity=0.019 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccC--CCCC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPKP 472 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~~ 472 (528)
..+.+.+++.+...||+|+++-.|++.+..........-.++.. +.+. .+--+|+++-=+++....+.-.. +.+|
T Consensus 212 ~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dLP 289 (484)
T 3lss_A 212 VALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKEP 289 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSSC
T ss_pred HHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhccccchhhCC
Confidence 45677888888899999999999999886432211110012344 6543 22236677666666444333222 3469
Q ss_pred ccEEEeeeeeecCCCc---c-cC---cccccEE-EEEEecCCC--CHHH-------HHHHHHhcCCeeeee
Q 009703 473 IKIYEVGDVVLLDEKK---D-VG---ASCRRRL-AALYCGANS--GFEV-------IYLTVLTKNFTCELN 526 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~---~-~~---~~~~~~l-~~~~~~~~~--~f~~-------i~~~l~~~~~~~~~~ 526 (528)
++++++|.+|.....+ + .| .++..+. +..+|.... ..++ ...+++.||+.|...
T Consensus 290 lr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv 360 (484)
T 3lss_A 290 LKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVV 360 (484)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred eeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 9999999999754321 1 22 2232222 244566544 3333 455677999987653
No 60
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=70.16 E-value=11 Score=39.42 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCc
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (528)
..++.+.+|+.|...||.|+-|-.|++... +...+.. +. .-...-+||+|---- ++.+... ..
T Consensus 137 rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~--------e~~~~~f~~~--~~~~~~~L~~Spql~-~~~~~~g-----~~ 200 (429)
T 1wyd_A 137 QSLALKAFRETLYKEGFIEIFTPKIIASAT--------EGGAQLFPVI--YFGKEAFLAQSPQLY-KELMAGV-----VE 200 (429)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCS--------STTCCCCEEE--ETTEEEEECSCCHHH-HHHHHHH-----HS
T ss_pred HHHHHHHHHHHHhhCCCEEEECCEEEeeCC--------CCCceeEEEe--cCCceEEecCCcHHH-HHHHHhC-----cC
Confidence 345788899999999999999999986421 0001222 21 001112344222111 2222221 36
Q ss_pred cEEEeeeeeecCCCc-ccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+|++|+||..+... .....+...+-+-+++. ++.++..+++
T Consensus 201 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e 243 (429)
T 1wyd_A 201 RVFEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLE 243 (429)
T ss_dssp EEEEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHH
T ss_pred ceEEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHH
Confidence 999999999765431 11223556676666665 4777666554
No 61
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=67.06 E-value=13 Score=38.95 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHH-HHHHHHccCCCCC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGI-LKTIGHNKDHPKP 472 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgL-L~~~~~N~~~~~~ 472 (528)
..++.+.+|+.|...||.|+-|-.|.+... +...+.. + | .....-+||+| |.| ++.+.. .+
T Consensus 138 rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~--------e~~~~~f~~-~-~~~~~~~Lr~S--pel~~~~~~~-----g~ 200 (434)
T 1x54_A 138 KETLIMAAREWLLKDGWHEVFPPILVTGAV--------EGGATLFKL-K-YFDKYAYLSQS--AQLYLEAAIF-----GL 200 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCS--------SCGGGCCEE-E-ETTEEEEECSC--SHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEeecC--------CCCceeEEE-e-ecCCcEEeccC--hHHHHHHHhc-----Cc
Confidence 345788899999999999999999986421 0011222 2 1 11112345522 222 121221 14
Q ss_pred ccEEEeeeeeecCCCc-ccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 473 IKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 473 ~~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
.|+|++|+||..+... .....+...+-+-+++. ++.++..+++
T Consensus 201 ~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e 244 (434)
T 1x54_A 201 EKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEE 244 (434)
T ss_dssp SEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHH
T ss_pred cceEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHH
Confidence 7999999999765431 11223566777766665 4777766655
No 62
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.41 E-value=8.6 Score=40.86 Aligned_cols=128 Identities=6% Similarity=0.081 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHcc--C---C
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK--D---H 469 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~--~---~ 469 (528)
+.+.+.+++.+...||+|+++-.|++.+..........-.++.. +.+. ..++-.+.|+=.| + -.+-.|. + +
T Consensus 189 ~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~-~~~~~LipTaE~p-l-~~l~~~ei~~S~y~ 265 (485)
T 3qne_A 189 QALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG-EDEKYLIATSEQP-I-SAYHAGEWFESPAE 265 (485)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET-TEEEEECSSTHHH-H-HHHTTTCEESSHHH
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC-CCeEEEeccccHH-H-HHHHhccccccchh
Confidence 34677788888899999999999999886432211111013444 6542 2233333344334 2 2333332 1 2
Q ss_pred CCCccEEEeeeeeecCCCc---c-cC---cccccEE-EEEEecCCCCH---H----HHHHHHHhcCCeeeee
Q 009703 470 PKPIKIYEVGDVVLLDEKK---D-VG---ASCRRRL-AALYCGANSGF---E----VIYLTVLTKNFTCELN 526 (528)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~---~-~~---~~~~~~l-~~~~~~~~~~f---~----~i~~~l~~~~~~~~~~ 526 (528)
.+|++++++|.+|.....+ + .| .++.... +..++..+... + ....+++.||+.|...
T Consensus 266 dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv 337 (485)
T 3qne_A 266 QLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVV 337 (485)
T ss_dssp HCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 4699999999999654322 1 22 2232222 23345443322 2 2455677999987653
No 63
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=64.21 E-value=5.2 Score=42.93 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHCCCceeecccccChHHHHHH-hccCCC-CCcce-eeCCcc---cchhHHHhhhHHHHHHHHHHccC
Q 009703 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTD-ESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (528)
Q Consensus 395 ~~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~-~~~~~~-~~~~v-l~NP~s---~e~~~lR~SLlpgLL~~~~~N~~ 468 (528)
.+.+.+.+|+.+...||+|+.|-.|.+.+. +.. .+..+. .++.. +...-. .+--+||++--|++....+...+
T Consensus 64 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~ 142 (519)
T 4hvc_A 64 WEAIKDFFDAEIKKLGVENCYFPMFVSQSA-LEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQ 142 (519)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHH-HhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhcc
Confidence 456788899999999999999999998874 221 111110 12233 432111 22348999999999998877654
Q ss_pred --CCCCccEEEeeeeeecC
Q 009703 469 --HPKPIKIYEVGDVVLLD 485 (528)
Q Consensus 469 --~~~~~~lFEiG~V~~~~ 485 (528)
+.+|+|++++|.||.-.
T Consensus 143 SyrdLPlrl~q~g~~fR~E 161 (519)
T 4hvc_A 143 SHRDLPIKLNQWCNVVRWE 161 (519)
T ss_dssp SGGGCCEEEEEEEEEECCC
T ss_pred ccccCCeEEEEEcCeeeCC
Confidence 35799999999999755
No 64
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=60.94 E-value=20 Score=37.29 Aligned_cols=102 Identities=14% Similarity=-0.002 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.|+-|-.|.+...- ...+.. +. .-...-+||+|---- ++.+. + + ..|
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e--------~~~~~f~~~--~~g~~~~L~~Spel~-~~~l~-~---g-~~r 192 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAE--------GGSGLFGVD--YFEKRAYLAQSPQLY-KQIMV-G---V-FER 192 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC--------------------------------------CHHH-HHHHH-H---H-HSE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCC--------CCceeEEEe--eCCCcEEeeeCHHHH-HHHHh-h---C-CCc
Confidence 457888999999999999999999865320 001122 21 111223566443222 24443 2 1 259
Q ss_pred EEEeeeeeecCCCccc--CcccccEEEEEEecCCCCHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDV--GASCRRRLAALYCGANSGFEVIYLT 515 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~--~~~~~~~l~~~~~~~~~~f~~i~~~ 515 (528)
+|+||+||..+.. ++ ...+...+-+-+++.. +++++-.+
T Consensus 193 vf~ig~~FR~E~~-~~~RH~pEFtqle~e~~~~~-d~~dlm~l 233 (422)
T 1n9w_A 193 VYEVAPVWRMEEH-HTSRHLNEYLSLDVEMGFIA-DEEDLMRL 233 (422)
T ss_dssp EEEEEEC--------------CCEEEEEEEESCS-SHHHHHHH
T ss_pred eeEEeCceECCCC-CCCcccceeEEeeeeeeCCC-CHHHHHHH
Confidence 9999999976543 22 2224556666566642 35554433
No 65
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=57.79 E-value=22 Score=38.37 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcceeeCCcccchhHHHhhhHHHHH--HHHHHccCCCCCcc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGIL--KTIGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl~NP~s~e~~~lR~SLlpgLL--~~~~~N~~~~~~~~ 474 (528)
++.+.+|+.|...||.||-|-.|++..- +- +......|-...+ -+||+| |.|- ..++ .+. -|
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~--eg------ga~~F~v~~~~~~-~yL~~S--pql~~k~ll~----~g~-~r 312 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSS--EG------GSNIFEVKYFDRK-AYLAQS--PQLYKQMAIM----GDF-RK 312 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC----------------------------CCBCSC--THHHHHHHHT----TTC-CE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccC--CC------CcceeEEecCCCc-eEeccC--HHHHHHHHHh----cCc-Cc
Confidence 4667789999999999999999987641 10 0111111222222 256666 3444 2332 222 48
Q ss_pred EEEeeeeeecCC
Q 009703 475 IYEVGDVVLLDE 486 (528)
Q Consensus 475 lFEiG~V~~~~~ 486 (528)
+||||++|...+
T Consensus 313 VfeI~~~FR~E~ 324 (548)
T 3i7f_A 313 VFEVGPVFRAEN 324 (548)
T ss_dssp EEEEEEECCCSC
T ss_pred EEEEeeeEecCC
Confidence 999999997554
No 66
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=55.83 E-value=13 Score=38.69 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=54.8
Q ss_pred hhhhccCCCeEEEecCCCceEEEeCCCcccCChHHHHHhhcccccccceeecccCCCcceEEEeCCCCeeecCCcccCCc
Q 009703 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (528)
Q Consensus 164 ~Dldki~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ii~~~~~~pVI~D~~g~vlslagIigg~~ 243 (528)
+|++++..|+..+...+.+ .|. ++.......++++. +.+.... ..+..|+|++++ ++++++|+--+..
T Consensus 348 ~~~~~~~~~l~vR~r~~Gd-~~~-~g~~g~kklk~~~~----d~kiP~~-----~R~~~pll~~~~-~ii~v~g~~~~~~ 415 (433)
T 1ni5_A 348 IRPPRADEAVSVRFKAPGL-LHI-VGRNGGRKLKKIWQ----ELGVPPW-----LRDTTPLLFYGE-TLIAAAGVFVTQE 415 (433)
T ss_dssp ECCCCTTSCEEEESCCCSE-ECB-TTCSSCEEHHHHHH----HHTCCGG-----GTTSSCEEEETT-EEEEETTTEEBGG
T ss_pred cCcccCCCCEEEEecCCCc-Eee-cCCCCCchHHHHHH----HcCCCHH-----HHCCeeEEEECC-EEEEEeceeecce
Confidence 6788888898888877655 344 65432234555554 3444432 235689999876 6999999988888
Q ss_pred eeeecCCceEEEE
Q 009703 244 SAITLKTKNVFIE 256 (528)
Q Consensus 244 s~It~~T~nI~iE 256 (528)
.+++++|+ +-|+
T Consensus 416 ~~~~~~~~-~~i~ 427 (433)
T 1ni5_A 416 GVAEGENG-VSFV 427 (433)
T ss_dssp GBCSSSCC-EEEE
T ss_pred eccCCCCc-eEEE
Confidence 89999877 4443
No 67
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=50.03 E-value=39 Score=35.84 Aligned_cols=104 Identities=16% Similarity=0.079 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee-CCcccchhHHHhhhHHHHHH-HHHHccCCCCCc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG-NPRTSDFEVVRTTLMPGILK-TIGHNKDHPKPI 473 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~-NP~s~e~~~lR~SLlpgLL~-~~~~N~~~~~~~ 473 (528)
++.+.+|+.|...||.||-|-.|++... + ....+. +. |-...+ -+||+|- .|.. .+.. . ---
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----G---a~a~~F~~~~~~~~~~-~yLr~Sp--qLylk~l~v---~-G~~ 243 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAG-----G---AAARPFITHHNALDMT-LYMRIAI--ELHLKRLIV---G-GLE 243 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----S---SSSCCCEEEETTTTEE-EEECSCS--HHHHHHHHH---T-TCC
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCC-----C---CcccceEecccCCCce-eEEecCH--HHHHHHHhh---c-ccC
Confidence 4677899999999999999999986421 1 001222 32 433333 3577553 3332 2211 1 126
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+||||++|..++.......|...|-+=++.. +++++-.+++
T Consensus 244 rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~--d~~dlm~l~E 285 (493)
T 3a74_A 244 KVYEIGRVFRNEGISTRHNPEFTMLELYEAYA--DFRDIMKLTE 285 (493)
T ss_dssp EEEEEEEEECCCCCBTTBCSEEEEEEEEEETC--CHHHHHHHHH
T ss_pred ceEEECccccCCCCCcccCCceeEEEEEecCC--CHHHHHHHHH
Confidence 99999999976544222233455555544443 4666544443
No 68
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=49.93 E-value=37 Score=36.11 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-e-eCCcccchhHHHhhhHHHHH-HHHHHccCCCCCc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l-~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~~~ 473 (528)
++.+.+|+.|...||.||-|-.|++... + ....+. + .|-...+ -+||+|-- |. +.+.. .+ --
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~-----G---a~ar~F~t~~~~~~~~-~yL~~Spq--Lylk~L~v---~G-~~ 252 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDLD-MYLRIAPE--LYLKRLVV---GG-FE 252 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCC-----S---SCCCCCEEEETTTTEE-EEECSCSH--HHHHHHHH---HT-CC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCC-----C---CcccceEeccCCCCce-EEeccCHH--HHHHHHhh---cC-CC
Confidence 4677899999999999999999986421 1 001122 2 2433333 34775533 22 22211 11 25
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+||||++|..++.......|...|-+=++.. +++++-.+++
T Consensus 253 rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~--d~~dlm~l~E 294 (504)
T 1e1o_A 253 RVFEINRNFRNEGISVRHNPEFTMMELYMAYA--DYHDLIELTE 294 (504)
T ss_dssp EEEEEEEEECCCCCCC-CCSEEEEEEEEEESC--CHHHHHHHHH
T ss_pred cEEEEcccccCCCCCccccCceeeeeeeecCC--CHHHHHHHHH
Confidence 89999999976544222223445555444443 5666544443
No 69
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=49.83 E-value=46 Score=35.55 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHH-HHHccCCCCCcc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~-~~~N~~~~~~~~ 474 (528)
++.+.+|+.|...||.||-|-.|++... +. ..+..+ -.|-...+ -+||.| |.|..- +.. .+. -|
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~g-----Ga--~a~~F~t~~~~~~~~-~yL~~S--pqL~lk~liv---~g~-~r 246 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPG-----GA--VAKPFITYHNELDMN-LYMRIA--PELYHKMLVV---GGI-DR 246 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SCCCCEEEETTTTEE-EEECSC--SHHHHHHHHH---TTC-CE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCC-----Cc--cccceeeecccCCcc-eEeeCC--HHHHHHHHHh---cCc-Cc
Confidence 4667899999999999999999986421 10 001112 23444333 367765 444432 221 122 48
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+||||++|...+.......|...|=+=.+. ++++++-.+++
T Consensus 247 Vyeig~~FR~E~~~trH~pEFtmlE~e~af--~d~~dlm~l~E 287 (521)
T 3bju_A 247 VYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYHDLMEITE 287 (521)
T ss_dssp EEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHH
T ss_pred eEEEEcceeCCCCCCccchhhhhhhhhhhc--CCHHHHHHHHH
Confidence 999999997654322222233444433333 35766544443
No 70
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=49.05 E-value=25 Score=36.69 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCceeecccccCh
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSS 422 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~ 422 (528)
++.+.+|+.|...||.||-|-.|++.
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s 162 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQT 162 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeec
Confidence 46778999999999999999999753
No 71
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=48.57 E-value=44 Score=36.54 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHHHH-HCCCceeecccccChHHHHHHhccCCCCCccee-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 397 EFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~-~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
++...+|+.|. ..||.||-|-.|++... . + ....++ .|-. ..+-+|++| |.|.+-+.- ..+. -|
T Consensus 153 ~i~~~iR~f~~~~~gF~EVeTPiL~~st~--~--G----A~~F~v~~~~~-g~~~~L~qS--pql~kq~l~--v~g~-~r 218 (617)
T 4ah6_A 153 QMVMKMREYLCNLHGFVDIETPTLFKRTP--G--G----AKEFLVPSREP-GKFYSLPQS--PQQFKQLLM--VGGL-DR 218 (617)
T ss_dssp HHHHHHHHHHHTTSCCEECCCCSSBCCCC--S--S----SCCCEEECSST-TCEEECCSS--TTHHHHHHH--HTSC-SE
T ss_pred HHHHHHHHHHHhcCCeEEEeCCeeccCCC--C--C----CcCceeccccC-CcccccccC--HHHHHHHHH--hccc-Cc
Confidence 46778999997 69999999999985321 0 0 011122 2211 122356655 333332211 0122 38
Q ss_pred EEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
+||||++|..+........|...|=.-++. .+++++-.+++
T Consensus 219 vfqi~~~FR~E~~~t~r~pEFt~lE~e~af--~d~~d~m~~~E 259 (617)
T 4ah6_A 219 YFQVARCYRDEGSRPDRQPEFTQIDIEMSF--VDQTGIQSLIE 259 (617)
T ss_dssp EEEEEEEECCCSSCSSSCSEEEEEEEEEES--CCHHHHHHHHH
T ss_pred EEEEEhheecccCCCCcCcceecceeeecC--CCHHHHHHHHH
Confidence 999999997544321112334455443333 35666655554
No 72
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=47.05 E-value=39 Score=34.10 Aligned_cols=106 Identities=12% Similarity=-0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-ee--CCccc--chhHHHhhhHHHHHH--HHHHccC
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--NPRTS--DFEVVRTTLMPGILK--TIGHNKD 468 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~--NP~s~--e~~~lR~SLlpgLL~--~~~~N~~ 468 (528)
.++.+.+|+.|...||.||-|-.|++..-. +....+. +. .|-.. .--+||+| |.|-. .++..
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-------~a~~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~l~~~g-- 108 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVT-------DIHLVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRLLVAG-- 108 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCC-------CTTCCCCEEEECCSTTSCCEEEEECSC--SHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecCCC-------CCccceEEEEecCcccccCCCEeecCC--HHHHHHHHHHcC--
Confidence 357788999999999999999999963210 0001112 21 12110 12346665 23322 23322
Q ss_pred CCCCccEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
. -|+||||+||..++.+.....|...|=+=.+. .+++++-.+++
T Consensus 109 --~-~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~d~m~~~E 152 (345)
T 3a5y_A 109 --C-GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--YDMYRLMNEVD 152 (345)
T ss_dssp --C-CSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHH
T ss_pred --C-CcEEEEEcceeCCCCcccccchhheeeeeeeC--CCHHHHHHHHH
Confidence 2 38999999997655422222344455443344 35777666655
No 73
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=46.33 E-value=58 Score=34.87 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHH-HH-HHHccCCCCCc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KT-IGHNKDHPKPI 473 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL-~~-~~~N~~~~~~~ 473 (528)
++...+|+.|...||.||-|-.|++... +. .....+ -.|-...++ +||.| |.|- +. +.. +. -
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~g-----GA--~a~pF~t~~n~~~~~~-yL~~S--pqLylk~L~v~----G~-~ 273 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPG-----GA--AAKPFVTHHNALDMEM-FLRIA--PELYLKRLIVG----GF-E 273 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SSCCCEEEETTTTEEE-EECSC--SHHHHHHHHHT----TC-S
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCC-----CC--cccccccccccCCcce-ecccC--HHHHHHHHHhc----CC-C
Confidence 4677899999999999999999986421 10 001112 234333332 45555 3443 22 221 12 4
Q ss_pred cEEEeeeeeecCCCcccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
|+||||++|...+.......|...|=+-.+. ++++++-.+++
T Consensus 274 rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af--~d~~dlm~l~E 315 (529)
T 4ex5_A 274 RVFEINRNFRNEGVSPRHNPEFTMMEFYAAY--TDYRWLMDFTE 315 (529)
T ss_dssp EEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHH
T ss_pred cEEEeehheecCCCCCCcccHhHhhhhhhhc--CCHHHHHHHHH
Confidence 8999999997654322222234444443333 35666544443
No 74
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=45.20 E-value=17 Score=38.74 Aligned_cols=74 Identities=7% Similarity=0.009 Sum_probs=42.3
Q ss_pred hHHHhhhHHHH----HHHHHHccCCCCCccEEEeeeeeecCCCcccC---cccccEEEE-EEecCCCC---HH----HHH
Q 009703 449 EVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAA-LYCGANSG---FE----VIY 513 (528)
Q Consensus 449 ~~lR~SLlpgL----L~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~-~~~~~~~~---f~----~i~ 513 (528)
-+||+...+|+ -+.+..+ ++.+|++++++|.+|..+...-.| .|+....-+ +++..+.. +. ..+
T Consensus 183 ~~LRPE~t~~i~~~~~~~~~sy-~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 183 AYLRPETAQGIFVNFKNVLDAT-SRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEECSSSHHHHHHTHHHHHHHH-TCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred eeecccchhHHHHHHHHHHHhc-CCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHH
Confidence 36888877887 3444443 246899999999998654232223 234333333 33433221 22 345
Q ss_pred HHHHhcCCee
Q 009703 514 LTVLTKNFTC 523 (528)
Q Consensus 514 ~~l~~~~~~~ 523 (528)
.+++.||+++
T Consensus 262 ~i~~~LGl~~ 271 (505)
T 1ati_A 262 KWWQEMGLSR 271 (505)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCCe
Confidence 5567889863
No 75
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=41.89 E-value=83 Score=34.03 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCccee-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
++.+.+|+.|...||.||-|-.|++..- + + +...++ .|-...++-.||+| |.|.+-+.- ..+. -|+
T Consensus 149 ~i~~~iR~fl~~~gF~EVeTPiL~~s~~--e--G----Ar~F~v~~~~~~~~~y~L~qS--PQl~kq~Lm--v~G~-~rv 215 (580)
T 1l0w_A 149 RVIKAIWDFLDREGFVQVETPFLTKSTP--E--G----ARDFLVPYRHEPGLFYALPQS--PQLFKQMLM--VAGL-DRY 215 (580)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS--S--S----SCCCEEECTTSTTEEEECCSC--SHHHHHHHH--HTTC-SEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC--C--C----CCCccccccccCCceeECccC--HHHHHHHHH--Hhcc-CCe
Confidence 4677899999999999999999995321 0 1 111122 22111223246654 555444321 1122 389
Q ss_pred EEeeeeeecCCCc-ccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 476 YEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 476 FEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
||||++|...+.. ...+ |...|=+=++. .+++++-.+++
T Consensus 216 fqI~~~FR~E~~~~~r~p-EFT~lE~e~af--~d~~dvm~~~E 255 (580)
T 1l0w_A 216 FQIARCFRDEDLRADRQP-DFTQLDLEMSF--VEVEDVLELNE 255 (580)
T ss_dssp EEEEEEECCCCCCSSCCS-EEEEEEEEEES--CCHHHHHHHHH
T ss_pred EEEeceeeCCCCCCCcCC-CccceeeeecC--CCHHHHHHHHH
Confidence 9999999754431 1222 44444433333 34666555544
No 76
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=41.00 E-value=65 Score=34.06 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHH-HHHHHccCCCCCcc
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPIK 474 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~~~~ 474 (528)
++.+.+|+.|...||.||-|-.|++..- +.+.+.. +.. ....-+||+| |.|. +.+.. ...-|
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~--------~~ga~~f~~~~--~~~~~~L~~S--pql~~k~l~~----~g~~r 246 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPS--------EGGSSVFEVTY--FKGKAYLAQS--PQFNKQQLIV----ADFER 246 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS--------SSSSCCCEEEE--TTEEEEECSC--THHHHHHHHH----TTCCE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecC--------CCCcccceecc--CCccEEcccC--hHHHHHHHHh----cCCCc
Confidence 4677789999999999999999987431 0011223 321 1223356633 2221 22211 12369
Q ss_pred EEEeeeeeecCC
Q 009703 475 IYEVGDVVLLDE 486 (528)
Q Consensus 475 lFEiG~V~~~~~ 486 (528)
+|+||.+|..+.
T Consensus 247 vy~ig~~FR~E~ 258 (487)
T 1eov_A 247 VYEIGPVFRAEN 258 (487)
T ss_dssp EEEEEEEECCCC
T ss_pred eEEEeccEecCC
Confidence 999999997654
No 77
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=39.14 E-value=98 Score=33.50 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCccee-eCCcccchhHHHhhhHHHHHHHHHHccCCCCCccE
Q 009703 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (528)
Q Consensus 397 ~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~vl-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (528)
++.+.+|+.|...||.||-|-.|++..- + + +...++ .|-...++-.||+| |.|.+-+.- ..+. =|+
T Consensus 143 ~i~~~iR~fl~~~gFlEVeTPiL~~s~~--e--G----Ar~F~v~~~~~~~~~y~L~qS--PQl~kq~Lm--v~G~-~rv 209 (585)
T 1c0a_A 143 KITSLVRRFMDDHGFLDIETPMLTKATP--E--G----ARDYLVPSRVHKGKFYALPQS--PQLFKQLLM--MSGF-DRY 209 (585)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS--S--S----SCCCEEECSSSTTCEEECCSC--SHHHHHHHH--HTTC-CEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC--C--C----CccceecccccCCceEeCccC--HHHHHHHHH--hcCC-Cce
Confidence 4678899999999999999999995321 0 1 112122 22112223346654 455443221 1222 389
Q ss_pred EEeeeeeecCCCc-ccCcccccEEEEEEecCCCCHHHHHHHHH
Q 009703 476 YEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFEVIYLTVL 517 (528)
Q Consensus 476 FEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l~ 517 (528)
||||++|...+.. ...+ |...|=+=++. ++++++-.+++
T Consensus 210 fqI~~~FR~E~~~t~r~p-EFT~lE~e~af--~d~~dvm~~~E 249 (585)
T 1c0a_A 210 YQIVKCFRDEDLRADRQP-EFTQIDVETSF--MTAPQVREVME 249 (585)
T ss_dssp EEEEEEECCCCCBTTBCS-EEEEEEEEEES--CCHHHHHHHHH
T ss_pred EEEeceeecCCCCCCcCc-ccceeeeeecC--CCHHHHHHHHH
Confidence 9999999754431 1222 34444433333 34666554443
No 78
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=37.39 E-value=17 Score=40.38 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.7
Q ss_pred cchhHHHhhhHHHH----HHHHHHccCCCCCccEEEeeeeeecC
Q 009703 446 SDFEVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLD 485 (528)
Q Consensus 446 ~e~~~lR~SLlpgL----L~~~~~N~~~~~~~~lFEiG~V~~~~ 485 (528)
..--+|||-..+|+ -+.+..| .+.+|+++++||.+|.-.
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~-~~~LP~~~aqiG~~fRnE 279 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFN-QGKLPFAAAQIGNSFRNE 279 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHT-TTCSCEEEEEEEEEECCC
T ss_pred CcceeeccccchHHHHHHHHHHHHh-CcCCCEEEEeecceecCC
Confidence 34556788888888 6777777 347899999999999644
No 79
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=31.03 E-value=36 Score=34.37 Aligned_cols=129 Identities=8% Similarity=-0.069 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccC-CCCCcce-eeCC-----------------------cccchhH
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNP-----------------------RTSDFEV 450 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~-~~~~~~v-l~NP-----------------------~s~e~~~ 450 (528)
+.+.+.+|+ ....||+|+.+-.+++.+... ..+-. .-.+... +... +..+--+
T Consensus 68 ~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e-~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~ 145 (346)
T 3mf2_A 68 ERLAALITS-HREAGTEALRFPPVMSRAQLE-KSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV 145 (346)
T ss_dssp HHHHHHHHH-TCCTTCEEEECCSEEEHHHHH-HTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEE
T ss_pred HHHHHHHHh-hHhcCCeEEECCCccCHHHHH-hcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEE
Confidence 345666777 778899999999999988633 22111 0012222 3211 0111236
Q ss_pred HHhhhHHHHHHHHHHc-cCCCCCccEEEeeeeeecCCCc-ccCcccccEEEEEEecC-CCC-------HHHHHHHHHhcC
Q 009703 451 VRTTLMPGILKTIGHN-KDHPKPIKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGA-NSG-------FEVIYLTVLTKN 520 (528)
Q Consensus 451 lR~SLlpgLL~~~~~N-~~~~~~~~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~-~~~-------f~~i~~~l~~~~ 520 (528)
|.++-=|.+....+.- .....|+++.+.|.+|....+. --..++..+.=++..+. +.. ...+..+++.||
T Consensus 146 LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~Lg 225 (346)
T 3mf2_A 146 LSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLG 225 (346)
T ss_dssp ECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7788888888888752 4434589999999999866531 11123444454444333 222 234667788999
Q ss_pred Ceeeee
Q 009703 521 FTCELN 526 (528)
Q Consensus 521 ~~~~~~ 526 (528)
+.+..+
T Consensus 226 Lpyrv~ 231 (346)
T 3mf2_A 226 LTFRVD 231 (346)
T ss_dssp CCCEEE
T ss_pred CCEEEE
Confidence 987654
No 80
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=30.14 E-value=1e+02 Score=32.26 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCceeecccccCh
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSS 422 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~ 422 (528)
.++.+.+|+.|...||.||-|-.|++.
T Consensus 160 s~i~~~iR~ff~~~gF~EVeTPiL~~s 186 (456)
T 3m4p_A 160 SEIQWYFRKYYHDNHFTEIQPPTIVKT 186 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEC-
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeecC
Confidence 356788999999999999999999764
No 81
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=28.93 E-value=98 Score=32.21 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHCCCceeecccccChHHHHHHhccCCCCCcce-eeCCcccchhHHHhhhHHHHHHHHHHccCCCCCcc
Q 009703 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (528)
Q Consensus 396 ~~~~~~lR~~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~~~~~~v-l~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (528)
.++.+.+|+.|...||.||-|-.|++..- +.+.+.. +... ...-+||+| |.|-.-.. ...+. -|
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~--------eg~~~~f~~~~~--~~~~yL~~S--pql~~q~l--~~~g~-~r 205 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATAT--------EGGTELFPMKYF--EEDAFLAQS--PQLYKQIM--MASGL-DR 205 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS--------SCSSSCCEEEET--TEEEEECSC--SHHHHHHG--GGTTC-CE
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCC--------CCCccceeEeeC--CccEEEecC--hHHHHHHH--HhcCC-Cc
Confidence 35678899999999999999999987531 0011222 3211 111245444 33332211 11222 59
Q ss_pred EEEeeeeeecCCCc-ccCcccccEEEEEEecCCCCHHHHHHHH
Q 009703 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFEVIYLTV 516 (528)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~~~~~~f~~i~~~l 516 (528)
+||||++|..++.. .....|...|=+-.+.. .+++++-.++
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~-~~~~d~m~~~ 247 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI-EDEEEVMSFL 247 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESC-SSHHHHHHHH
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeeccC-ccHHHHHHHH
Confidence 99999999755431 11222444554433332 2255544443
No 82
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex, circadia protein; NMR {Thermosynechococcus elongatus} PDB: 1sv1_C
Probab=28.87 E-value=22 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.9
Q ss_pred ecCCcccCCceeeecCCc
Q 009703 234 SLPPIINGAHSAITLKTK 251 (528)
Q Consensus 234 slagIigg~~s~It~~T~ 251 (528)
++||||.|.-|+|+.+-+
T Consensus 1 amagiisgtptrisvdek 18 (34)
T 1suy_C 1 AMAGIISGTPTRISVDEK 18 (34)
T ss_dssp CCSCCCCCCSSCSCCCTT
T ss_pred CccccccCCCceEeechh
Confidence 589999999998887654
No 83
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=27.95 E-value=85 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHhcCCeEEE
Q 009703 323 SLEAEEVTSLLNRMQLHAER 342 (528)
Q Consensus 323 ~l~~~~i~~~L~~lg~~~~~ 342 (528)
.++..|++++|++.||....
T Consensus 4 p~~~~elik~L~~~G~~~~r 23 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERM 23 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHCCCEEeC
Confidence 46789999999999998654
No 84
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=24.54 E-value=19 Score=38.50 Aligned_cols=89 Identities=11% Similarity=0.108 Sum_probs=58.1
Q ss_pred HHHHHHHHH-HHHHCCCceeecccccChHHHHHHhccCC-CCCcce-eeCC-----------------------------
Q 009703 396 NEFSDLMRL-EIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNP----------------------------- 443 (528)
Q Consensus 396 ~~~~~~lR~-~l~~~Gf~Ev~t~sL~s~~~~~~~~~~~~-~~~~~v-l~NP----------------------------- 443 (528)
+.+.+.+++ .+...||+|+.+-.|.+.+.... .+..+ -.+..+ +...
T Consensus 235 ~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~-SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~ 313 (522)
T 2cja_A 235 RTFEKIVLEELLEPLGYREMIFPKLVTWEVWMK-SGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK 313 (522)
T ss_dssp HHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHH-HTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCCcccHHHHhh-cCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccc
Confidence 456777775 47788999999999998886333 22211 113344 5311
Q ss_pred cccchhHHHhhhHHHHHHHHHHccC--CCCCccEEE-eeeeeecC
Q 009703 444 RTSDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLD 485 (528)
Q Consensus 444 ~s~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFE-iG~V~~~~ 485 (528)
+..+--+|||+--+++....+.+.. +.+|++++. +|.+|...
T Consensus 314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E 358 (522)
T 2cja_A 314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE 358 (522)
T ss_dssp BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC
T ss_pred cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC
Confidence 1223447888888888777765433 347999999 99999765
No 85
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=23.06 E-value=68 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=16.9
Q ss_pred CcceEEEeCCCCeeecCCcccC
Q 009703 220 PLYPVLYDQNRTVLSLPPIING 241 (528)
Q Consensus 220 ~~~pVI~D~~g~vlslagIigg 241 (528)
++.-|..|++| +++-.|.||+
T Consensus 5 ~RVrvfvd~~g-~V~~~P~iG~ 25 (26)
T 1hym_B 5 NRVRIWVNKRG-LVVSPPRIGX 25 (26)
T ss_dssp TEEEEEEETTT-EEECCSBCC-
T ss_pred CEEEEEECCCC-cEEECCcccC
Confidence 45678999998 7899999986
No 86
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=20.38 E-value=1.1e+02 Score=25.26 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.0
Q ss_pred cceEEEeCCCCeeecCCcccCCcee
Q 009703 221 LYPVLYDQNRTVLSLPPIINGAHSA 245 (528)
Q Consensus 221 ~~pVI~D~~g~vlslagIigg~~s~ 245 (528)
.+++|+|++|++|.-|++.-+++++
T Consensus 50 ~~lrI~D~~G~vi~~~~~~a~~~~~ 74 (106)
T 3fn2_A 50 GYVRITDKDGQVITYEDGSVQDKTV 74 (106)
T ss_dssp CEEEEECTTSCBCSCCCSCSTTEEE
T ss_pred CcEEEEcCCCCEEecCCCCcCccee
Confidence 4799999999998888887655543
Done!