Query 009705
Match_columns 528
No_of_seqs 298 out of 913
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o36_A Transcription intermedi 99.7 1.1E-18 3.9E-23 164.3 2.3 124 269-402 3-127 (184)
2 3u5n_A E3 ubiquitin-protein li 99.7 1.5E-18 5.2E-23 166.5 2.2 120 270-402 7-127 (207)
3 2ro1_A Transcription intermedi 99.6 2.3E-17 7.8E-22 157.1 2.3 117 270-402 2-121 (189)
4 2ysm_A Myeloid/lymphoid or mix 99.5 2E-14 6.8E-19 125.4 6.8 86 226-321 20-105 (111)
5 2kwj_A Zinc finger protein DPF 99.5 2.3E-15 8E-20 132.6 0.9 92 223-321 18-109 (114)
6 3v43_A Histone acetyltransfera 99.5 7.8E-15 2.7E-19 128.8 2.3 90 223-319 21-111 (112)
7 2l7p_A Histone-lysine N-methyl 99.4 5.4E-14 1.8E-18 122.0 4.0 58 418-490 23-84 (100)
8 3asl_A E3 ubiquitin-protein li 99.4 1.1E-13 3.9E-18 112.6 5.0 58 260-319 10-68 (70)
9 3shb_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 114.6 4.6 57 261-319 19-76 (77)
10 1f62_A Transcription factor WS 99.4 1.5E-13 5.1E-18 104.6 3.2 49 272-320 2-50 (51)
11 2e6s_A E3 ubiquitin-protein li 99.4 2.9E-13 1E-17 112.2 5.0 57 261-319 19-76 (77)
12 1fp0_A KAP-1 corepressor; PHD 99.4 5.7E-13 2E-17 113.3 5.9 50 269-321 24-73 (88)
13 1mm2_A MI2-beta; PHD, zinc fin 99.4 3.9E-13 1.3E-17 106.5 4.5 49 270-321 9-57 (61)
14 2yql_A PHD finger protein 21A; 99.3 5.9E-13 2E-17 103.5 4.4 47 270-319 9-55 (56)
15 1xwh_A Autoimmune regulator; P 99.3 4.6E-13 1.6E-17 107.5 3.7 50 269-321 7-56 (66)
16 2e6r_A Jumonji/ARID domain-con 99.3 5.6E-13 1.9E-17 113.8 4.3 60 261-321 8-67 (92)
17 1wev_A Riken cDNA 1110020M19; 99.3 4.9E-13 1.7E-17 113.2 3.8 56 268-323 14-75 (88)
18 2lri_C Autoimmune regulator; Z 99.3 5.7E-13 2E-17 107.5 3.3 48 270-320 12-59 (66)
19 2puy_A PHD finger protein 21A; 99.3 6.3E-13 2.2E-17 104.6 3.2 49 270-321 5-53 (60)
20 2l5u_A Chromodomain-helicase-D 99.3 2E-12 6.7E-17 102.4 4.1 48 270-320 11-58 (61)
21 2yt5_A Metal-response element- 99.3 1.6E-12 5.4E-17 103.6 2.8 53 269-321 5-62 (66)
22 3ask_A E3 ubiquitin-protein li 99.2 6E-12 2E-16 123.2 4.7 58 260-319 166-224 (226)
23 2e61_A Zinc finger CW-type PWW 99.2 5.2E-12 1.8E-16 102.9 3.5 53 417-482 12-67 (69)
24 2ku3_A Bromodomain-containing 99.2 7.6E-12 2.6E-16 102.3 2.5 50 270-321 16-67 (71)
25 2l43_A N-teminal domain from h 99.1 1.5E-11 5.2E-16 104.2 2.2 51 269-321 24-76 (88)
26 2ri7_A Nucleosome-remodeling f 99.0 1.8E-11 6.3E-16 113.8 -3.3 108 270-401 8-118 (174)
27 2k16_A Transcription initiatio 98.9 3.9E-10 1.3E-14 92.0 3.6 53 270-322 18-70 (75)
28 4gne_A Histone-lysine N-methyl 98.8 2.6E-09 9.1E-14 93.7 4.0 47 269-320 14-62 (107)
29 2lbm_A Transcriptional regulat 98.7 1.8E-09 6.3E-14 99.0 1.8 48 270-320 63-117 (142)
30 2ysm_A Myeloid/lymphoid or mix 98.6 1.3E-08 4.4E-13 88.6 4.0 50 269-318 6-55 (111)
31 2lv9_A Histone-lysine N-methyl 98.6 2.9E-08 1E-12 85.4 4.2 49 271-321 29-77 (98)
32 1wen_A Inhibitor of growth fam 98.6 4E-08 1.4E-12 80.2 4.7 48 270-321 16-66 (71)
33 2vnf_A ING 4, P29ING4, inhibit 98.6 2.7E-08 9.3E-13 78.5 3.1 47 270-320 10-59 (60)
34 3c6w_A P28ING5, inhibitor of g 98.5 4E-08 1.4E-12 77.4 3.2 47 270-320 9-58 (59)
35 3ql9_A Transcriptional regulat 98.4 1.9E-08 6.5E-13 91.0 -0.5 49 270-321 57-112 (129)
36 2g6q_A Inhibitor of growth pro 98.4 1.2E-07 4E-12 75.5 3.1 47 270-320 11-60 (62)
37 1weu_A Inhibitor of growth fam 98.4 2E-07 6.9E-12 79.6 4.5 48 270-321 36-86 (91)
38 2jmi_A Protein YNG1, ING1 homo 98.4 1.1E-07 3.9E-12 81.0 2.8 47 270-320 26-76 (90)
39 4gne_A Histone-lysine N-methyl 98.2 1.3E-06 4.5E-11 76.6 5.0 74 224-314 23-98 (107)
40 1x4i_A Inhibitor of growth pro 98.1 1.3E-06 4.4E-11 71.1 2.5 47 271-321 7-56 (70)
41 2kwj_A Zinc finger protein DPF 98.0 1.1E-06 3.8E-11 77.1 0.6 48 271-318 2-59 (114)
42 3o70_A PHD finger protein 13; 97.8 1.3E-05 4.5E-10 64.7 4.0 49 270-320 19-67 (68)
43 3v43_A Histone acetyltransfera 97.8 3.8E-06 1.3E-10 73.4 0.0 50 270-319 5-63 (112)
44 1we9_A PHD finger family prote 97.7 1.4E-05 4.7E-10 63.0 3.0 52 270-321 6-59 (64)
45 2xb1_A Pygopus homolog 2, B-ce 97.6 2E-05 6.7E-10 68.6 2.4 51 271-323 4-64 (105)
46 1wew_A DNA-binding family prot 97.6 3.3E-05 1.1E-09 63.6 3.5 49 270-321 16-73 (78)
47 1wee_A PHD finger family prote 97.6 3.3E-05 1.1E-09 62.5 3.2 51 270-321 16-67 (72)
48 1wem_A Death associated transc 97.5 1.5E-05 5.3E-10 65.0 0.7 49 270-321 16-71 (76)
49 1wep_A PHF8; structural genomi 97.5 2.8E-05 9.5E-10 64.0 2.2 51 271-322 13-65 (79)
50 2rsd_A E3 SUMO-protein ligase 97.5 5.3E-05 1.8E-09 60.8 3.3 49 270-321 10-66 (68)
51 2vpb_A Hpygo1, pygopus homolog 97.4 4.1E-05 1.4E-09 61.4 1.6 47 270-318 8-64 (65)
52 3o7a_A PHD finger protein 13 v 97.3 0.00015 5.3E-09 55.1 3.8 44 275-319 8-51 (52)
53 1wil_A KIAA1045 protein; ring 97.1 9.8E-05 3.4E-09 62.3 0.7 51 270-321 15-77 (89)
54 3kqi_A GRC5, PHD finger protei 97.1 0.00018 6.2E-09 58.6 2.1 49 271-322 11-63 (75)
55 2kgg_A Histone demethylase jar 96.8 0.00023 7.8E-09 54.2 0.2 45 272-318 4-52 (52)
56 3kv5_D JMJC domain-containing 96.4 0.0012 4.2E-08 71.1 2.5 51 271-324 38-92 (488)
57 3lqh_A Histone-lysine N-methyl 96.2 0.0013 4.4E-08 62.5 1.7 52 271-322 3-65 (183)
58 4bbq_A Lysine-specific demethy 95.9 0.0072 2.4E-07 52.4 4.7 40 282-321 72-115 (117)
59 3pur_A Lysine-specific demethy 94.8 0.011 3.9E-07 64.1 2.6 39 283-323 56-97 (528)
60 3kv4_A PHD finger protein 8; e 93.5 0.011 3.8E-07 63.1 -0.6 47 275-323 9-59 (447)
61 2yyn_A Transcription intermedi 93.3 0.0069 2.4E-07 54.4 -2.3 50 349-401 15-65 (135)
62 3g0l_A Hwalp4, bromodomain adj 90.3 0.034 1.2E-06 48.3 -1.2 50 350-401 9-59 (117)
63 3a1b_A DNA (cytosine-5)-methyl 88.5 0.1 3.6E-06 48.6 0.6 49 270-321 79-135 (159)
64 2e6r_A Jumonji/ARID domain-con 86.7 0.47 1.6E-05 40.0 3.5 48 213-269 16-63 (92)
65 2d9e_A Peregrin; four-helix bu 86.6 0.074 2.5E-06 46.7 -1.6 50 350-401 4-53 (121)
66 1mm2_A MI2-beta; PHD, zinc fin 85.1 0.89 3E-05 35.4 4.1 37 224-269 17-53 (61)
67 2pv0_B DNA (cytosine-5)-methyl 84.9 0.23 7.7E-06 52.2 0.8 49 270-321 93-149 (386)
68 2lri_C Autoimmune regulator; Z 84.4 0.44 1.5E-05 38.0 2.1 38 223-269 19-56 (66)
69 1fp0_A KAP-1 corepressor; PHD 83.9 1 3.5E-05 38.1 4.3 37 223-268 32-68 (88)
70 3fkm_X Signaling protein; brom 83.8 0.16 5.6E-06 47.0 -0.7 49 353-401 20-69 (166)
71 2ku7_A MLL1 PHD3-CYP33 RRM chi 83.5 0.28 9.6E-06 42.0 0.7 38 284-321 1-45 (140)
72 2e6s_A E3 ubiquitin-protein li 82.9 0.74 2.5E-05 37.7 2.9 52 209-269 20-74 (77)
73 3hme_A Bromodomain-containing 82.5 0.13 4.5E-06 45.2 -1.8 49 351-401 11-59 (123)
74 3nxb_A CAT eye syndrome critic 81.7 0.11 3.6E-06 45.1 -2.7 40 360-401 23-62 (116)
75 3u5n_A E3 ubiquitin-protein li 80.3 0.85 2.9E-05 43.2 2.8 37 223-268 14-50 (207)
76 4alg_A Bromodomain-containing 80.2 0.19 6.6E-06 46.0 -1.7 41 361-401 40-80 (154)
77 3rcw_A Bromodomain-containing 79.5 0.19 6.7E-06 44.6 -1.9 49 351-401 11-59 (135)
78 2i7k_A Bromodomain-containing 79.4 0.1 3.4E-06 45.8 -3.7 40 360-401 15-54 (117)
79 3asl_A E3 ubiquitin-protein li 79.2 0.97 3.3E-05 36.2 2.4 52 209-269 12-66 (70)
80 2oss_A HUNK1 protein, bromodom 79.1 0.28 9.6E-06 43.4 -1.0 41 361-401 29-69 (127)
81 2ro1_A Transcription intermedi 79.0 1.3 4.3E-05 41.8 3.5 38 223-269 9-46 (189)
82 3q2e_A Bromodomain and WD repe 78.8 0.15 5E-06 44.8 -2.8 39 361-401 18-56 (123)
83 3shb_A E3 ubiquitin-protein li 78.3 1.1 3.8E-05 36.7 2.5 50 211-269 22-74 (77)
84 1f62_A Transcription factor WS 78.0 0.81 2.8E-05 33.9 1.4 43 218-269 5-47 (51)
85 3jvl_A Bromodomain-containing 76.2 0.1 3.6E-06 45.4 -4.5 50 352-401 7-60 (120)
86 1xwh_A Autoimmune regulator; P 75.9 1.2 4E-05 35.1 1.9 37 224-269 16-52 (66)
87 3d7c_A General control of amin 75.4 0.19 6.4E-06 43.3 -3.1 39 361-401 15-53 (112)
88 1e6i_A Transcriptional activat 75.2 0.21 7E-06 43.8 -2.9 39 361-401 21-59 (121)
89 3rsn_A SET1/ASH2 histone methy 74.6 2.3 7.8E-05 40.3 3.9 45 276-320 10-59 (177)
90 3mb3_A PH-interacting protein; 73.4 0.23 7.9E-06 44.1 -3.1 39 361-401 29-67 (135)
91 2ecl_A Ring-box protein 2; RNF 72.5 2.2 7.5E-05 34.2 2.8 31 287-321 44-74 (81)
92 2puy_A PHD finger protein 21A; 71.8 1.7 5.8E-05 33.4 1.9 37 224-269 13-49 (60)
93 2l5u_A Chromodomain-helicase-D 71.8 1.7 5.9E-05 33.7 1.9 37 224-269 19-55 (61)
94 2yql_A PHD finger protein 21A; 71.7 1.8 6.2E-05 32.8 2.0 36 225-269 18-53 (56)
95 3ask_A E3 ubiquitin-protein li 71.6 2 6.8E-05 42.1 2.8 50 211-269 170-222 (226)
96 3o36_A Transcription intermedi 71.0 2.3 7.8E-05 39.4 2.9 37 223-268 11-47 (184)
97 4ap4_A E3 ubiquitin ligase RNF 70.1 0.29 1E-05 41.6 -3.1 89 227-321 25-123 (133)
98 3uv4_A Second bromodomain of h 68.9 0.75 2.6E-05 42.3 -0.9 36 365-402 42-77 (158)
99 1iym_A EL5; ring-H2 finger, ub 67.5 2.1 7.3E-05 31.1 1.6 47 270-320 5-52 (55)
100 3mb4_A Protein polybromo-1; PB 66.5 0.51 1.7E-05 41.3 -2.4 33 367-401 35-67 (124)
101 2l43_A N-teminal domain from h 66.3 2.4 8.2E-05 35.4 1.8 35 224-269 38-72 (88)
102 2ouo_A HUNK1 protein, bromodom 65.7 0.45 1.5E-05 42.2 -2.9 48 354-401 22-73 (130)
103 2kiz_A E3 ubiquitin-protein li 65.5 2 7E-05 32.7 1.2 48 270-321 14-61 (69)
104 3dai_A ATPase family AAA domai 65.5 0.85 2.9E-05 40.3 -1.2 38 362-401 19-56 (130)
105 1x4j_A Ring finger protein 38; 65.5 1 3.5E-05 35.2 -0.6 47 270-320 23-69 (75)
106 2dat_A Possible global transcr 65.2 0.72 2.5E-05 40.4 -1.7 32 368-401 34-65 (123)
107 4gut_A Lysine-specific histone 64.3 0.94 3.2E-05 51.1 -1.4 52 422-484 92-150 (776)
108 1vyx_A ORF K3, K3RING; zinc-bi 64.2 0.89 3E-05 35.2 -1.1 50 270-321 6-57 (60)
109 3k2j_A Protein polybromo-1; PB 63.9 0.67 2.3E-05 41.2 -2.2 33 367-401 37-69 (130)
110 2d8s_A Cellular modulator of i 63.7 1.3 4.6E-05 36.1 -0.2 50 270-321 15-68 (80)
111 3ljw_A Protein polybromo-1; al 63.3 0.69 2.3E-05 40.3 -2.2 33 367-401 28-60 (120)
112 3mqm_A Probable histone-lysine 63.1 0.82 2.8E-05 40.0 -1.7 33 367-401 29-61 (126)
113 2dkw_A Hypothetical protein KI 62.0 1.1 3.6E-05 40.0 -1.2 34 361-401 20-53 (131)
114 2l0b_A E3 ubiquitin-protein li 62.0 1.8 6E-05 35.5 0.2 47 270-320 40-86 (91)
115 2grc_A Probable global transcr 61.0 0.75 2.6E-05 40.6 -2.4 33 367-401 32-64 (129)
116 4bbq_A Lysine-specific demethy 60.5 1.9 6.4E-05 37.0 0.1 36 271-320 8-43 (117)
117 2ect_A Ring finger protein 126 60.1 3.3 0.00011 32.3 1.5 48 270-321 15-62 (78)
118 3p1f_A CREB-binding protein; s 58.6 0.84 2.9E-05 39.5 -2.5 41 361-401 19-60 (119)
119 1v87_A Deltex protein 2; ring- 58.6 2.2 7.5E-05 35.8 0.2 34 288-321 58-92 (114)
120 2ep4_A Ring finger protein 24; 56.6 1.9 6.3E-05 33.4 -0.6 48 270-321 15-62 (74)
121 1wev_A Riken cDNA 1110020M19; 56.4 3.4 0.00012 34.4 1.0 36 225-269 30-69 (88)
122 2ku3_A Bromodomain-containing 55.9 4.3 0.00015 32.6 1.5 35 224-269 29-63 (71)
123 2ecm_A Ring finger and CHY zin 55.8 2.5 8.7E-05 30.5 0.1 47 270-320 5-52 (55)
124 3iu5_A Protein polybromo-1; PB 55.4 0.74 2.5E-05 39.8 -3.3 32 368-401 26-57 (116)
125 3uv5_A Transcription initiatio 54.9 1 3.6E-05 44.2 -2.8 39 361-401 22-60 (265)
126 2ct0_A Non-SMC element 1 homol 51.9 7.8 0.00027 31.4 2.5 47 270-320 15-61 (74)
127 3aad_A Transcription initiatio 49.3 1.6 5.3E-05 43.7 -2.6 39 361-401 55-93 (292)
128 3tlp_A Protein polybromo-1; PB 49.3 1.5 5.3E-05 39.4 -2.4 33 367-401 45-77 (150)
129 2lq6_A Bromodomain-containing 49.1 8.9 0.0003 31.9 2.4 36 258-301 10-49 (87)
130 3uv5_A Transcription initiatio 45.5 3.4 0.00011 40.6 -0.9 36 365-402 149-184 (265)
131 3aad_A Transcription initiatio 44.5 3.8 0.00013 41.0 -0.7 35 365-401 182-216 (292)
132 2k16_A Transcription initiatio 43.1 10 0.00035 30.0 1.8 38 223-269 28-65 (75)
133 4a0k_B E3 ubiquitin-protein li 41.8 5.6 0.00019 34.9 0.1 28 289-320 82-109 (117)
134 2r10_A Chromatin structure-rem 41.8 3.4 0.00011 42.6 -1.6 33 367-401 227-259 (361)
135 2yt5_A Metal-response element- 40.5 10 0.00036 29.2 1.5 36 225-269 20-58 (66)
136 3k1l_B Fancl; UBC, ring, RWD, 40.5 7.8 0.00027 40.5 0.9 52 270-321 308-371 (381)
137 2ect_A Ring finger protein 126 40.2 12 0.00042 29.0 1.8 31 215-245 17-47 (78)
138 2r0y_A Chromatin structure-rem 39.5 3 0.0001 42.2 -2.3 34 367-402 177-210 (311)
139 3dpl_R Ring-box protein 1; ubi 39.3 6.9 0.00023 33.5 0.2 31 287-321 69-99 (106)
140 2ri7_A Nucleosome-remodeling f 38.0 11 0.00037 34.2 1.4 62 419-496 19-86 (174)
141 2d8t_A Dactylidin, ring finger 37.4 13 0.00044 28.5 1.5 45 270-321 15-59 (71)
142 1x4j_A Ring finger protein 38; 35.4 9.1 0.00031 29.6 0.4 33 213-245 23-55 (75)
143 2ecy_A TNF receptor-associated 35.0 8.8 0.0003 28.9 0.2 45 270-320 15-59 (66)
144 2egp_A Tripartite motif-contai 34.3 22 0.00075 27.3 2.5 49 270-321 12-63 (79)
145 2ysl_A Tripartite motif-contai 34.1 9.7 0.00033 29.0 0.3 48 270-321 20-67 (73)
146 3l11_A E3 ubiquitin-protein li 33.0 19 0.00065 30.1 2.0 47 270-322 15-61 (115)
147 1weq_A PHD finger protein 7; s 32.8 26 0.0009 29.4 2.8 34 284-320 45-79 (85)
148 2r10_A Chromatin structure-rem 29.6 8 0.00027 39.8 -1.1 31 370-402 97-127 (361)
149 2ecn_A Ring finger protein 141 29.5 12 0.00043 28.3 0.2 44 270-321 15-58 (70)
150 2lv9_A Histone-lysine N-methyl 28.2 40 0.0014 28.3 3.2 41 218-268 32-72 (98)
151 3lrq_A E3 ubiquitin-protein li 27.1 13 0.00044 30.7 -0.1 47 270-321 22-68 (100)
152 2ecj_A Tripartite motif-contai 27.0 20 0.00069 25.8 1.0 44 270-317 15-58 (58)
153 2r0y_A Chromatin structure-rem 26.9 4.7 0.00016 40.8 -3.4 32 369-402 46-77 (311)
154 3nw0_A Non-structural maintena 26.8 21 0.00073 34.6 1.4 47 270-320 180-226 (238)
155 3ng2_A RNF4, snurf, ring finge 26.8 6.7 0.00023 29.7 -1.7 48 270-321 10-61 (71)
156 2ysj_A Tripartite motif-contai 26.6 11 0.00037 28.1 -0.6 44 270-317 20-63 (63)
157 2ecv_A Tripartite motif-contai 24.5 14 0.00048 28.6 -0.3 49 270-321 19-69 (85)
158 2ckl_B Ubiquitin ligase protei 23.8 19 0.00066 32.1 0.5 47 270-321 54-100 (165)
159 2ea6_A Ring finger protein 4; 23.8 9.8 0.00034 28.4 -1.3 47 270-320 15-65 (69)
160 3fl2_A E3 ubiquitin-protein li 23.7 13 0.00044 31.7 -0.7 46 270-321 52-97 (124)
161 2ecw_A Tripartite motif-contai 23.5 15 0.00052 28.4 -0.3 49 270-321 19-69 (85)
162 1jm7_A BRCA1, breast cancer ty 23.2 20 0.0007 29.4 0.4 47 271-321 22-68 (112)
163 1chc_A Equine herpes virus-1 r 23.0 14 0.00048 27.8 -0.6 46 270-321 5-50 (68)
164 4ayc_A E3 ubiquitin-protein li 21.9 20 0.00067 31.3 0.1 44 271-321 54-97 (138)
165 2xeu_A Ring finger protein 4; 21.5 8.2 0.00028 28.4 -2.1 47 271-321 4-54 (64)
No 1
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.71 E-value=1.1e-18 Score=164.31 Aligned_cols=124 Identities=22% Similarity=0.488 Sum_probs=94.8
Q ss_pred cccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccccccchhhccCCCCcccccccCCCCCCC
Q 009705 269 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAK 348 (528)
Q Consensus 269 c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~~et~~ksp~i~~e~~~~r~a~~~ 348 (528)
++++|.+|+++| +||+||.|+++||++|+.|+|..+|.|+|+|+.|+.......... ...+....+ .+.....
T Consensus 3 ~~~~C~~C~~~g---~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~e~d-c~~~~~~s~---~~~~~~~ 75 (184)
T 3o36_A 3 NEDWCAVCQNGG---ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYD-CDAPSHNSE---KKKTEGL 75 (184)
T ss_dssp SCSSCTTTCCCS---SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSCCG-GGCCSSCTT---TSCCTTC
T ss_pred CCCccccCCCCC---eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccccccccc-ccccccccc---ccccccc
Confidence 467899999988 799999999999999999999999999999999997653221100 001111111 1122234
Q ss_pred CCCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 349 GEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 349 ~gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
.+|.+..++.++ ++..+...+.+..|..||.. ..++|+++|++||||++-+
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~ 127 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIK 127 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHH
Confidence 568899888888 78888888999899999986 6789999999999997753
No 2
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.71 E-value=1.5e-18 Score=166.54 Aligned_cols=120 Identities=23% Similarity=0.523 Sum_probs=92.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccccccchhhccCCCCcccccccCCCCCCCC
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAKG 349 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~~et~~ksp~i~~e~~~~r~a~~~~ 349 (528)
+++|.+|+++| .||+||.|+++||++|+.|+|..+|.|+|+|+.|+........ ..-++... ........
T Consensus 7 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~~~~---~~c~~~~~----s~k~~~~~ 76 (207)
T 3u5n_A 7 EDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVE---YDCDNLQH----SKKGKTAQ 76 (207)
T ss_dssp CSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCSSC---CSCC--------------CC
T ss_pred CCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccccccc---cccccccc----hhhhhhhh
Confidence 67899999988 7999999999999999999999999999999999976532211 00011111 01123346
Q ss_pred CCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 350 EPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 350 gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
+|++.+++.++ ++..+...+.+..|..||+. ..++|+++|++||||.+-+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~ 127 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVK 127 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHH
Confidence 79999998888 78888889999999999976 6889999999999987743
No 3
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-17 Score=157.08 Aligned_cols=117 Identities=19% Similarity=0.386 Sum_probs=89.5
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccccccchhhccCCCCcccccccCCCCCCCC
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASAKG 349 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~~~~~et~~ksp~i~~e~~~~r~a~~~~ 349 (528)
+++|.+|+.+| .||+||.|+++||++|+.|+|..+|.|+|+|+.|+........ .. ..... ..+......
T Consensus 2 ~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~~~~~-~g----~~s~~--~~~~~~~~~ 71 (189)
T 2ro1_A 2 ATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE-DG----SLSLD--GADSTGVVA 71 (189)
T ss_dssp CCCBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCCTTCS-CS----SCCSS--SSSSSCSSC
T ss_pred CCcCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCCCCcc-cc----ccccc--ccccccccc
Confidence 46899999988 8999999999999999999999999999999999876432110 00 00000 001112345
Q ss_pred CCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCC--CCccCCCCC
Q 009705 350 EPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALG--EPLELDTSE 402 (528)
Q Consensus 350 gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~Ig--ePMdLd~se 402 (528)
+|++.++++++ ++..+.++..+.+|..+|.+ .|+++|+ +||||++-.
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~~------~Yy~iIk~~~PMDL~tIk 121 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLATD------STFSLDQPGGTLDLTLIR 121 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSCC------TTCSSSCSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCCh------hhhccccCCCcccHHHHH
Confidence 79999999888 78888888888899999975 6999998 799997743
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=125.42 Aligned_cols=86 Identities=23% Similarity=0.483 Sum_probs=73.8
Q ss_pred cccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcC
Q 009705 226 KDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIK 305 (528)
Q Consensus 226 ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~ 305 (528)
+++...+.|...|+..++... ...++.+.|+|++| .+|.+|+..++++.||+||.|+++||++|+.|+|.
T Consensus 20 ~~ll~C~~C~~~~H~~Cl~~~---------~~~~~~~~W~C~~C-~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~ 89 (111)
T 2ysm_A 20 LDQFFCTTCGQHYHGMCLDIA---------VTPLKRAGWQCPEC-KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK 89 (111)
T ss_dssp TTSEECSSSCCEECTTTTTCC---------CCTTTSTTCCCTTT-CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS
T ss_pred cCCeECCCCCCCcChHHhCCc---------cccccccCccCCcC-CcccccCccCCCCCeeECCCCCcHHhHHhcCCccc
Confidence 344778999999998887642 23356789999987 68999999998889999999999999999999999
Q ss_pred CCCCCCccChhccccc
Q 009705 306 IVPSDEWFCHLCLKKK 321 (528)
Q Consensus 306 ~iP~g~W~C~~C~~~~ 321 (528)
.+|.|+|||+.|...+
T Consensus 90 ~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 90 SVPTNGWKCKNCRICI 105 (111)
T ss_dssp SCCSSCCCCHHHHCCS
T ss_pred cCCCCCcCCcCCcCcC
Confidence 9999999999998754
No 5
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.50 E-value=2.3e-15 Score=132.60 Aligned_cols=92 Identities=27% Similarity=0.568 Sum_probs=77.1
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccccccccccccccccCCceEeccCCCCcccccccCC
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTP 302 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~P 302 (528)
+.++++..++.|...++..++-... ...+.++.+.|+|++| ..|.+|+..++.+.||+||.|+++||++|+.|
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~~------~~~~~~~~~~W~C~~C-~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 90 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFTL------NMTEAVKTYKWQCIEC-KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP 90 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCCH------HHHHHHHHTTCCCGGG-CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS
T ss_pred CCCCCCeEeCCCCCccchhhCCChh------hhhhccCCCccCcccc-CccCcccccCCCCceEEcCCCCccccccccCC
Confidence 4567889999999999988875310 0113467889999987 68999999887889999999999999999999
Q ss_pred CcCCCCCCCccChhccccc
Q 009705 303 RIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 303 pL~~iP~g~W~C~~C~~~~ 321 (528)
||..+|.|+|||+.|....
T Consensus 91 pl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 91 PVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCSSCCSSCCCCHHHHHHH
T ss_pred CccCCCCCCeECccccchh
Confidence 9999999999999998754
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.47 E-value=7.8e-15 Score=128.79 Aligned_cols=90 Identities=21% Similarity=0.490 Sum_probs=74.4
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccccccccccccccc-cCCceEeccCCCCcccccccC
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSE-TALKLLLCDDCEEAFHVTCYT 301 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c~d~C~VC~~~g-~~~~LL~CD~C~r~yH~~Cl~ 301 (528)
+.++++..++.|...++..++-.. ....+.++.+.|+|++| .+|.+|+..+ +.+.||+||.|+++||++|+.
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~------~~~~~~~~~~~W~C~~C-~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFS------PELTVRVKALRWQCIEC-KTCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCC------HHHHHHHHTSCCCCTTT-CCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred CCchhceEhhhcCCCCCCchhcCC------HHHHHHhhccccccccC-CccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 457789999999999988876421 00113467889999987 6899999864 556899999999999999999
Q ss_pred CCcCCCCCCCccChhccc
Q 009705 302 PRIKIVPSDEWFCHLCLK 319 (528)
Q Consensus 302 PpL~~iP~g~W~C~~C~~ 319 (528)
|+|.++|+|+|||+.|+.
T Consensus 94 p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 94 PPLTRMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCeECCCCCC
Confidence 999999999999999975
No 7
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=5.4e-14 Score=122.03 Aligned_cols=58 Identities=34% Similarity=0.796 Sum_probs=52.3
Q ss_pred cCCCCeEecccccCCCCCCCCcccCCCccccCcccc----cCCCCceeeccccCCCCCCCCCCCCCChHHHHHHHHH
Q 009705 418 SSIGNWLQCKQVLEGTGDGVDGTSCGKWRRAPLFEV----QTDDWECFCAVQWDPTHADCAVPQELETDEVSKQLKY 490 (528)
Q Consensus 418 ds~gnw~qC~~c~~~~g~~~~~i~C~kwrr~p~~~~----~~~~w~c~c~~~Wdp~h~dC~~P~el~~~~~~~~l~~ 490 (528)
....+||||. .|.||||+|..+. ++++|+|++| |||.+.+|.+|||+.++||..+|+.
T Consensus 23 ~~~~~WVQCD-------------~C~KWRrLP~~~~~~~~~pd~W~C~mN--~D~~~nsCs~PEE~~~~ei~~~l~~ 84 (100)
T 2l7p_A 23 STESAWVRCD-------------DCFKWRRIPASVVGSIDESSRWICMNN--SDKRFADCSKSQEMSNEEINEELGI 84 (100)
T ss_dssp SSSSEEEECT-------------TTCCEEEECHHHHTTSTTSSCCCGGGS--SCSSSCSTTSCCSSCHHHHHHHHTC
T ss_pred CCCCeEEeeC-------------CCCccccCChhHccccCCCCCceeCCC--CCCCCCCCCCccCCCHHHHHHHhcc
Confidence 3688999999 8999999998755 6899999997 6999999999999999999888865
No 8
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.41 E-value=1.1e-13 Score=112.58 Aligned_cols=58 Identities=38% Similarity=1.013 Sum_probs=53.6
Q ss_pred CCCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcCCCCCC-CccChhccc
Q 009705 260 DSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 319 (528)
Q Consensus 260 ~~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 319 (528)
.++.|.|++| .|.+|++.++.+.||+||.|+++||++|+.|||..+|.| +|||+.|+.
T Consensus 10 ~~~~w~C~~C--~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 10 DDVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TCTTSCCTTT--SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCeECCCC--CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3568999977 999999887778999999999999999999999999999 999999975
No 9
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=114.60 Aligned_cols=57 Identities=35% Similarity=0.998 Sum_probs=53.3
Q ss_pred CCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCC-ccChhccc
Q 009705 261 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDE-WFCHLCLK 319 (528)
Q Consensus 261 ~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~-W~C~~C~~ 319 (528)
++.|.|+.| .|.+|++.++++.||+||.|+++||++|+.|||..+|.|+ |||+.|+.
T Consensus 19 ~~~W~C~~C--~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 19 DVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CTTSCCTTT--SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCCCCC--cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 478999987 8999999998899999999999999999999999999999 99999974
No 10
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.38 E-value=1.5e-13 Score=104.58 Aligned_cols=49 Identities=41% Similarity=1.009 Sum_probs=46.0
Q ss_pred ccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 272 SCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 272 ~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
.|.+|+.+++.+.||+||.|+++||++|+.|+|.++|.|+|||+.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 5999999988889999999999999999999999999999999999753
No 11
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=112.24 Aligned_cols=57 Identities=33% Similarity=0.905 Sum_probs=52.4
Q ss_pred CCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcCCCCCC-CccChhccc
Q 009705 261 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 319 (528)
Q Consensus 261 ~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 319 (528)
...|.|.++ .|.+|+..++.+.||+||.|+++||++|+.|||..+|.| +|||+.|..
T Consensus 19 ~~~w~C~~c--~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 19 DPEKKCHSC--SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCSSS--SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCeECCCC--CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 457999965 999999887788999999999999999999999999999 999999964
No 12
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.36 E-value=5.7e-13 Score=113.29 Aligned_cols=50 Identities=34% Similarity=0.963 Sum_probs=46.3
Q ss_pred cccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 269 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 269 c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
++++|.+|+.+| +||+||.|+++||++|+.|+|..+|.|+|||+.|....
T Consensus 24 n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 367999999988 89999999999999999999999999999999998653
No 13
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.35 E-value=3.9e-13 Score=106.51 Aligned_cols=49 Identities=31% Similarity=0.935 Sum_probs=45.5
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+++|.+|++++ .||+||.|+++||++|+.|+|..+|.|+|||+.|..+.
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 57899999877 89999999999999999999999999999999998753
No 14
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=5.9e-13 Score=103.51 Aligned_cols=47 Identities=34% Similarity=1.037 Sum_probs=44.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLK 319 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~ 319 (528)
+++|.+|+.++ .||+||.|+++||+.|+.|+|..+|.|+|||+.|..
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 67899999887 899999999999999999999999999999999974
No 15
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.33 E-value=4.6e-13 Score=107.48 Aligned_cols=50 Identities=34% Similarity=0.976 Sum_probs=46.2
Q ss_pred cccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 269 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 269 c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
++++|.+|+.++ .||+||.|+++||++|+.|+|..+|.|+|||+.|..++
T Consensus 7 ~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 367899999887 89999999999999999999999999999999998754
No 16
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.6e-13 Score=113.76 Aligned_cols=60 Identities=28% Similarity=0.741 Sum_probs=52.7
Q ss_pred CCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 261 SGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 261 ~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+.+ ++.|.+|+.+++.+.||+||.|+++||++|+.|||..+|.|+|||+.|....
T Consensus 8 ~s~~~~~~-~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 8 HSSAQFID-SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCCC-CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CchhhccC-CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 34566654 5789999999888899999999999999999999999999999999998754
No 17
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.33 E-value=4.9e-13 Score=113.20 Aligned_cols=56 Identities=21% Similarity=0.702 Sum_probs=48.4
Q ss_pred cccccccccccccc--CCceEeccCCCCcccccccCCCcCC----CCCCCccChhccccccc
Q 009705 268 ICSRSCKICGRSET--ALKLLLCDDCEEAFHVTCYTPRIKI----VPSDEWFCHLCLKKKHK 323 (528)
Q Consensus 268 ~c~d~C~VC~~~g~--~~~LL~CD~C~r~yH~~Cl~PpL~~----iP~g~W~C~~C~~~~~~ 323 (528)
+.+++|.+|+++.. .+.||+||.|+++||++||.|+|.. +|.|+|||+.|+.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 34678999998754 3689999999999999999999995 99999999999886543
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.31 E-value=5.7e-13 Score=107.47 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=44.6
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
...|.+|++++ +||+||.|+++||++|+.|+|..+|.|+|||+.|...
T Consensus 12 ~~~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 46799999877 8999999999999999999999999999999999764
No 19
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.31 E-value=6.3e-13 Score=104.61 Aligned_cols=49 Identities=33% Similarity=0.995 Sum_probs=45.7
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+++|.+|++++ .||+||.|+++||++|+.|+|..+|.|+|||+.|....
T Consensus 5 ~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCCC---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 57899999987 89999999999999999999999999999999998754
No 20
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=102.45 Aligned_cols=48 Identities=31% Similarity=0.982 Sum_probs=44.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
+++|.+|+.++ .||+||.|+++||++|+.|+|..+|.|+|||+.|...
T Consensus 11 ~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQGG---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCCS---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCCC---cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 57899999877 8999999999999999999999999999999999764
No 21
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.25 E-value=1.6e-12 Score=103.64 Aligned_cols=53 Identities=30% Similarity=0.893 Sum_probs=46.3
Q ss_pred ccccccccccc--ccCCceEeccCCCCcccccccCCCcCC--C-CCCCccChhccccc
Q 009705 269 CSRSCKICGRS--ETALKLLLCDDCEEAFHVTCYTPRIKI--V-PSDEWFCHLCLKKK 321 (528)
Q Consensus 269 c~d~C~VC~~~--g~~~~LL~CD~C~r~yH~~Cl~PpL~~--i-P~g~W~C~~C~~~~ 321 (528)
++..|.+|+.+ .+.+.||+||.|+++||++|+.|+|.. + |.|+|||+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 36789999987 345699999999999999999999987 4 89999999998764
No 22
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.21 E-value=6e-12 Score=123.25 Aligned_cols=58 Identities=38% Similarity=1.013 Sum_probs=49.2
Q ss_pred CCCCCCccccccccccccccccCCceEeccCCCCcccccccCCCcCCCCCC-CccChhccc
Q 009705 260 DSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSD-EWFCHLCLK 319 (528)
Q Consensus 260 ~~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g-~W~C~~C~~ 319 (528)
.++.|.|..| .|.+|+..++.+.||+||.|+++||++|+.|||..+|.| +|||+.|..
T Consensus 166 ~~~~w~C~~c--~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 166 DDVNRLCRVC--ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TCTTSCCTTT--SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCEecCCC--CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4668999965 999999988788999999999999999999999999999 999999975
No 23
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.21 E-value=5.2e-12 Score=102.94 Aligned_cols=53 Identities=34% Similarity=0.684 Sum_probs=45.7
Q ss_pred ccCCCCeEecccccCCCCCCCCcccCCCccccCcc---cccCCCCceeeccccCCCCCCCCCCCCCChH
Q 009705 417 LSSIGNWLQCKQVLEGTGDGVDGTSCGKWRRAPLF---EVQTDDWECFCAVQWDPTHADCAVPQELETD 482 (528)
Q Consensus 417 ~ds~gnw~qC~~c~~~~g~~~~~i~C~kwrr~p~~---~~~~~~w~c~c~~~Wdp~h~dC~~P~el~~~ 482 (528)
+....+||||.. -.|+||||||.. ..+|++|+|++|. ||.+++|++|||+.++
T Consensus 12 ~~~~~~WVQCd~-----------p~C~KWR~LP~~~~~~~lpd~W~C~mN~--d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSF-----------PNCGKWRRLCGNIDPSVLPDNWSCDQNT--DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSS-----------TTTCCEEECCSSCCTTTSCTTCCGGGCS--CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCc-----------cccCcccCCccccccccCCCcCEeCCCC--CCccCCCCCCcccCCC
Confidence 456899999992 269999999987 4579999999985 9999999999999874
No 24
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.16 E-value=7.6e-12 Score=102.25 Aligned_cols=50 Identities=34% Similarity=0.901 Sum_probs=44.7
Q ss_pred ccccccccccc--cCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSE--TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g--~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
++.|.+|+.++ +.+.||+||.|+++||++|+.|+ .+|+|+|||+.|..++
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC--cCCCCCcCCccCcCcC
Confidence 56899999876 67899999999999999999887 4999999999998754
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=104.19 Aligned_cols=51 Identities=33% Similarity=0.864 Sum_probs=45.3
Q ss_pred cccccccccccc--cCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 269 CSRSCKICGRSE--TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 269 c~d~C~VC~~~g--~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+++.|.+|+.++ +.+.||+||.|+++||++|+.|++ +|.|+|||+.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 367899999886 667999999999999999999874 899999999998754
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.97 E-value=1.8e-11 Score=113.75 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred cccccccccccc-CCceEeccCCCCcccccccCCCcCC-CCCCCccChhccccccccchhhccCCCCcccccccCCCCCC
Q 009705 270 SRSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKI-VPSDEWFCHLCLKKKHKTLKATARKSPNIISEKGRGRNASA 347 (528)
Q Consensus 270 ~d~C~VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~-iP~g~W~C~~C~~~~~~~~~et~~ksp~i~~e~~~~r~a~~ 347 (528)
..+| +|+..++ ...|+.||.|++.||..|+...... ...+.|+|+.|+....... .
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~---------------------~ 65 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMT---------------------V 65 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHT---------------------T
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhcccc---------------------c
Confidence 4688 9998754 5579999999999999999543221 2357999999987542210 0
Q ss_pred CCCCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 348 KGEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 348 ~~gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
...|++.++.... ++..+...+.+..|..+|.. ...++|+++|++||||.+-
T Consensus 66 ~~~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~~I~~PmdL~tI 118 (174)
T 2ri7_A 66 LTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDP--NDAPDYYGVIKEPMDLATM 118 (174)
T ss_dssp TSBCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCc--ccCCchHHHhCCcCCHHHH
Confidence 1235555544444 66667777888899999864 2577899999999999775
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.93 E-value=3.9e-10 Score=91.99 Aligned_cols=53 Identities=25% Similarity=0.634 Sum_probs=47.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKH 322 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~ 322 (528)
..+|.+|+...+.+.||+||.|++.||+.|+.+++..+|.++|||+.|..+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 56899999987767899999999999999999998888889999999987643
No 28
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.79 E-value=2.6e-09 Score=93.70 Aligned_cols=47 Identities=30% Similarity=0.782 Sum_probs=42.5
Q ss_pred cccccccccccccCCceEecc--CCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 269 CSRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 269 c~d~C~VC~~~g~~~~LL~CD--~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
++++|.+|+++| +||+|| .|+++||++|+. |..+|.|+|||+.|...
T Consensus 14 ~~~~C~~C~~~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 14 HEDYCFQCGDGG---ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SCSSCTTTCCCS---EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCcCCCCC---cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 367999999887 899999 899999999995 99999999999998753
No 29
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.75 E-value=1.8e-09 Score=99.05 Aligned_cols=48 Identities=25% Similarity=0.802 Sum_probs=43.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcC-----C--CCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIK-----I--VPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~-----~--iP~g~W~C~~C~~~ 320 (528)
+++|.+|+++| +||+||.|+++||+.|+.|+|. + .|.|+|+|+.|..+
T Consensus 63 ~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 67999999999 8999999999999999999886 2 58999999999865
No 30
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=88.58 Aligned_cols=50 Identities=20% Similarity=0.663 Sum_probs=45.8
Q ss_pred cccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcc
Q 009705 269 CSRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCL 318 (528)
Q Consensus 269 c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~ 318 (528)
+++.|.+|+.+|+.++||+|+.|+++||++|+.+++..++.+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 36799999999977788999999999999999999888889999999986
No 31
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.58 E-value=2.9e-08 Score=85.36 Aligned_cols=49 Identities=24% Similarity=0.697 Sum_probs=41.6
Q ss_pred cccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 271 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 271 d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..| +|+...+.+.||+||.|++.||+.|+.|++..+|. .|+|+.|+...
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCS-SBCCTTTSSSC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCC-CEECCCCcCCC
Confidence 356 67776666799999999999999999999888885 89999997643
No 32
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.58 E-value=4e-08 Score=80.17 Aligned_cols=48 Identities=29% Similarity=0.858 Sum_probs=40.8
Q ss_pred ccccccccccccCCceEeccC--CC-CcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..+| +|++... ..||.||. |+ ..||+.|+ .|..+|.|.|||+.|...+
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cv--gl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTT--TCSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccC--CcCcCCCCCEECCCCCccc
Confidence 5688 7998543 48999999 87 69999999 6899999999999998754
No 33
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.56 E-value=2.7e-08 Score=78.50 Aligned_cols=47 Identities=30% Similarity=0.875 Sum_probs=39.3
Q ss_pred ccccccccccccCCceEeccC--CC-CcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
..+| +|++..+ +.||.||. |+ ..||+.|+ .|..+|.|.|||+.|..+
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cv--gl~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHC-
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcC--CCCcCCCCCEECcCccCc
Confidence 4678 8998653 48999999 66 79999999 589999999999999764
No 34
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.52 E-value=4e-08 Score=77.43 Aligned_cols=47 Identities=30% Similarity=0.905 Sum_probs=39.9
Q ss_pred ccccccccccccCCceEeccC--CC-CcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
..+| +|++... +.||.||. |+ ..||+.|+ .|...|.|.|||+.|..+
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cv--gl~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACV--DLTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHCC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccC--CcccCCCCCEECcCccCc
Confidence 4678 8998543 48999999 77 69999999 689999999999999764
No 35
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.44 E-value=1.9e-08 Score=90.98 Aligned_cols=49 Identities=24% Similarity=0.831 Sum_probs=43.3
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCc-----CCC--CCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRI-----KIV--PSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL-----~~i--P~g~W~C~~C~~~~ 321 (528)
+++|.+|+++| +|++||.|+++||..|+.|++ .++ |.++|+|..|..+.
T Consensus 57 ~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 57 DEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp BSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 67899999999 899999999999999999874 354 88999999997753
No 36
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.40 E-value=1.2e-07 Score=75.51 Aligned_cols=47 Identities=28% Similarity=0.860 Sum_probs=39.5
Q ss_pred ccccccccccccCCceEeccC--CC-CcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
..+| +|++... ..||.||. |+ ..||+.|+ .|...|.|.|||+.|..+
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGG--TCSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccC--CcCcCCCCCEECcCcccC
Confidence 4678 8998543 38999999 55 99999999 688889999999999764
No 37
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.39 E-value=2e-07 Score=79.65 Aligned_cols=48 Identities=29% Similarity=0.858 Sum_probs=40.6
Q ss_pred ccccccccccccCCceEeccC--CC-CcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CE-EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..+| +|++..+ ..||.||. |+ ..||+.|+ .|...|.+.|||+.|..++
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CV--gl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTT--TCSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccC--CcCcCCCCCEECcCccCcC
Confidence 4678 9998543 48999999 77 68999999 6889999999999998754
No 38
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.38 E-value=1.1e-07 Score=81.01 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=39.6
Q ss_pred ccccccccccccCCceEeccCCC---CcccccccCCCcCCCCCCCccChh-cccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCE---EAFHVTCYTPRIKIVPSDEWFCHL-CLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~---r~yH~~Cl~PpL~~iP~g~W~C~~-C~~~ 320 (528)
..+| +|++... +.||.||.|+ ..||+.|+ .|...|.|.|||+. |...
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CV--gl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCV--GLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTS--SCSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccC--CCCcCCCCCccCChhhcch
Confidence 4578 8997544 3799999976 89999999 68899999999999 9854
No 39
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.18 E-value=1.3e-06 Score=76.59 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCccccccc--ccchhhhccCcccccCCCCCCCCCCCCCCCCCCccccccccccccccccCCceEeccCCCCcccccccC
Q 009705 224 TGKDLSAKD--LCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGICSRSCKICGRSETALKLLLCDDCEEAFHVTCYT 301 (528)
Q Consensus 224 ~~ed~s~~D--~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~ 301 (528)
.++++..+| .|...|+..++. +..+|.|+|+||.+ .|.+|++.. .+.|..|+++||..|+.
T Consensus 23 ~~G~ll~CD~~~Cp~~fH~~Cl~-----------L~~~P~g~W~Cp~c--~C~~C~k~~----~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 23 DGGELVMCDKKDCPKAYHLLCLN-----------LTQPPYGKWECPWH--QCDECSSAA----VSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp CCSEEEECCSTTCCCEECTGGGT-----------CSSCCSSCCCCGGG--BCTTTCSBC----CEECSSSSCEECTTTCT
T ss_pred CCCcEeEECCCCCCcccccccCc-----------CCcCCCCCEECCCC--CCCcCCCCC----CcCcCCCCcchhhhccC
Confidence 578898999 899999888764 45578999999977 899999876 38899999999999999
Q ss_pred CCcCCCCCCCccC
Q 009705 302 PRIKIVPSDEWFC 314 (528)
Q Consensus 302 PpL~~iP~g~W~C 314 (528)
+.|...+.+.|+|
T Consensus 86 g~l~~~~~~~~~c 98 (107)
T 4gne_A 86 GALVPSALEGRLC 98 (107)
T ss_dssp TSCEECTTTTCEE
T ss_pred CcceecCCCCcee
Confidence 9999999999998
No 40
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=1.3e-06 Score=71.05 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=38.4
Q ss_pred cccccccccccCCceEeccCCC---CcccccccCCCcCCCCCCCccChhccccc
Q 009705 271 RSCKICGRSETALKLLLCDDCE---EAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 271 d~C~VC~~~g~~~~LL~CD~C~---r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
.+| +|+...+ +.||.||.|+ ..||+.|+ .|...|.+.|||+.|....
T Consensus 7 ~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cv--gl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCV--GLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHH--TCSSCCSSCCCCHHHHHHH
T ss_pred eEE-EcCCCCC-CCEeEeCCCCCCccCCccccc--ccCcCCCCCEECCCCCccc
Confidence 466 4776543 3899999975 79999999 6788899999999998764
No 41
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.98 E-value=1.1e-06 Score=77.13 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=40.0
Q ss_pred cccccccccc-------cCCceEeccCCCCcccccccCCCcC---CCCCCCccChhcc
Q 009705 271 RSCKICGRSE-------TALKLLLCDDCEEAFHVTCYTPRIK---IVPSDEWFCHLCL 318 (528)
Q Consensus 271 d~C~VC~~~g-------~~~~LL~CD~C~r~yH~~Cl~PpL~---~iP~g~W~C~~C~ 318 (528)
++|.+|.+++ +.++||.|+.|++.||.+|+.+.+. .++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5788998654 3569999999999999999987643 5788999999995
No 42
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.81 E-value=1.3e-05 Score=64.71 Aligned_cols=49 Identities=22% Similarity=0.652 Sum_probs=40.0
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
..+| +|+...+.+.||.||.|...||..|+......+| +.|+|+.|...
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCC-SSCCCHHHHTC
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCC-CcEECCCCCCC
Confidence 4578 9998777668999999999999999976544455 69999999753
No 43
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.75 E-value=3.8e-06 Score=73.44 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=40.1
Q ss_pred cccccccccc------ccCCceEeccCCCCcccccccCC--Cc-CCCCCCCccChhccc
Q 009705 270 SRSCKICGRS------ETALKLLLCDDCEEAFHVTCYTP--RI-KIVPSDEWFCHLCLK 319 (528)
Q Consensus 270 ~d~C~VC~~~------g~~~~LL~CD~C~r~yH~~Cl~P--pL-~~iP~g~W~C~~C~~ 319 (528)
..+|.+|.+. |..++||.|+.|++.||++|+.. .+ ..++.+.|+|+.|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 4578888765 35669999999999999999964 23 356889999999964
No 44
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.74 E-value=1.4e-05 Score=63.02 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=39.6
Q ss_pred cccccccccccc-CCceEeccCCCCcccccccCCCcCCCC-CCCccChhccccc
Q 009705 270 SRSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP-SDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~iP-~g~W~C~~C~~~~ 321 (528)
..+|.+|+...+ ...||.||.|+.-||..|+........ .+.|+|+.|+.++
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 457889998753 458999999999999999954332222 3689999998764
No 45
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.61 E-value=2e-05 Score=68.61 Aligned_cols=51 Identities=31% Similarity=0.741 Sum_probs=40.3
Q ss_pred cccccccccc-cCCceEecc-CCCCcccccccCCCcCC--------CCCCCccChhccccccc
Q 009705 271 RSCKICGRSE-TALKLLLCD-DCEEAFHVTCYTPRIKI--------VPSDEWFCHLCLKKKHK 323 (528)
Q Consensus 271 d~C~VC~~~g-~~~~LL~CD-~C~r~yH~~Cl~PpL~~--------iP~g~W~C~~C~~~~~~ 323 (528)
..|.+|++.- +...|+.|| .|+..||..|+ .|+. .|.+.|+|+.|..+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT--GMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC--CcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 3688999873 334799998 99999999999 5553 47789999999986543
No 46
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.60 E-value=3.3e-05 Score=63.56 Aligned_cols=49 Identities=24% Similarity=0.703 Sum_probs=39.3
Q ss_pred ccccccccccccCCceEecc--CCCCcccccccCCCcCCCC-------CCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIKIVP-------SDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD--~C~r~yH~~Cl~PpL~~iP-------~g~W~C~~C~~~~ 321 (528)
..+| +|+...+...||.|| .|..-||..|+ .|...+ ...|||+.|+..+
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CV--gi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCV--ILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHH--SCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEE--ccccccccccccCCCCEECCCCCccc
Confidence 4578 799886667999999 99999999999 444443 2589999998754
No 47
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.58 E-value=3.3e-05 Score=62.47 Aligned_cols=51 Identities=22% Similarity=0.587 Sum_probs=38.8
Q ss_pred ccccccccccccC-CceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETA-LKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~-~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..+| +|+...+. ..||.||.|...||..|+.........+.|+|+.|..+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3578 69987544 479999999999999999654322234799999998754
No 48
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.54 E-value=1.5e-05 Score=64.96 Aligned_cols=49 Identities=29% Similarity=0.674 Sum_probs=39.0
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCC-------CCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIV-------PSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~i-------P~g~W~C~~C~~~~ 321 (528)
..+| +|+...+...||.||.|+..||..|+. |... +...|+|+.|..+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg--l~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG--ISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS--CCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc--cchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 899887666899999999999999994 4332 24689999998764
No 49
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.54 E-value=2.8e-05 Score=64.01 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=38.1
Q ss_pred ccccccccccc-CCceEeccCCCCcccccccCCCcCCC-CCCCccChhcccccc
Q 009705 271 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIV-PSDEWFCHLCLKKKH 322 (528)
Q Consensus 271 d~C~VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~i-P~g~W~C~~C~~~~~ 322 (528)
.+| +|+...+ ...||.||.|+.-||..|+.-..... ..+.|+|+.|.....
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 467 8988754 56899999999999999995322211 236899999987653
No 50
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.49 E-value=5.3e-05 Score=60.76 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=36.8
Q ss_pred ccccccccccccCCceEeccC--CCCcccccccCCCcCCCC------CCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDD--CEEAFHVTCYTPRIKIVP------SDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~--C~r~yH~~Cl~PpL~~iP------~g~W~C~~C~~~~ 321 (528)
..+| +|+...+.+.||.||. |...||..|+. |...| ...|||+.|+..+
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvg--i~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVL--IPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSC--CCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCC--CCcccccccCCCCcEECcCccCcc
Confidence 3567 7988766679999995 99999999994 33222 2479999998653
No 51
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.41 E-value=4.1e-05 Score=61.39 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=38.5
Q ss_pred ccccccccccc-cCCceEecc-CCCCcccccccCCCcCC--------CCCCCccChhcc
Q 009705 270 SRSCKICGRSE-TALKLLLCD-DCEEAFHVTCYTPRIKI--------VPSDEWFCHLCL 318 (528)
Q Consensus 270 ~d~C~VC~~~g-~~~~LL~CD-~C~r~yH~~Cl~PpL~~--------iP~g~W~C~~C~ 318 (528)
...|.+|++.. +...++.|| .|.+-||..|+ .|+. .|.+.|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv--glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT--GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH--TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc--CCCHHHHHHhhccCCCcEECcCcc
Confidence 45799999874 445899999 99999999999 5554 477899999996
No 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.32 E-value=0.00015 Score=55.13 Aligned_cols=44 Identities=23% Similarity=0.658 Sum_probs=35.6
Q ss_pred cccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccc
Q 009705 275 ICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLK 319 (528)
Q Consensus 275 VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~ 319 (528)
+|+...+...||.||.|..-||..|+......+| +.|+|+.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCC-SSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCC-CcEECcCCCC
Confidence 6777766669999999999999999965444445 6999999964
No 53
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.11 E-value=9.8e-05 Score=62.32 Aligned_cols=51 Identities=25% Similarity=0.587 Sum_probs=40.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCC------------cCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPR------------IKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~Pp------------L~~iP~g~W~C~~C~~~~ 321 (528)
++.|.||.... .+.++-|..|.|.||..|+.++ +.+.+..-|.|+.|....
T Consensus 15 D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 15 DEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp SCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 67899998544 3478899999999999999875 445577789999997643
No 54
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.08 E-value=0.00018 Score=58.63 Aligned_cols=49 Identities=24% Similarity=0.593 Sum_probs=37.0
Q ss_pred ccccccccccc-CCceEeccCCCCcccccccCCCcCCCC--C-CCccChhcccccc
Q 009705 271 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP--S-DEWFCHLCLKKKH 322 (528)
Q Consensus 271 d~C~VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~iP--~-g~W~C~~C~~~~~ 322 (528)
.+| +|+...+ ...||.||.|..-||..|+. |...+ . +.|+|+.|.....
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg--~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVG--VEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHT--CCTTTGGGBSSCCCHHHHHHHC
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEeccccc--ccccccCCCCEEECCCCcccCC
Confidence 345 7887643 45899999999999999994 44433 2 5799999987643
No 55
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.78 E-value=0.00023 Score=54.24 Aligned_cols=45 Identities=24% Similarity=0.668 Sum_probs=34.2
Q ss_pred cccccccccc-CCceEecc-CCCCcccccccCCCcCCCC--CCCccChhcc
Q 009705 272 SCKICGRSET-ALKLLLCD-DCEEAFHVTCYTPRIKIVP--SDEWFCHLCL 318 (528)
Q Consensus 272 ~C~VC~~~g~-~~~LL~CD-~C~r~yH~~Cl~PpL~~iP--~g~W~C~~C~ 318 (528)
.|-+|++..+ ...|+.|| .|+.-||..|+ .|...+ .+.|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cv--gl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCV--GVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTT--TCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCccccc--CCCccccCCCCEECCCCC
Confidence 4778888764 45799999 89999999999 444322 3789999985
No 56
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.35 E-value=0.0012 Score=71.07 Aligned_cols=51 Identities=22% Similarity=0.539 Sum_probs=39.3
Q ss_pred ccccccccccc-CCceEeccCCCCcccccccCCCcCCCCC---CCccChhcccccccc
Q 009705 271 RSCKICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVPS---DEWFCHLCLKKKHKT 324 (528)
Q Consensus 271 d~C~VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~iP~---g~W~C~~C~~~~~~~ 324 (528)
.+| +|+...+ ...|+.||.|+.-||..|+ .+...+. +.|+|+.|.......
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cv--gl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCV--GVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHH--TCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeec--CcCcccccCCCEEECCCCcCCcCcc
Confidence 456 8888643 5689999999999999999 5554432 579999999776544
No 57
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.25 E-value=0.0013 Score=62.53 Aligned_cols=52 Identities=19% Similarity=0.533 Sum_probs=37.7
Q ss_pred cccccccccccCC----ceEeccCCCCcccccccCCCc------CCCCC-CCccChhcccccc
Q 009705 271 RSCKICGRSETAL----KLLLCDDCEEAFHVTCYTPRI------KIVPS-DEWFCHLCLKKKH 322 (528)
Q Consensus 271 d~C~VC~~~g~~~----~LL~CD~C~r~yH~~Cl~PpL------~~iP~-g~W~C~~C~~~~~ 322 (528)
.+|.+|+..-+++ .|+.||.|++-||..|....- ..+|+ ..|+|+.|+.+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3688888764433 499999999999999995421 11232 3799999998654
No 58
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.91 E-value=0.0072 Score=52.41 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=30.0
Q ss_pred CCceEeccCCCCcccccccCCCcCCCCC----CCccChhccccc
Q 009705 282 ALKLLLCDDCEEAFHVTCYTPRIKIVPS----DEWFCHLCLKKK 321 (528)
Q Consensus 282 ~~~LL~CD~C~r~yH~~Cl~PpL~~iP~----g~W~C~~C~~~~ 321 (528)
...||.|+.|++.||..|+.+....++. +.|+|+.|....
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 4568999999999999999886554433 359999998653
No 59
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=94.77 E-value=0.011 Score=64.12 Aligned_cols=39 Identities=21% Similarity=0.677 Sum_probs=30.7
Q ss_pred CceEeccCCCCcccccccCCCcCCC---CCCCccChhccccccc
Q 009705 283 LKLLLCDDCEEAFHVTCYTPRIKIV---PSDEWFCHLCLKKKHK 323 (528)
Q Consensus 283 ~~LL~CD~C~r~yH~~Cl~PpL~~i---P~g~W~C~~C~~~~~~ 323 (528)
..|+.||.|+.-||..|+. +... ..+.|+|+.|......
T Consensus 56 ~~mI~CD~C~~WfH~~CVg--i~~~~a~~~~~y~Cp~C~~~~gp 97 (528)
T 3pur_A 56 FQWIGCDSCQTWYHFLCSG--LEQFEYYLYEKFFCPKCVPHTGH 97 (528)
T ss_dssp TSEEECTTTCCEEEGGGTT--CCGGGTTTEEECCCTTTHHHHCS
T ss_pred CCEEECCCCCcCCCCcCCC--CChhHhcCCCeEECcCCcCCCCC
Confidence 4789999999999999994 4432 3368999999876443
No 60
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.52 E-value=0.011 Score=63.07 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=35.9
Q ss_pred ccccccc-CCceEeccCCCCcccccccCCCcCCCC---CCCccChhccccccc
Q 009705 275 ICGRSET-ALKLLLCDDCEEAFHVTCYTPRIKIVP---SDEWFCHLCLKKKHK 323 (528)
Q Consensus 275 VC~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~iP---~g~W~C~~C~~~~~~ 323 (528)
+|+...+ ...|+.||.|+.-||..|+ .+...+ .+.|+|+.|......
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CV--gi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCV--GVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHH--TCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccC--CcCcccccCCCEEECCCCccccCC
Confidence 7777543 4689999999999999999 444432 268999999876543
No 61
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=93.25 E-value=0.0069 Score=54.37 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 349 GEPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 349 ~gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.+|.|.+++.|+ ++..+.....+..|..||.. ..++|+++|++||||.+-
T Consensus 15 ~~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI 65 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTI 65 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHH
Confidence 468999988888 77888888889999999976 688999999999998774
No 62
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=90.30 E-value=0.034 Score=48.34 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=39.6
Q ss_pred CCChhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 350 EPSPIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 350 gm~Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+..+.++.+|. ++..+..++.+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI 59 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNL--KLVPGYKKVIKKPMDFSTI 59 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCCh--hhcCChHHHcCCCCCHHHH
Confidence 44556667777 77777788888899999975 2568999999999999764
No 63
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=88.49 E-value=0.1 Score=48.60 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=39.9
Q ss_pred ccccccccccccCCceEecc--CCCCcccccccCCCcC-----C-CCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIK-----I-VPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD--~C~r~yH~~Cl~PpL~-----~-iP~g~W~C~~C~~~~ 321 (528)
+.+|.+|+.+| .+++|| .|.+.|=..|+.--+. . +....|.|-.|....
T Consensus 79 ~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 45999999998 999999 8999999999874322 2 456789999998754
No 64
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.69 E-value=0.47 Score=40.00 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=33.4
Q ss_pred cCCCcccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 213 CSSSSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 213 Csss~I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
+-.|.||......+.+..+|.|...|+..|+. +++..+|.|+|+|+.|
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~---------Ppl~~~P~g~W~C~~C 63 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL---------PPLPEIPRGIWRCPKC 63 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSS---------SCCSSCCSSCCCCHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCC---------CCcccCCCCCcCCccC
Confidence 33455553333445688899999888877764 3456789999999855
No 65
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.63 E-value=0.074 Score=46.74 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCChhhhhcccCCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 350 EPSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 350 gm~Pie~~l~elllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+..|....+..++..+.....+..|..+|.. ...++|+++|++||||.+-
T Consensus 4 ~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 53 (121)
T 2d9e_A 4 GSSGFLILLRKTLEQLQEKDTGNIFSEPVPL--SEVPDYLDHIKKPMDFFTM 53 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCSSSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCccHhhCCcCCc--cccCCHHHHcCCCcCHHHH
Confidence 4456555555566666677888899999965 3678999999999999774
No 66
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.11 E-value=0.89 Score=35.35 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
.++++..+|.|...|+..|+. +.+..++.|+|+|+.|
T Consensus 17 ~~g~ll~Cd~C~~~fH~~Cl~---------ppl~~~p~g~W~C~~C 53 (61)
T 1mm2_A 17 DGGELLCCDTCPSSYHIHCLN---------PPLPEIPNGEWLCPRC 53 (61)
T ss_dssp CCSSCBCCSSSCCCBCSSSSS---------SCCSSCCSSCCCCTTT
T ss_pred CCCCEEEcCCCCHHHcccccC---------CCcCcCCCCccCChhh
Confidence 467899999999999888765 3356788999998854
No 67
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=84.94 E-value=0.23 Score=52.22 Aligned_cols=49 Identities=31% Similarity=0.815 Sum_probs=39.7
Q ss_pred ccccccccccccCCceEecc--CCCCcccccccCCCcC-----C-CCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCD--DCEEAFHVTCYTPRIK-----I-VPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD--~C~r~yH~~Cl~PpL~-----~-iP~g~W~C~~C~~~~ 321 (528)
+.+|..|+.+| ++++|| .|.++|=..|+.-.+. . .....|.|-.|..+.
T Consensus 93 ~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 93 QSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp BCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 45899999998 899999 9999999999875332 1 234689999998764
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.36 E-value=0.44 Score=37.95 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=30.6
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
.+++++..+|.|...|+..|+. +.+..+|.|+|+|+.|
T Consensus 19 ~~~~~ll~Cd~C~~~~H~~Cl~---------P~l~~~P~g~W~C~~C 56 (66)
T 2lri_C 19 GDGTDVLRCTHCAAAFHWRCHF---------PAGTSRPGTGLRCRSC 56 (66)
T ss_dssp SCCTTCEECSSSCCEECHHHHC---------TTTCCCCSSSCCCTTT
T ss_pred CCCCeEEECCCCCCceecccCC---------CccCcCCCCCEECccc
Confidence 4678899999999999988865 3457789999998843
No 69
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.92 E-value=1 Score=38.05 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=30.0
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGI 268 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~ 268 (528)
..++++..+|.|...|+..|+. +.+..+|.|+|+|+.
T Consensus 32 ~~~g~LL~CD~C~~~fH~~Cl~---------PpL~~~P~g~W~C~~ 68 (88)
T 1fp0_A 32 QKPGDLVMCNQCEFCFHLDCHL---------PALQDVPGEEWSCSL 68 (88)
T ss_dssp CSSSCCEECTTSSCEECTTSSS---------TTCCCCCSSSCCCCS
T ss_pred CCCCCEEECCCCCCceecccCC---------CCCCCCcCCCcCCcc
Confidence 4567899999999999988865 345778999999984
No 70
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=83.80 E-value=0.16 Score=46.97 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=34.4
Q ss_pred hhhhhccc-CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 353 PIELMLTS-TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 353 Pie~~l~e-lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
...+.++. ++..+...+.+..|..||..-....++|+++|++||||.+-
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI 69 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCI 69 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHH
Confidence 33444555 66677777888899999965222478999999999999774
No 71
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=83.54 E-value=0.28 Score=42.01 Aligned_cols=38 Identities=18% Similarity=0.607 Sum_probs=28.9
Q ss_pred ceEeccCCCCcccccccCCC------cCCCCC-CCccChhccccc
Q 009705 284 KLLLCDDCEEAFHVTCYTPR------IKIVPS-DEWFCHLCLKKK 321 (528)
Q Consensus 284 ~LL~CD~C~r~yH~~Cl~Pp------L~~iP~-g~W~C~~C~~~~ 321 (528)
.|+.||.|...||..|..-. |..+|. ..|.|+.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 47899999999999998532 234563 479999998754
No 72
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.86 E-value=0.74 Score=37.70 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=38.0
Q ss_pred ccCCcC--CCcccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCC-CCCcccc
Q 009705 209 ETGECS--SSSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 269 (528)
Q Consensus 209 d~~ECs--ss~I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g-~~~cp~c 269 (528)
..+.|. .+.++.....++++...|.|...|+..++. +++..+|.| +|+|+.|
T Consensus 20 ~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~---------Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLN---------PPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSS---------SCCSSCCCSSCCCCTTT
T ss_pred CCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccC---------CCccCCCCCCCcCCcCc
Confidence 344554 456665545688899999999999888765 346778899 9999854
No 73
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=82.55 E-value=0.13 Score=45.19 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=36.9
Q ss_pred CChhhhhcccCCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 351 PSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 351 m~Pie~~l~elllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
..|....+..++..+.....+..|..||.. ...++|+++|++||||.+-
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 59 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTD--AIAPGYSMIIKHPMDFGTM 59 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCCh--hhccCHHHHCCCCCCHHHH
Confidence 455555444466667777888899999964 2568999999999998774
No 74
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=81.65 E-value=0.11 Score=45.08 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=31.6
Q ss_pred cCCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 360 STVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 360 elllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.++..+...+.+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 23 ~il~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~Pmdl~tI 62 (116)
T 3nxb_A 23 KVLDVVKAHKDSWPFLEPVDE--SYAPNYYQIIKAPMDISSM 62 (116)
T ss_dssp HHHHHHHHSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHHhCCCcHhhcCcCCh--hhccChHHHcCCCCCHHHH
Confidence 355566677778899999976 2578999999999999764
No 75
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.34 E-value=0.85 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=29.8
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGI 268 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~ 268 (528)
..++++..+|.|...|+..|+. +.+..+|.|+|+|+.
T Consensus 14 ~~~g~ll~Cd~C~~~~H~~Cl~---------p~l~~~p~~~W~C~~ 50 (207)
T 3u5n_A 14 QNGGDLLCCEKCPKVFHLTCHV---------PTLLSFPSGDWICTF 50 (207)
T ss_dssp CCCEEEEECSSSSCEECTTTSS---------SCCSSCCSSCCCCTT
T ss_pred CCCCceEEcCCCCCccCCccCC---------CCCCCCCCCCEEeCc
Confidence 5677899999999999988865 345678899999883
No 76
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=80.15 E-value=0.19 Score=45.96 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=32.7
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+...+.+.+|..+|..-....++|+++|++||||.+-
T Consensus 40 il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI 80 (154)
T 4alg_A 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTI 80 (154)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHH
Confidence 55667777888899999976222478999999999999874
No 77
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=79.50 E-value=0.19 Score=44.60 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=37.3
Q ss_pred CChhhhhcccCCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 351 PSPIELMLTSTVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 351 m~Pie~~l~elllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+.+....+..++..+...+.+..|..+|.. ...++|+++|++||||.+-
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 59 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSL--KEVPDYLDHIKHPMDFATM 59 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCCh--hhcCCHHHHhCCCCCHHHH
Confidence 455554455566667777888899999976 2578999999999998764
No 78
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=79.43 E-value=0.1 Score=45.76 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=29.6
Q ss_pred cCCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 360 STVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 360 elllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.++..+.....+..|..||.. ...++|+++|++||||++-
T Consensus 15 ~il~~L~~~~~~~~F~~PVd~--~~~pdY~~iIk~PMDL~tI 54 (117)
T 2i7k_A 15 QLMRQLQRKDPSAFFSFPVTD--FIAPGYSMIIKHPMDFSTM 54 (117)
T ss_dssp HHHHHHHTSSGGGTSSSCCCT--TTSSSHHHHCSCCCCHHHH
T ss_pred HHHHHHHhCcccHHhcCCCCc--cccCCHHHHhCCCCCHHHH
Confidence 344444455666789999965 3578999999999999764
No 79
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.20 E-value=0.97 Score=36.22 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=37.6
Q ss_pred ccCCcCCC--cccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCC-CCCcccc
Q 009705 209 ETGECSSS--SAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 269 (528)
Q Consensus 209 d~~ECsss--~I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g-~~~cp~c 269 (528)
..+.|..+ .++.....++++...|.|...|+..++. +++..+|.| +|+|+.|
T Consensus 12 ~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~---------Ppl~~~P~g~~W~C~~C 66 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD---------PPLSSVPSEDEWYCPEC 66 (70)
T ss_dssp TTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSS---------SCCSSCCSSSCCCCTTT
T ss_pred CCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCC---------CCcCCCCCCCCcCCcCc
Confidence 34666655 5554444678888999999998888764 346678889 9999854
No 80
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=79.09 E-value=0.28 Score=43.38 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=31.7
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+.....+..|..+|..-....++|+++|++||||.+-
T Consensus 29 il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI 69 (127)
T 2oss_A 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTI 69 (127)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHH
Confidence 55566677788899999964223578999999999999774
No 81
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=79.02 E-value=1.3 Score=41.76 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.8
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
..++++..+|.|...|+..|+. +.+..+|.|+|.|+.|
T Consensus 9 ~~~g~ll~Cd~C~~~~H~~Cl~---------p~l~~~p~g~W~C~~C 46 (189)
T 2ro1_A 9 QKPGDLVMCNQCEFCFHLDCHL---------PALQDVPGEEWSCSLC 46 (189)
T ss_dssp CCCSSCCCCTTTCCBCCSTTST---------TCCSSCCCTTCCTTTT
T ss_pred CCCCceeECCCCCchhccccCC---------CCcccCCCCCCCCcCc
Confidence 5677899999999999988865 3456788999998854
No 82
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=78.80 E-value=0.15 Score=44.76 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+..++.+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 18 il~~l~~~~~s~~F~~pv~~--~~~pdY~~~I~~PmdL~tI 56 (123)
T 3q2e_A 18 LVNLIFQCEDSEPFRQPVDL--VEYPDYRDIIDTPMDFGTV 56 (123)
T ss_dssp HHHHHHTSGGGGGGSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCCCcHhhcCCCCh--hhcCCHHHHcCCCCCHHHH
Confidence 56667777888899999975 2578999999999998774
No 83
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=78.29 E-value=1.1 Score=36.75 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=35.8
Q ss_pred CCcC--CCcccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCC-CCcccc
Q 009705 211 GECS--SSSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGT-GCSGIC 269 (528)
Q Consensus 211 ~ECs--ss~I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~-~~cp~c 269 (528)
+.|. ++.+|......+++...|.|...|+..++. +++..+|.|+ |+|+.|
T Consensus 22 W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~---------PpL~~~P~g~~W~C~~C 74 (77)
T 3shb_A 22 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD---------PPLSSVPSEDEWYCPEC 74 (77)
T ss_dssp SCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSS---------SCCSSCCSSSCCCCTTT
T ss_pred CCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCC---------CcccCCCCCCceECcCc
Confidence 5555 455555555567788899999888887765 4467789998 999854
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.95 E-value=0.81 Score=33.93 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=30.7
Q ss_pred ccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 218 AVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 218 I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
++......+++..+|.|...|+..++. +.+..+|.|+|+|+.|
T Consensus 5 vC~~~~~~~~ll~Cd~C~~~~H~~Cl~---------p~l~~~P~g~W~C~~C 47 (51)
T 1f62_A 5 VCRKKGEDDKLILCDECNKAFHLFCLR---------PALYEVPDGEWQCPAC 47 (51)
T ss_dssp TTCCSSCCSCCEECTTTCCEECHHHHC---------TTCCSCCSSCCSCTTT
T ss_pred CCCCCCCCCCEEECCCCChhhCcccCC---------CCcCCCCCCcEECcCc
Confidence 443334456788899999988888764 2356678899998854
No 85
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=76.20 E-value=0.1 Score=45.41 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=33.4
Q ss_pred Chhhhhccc-CCCccccccc---CCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 352 SPIELMLTS-TVPYTTSVRV---GKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 352 ~Pie~~l~e-lllyl~cVR~---G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.+.+.+.|. ++..+..... +.+|..||..-....++|+++|++||+|.+-
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI 60 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHH
Confidence 344455555 5555555544 5679999975211267999999999999764
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.91 E-value=1.2 Score=35.09 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.4
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
.++++..+|.|...|+..|+. +++..+|.|+|+|+.|
T Consensus 16 ~~g~ll~CD~C~~~fH~~Cl~---------ppl~~~P~g~W~C~~C 52 (66)
T 1xwh_A 16 DGGELICCDGCPRAFHLACLS---------PPLREIPSGTWRCSSC 52 (66)
T ss_dssp CCSSCEECSSCCCEECTTTSS---------SCCSSCCSSCCCCHHH
T ss_pred CCCCEEEcCCCChhhcccccC---------CCcCcCCCCCeECccc
Confidence 456888899999888887765 3456778899998843
No 87
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=75.39 E-value=0.19 Score=43.33 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+..++.+..|..+|.. ...++|+++|++||+|.+-
T Consensus 15 il~~l~~~~~~~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 53 (112)
T 3d7c_A 15 LLAQIKSHPSAWPFMEPVKK--SEAPDYYEVIRFPIDLKTM 53 (112)
T ss_dssp HHHHHHHSGGGGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHcCCCchhhcCCCCc--ccccCHHHHccCCcCHHHH
Confidence 44555566778899999965 3578999999999999774
No 88
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=75.17 E-value=0.21 Score=43.83 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+...+.+..|..+|.. ...++|+++|++||+|.+-
T Consensus 21 il~~l~~~~~a~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 59 (121)
T 1e6i_A 21 ILTELQNHAAAWPFLQPVNK--EEVPDYYDFIKEPMDLSTM 59 (121)
T ss_dssp HHHHHHHSTTCGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHcCCCchhhCCCCCh--hhCcCHHHHcCCCCCHHHH
Confidence 55555567778899999975 3578999999999999774
No 89
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=74.64 E-value=2.3 Score=40.25 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=31.0
Q ss_pred cccccc-CCceEeccCCCCcccccccCCCcCC-CCC---CCccChhcccc
Q 009705 276 CGRSET-ALKLLLCDDCEEAFHVTCYTPRIKI-VPS---DEWFCHLCLKK 320 (528)
Q Consensus 276 C~~~g~-~~~LL~CD~C~r~yH~~Cl~PpL~~-iP~---g~W~C~~C~~~ 320 (528)
||+.++ ...+|.|+.|.+.||..|+..+... +|- ....|..|...
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 565543 3478999999999999999754433 331 24569999764
No 90
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=73.44 E-value=0.23 Score=44.12 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+..+..+..|..+|.. ...++|+++|++||||.+-
T Consensus 29 il~~l~~~~~s~~F~~pv~~--~~~pdY~~iI~~Pmdl~tI 67 (135)
T 3mb3_A 29 LLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATV 67 (135)
T ss_dssp HHHHHHHSGGGGGGSSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCCCChhhcCCCCh--hhCCCHHHHhCCCcCHHHH
Confidence 66677777888899999975 3678999999999998764
No 91
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.46 E-value=2.2 Score=34.24 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=23.6
Q ss_pred eccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 287 LCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 287 ~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
.--.|...||..|+..-|.... .||.|+...
T Consensus 44 ~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 74 (81)
T 2ecl_A 44 VWGECNHSFHNCCMSLWVKQNN----RCPLCQQDW 74 (81)
T ss_dssp EEETTSCEEEHHHHHHHTTTCC----BCTTTCCBC
T ss_pred EeCCCCCccChHHHHHHHHhCC----CCCCcCCCc
Confidence 3347999999999987766542 799998753
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.79 E-value=1.7 Score=33.41 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
.++++..+|.|...|+..|+. +++..+|.|.|+|+.|
T Consensus 13 ~~g~ll~Cd~C~~~fH~~Cl~---------ppl~~~p~g~W~C~~C 49 (60)
T 2puy_A 13 KSGQLLMCDTCSRVYHLDCLD---------PPLKTIPKGMWICPRC 49 (60)
T ss_dssp CCSSCEECSSSSCEECGGGSS---------SCCSSCCCSCCCCHHH
T ss_pred CCCcEEEcCCCCcCEECCcCC---------CCcCCCCCCceEChhc
Confidence 356888899999998887765 3356678899998844
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=71.77 E-value=1.7 Score=33.71 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
.++++..+|.|...|+..|+.- ++..+|.|+|+|+.|
T Consensus 19 ~~g~ll~CD~C~~~fH~~Cl~p---------~l~~~p~g~W~C~~C 55 (61)
T 2l5u_A 19 QGGEIILCDTCPRAYHMVCLDP---------DMEKAPEGKWSCPHC 55 (61)
T ss_dssp CCSSEEECSSSSCEEEHHHHCT---------TCCSCCCSSCCCTTG
T ss_pred CCCcEEECCCCChhhhhhccCC---------CCCCCCCCceECccc
Confidence 4578888999999998887652 345678999998844
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.74 E-value=1.8 Score=32.84 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=28.0
Q ss_pred CcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 225 GKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 225 ~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
++++..+|.|...|+..++. +++..+|.|.|+|+.|
T Consensus 18 ~g~ll~Cd~C~~~~H~~Cl~---------ppl~~~p~g~W~C~~C 53 (56)
T 2yql_A 18 SGQLLMCDTCSRVYHLDCLD---------PPLKTIPKGMWICPRC 53 (56)
T ss_dssp SSCCEECSSSSCEECSSSSS---------SCCCSCCCSSCCCHHH
T ss_pred CCeEEEcCCCCcceECccCC---------CCcCCCCCCceEChhh
Confidence 46888899999998888765 3456688899998854
No 95
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.64 E-value=2 Score=42.07 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCcC--CCcccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCC-CCCcccc
Q 009705 211 GECS--SSSAVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSG-TGCSGIC 269 (528)
Q Consensus 211 ~ECs--ss~I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g-~~~cp~c 269 (528)
+.|. .|.+|.....++++..+|.|...|+..|+. +++..+|.| +|+|+.|
T Consensus 170 w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~---------PPL~~vP~G~~W~Cp~C 222 (226)
T 3ask_A 170 RLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD---------PPLSSVPSEDEWYCPEC 222 (226)
T ss_dssp SCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC-----------CCCCSCCSSSCCCCGGG
T ss_pred EecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCC---------CCcccCCCCCCCCCcCC
Confidence 4444 466665545578888999999988888764 456778899 9999855
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=71.04 E-value=2.3 Score=39.40 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=29.8
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGI 268 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~ 268 (528)
..++++..+|.|...|+..|+. +.+..+|.|+|+|+.
T Consensus 11 ~~~g~ll~Cd~C~~~~H~~C~~---------p~l~~~p~~~W~C~~ 47 (184)
T 3o36_A 11 QNGGELLCCEKCPKVFHLSCHV---------PTLTNFPSGEWICTF 47 (184)
T ss_dssp CCCSSCEECSSSSCEECTTTSS---------SCCSSCCSSCCCCTT
T ss_pred CCCCeeeecCCCCcccCccccC---------CCCCCCCCCCEECcc
Confidence 5678899999999999988865 345678899999883
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.13 E-value=0.29 Score=41.61 Aligned_cols=89 Identities=18% Similarity=0.350 Sum_probs=52.1
Q ss_pred ccccccccchhhhccCcccccCCCCCCCCC---CCCCCCC---CCcccccccccccccccc----CCceEeccCCCCccc
Q 009705 227 DLSAKDLCISILRNEGMLERFWPTQIRSSA---NDVDSGT---GCSGICSRSCKICGRSET----ALKLLLCDDCEEAFH 296 (528)
Q Consensus 227 d~s~~D~C~sil~~~gl~~~~~~~~~~~~~---e~v~~g~---~~cp~c~d~C~VC~~~g~----~~~LL~CD~C~r~yH 296 (528)
+....-.|.|+|+..|+..- .......+ +.+.... -+-.+....|.+|...-. ....+..-.|+..||
T Consensus 25 ~~~~~~~CgH~fc~~Ci~~~--~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc 102 (133)
T 4ap4_A 25 RLIVSTECGHVFCSQCLRDS--LKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC 102 (133)
T ss_dssp CCEEEETTCCEEEHHHHHHH--HTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEE
T ss_pred cCeEecCCCChhhHHHHHHH--HHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhh
Confidence 33345579999999988652 11111221 2111111 011112467999986431 123445668999999
Q ss_pred ccccCCCcCCCCCCCccChhccccc
Q 009705 297 VTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 297 ~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..|+.+.+... ..||.|+..-
T Consensus 103 ~~Ci~~~~~~~----~~CP~Cr~~~ 123 (133)
T 4ap4_A 103 SQCLRDSLKNA----NTCPTCRKKI 123 (133)
T ss_dssp HHHHHHHHHHC----SBCTTTCCBC
T ss_pred HHHHHHHHHcC----CCCCCCCCcC
Confidence 99998766543 4899998754
No 98
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=68.88 E-value=0.75 Score=42.28 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.5
Q ss_pred ccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 365 TTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 365 l~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
+...+.+.+|..||.. ...++|+++|++||||.+-+
T Consensus 42 l~~~~~s~~F~~PVd~--~~~PdY~~iIk~PMDL~tI~ 77 (158)
T 3uv4_A 42 MMAVPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETIR 77 (158)
T ss_dssp TTTSTTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHHH
T ss_pred HHcCCCchhhcCcCCh--hhcccHHHHcCCccCHHHHH
Confidence 4456677789999975 25789999999999997753
No 99
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.50 E-value=2.1 Score=31.06 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=32.4
Q ss_pred ccccccccccccC-CceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETA-LKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~-~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
+..|.+|...-.. +.......|...||..|+...+.. ...||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 3568899875432 234444569999999999876654 3479999863
No 100
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=66.54 E-value=0.51 Score=41.34 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=26.0
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+.+.+..|..+|.. ...++|+++|++||||.+-
T Consensus 35 g~~~s~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 67 (124)
T 3mb4_A 35 GRRLSAIFLRLPSR--SELPDYYLTIKKPMDMEKI 67 (124)
T ss_dssp SCBGGGGGSCCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhhcCCCc--cccCCHHHHcCCCCCHHHH
Confidence 35566789998765 3567899999999999775
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.27 E-value=2.4 Score=35.38 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.5
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
..+++..+|.|...|+..|+.- ..+|.|+|+|+.|
T Consensus 38 ~~~~ll~CD~C~~~fH~~Cl~p-----------~~vP~g~W~C~~C 72 (88)
T 2l43_A 38 NSNVILFCDMCNLAVHQECYGV-----------PYIPEGQWLCRHC 72 (88)
T ss_dssp SEEEEEECSSSCCCCCHHHHTC-----------SSCCSSCCCCHHH
T ss_pred CCCCEEECCCCCchhhcccCCC-----------CccCCCceECccc
Confidence 3458888999999998887663 1378899998743
No 102
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=65.74 E-value=0.45 Score=42.19 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=31.5
Q ss_pred hhhhccc-CCCcccccc---cCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 354 IELMLTS-TVPYTTSVR---VGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 354 ie~~l~e-lllyl~cVR---~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.++..|. ++..+.... .+.+|..+|..-....++|+++|++||||.+-
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI 73 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 73 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHH
Confidence 3444555 444444443 25579999854222368999999999999764
No 103
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=65.53 E-value=2 Score=32.73 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=32.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.....+..-.|...||..|+...+... ..||.|+..-
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccc
Confidence 45799997654332334444699999999997655442 3599998753
No 104
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=65.50 E-value=0.85 Score=40.29 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=28.6
Q ss_pred CCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 362 VPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 362 llyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+..+...+.+.+|..+|.. ...++|+++|++||||++-
T Consensus 19 l~~l~~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 56 (130)
T 3dai_A 19 THRLAIDKRFRVFTKPVDP--DEVPDYVTVIKQPMDLSSV 56 (130)
T ss_dssp HHHHHTSGGGGGGSSCCCT--TTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHcCCccHhhcCCCCh--hhcCCHHHHcCCCCCHHHH
Confidence 3344455667789999965 2578999999999999774
No 105
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.48 E-value=1 Score=35.22 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=33.0
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
+..|.+|...-.....+..-.|...||..|+...+... ..||.|+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~ 69 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRAD 69 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCc
Confidence 45799999764433444444689999999997755432 479999864
No 106
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.25 E-value=0.72 Score=40.37 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=24.9
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 368 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 368 VR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
.+.+..|..+|.. ...++|+++|++||||.+-
T Consensus 34 ~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 65 (123)
T 2dat_A 34 RQLSEVFIQLPSR--KELPEYYELIRKPVDFKKI 65 (123)
T ss_dssp CBSGGGGTSCCCT--TTSCHHHHHCSSCCCHHHH
T ss_pred CeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 3456689998854 3568999999999998764
No 107
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=64.28 E-value=0.94 Score=51.14 Aligned_cols=52 Identities=27% Similarity=0.611 Sum_probs=34.1
Q ss_pred CeEecccccCCCCCCCCcccCCCccccCcc----cccCCCCceeeccccC---CCCCCCCCCCCCChHHH
Q 009705 422 NWLQCKQVLEGTGDGVDGTSCGKWRRAPLF----EVQTDDWECFCAVQWD---PTHADCAVPQELETDEV 484 (528)
Q Consensus 422 nw~qC~~c~~~~g~~~~~i~C~kwrr~p~~----~~~~~~w~c~c~~~Wd---p~h~dC~~P~el~~~~~ 484 (528)
-|+||.. -.|+||||+|=. ..+..++.|-+-..=+ -.--.|+.|+++...++
T Consensus 92 ~~~~c~~-----------~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (776)
T 4gut_A 92 YWVQCTK-----------PECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEV 150 (776)
T ss_dssp CEEECCC-----------TTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHHHHHT
T ss_pred HhhhcCc-----------ccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccchhhc
Confidence 3999991 259999997644 4556789998874221 11345899988665554
No 108
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=64.24 E-value=0.89 Score=35.23 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=33.6
Q ss_pred ccccccccccccCCceEec--cCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLC--DDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~C--D~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...+++..++-| .+.-+.||..|+..-+.. .+.+.|+.|+...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~--~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVY 57 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh--CCCCccCCCCCee
Confidence 4579999876543333444 333458999999877653 2468999998754
No 109
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=63.88 E-value=0.67 Score=41.19 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=26.1
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+...+.+|..+|.. ...++|+++|++||+|.+-
T Consensus 37 g~~~s~~F~~pv~~--~~~PdY~~iIk~PMdL~tI 69 (130)
T 3k2j_A 37 GQLIAEPFYHLPSK--KKYPDYYQQIKMPISLQQI 69 (130)
T ss_dssp SCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCCccHhhcCCCCh--hhCccHHHHcCCCCCHHHH
Confidence 45567789998865 3567899999999999774
No 110
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.73 E-value=1.3 Score=36.09 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=32.8
Q ss_pred ccccccccccccC-CceEe-c--cCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETA-LKLLL-C--DDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~-~~LL~-C--D~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
.+.|.+|....+. +.++. | .+.-..||..|+..-|..- +...|+.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~ 68 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEF 68 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCee
Confidence 4579999865432 34432 2 2234899999998766542 346899998765
No 111
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=63.33 E-value=0.69 Score=40.28 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=25.7
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+.+++..|..+|.. ...++|+++|++||+|.+-
T Consensus 28 g~~~s~~F~~~~~~--~~~pdY~~iIk~PmdL~tI 60 (120)
T 3ljw_A 28 GRLISELFQKLPSK--VQYPDYYAIIKEPIDLKTI 60 (120)
T ss_dssp SCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhcCCCCc--ccCCChHHHcCCCCCHHHH
Confidence 44557789888765 3567999999999999774
No 112
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=63.14 E-value=0.82 Score=40.04 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.4
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+...+.+|..+|.. ...++|+++|++||||++-
T Consensus 29 g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 61 (126)
T 3mqm_A 29 RQALAAPLLNLPPK--KKNADYYEKISDPLDLITI 61 (126)
T ss_dssp CCBTTGGGSSCCCG--GGCTTHHHHCSSCCCHHHH
T ss_pred CCChhHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 34556689988864 2567999999999999764
No 113
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.02 E-value=1.1 Score=40.03 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+.....+..|..| .++|+++|++||||.+-
T Consensus 20 il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI 53 (131)
T 2dkw_A 20 VTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTV 53 (131)
T ss_dssp HHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHH
T ss_pred HHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHH
Confidence 44445555667788876 44799999999999774
No 114
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=61.99 E-value=1.8 Score=35.46 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=32.3
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
+..|.+|...-..+..+..-.|...||..|+...+... -.||.|+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~ 86 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCM 86 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCB
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCcc
Confidence 45799998654333333333499999999998766532 379999864
No 115
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=60.99 E-value=0.75 Score=40.65 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=25.5
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+.+.+..|..+|.. ...++|+++|++||||++-
T Consensus 32 ~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI 64 (129)
T 2grc_A 32 GRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKI 64 (129)
T ss_dssp CCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred cCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHH
Confidence 34456689998764 3568999999999999764
No 116
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=60.45 E-value=1.9 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.536 Sum_probs=28.5
Q ss_pred cccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 271 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 271 d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
.+|.+|++.+ |+.|+..||++|+.++ .|.|..|...
T Consensus 8 ~~C~~C~~~~-------C~~C~~c~~~~~~~~~-------~~~~~~c~~~ 43 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCHYCRDMKKFGGP-------GRMKQSCVLR 43 (117)
T ss_dssp SCSHHHHSCC-------CSCSHHHHHSGGGTSC-------CCSCCCCGGG
T ss_pred CcCcCcCCcC-------CCCCCCCcCCcccCCC-------Cccccchhhe
Confidence 3678888653 9999999999998654 5888888754
No 117
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=60.15 E-value=3.3 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=32.0
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.....+.--.|...||..|+...+... ..||.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCcc
Confidence 45789998754322232223588999999997665432 4799998754
No 118
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=58.63 E-value=0.84 Score=39.55 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=28.8
Q ss_pred CCCcccc-cccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTS-VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~c-VR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+.+ .+.+.+|..||...-...++|+++|++||+|++-
T Consensus 19 ~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI 60 (119)
T 3p1f_A 19 TLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTI 60 (119)
T ss_dssp HHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHH
T ss_pred HHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHH
Confidence 3334334 4567789999975111368999999999999774
No 119
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=58.60 E-value=2.2 Score=35.82 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred ccCCCCcccccccCCCcCCCC-CCCccChhccccc
Q 009705 288 CDDCEEAFHVTCYTPRIKIVP-SDEWFCHLCLKKK 321 (528)
Q Consensus 288 CD~C~r~yH~~Cl~PpL~~iP-~g~W~C~~C~~~~ 321 (528)
--.|...||..|+...+..-. ...-.||.|+...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 456889999999987663221 2345799998754
No 120
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.57 E-value=1.9 Score=33.44 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=31.8
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+..|.+|...-.....+.--.|...||..|+...+... -.||.|+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccc
Confidence 35789998764322222222589999999997655432 2799998753
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.44 E-value=3.4 Score=34.37 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=27.6
Q ss_pred CcccccccccchhhhccCcccccCCCCCCCCCC----CCCCCCCCcccc
Q 009705 225 GKDLSAKDLCISILRNEGMLERFWPTQIRSSAN----DVDSGTGCSGIC 269 (528)
Q Consensus 225 ~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e----~v~~g~~~cp~c 269 (528)
...+..+|.|...|+..|+. +.+. .++.|.|+|+.|
T Consensus 30 ~~~ll~CD~C~~~yH~~Cl~---------Ppl~~~~~~~p~g~W~C~~C 69 (88)
T 1wev_A 30 GNQLVECQECHNLYHQDCHK---------PQVTDKEVNDPRLVWYCARC 69 (88)
T ss_dssp TCCEEECSSSCCEEETTTSS---------SCCCHHHHHCTTCCCCCHHH
T ss_pred CCceEECCCCCCeEcCccCC---------CcccccccCCCCCCeeCccc
Confidence 36788899999999998865 2333 378999998843
No 122
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=55.90 E-value=4.3 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 224 TGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 224 ~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
..+++..+|.|...|+..|+-- ..+|.|+|+|+.|
T Consensus 29 ~~~~ll~CD~C~~~~H~~Cl~~-----------~~vP~g~W~C~~C 63 (71)
T 2ku3_A 29 NSNVILFCDMCNLAVHQECYGV-----------PYIPEGQWLCRHC 63 (71)
T ss_dssp SSSCEEECSSSCCEEEHHHHTC-----------SSCCSSCCCCHHH
T ss_pred CCCCEEECCCCCCccccccCCC-----------CcCCCCCcCCccC
Confidence 4568888999999998888652 2378899998744
No 123
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=55.78 E-value=2.5 Score=30.54 Aligned_cols=47 Identities=30% Similarity=0.530 Sum_probs=32.1
Q ss_pred ccccccccccc-cCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSE-TALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g-~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
+..|.+|...- +.+..+..-.|...||..|+...+... ..||.|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 35788998753 222345556789999999997654432 579999764
No 124
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=55.44 E-value=0.74 Score=39.76 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=24.4
Q ss_pred cccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 368 VRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 368 VR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
...+..|..+|.. ...++|+++|++||+|.+-
T Consensus 26 ~~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI 57 (116)
T 3iu5_A 26 RLLCELFIRAPKR--RNQPDYYEVVSQPIDLMKI 57 (116)
T ss_dssp CBGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHH
T ss_pred CeeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHH
Confidence 3456678888754 2567899999999999764
No 125
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=54.94 E-value=1 Score=44.23 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=31.9
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+..+..+.+|..||.. ...++|+++|++||||.+-
T Consensus 22 il~~l~~~~~~~~F~~pv~~--~~~pdY~~iI~~PmdL~tI 60 (265)
T 3uv5_A 22 IINDMRDLPNTYPFHTPVNA--KVVKDYYKIITRPMDLQTL 60 (265)
T ss_dssp HHHHHHTSTTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHcCCCchhhhCCCCh--hhcCCHHHHhCCCCcHHHH
Confidence 66666777788899999976 2578999999999999764
No 126
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.90 E-value=7.8 Score=31.36 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=35.3
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
.+.|.+|...-.+ -+.|..|...||..|+..-|.... .=.||.|+..
T Consensus 15 i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSC
T ss_pred CCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCc
Confidence 4579999976542 357889999999999987776542 2469999864
No 127
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=49.27 E-value=1.6 Score=43.74 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCCcccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 361 TVPYTTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 361 lllyl~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
++..+..+..+..|..+|.. ...++|+++|++||||++-
T Consensus 55 il~~l~~~~~a~~F~~pV~~--~~~pdY~~iIk~PmDL~tI 93 (292)
T 3aad_A 55 IINDMRDLPNTYPFHTPVNA--KVVKDYYKIITRPMDLQTL 93 (292)
T ss_dssp HHHHHSSSTTCGGGSSSCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred HHHHHHhCCcchhhcCCCCc--hhcccHHHHcCCcCCHHHH
Confidence 55555566778899999964 2578999999999999864
No 128
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=49.27 E-value=1.5 Score=39.40 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=25.1
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+.+.+..|..+|.. ...++|+++|++||+|.+-
T Consensus 45 ~~~~~~~F~~~~~~--~~~pdY~~iIk~PmdL~tI 77 (150)
T 3tlp_A 45 GRRLCDLFMVKPSK--KDYPDYYKIILEPMDLKII 77 (150)
T ss_dssp CCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHH
T ss_pred CCcccHHhcCCCch--hhCcCHHHHhCCCCCHHHH
Confidence 44556688877754 3567899999999999774
No 129
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=49.10 E-value=8.9 Score=31.90 Aligned_cols=36 Identities=28% Similarity=0.663 Sum_probs=26.7
Q ss_pred CCCCCCCCcccccccccccccc--ccCCceEeccC--CCCcccccccC
Q 009705 258 DVDSGTGCSGICSRSCKICGRS--ETALKLLLCDD--CEEAFHVTCYT 301 (528)
Q Consensus 258 ~v~~g~~~cp~c~d~C~VC~~~--g~~~~LL~CD~--C~r~yH~~Cl~ 301 (528)
+||..-|. ..|.+|+.. | .-+.|.. |.++||..|-.
T Consensus 10 NIp~~R~~-----l~C~iC~~~~~G---AciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 10 NIPPARWK-----LTCYLCKQKGVG---ASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCCCC-----CCBTTTTBCCSS---CEEECSCTTTCCEEEHHHHH
T ss_pred CCChHHhc-----CCCcCCCCCCCc---EeEecCCCCCCCcCcHHHHH
Confidence 35555564 469999853 5 6788875 99999999974
No 130
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=45.49 E-value=3.4 Score=40.61 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=27.9
Q ss_pred ccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 365 TTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 365 l~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
+..++.+.+|..+|.. ...++|+++|++||||.+-.
T Consensus 149 l~~~~~~~~F~~pv~~--~~~pdY~~iIk~Pmdl~tI~ 184 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETIR 184 (265)
T ss_dssp TTTSTTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHHH
T ss_pred HHhhhhhHHHhCCCCh--hHhCcHHHHhCCcccHHHHH
Confidence 3445667789999975 35789999999999997643
No 131
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=44.48 E-value=3.8 Score=40.96 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.7
Q ss_pred ccccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 365 TTSVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 365 l~cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+..+..+.+|..+|.. ...++|+++|++||||++-
T Consensus 182 l~~~~~s~~F~~pvd~--~~~pdY~~iIk~PmdL~tI 216 (292)
T 3aad_A 182 MMAVPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETI 216 (292)
T ss_dssp GGGSTTCGGGTSCCCT--TTSTTHHHHCSSCCCHHHH
T ss_pred hhcCcchhHHHhcccc--cccccHHHHcCCcCCHHHH
Confidence 4455667789999964 3578999999999998774
No 132
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.07 E-value=10 Score=30.00 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=25.6
Q ss_pred cCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCcccc
Q 009705 223 TTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGIC 269 (528)
Q Consensus 223 ~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~c 269 (528)
..++....+|.|..-|+..|+-. +...++.+.|+|+.|
T Consensus 28 ~~~~~mi~CD~C~~wfH~~Cv~~---------~~~~~~~~~w~C~~C 65 (75)
T 2k16_A 28 DDGSPMIGCDDCDDWYHWPCVGI---------MAAPPEEMQWFCPKC 65 (75)
T ss_dssp CSSCCEEECSSSSSEEEHHHHTC---------SSCCCSSSCCCCTTT
T ss_pred CCCCCEEEcCCCCcccccccCCC---------CccCCCCCCEEChhc
Confidence 34667888999998887776542 223345678998744
No 133
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=41.76 E-value=5.6 Score=34.87 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=0.0
Q ss_pred cCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 289 DDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 289 D~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
-.|...||..|+.+-|... -.||.|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTR----QVCPLDNRE 109 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHcC----CcCCCCCCe
Confidence 3689999999998876652 369999875
No 134
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=41.76 E-value=3.4 Score=42.59 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.8
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTS 401 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~s 401 (528)
+++.+.+|..+|.. ...++|+++|++||||.+-
T Consensus 227 ~~~~s~~F~~pvd~--~~~PdY~~iIk~PmDL~tI 259 (361)
T 2r10_A 227 KVKLSEPFMELVDK--DELPEYYEIVHSPMALSIV 259 (361)
T ss_dssp SSCTTGGGSSCCCT--TTCTHHHHHCSSCCCHHHH
T ss_pred CCcchhcccCCCCh--hhcccHHHHhcCcccHHHH
Confidence 45667789999965 2578999999999999775
No 135
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=40.53 E-value=10 Score=29.17 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=26.7
Q ss_pred CcccccccccchhhhccCcccccCCCCCCCCCCC--C-CCCCCCcccc
Q 009705 225 GKDLSAKDLCISILRNEGMLERFWPTQIRSSAND--V-DSGTGCSGIC 269 (528)
Q Consensus 225 ~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~--v-~~g~~~cp~c 269 (528)
.+++..+|.|...|+..|+.- .+.. + +.|.|+|+.|
T Consensus 20 ~~~ll~Cd~C~~~~H~~C~~p---------~l~~~~~~p~~~W~C~~C 58 (66)
T 2yt5_A 20 PNEMVICDKCGQGYHQLCHTP---------HIDSSVIDSDEKWLCRQC 58 (66)
T ss_dssp TBCEEECSSSCCEEETTTSSS---------CCCHHHHHSSCCCCCHHH
T ss_pred CCCEEECCCCChHHHhhhCCC---------cccccccCCCCCEECCCC
Confidence 478888999999999888762 2222 3 7899998743
No 136
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=40.49 E-value=7.8 Score=40.53 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=34.0
Q ss_pred ccccccccccccC-C--ceEecc--CCCCcccccccCCCcCCCCCC-------CccChhccccc
Q 009705 270 SRSCKICGRSETA-L--KLLLCD--DCEEAFHVTCYTPRIKIVPSD-------EWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~-~--~LL~CD--~C~r~yH~~Cl~PpL~~iP~g-------~W~C~~C~~~~ 321 (528)
...|.+|-..-.+ + ....|+ .|...||..|+...+.+.+.+ .=-||.|+..-
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 3468888864432 2 235688 899999999997755443321 12399998753
No 137
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.16 E-value=12 Score=28.95 Aligned_cols=31 Identities=3% Similarity=0.054 Sum_probs=20.4
Q ss_pred CCcccccccCCcccccccccchhhhccCccc
Q 009705 215 SSSAVMLETTGKDLSAKDLCISILRNEGMLE 245 (528)
Q Consensus 215 ss~I~~~e~~~ed~s~~D~C~sil~~~gl~~ 245 (528)
.|.||+.++...+....-.|.|+|+..|+..
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 47 (78)
T 2ect_A 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVP 47 (78)
T ss_dssp CCTTTTSCCCTTSCEEECTTSCEEETTTTHH
T ss_pred CCeeCCccccCCCCEEEeCCCCeecHHHHHH
Confidence 4457766655444333335999999999875
No 138
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=39.50 E-value=3 Score=42.17 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=27.1
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 367 SVRVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 367 cVR~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
+++.+..|..+|.. ...++|+++|++||||.+-+
T Consensus 177 ~~~~s~~F~~pvd~--~~~PdY~~iIk~PMDL~tI~ 210 (311)
T 2r0y_A 177 KVKLSEPFMELVDK--DELPEYYEIVHSPMALSIVK 210 (311)
T ss_dssp SSCTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHHH
T ss_pred CCccHHHHhCCCCh--hhcccHHHHhCCccCHHHHH
Confidence 45667789999965 25789999999999997753
No 139
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=39.34 E-value=6.9 Score=33.48 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=23.7
Q ss_pred eccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 287 LCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 287 ~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
.--.|...||..|+.+-|.. .-.||.|+...
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~ 99 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 99 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred eecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence 33479999999999887664 24699998753
No 140
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=38.00 E-value=11 Score=34.25 Aligned_cols=62 Identities=15% Similarity=0.326 Sum_probs=37.6
Q ss_pred CCCCeEecccccCCCCCCCCcccCCCccc---cCccc---ccCCCCceeeccccCCCCCCCCCCCCCChHHHHHHHHHHH
Q 009705 419 SIGNWLQCKQVLEGTGDGVDGTSCGKWRR---APLFE---VQTDDWECFCAVQWDPTHADCAVPQELETDEVSKQLKYLE 492 (528)
Q Consensus 419 s~gnw~qC~~c~~~~g~~~~~i~C~kwrr---~p~~~---~~~~~w~c~c~~~Wdp~h~dC~~P~el~~~~~~~~l~~~~ 492 (528)
..|.||||+ .|..|-- +.+.. ..+++|.|.-+....... .....|..++...+.+.++
T Consensus 19 ~~~~mi~Cd-------------~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~---~~~~~l~~~~~~~l~~il~ 82 (174)
T 2ri7_A 19 ESKFYIGCD-------------RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM---TVLTPLTEKDYEGLKRVLR 82 (174)
T ss_dssp TTSCEEECT-------------TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHH---TTTSBCCHHHHHHHHHHHH
T ss_pred CCCCEeECC-------------CCCchhChhhcCCchhhccCccCeecCCCcchhccc---cccccCCHHHHHHHHHHHH
Confidence 468899999 7888843 22222 247899998776553211 1233566666666666665
Q ss_pred HHHh
Q 009705 493 MLRL 496 (528)
Q Consensus 493 ~~~~ 496 (528)
.|..
T Consensus 83 ~l~~ 86 (174)
T 2ri7_A 83 SLQA 86 (174)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 141
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.43 E-value=13 Score=28.49 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=30.7
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.. .+++ .|...||..|+...+.. ...||.|+...
T Consensus 15 ~~~C~IC~~~~~~-~~~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVH-PVSL--PCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSS-EEEE--TTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred CCCCccCCcccCC-CEEc--cCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 3578999875422 2222 58999999999765543 25799998754
No 142
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.37 E-value=9.1 Score=29.61 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=21.8
Q ss_pred cCCCcccccccCCcccccccccchhhhccCccc
Q 009705 213 CSSSSAVMLETTGKDLSAKDLCISILRNEGMLE 245 (528)
Q Consensus 213 Csss~I~~~e~~~ed~s~~D~C~sil~~~gl~~ 245 (528)
-..|.||+.++...+....-.|.|+|+..|+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDK 55 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHH
Confidence 344557776665544333335999999999875
No 143
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.02 E-value=8.8 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=30.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
...|.+|...-..... -.|...||..|+...+. .+...||.|+..
T Consensus 15 ~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLS---SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHT---TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHH---hCcCCCCCCCcC
Confidence 3568899875432222 27899999999976554 234579999875
No 144
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=34.34 E-value=22 Score=27.30 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=33.1
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCC---CCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIV---PSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~i---P~g~W~C~~C~~~~ 321 (528)
...|.+|...-..-.++ .|...||..|+...+... ..+.-.||.|+...
T Consensus 12 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35688998754322232 689999999998765542 12356899998754
No 145
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.13 E-value=9.7 Score=29.02 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=32.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.. ..++ .|...||..|+...+.. ..+.-.||.|+...
T Consensus 20 ~~~C~IC~~~~~~-~~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTI--DCGHNFCLKCITQIGET-SCGFFKCPLCKTSV 67 (73)
T ss_dssp CCBCTTTCSBCSS-EEEC--TTCCEEEHHHHHHHCSS-SCSCCCCSSSCCCC
T ss_pred CCEeccCCcccCC-eEEc--CCCChhhHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 3578999875432 2333 89999999999765542 12456899998753
No 146
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=32.99 E-value=19 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.530 Sum_probs=33.1
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKKH 322 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~~ 322 (528)
+..|.+|...-.. ...+ .|...|+..|+...+.. +...||.|+....
T Consensus 15 ~~~C~iC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTL--PCNHTLCKPCFQSTVEK---ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS-CEEC--TTSCEECHHHHCCCCCT---TTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc-eeEc--CCCCHHhHHHHHHHHhH---CcCCCCCCCcccC
Confidence 4579999875432 2333 79999999999766542 4578999988643
No 147
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.84 E-value=26 Score=29.36 Aligned_cols=34 Identities=32% Similarity=0.880 Sum_probs=25.8
Q ss_pred ceEeccCCC-CcccccccCCCcCCCCCCCccChhcccc
Q 009705 284 KLLLCDDCE-EAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 284 ~LL~CD~C~-r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
.||+|..|. .+-|..|.. |.. ....|.|..|...
T Consensus 45 ~L~lC~~Cgs~gtH~~Cs~--l~~-~~~~weC~~C~~v 79 (85)
T 1weq_A 45 RLILCATCGSHGTHRDCSS--LRP-NSKKWECNECLPA 79 (85)
T ss_dssp BCEECSSSCCCEECSGGGT--CCT-TCSCCCCTTTSCC
T ss_pred EEEeCcccCCchhHHHHhC--CcC-CCCCEECCcCccc
Confidence 788888886 567999994 443 3458999999853
No 148
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=29.58 E-value=8 Score=39.77 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.6
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 370 VGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 370 ~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
++..|..+|.. ...++|+++|++||||.+-+
T Consensus 97 ~~~~F~~p~~~--~~~PdY~~iIk~Pmdl~tI~ 127 (361)
T 2r10_A 97 IFKDFIKLPSR--KFHPQYYYKIQQPMSINEIK 127 (361)
T ss_dssp HHGGGSSCCCT--TTCTTHHHHCSSCCCHHHHH
T ss_pred ccHHhcCCCCc--ccCCChHhhcCCCcCHHHHH
Confidence 34579988865 35689999999999998753
No 149
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.47 E-value=12 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.447 Sum_probs=31.1
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.. .+ -.|...||..|+...+. ....||.|+...
T Consensus 15 ~~~C~IC~~~~~~-~~---~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD-LI---LPCAHSFCQKCIDKWSD----RHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS-EE---ETTTEEECHHHHHHSSC----CCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC-cc---cCCCCcccHHHHHHHHH----CcCcCCCcCCcc
Confidence 3578899876543 22 35888899999976555 356899998753
No 150
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.21 E-value=40 Score=28.30 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=26.7
Q ss_pred ccccccCCcccccccccchhhhccCcccccCCCCCCCCCCCCCCCCCCccc
Q 009705 218 AVMLETTGKDLSAKDLCISILRNEGMLERFWPTQIRSSANDVDSGTGCSGI 268 (528)
Q Consensus 218 I~~~e~~~ed~s~~D~C~sil~~~gl~~~~~~~~~~~~~e~v~~g~~~cp~ 268 (528)
||-.....+.+..+|.|..-|+..|+-. ....++ ..|+|+.
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~~---------~~~~~p-~~w~C~~ 72 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMGI---------DRQHIP-DTYLCER 72 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTTC---------CTTSCC-SSBCCTT
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCCC---------CccCCC-CCEECCC
Confidence 4544455678888999999888887642 233444 3677763
No 151
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=27.10 E-value=13 Score=30.70 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=34.8
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-. .-+.|-.|+..||..|+...+.... ..||.|+...
T Consensus 22 ~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBC
T ss_pred CCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcC
Confidence 457999997542 4566789999999999976554432 5799998764
No 152
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.98 E-value=20 Score=25.81 Aligned_cols=44 Identities=20% Similarity=0.557 Sum_probs=26.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLC 317 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C 317 (528)
...|.+|...-....++ .|...||..|+...+... .+.-.||.|
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVII---ECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred CCCCccCCcccCccEeC---CCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 34688998765332332 588888888886554332 124466665
No 153
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=26.90 E-value=4.7 Score=40.79 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=25.1
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCccCCCCC
Q 009705 369 RVGKGFQADIPDWLAPTNNDGYALGEPLELDTSE 402 (528)
Q Consensus 369 R~G~~Fqa~VP~Wsg~~~~y~~~IgePMdLd~se 402 (528)
+++..|..+|.. ...++|+++|++||+|.+-+
T Consensus 46 ~~~~~F~~p~~~--~~~PdY~~iIk~PmDL~tI~ 77 (311)
T 2r0y_A 46 DIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIK 77 (311)
T ss_dssp HHHGGGSSCCCT--TTCHHHHHHCSSCCCHHHHH
T ss_pred chhHHhcCCCCc--ccCCChHHHcCCCCCHHHHH
Confidence 455679988865 35689999999999998753
No 154
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.84 E-value=21 Score=34.61 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=34.2
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
-..|.+|..--- .-..|..|...||..|..-.+... +.--||.|...
T Consensus 180 i~~C~iC~~iv~--~g~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCS--SCEECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCB
T ss_pred CCcCcchhhHHh--CCcccCccChHHHHHHHHHHHHhC--CCCCCCCCCCC
Confidence 357999997653 347799999999999996544432 34569999764
No 155
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=26.77 E-value=6.7 Score=29.68 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=32.6
Q ss_pred cccccccccccc----CCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSET----ALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~----~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+..|.+|...-. ....+..-.|...||..|+..-+... -.||.|+...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCcc
Confidence 356888886431 12444566899999999997655432 2799998753
No 156
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.61 E-value=11 Score=28.07 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=26.5
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLC 317 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C 317 (528)
+..|.+|...-.. ..++ .|...||..|+...+.. ..+.-.||.|
T Consensus 20 ~~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTI--DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSS-CEEC--TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred CCCCCcCCchhCC-eEEe--CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 3578899875432 2333 78888888888655442 1123456665
No 157
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.45 E-value=14 Score=28.57 Aligned_cols=49 Identities=29% Similarity=0.466 Sum_probs=31.7
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCC--CCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKI--VPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~--iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-..-.++ .|...||..|+...+.. ...+.-.||.|+...
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 34688998765322222 68889999998654433 123356899998754
No 158
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=23.85 E-value=19 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=33.8
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-. .-+..-.|...||..|+...+.. +...||.|+...
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcC
Confidence 457999987543 33445689999999999765542 356799998754
No 159
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.77 E-value=9.8 Score=28.42 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=31.5
Q ss_pred cccccccccccc----CCceEeccCCCCcccccccCCCcCCCCCCCccChhcccc
Q 009705 270 SRSCKICGRSET----ALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKK 320 (528)
Q Consensus 270 ~d~C~VC~~~g~----~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~ 320 (528)
...|.+|...-. ....+.--.|...||..|+...+.. .-.||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 356888886431 1244455688999999999765443 2369999864
No 160
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=23.68 E-value=13 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=31.4
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
...|.+|...-.. ...+ .|+..||..|+...+. .+...||.|+...
T Consensus 52 ~~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITT--VCQHNVCKDCLDRSFR---AQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSS-EEEC--TTSCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred CCCCCcCChHHcC-cEEe--eCCCcccHHHHHHHHh---HCcCCCCCCCccC
Confidence 3468899875432 2222 7999999999976554 2345899998754
No 161
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.54 E-value=15 Score=28.36 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=31.9
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCC--CCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIV--PSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~i--P~g~W~C~~C~~~~ 321 (528)
...|.+|...-.. ..+ -.|...||..|+...+... ..+...||.|+...
T Consensus 19 ~~~C~IC~~~~~~-p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSS-CEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCc-cee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 3468899876432 222 2588899999997544432 23467899998753
No 162
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.20 E-value=20 Score=29.43 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=31.1
Q ss_pred cccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 271 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 271 d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..|.+|...-..-..+ .|+..||..|+...+... .+...||.|+...
T Consensus 22 ~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEPVST---KCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSCCBC---TTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCC
T ss_pred CCCcccChhhcCeEEC---CCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcC
Confidence 4688888754322222 689999999987654432 2456899998743
No 163
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=23.03 E-value=14 Score=27.76 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=30.6
Q ss_pred ccccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 270 SRSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 270 ~d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
+..|.+|...-.. -...-.|...||..|+...+.. ...||.|+...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCC
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhh
Confidence 3568899876432 1233468889999999764432 24799998754
No 164
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.93 E-value=20 Score=31.29 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=29.2
Q ss_pred cccccccccccCCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 271 RSCKICGRSETALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 271 d~C~VC~~~g~~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..|.+|...-..-.++ .|+..||..|+...+.. .-.||.|+...
T Consensus 54 ~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKR----KIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSEEEE---TTSCEEEHHHHHHHTTT----CSBCTTTCCBC
T ss_pred CCCcccCcccCCceEC---CCCCCccHHHHHHHHHc----CCcCCCCCCcC
Confidence 3688998754322222 58889999998655443 23699998753
No 165
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.48 E-value=8.2 Score=28.40 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=31.5
Q ss_pred ccccccccccc----CCceEeccCCCCcccccccCCCcCCCCCCCccChhccccc
Q 009705 271 RSCKICGRSET----ALKLLLCDDCEEAFHVTCYTPRIKIVPSDEWFCHLCLKKK 321 (528)
Q Consensus 271 d~C~VC~~~g~----~~~LL~CD~C~r~yH~~Cl~PpL~~iP~g~W~C~~C~~~~ 321 (528)
..|.+|...-. ..+.+..-.|...||..|+...+.. .-.||.|+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccC
Confidence 46888886431 1234455689999999999765443 23799998753
Done!