RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 009703
         (528 letters)



>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
           {Thermus thermophilus [TaxId: 274]}
          Length = 75

 Score = 61.8 bits (150), Expect = 7e-13
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 309 MEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCD 368
           +     Y N  +G S    E  ++L R+    E            V  P  R D+    D
Sbjct: 5   IPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT-----YRVTPPSHRLDLRLEED 59

Query: 369 VMEDVAIAYGYNNIP 383
           ++E+VA   GY  IP
Sbjct: 60  LVEEVARIQGYETIP 74


>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
           subunit, PheT, central domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 207

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 382 IPKRKPASVKP--LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV 439
           +P   PA       A       +R  ++  GF EV T+     ++       + D    +
Sbjct: 2   LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLDPPRLL 58

Query: 440 VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP--IKIYEVGDVVLLDEKKDVGASCRRR 497
           + NP   +   +RT L PG+++ +  N D  +P    ++EVG V    E+  +       
Sbjct: 59  LLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGE 118

Query: 498 LAALYCGAN 506
              L     
Sbjct: 119 GVGLPWAKE 127


>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 485

 Score = 33.1 bits (75), Expect = 0.088
 Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)

Query: 109 QMHVKPETSSIRPYVVCAVLRDISFD--EASYNSFIDLQDKLHQNICRRRTLVAIGTHDL 166
           +     E        V  +              +F D + +   +      +    THDL
Sbjct: 327 KNPFIAEDLGFITDEVRYLRETFKIPGSRVIEFAFYDKESEHLPHNVEENNVYYTSTHDL 386

Query: 167 DTLQG 171
             ++G
Sbjct: 387 PPIRG 391


>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
           UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
          Length = 265

 Score = 29.9 bits (66), Expect = 0.79
 Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---RQTDESTAVVGNPRTSDFEVVRT 453
               +    IA      V+   +     I+  L    R  DE  A V N  T    V+ T
Sbjct: 159 VPDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLET 218

Query: 454 TLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKD-VGASCRRRLAA 500
           TL     +          P  +  VG+VV L    D +GA   R+LAA
Sbjct: 219 TL--ARAEADVAAAGLEPPAIVV-VGEVVRLRAALDWIGALDGRKLAA 263


>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
           {Bacillus halodurans [TaxId: 86665]}
          Length = 212

 Score = 28.9 bits (64), Expect = 1.1
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 124 VCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPS-- 181
              ++  ISF      S    +  + Q+  R   L AIG        G        P   
Sbjct: 92  TMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELP 151

Query: 182 HINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214
               + +++ R   +  +  FY+   KLK  ++
Sbjct: 152 IRETMTVEEYRHGKSTAINHFYEKLFKLKDLMN 184


>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
           271]}
          Length = 500

 Score = 28.9 bits (64), Expect = 1.9
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 104 KDSMLQMHVKPETSSIRPYVVCAVLRDI----------SFDEASYNSFIDLQDKLHQNIC 153
           ++   ++ V  E   +    V A+              +FD+   N F+      H    
Sbjct: 329 QEVFGEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDDGMENPFLP-----HNYPA 383

Query: 154 RRRTLVAIGTHDLDTLQG 171
             R +V  GTHD DT  G
Sbjct: 384 HGRVVVYTGTHDNDTTLG 401


>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
           vulgaris [TaxId: 2026]}
          Length = 323

 Score = 28.3 bits (62), Expect = 2.3
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 28  CFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLL 76
            F F  E+   +        ++ +  E   N E V+Y  E     Y ++
Sbjct: 271 IFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVI 319


>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
           tuberosum) [TaxId: 4113]}
          Length = 523

 Score = 27.8 bits (61), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 154 RRRTLVAIGTHDLDTLQGPFTYEALPPSHINFV 186
            +  +V  GTHD DT++G   ++ LP    + V
Sbjct: 409 EQNQVVYTGTHDNDTIRG--WWDTLPQEEKSNV 439


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,943,860
Number of extensions: 92496
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 12
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)